Multiple sequence alignment - TraesCS6B01G437400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G437400 chr6B 100.000 2858 0 0 1 2858 704412974 704410117 0.000000e+00 5278
1 TraesCS6B01G437400 chr6B 92.233 103 6 2 2617 2718 801977 802078 8.250000e-31 145
2 TraesCS6B01G437400 chr6A 96.485 2646 61 9 1 2621 609023218 609020580 0.000000e+00 4342
3 TraesCS6B01G437400 chr6A 97.203 143 4 0 2716 2858 609020484 609020342 2.840000e-60 243
4 TraesCS6B01G437400 chr4D 93.000 100 7 0 2619 2718 85487340 85487439 2.290000e-31 147
5 TraesCS6B01G437400 chr2B 93.069 101 5 2 2619 2718 488517051 488516952 2.290000e-31 147
6 TraesCS6B01G437400 chr2B 92.079 101 6 2 2619 2718 527402211 527402112 1.070000e-29 141
7 TraesCS6B01G437400 chr4B 92.079 101 6 2 2619 2718 158580676 158580775 1.070000e-29 141
8 TraesCS6B01G437400 chr1D 92.079 101 7 1 2620 2719 360478836 360478936 1.070000e-29 141
9 TraesCS6B01G437400 chr7B 91.000 100 9 0 2619 2718 148477356 148477257 4.970000e-28 135
10 TraesCS6B01G437400 chr5A 89.720 107 10 1 2620 2726 491734851 491734956 4.970000e-28 135
11 TraesCS6B01G437400 chr3D 87.069 116 12 3 2616 2729 435678629 435678515 8.310000e-26 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G437400 chr6B 704410117 704412974 2857 True 5278.0 5278 100.000 1 2858 1 chr6B.!!$R1 2857
1 TraesCS6B01G437400 chr6A 609020342 609023218 2876 True 2292.5 4342 96.844 1 2858 2 chr6A.!!$R1 2857

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
433 450 0.172803 TACCTCGAGCGCTCTTTTCC 59.827 55.0 32.88 8.71 0.0 3.13 F
1460 1480 0.322975 AGCTGTTCGAGGACAATGCT 59.677 50.0 0.00 0.00 0.0 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1473 1493 1.340405 CCCCTCCACTTCATTCACAGG 60.340 57.143 0.0 0.0 0.0 4.00 R
2723 2750 3.407698 TGCGAGCAGAGATGGTTAAAAA 58.592 40.909 0.0 0.0 0.0 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 0.808125 CTCTGTCCTCCTCACACTCG 59.192 60.000 0.00 0.00 0.00 4.18
55 56 2.701780 CCTCCTCACACTCGTCGGG 61.702 68.421 0.00 0.00 0.00 5.14
78 79 3.255888 AGACTGTCGCACTGATTAGTCAA 59.744 43.478 1.52 0.00 41.96 3.18
120 121 1.976132 ATACTGCGCATCCCACTGCT 61.976 55.000 12.24 0.00 40.06 4.24
238 252 2.159310 AGAATCCGAGAGCGTTCTTCTG 60.159 50.000 2.39 0.00 31.96 3.02
344 361 0.605319 ATTTCACTCGGCGCTTTGGA 60.605 50.000 7.64 0.00 0.00 3.53
410 427 3.392882 TGCCACAGATATTACAGATGCG 58.607 45.455 0.00 0.00 0.00 4.73
420 437 1.306148 TACAGATGCGGTCTACCTCG 58.694 55.000 0.00 0.00 34.69 4.63
433 450 0.172803 TACCTCGAGCGCTCTTTTCC 59.827 55.000 32.88 8.71 0.00 3.13
474 491 0.391263 GAGTTTCAGTGGCTACCCGG 60.391 60.000 0.00 0.00 0.00 5.73
475 492 2.038837 GTTTCAGTGGCTACCCGGC 61.039 63.158 0.00 0.00 38.97 6.13
496 513 3.157087 CCCGCCAAGCAAATATCCTAAT 58.843 45.455 0.00 0.00 0.00 1.73
621 638 4.760047 CCAGCTTGTAGGCGCCGT 62.760 66.667 23.20 12.38 37.29 5.68
716 733 2.509052 TACAGATTTCCTCCGCATCG 57.491 50.000 0.00 0.00 0.00 3.84
752 769 3.827008 TGGTGTATCAGAGCCTCATTC 57.173 47.619 0.00 0.00 0.00 2.67
798 815 4.166531 TCAGTTGGTTTACCCACCTTAGTT 59.833 41.667 0.00 0.00 45.19 2.24
916 933 1.604438 GGGTTTTGATTTGGGTGCGTC 60.604 52.381 0.00 0.00 0.00 5.19
1011 1028 5.243507 TCAGATCACTAAGATGGCTGATCTC 59.756 44.000 9.44 0.00 44.91 2.75
1014 1031 4.285020 TCACTAAGATGGCTGATCTCTGT 58.715 43.478 0.00 0.78 40.89 3.41
1082 1099 3.691609 CCAGGTTAGAGCAAATTCAGACC 59.308 47.826 0.00 0.00 0.00 3.85
1085 1102 4.079253 GGTTAGAGCAAATTCAGACCCAA 58.921 43.478 0.00 0.00 0.00 4.12
1126 1143 7.746475 GTCATTGCTTATGTTAGTTTGACTGAC 59.254 37.037 0.00 0.00 35.53 3.51
1175 1192 1.205655 TCTGATTGAAGCTCCTGTCCG 59.794 52.381 0.00 0.00 0.00 4.79
1257 1274 3.118542 GTTTTTGAACTTGCTGCCTCTG 58.881 45.455 0.00 0.00 0.00 3.35
1269 1286 2.751806 GCTGCCTCTGTATTCTTTGCTT 59.248 45.455 0.00 0.00 0.00 3.91
1387 1407 4.711355 CCATGTTATCATTGGTTTCCAGGT 59.289 41.667 0.00 0.00 33.81 4.00
1399 1419 4.825085 TGGTTTCCAGGTAAATGAAGACAC 59.175 41.667 0.00 0.00 0.00 3.67
1459 1479 0.445436 CAGCTGTTCGAGGACAATGC 59.555 55.000 5.25 0.00 0.00 3.56
1460 1480 0.322975 AGCTGTTCGAGGACAATGCT 59.677 50.000 0.00 0.00 0.00 3.79
1473 1493 3.492313 GACAATGCTGTCGAACCAATTC 58.508 45.455 0.00 0.00 42.54 2.17
1496 1516 0.991920 TGAATGAAGTGGAGGGGGTC 59.008 55.000 0.00 0.00 0.00 4.46
1533 1553 3.491208 CCAGAGCTGGGAATTGAGG 57.509 57.895 8.69 0.00 46.81 3.86
1558 1578 8.434392 GGACCAGGGTACACAATTTATAGATTA 58.566 37.037 0.00 0.00 0.00 1.75
1662 1682 1.278985 AGGATGATGACGTGGAAGCAA 59.721 47.619 0.00 0.00 0.00 3.91
1665 1685 3.876914 GGATGATGACGTGGAAGCAATAA 59.123 43.478 0.00 0.00 0.00 1.40
1724 1744 5.185249 TGTTCCTGAGGAATACACTGAGTAC 59.815 44.000 18.18 0.72 44.04 2.73
1758 1778 2.411628 TGCGGGTATGCAACTTGTAT 57.588 45.000 0.00 0.00 43.02 2.29
1830 1850 0.890996 ACACAGCTAAGCTTGGTGGC 60.891 55.000 22.86 15.78 37.04 5.01
1931 1951 7.100458 AGATTGCTACTGTTTCTGTTTGTTT 57.900 32.000 0.00 0.00 0.00 2.83
2062 2082 5.815581 AGGGACTTGTGTTCATTGCTTATA 58.184 37.500 0.00 0.00 27.25 0.98
2075 2095 7.558161 TCATTGCTTATACATTCTGAACTGG 57.442 36.000 0.00 0.00 0.00 4.00
2109 2129 4.524802 AGCAAATGGGATTGGATGACTA 57.475 40.909 0.00 0.00 0.00 2.59
2186 2212 4.572985 TGTGTTGAGAAAATGCCTCTTG 57.427 40.909 0.00 0.00 0.00 3.02
2322 2348 7.707893 GCATATTGAAGTTATTGCCATTGAAGT 59.292 33.333 0.00 0.00 0.00 3.01
2519 2545 2.288213 TGCTGAGTTCACAAGGACTACG 60.288 50.000 0.00 0.00 0.00 3.51
2628 2654 7.881775 ATGAAACAATAATTGTACTCCCTCC 57.118 36.000 0.00 0.00 44.59 4.30
2629 2655 5.878116 TGAAACAATAATTGTACTCCCTCCG 59.122 40.000 0.00 0.00 44.59 4.63
2631 2657 5.019785 ACAATAATTGTACTCCCTCCGTC 57.980 43.478 0.00 0.00 43.27 4.79
2632 2658 4.141779 ACAATAATTGTACTCCCTCCGTCC 60.142 45.833 0.00 0.00 43.27 4.79
2634 2660 0.042131 ATTGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
2635 2661 0.042131 TTGTACTCCCTCCGTCCCAT 59.958 55.000 0.00 0.00 0.00 4.00
2636 2662 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
2637 2663 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
2639 2665 3.140707 TGTACTCCCTCCGTCCCATAATA 59.859 47.826 0.00 0.00 0.00 0.98
2641 2667 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2642 2668 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2643 2669 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2644 2670 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2645 2671 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
2650 2676 7.883311 CCTCCGTCCCATAATATAAGAACATTT 59.117 37.037 0.00 0.00 0.00 2.32
2651 2677 9.284968 CTCCGTCCCATAATATAAGAACATTTT 57.715 33.333 0.00 0.00 0.00 1.82
2652 2678 9.635404 TCCGTCCCATAATATAAGAACATTTTT 57.365 29.630 0.00 0.00 0.00 1.94
2653 2679 9.677567 CCGTCCCATAATATAAGAACATTTTTG 57.322 33.333 0.00 0.00 0.00 2.44
2667 2693 9.950680 AAGAACATTTTTGACATTAGTGTAGTG 57.049 29.630 0.00 0.00 39.09 2.74
2668 2694 9.120538 AGAACATTTTTGACATTAGTGTAGTGT 57.879 29.630 0.00 0.00 39.09 3.55
2677 2703 6.913873 ACATTAGTGTAGTGTCAAAAACGT 57.086 33.333 0.00 0.00 36.63 3.99
2678 2704 8.064447 GACATTAGTGTAGTGTCAAAAACGTA 57.936 34.615 5.08 0.00 42.77 3.57
2679 2705 8.422973 ACATTAGTGTAGTGTCAAAAACGTAA 57.577 30.769 0.00 0.00 36.63 3.18
2681 2707 9.313323 CATTAGTGTAGTGTCAAAAACGTAATG 57.687 33.333 0.00 0.00 0.00 1.90
2683 2709 6.940714 AGTGTAGTGTCAAAAACGTAATGTC 58.059 36.000 0.00 0.00 0.00 3.06
2684 2710 6.535865 AGTGTAGTGTCAAAAACGTAATGTCA 59.464 34.615 0.00 0.00 0.00 3.58
2685 2711 7.064847 AGTGTAGTGTCAAAAACGTAATGTCAA 59.935 33.333 0.00 0.00 0.00 3.18
2686 2712 7.693120 GTGTAGTGTCAAAAACGTAATGTCAAA 59.307 33.333 0.00 0.00 0.00 2.69
2687 2713 8.235226 TGTAGTGTCAAAAACGTAATGTCAAAA 58.765 29.630 0.00 0.00 0.00 2.44
2689 2715 7.944997 AGTGTCAAAAACGTAATGTCAAAAAC 58.055 30.769 0.00 0.00 0.00 2.43
2690 2716 6.885188 GTGTCAAAAACGTAATGTCAAAAACG 59.115 34.615 0.00 4.10 40.99 3.60
2712 2738 9.751542 AAACGTTCTTATATTATGAGACAGAGG 57.248 33.333 0.00 0.00 0.00 3.69
2713 2739 7.887381 ACGTTCTTATATTATGAGACAGAGGG 58.113 38.462 0.00 0.00 0.00 4.30
2714 2740 7.724506 ACGTTCTTATATTATGAGACAGAGGGA 59.275 37.037 0.00 0.00 0.00 4.20
2723 2750 7.496346 TTATGAGACAGAGGGAGTAATGTTT 57.504 36.000 0.00 0.00 0.00 2.83
2770 2797 4.000988 ACCATACTGTAGCGAAAAGTTGG 58.999 43.478 0.00 9.78 32.77 3.77
2779 2806 0.313987 CGAAAAGTTGGCCCCACTTC 59.686 55.000 15.93 5.99 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 2.126424 GTGCGACAGTCTCCCGAC 60.126 66.667 0.00 0.00 40.54 4.79
55 56 3.119814 TGACTAATCAGTGCGACAGTCTC 60.120 47.826 0.00 0.00 38.78 3.36
78 79 3.196685 GGAGCTCCAGAACAATACTCAGT 59.803 47.826 28.43 0.00 35.64 3.41
203 217 0.463474 GATTCTCCTGCTCCTGTGGC 60.463 60.000 0.00 0.00 0.00 5.01
238 252 4.722361 ACCTTCTCGGATCTTGTACTTC 57.278 45.455 0.00 0.00 36.31 3.01
410 427 1.378124 AAGAGCGCTCGAGGTAGACC 61.378 60.000 30.39 4.43 34.09 3.85
420 437 1.230324 ACAAGTGGAAAAGAGCGCTC 58.770 50.000 30.01 30.01 0.00 5.03
433 450 4.928615 TCTGCCAACAAAAGAAAACAAGTG 59.071 37.500 0.00 0.00 0.00 3.16
474 491 1.109323 AGGATATTTGCTTGGCGGGC 61.109 55.000 0.00 0.00 0.00 6.13
475 492 2.270352 TAGGATATTTGCTTGGCGGG 57.730 50.000 0.00 0.00 0.00 6.13
476 493 4.853924 AATTAGGATATTTGCTTGGCGG 57.146 40.909 0.00 0.00 0.00 6.13
621 638 4.002906 AGTCTGGCGTATTTTCTGTTCA 57.997 40.909 0.00 0.00 0.00 3.18
716 733 6.704493 TGATACACCAACTCTTTCACAACTAC 59.296 38.462 0.00 0.00 0.00 2.73
752 769 7.999679 TGATGCATAAAGATAAAAAGGAGTGG 58.000 34.615 0.00 0.00 0.00 4.00
860 877 6.172136 TCCCAAATCTCAAAATCAAAGCAA 57.828 33.333 0.00 0.00 0.00 3.91
932 949 7.479980 TGAATTCAAACAGATCAAACTTCGTT 58.520 30.769 5.45 0.00 0.00 3.85
935 952 9.635520 ATCATGAATTCAAACAGATCAAACTTC 57.364 29.630 13.09 0.00 0.00 3.01
1066 1083 5.819991 AGAATTGGGTCTGAATTTGCTCTA 58.180 37.500 0.00 0.00 0.00 2.43
1082 1099 7.820872 AGCAATGACAATAAAAAGGAGAATTGG 59.179 33.333 0.00 0.00 34.38 3.16
1126 1143 4.334759 CCAGTGATCTGCAAGTGATAAAGG 59.665 45.833 0.00 0.00 40.09 3.11
1159 1176 0.687354 ACACGGACAGGAGCTTCAAT 59.313 50.000 0.00 0.00 0.00 2.57
1175 1192 2.258726 GGGGTGAACTTCGGCACAC 61.259 63.158 0.00 0.00 37.69 3.82
1257 1274 5.689383 TTCCAGTGTGAAGCAAAGAATAC 57.311 39.130 0.00 0.00 0.00 1.89
1269 1286 5.876651 ACATATGATAGCTTCCAGTGTGA 57.123 39.130 10.38 0.00 0.00 3.58
1313 1330 7.540299 AGAGACTACAGTTAGTACAGCAAATC 58.460 38.462 0.00 0.00 38.77 2.17
1387 1407 3.999001 CAGCTGCTCTGTGTCTTCATTTA 59.001 43.478 0.00 0.00 38.02 1.40
1459 1479 2.766313 TCACAGGAATTGGTTCGACAG 58.234 47.619 0.00 0.00 35.10 3.51
1460 1480 2.920724 TCACAGGAATTGGTTCGACA 57.079 45.000 0.00 0.00 35.10 4.35
1463 1483 4.216257 ACTTCATTCACAGGAATTGGTTCG 59.784 41.667 0.00 0.00 41.78 3.95
1473 1493 1.340405 CCCCTCCACTTCATTCACAGG 60.340 57.143 0.00 0.00 0.00 4.00
1496 1516 1.605710 GGAACATCCTCATCAATGGCG 59.394 52.381 0.00 0.00 32.53 5.69
1724 1744 2.747855 GCAAGAAGGCCACCCTCG 60.748 66.667 5.01 0.00 41.90 4.63
1830 1850 3.966026 GACCTTGTCGCCGTCCTCG 62.966 68.421 0.00 0.00 0.00 4.63
1850 1870 6.768381 ACCAGAAATAGTAGCAATCTAAAGCC 59.232 38.462 0.00 0.00 0.00 4.35
1982 2002 7.027874 TGTTTATTTAAGGAGTCAGGGTCAT 57.972 36.000 0.00 0.00 0.00 3.06
2062 2082 2.880443 ACATTGGCCAGTTCAGAATGT 58.120 42.857 5.11 8.46 37.40 2.71
2075 2095 4.584325 TCCCATTTGCTAAGATACATTGGC 59.416 41.667 0.00 0.00 37.20 4.52
2109 2129 9.686683 AAGTTGATCTAGCACATAAAAGGTATT 57.313 29.630 0.00 0.00 0.00 1.89
2322 2348 4.262894 GGGACAGAGGATAAAACACAGACA 60.263 45.833 0.00 0.00 0.00 3.41
2390 2416 6.851609 TGTCATATACAAACATTGAAGGTGC 58.148 36.000 0.00 0.00 34.29 5.01
2409 2435 7.790027 AGTTAGAGAATATGAGTTGCTGTCAT 58.210 34.615 2.32 2.32 38.26 3.06
2478 2504 3.805971 GCACAGCAAAGCAGAAAGAAAAT 59.194 39.130 0.00 0.00 0.00 1.82
2519 2545 6.436843 TTTCAGAAGTCACTTTCCAAAGAC 57.563 37.500 6.05 0.00 39.31 3.01
2621 2647 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2622 2648 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
2623 2649 5.247564 TGTTCTTATATTATGGGACGGAGGG 59.752 44.000 0.00 0.00 0.00 4.30
2624 2650 6.354794 TGTTCTTATATTATGGGACGGAGG 57.645 41.667 0.00 0.00 0.00 4.30
2625 2651 8.848474 AAATGTTCTTATATTATGGGACGGAG 57.152 34.615 0.00 0.00 0.00 4.63
2626 2652 9.635404 AAAAATGTTCTTATATTATGGGACGGA 57.365 29.630 0.00 0.00 0.00 4.69
2627 2653 9.677567 CAAAAATGTTCTTATATTATGGGACGG 57.322 33.333 0.00 0.00 0.00 4.79
2641 2667 9.950680 CACTACACTAATGTCAAAAATGTTCTT 57.049 29.630 0.00 0.00 40.48 2.52
2642 2668 9.120538 ACACTACACTAATGTCAAAAATGTTCT 57.879 29.630 0.00 0.00 40.48 3.01
2643 2669 9.382244 GACACTACACTAATGTCAAAAATGTTC 57.618 33.333 0.00 0.00 41.94 3.18
2653 2679 6.940714 ACGTTTTTGACACTACACTAATGTC 58.059 36.000 0.00 0.00 42.54 3.06
2656 2682 9.048446 ACATTACGTTTTTGACACTACACTAAT 57.952 29.630 0.00 0.00 0.00 1.73
2657 2683 8.422973 ACATTACGTTTTTGACACTACACTAA 57.577 30.769 0.00 0.00 0.00 2.24
2659 2685 6.535865 TGACATTACGTTTTTGACACTACACT 59.464 34.615 0.00 0.00 0.00 3.55
2660 2686 6.707711 TGACATTACGTTTTTGACACTACAC 58.292 36.000 0.00 0.00 0.00 2.90
2661 2687 6.905544 TGACATTACGTTTTTGACACTACA 57.094 33.333 0.00 0.00 0.00 2.74
2662 2688 8.603983 TTTTGACATTACGTTTTTGACACTAC 57.396 30.769 0.00 0.00 0.00 2.73
2664 2690 7.201282 CGTTTTTGACATTACGTTTTTGACACT 60.201 33.333 0.00 0.00 0.00 3.55
2665 2691 6.885188 CGTTTTTGACATTACGTTTTTGACAC 59.115 34.615 0.00 0.00 0.00 3.67
2666 2692 6.581542 ACGTTTTTGACATTACGTTTTTGACA 59.418 30.769 0.00 0.00 43.91 3.58
2667 2693 6.969672 ACGTTTTTGACATTACGTTTTTGAC 58.030 32.000 0.00 0.00 43.91 3.18
2686 2712 9.751542 CCTCTGTCTCATAATATAAGAACGTTT 57.248 33.333 0.46 0.00 0.00 3.60
2687 2713 8.361139 CCCTCTGTCTCATAATATAAGAACGTT 58.639 37.037 0.00 0.00 0.00 3.99
2689 2715 8.112016 TCCCTCTGTCTCATAATATAAGAACG 57.888 38.462 0.00 0.00 0.00 3.95
2690 2716 9.084533 ACTCCCTCTGTCTCATAATATAAGAAC 57.915 37.037 0.00 0.00 0.00 3.01
2697 2723 8.783660 AACATTACTCCCTCTGTCTCATAATA 57.216 34.615 0.00 0.00 0.00 0.98
2699 2725 7.496346 AAACATTACTCCCTCTGTCTCATAA 57.504 36.000 0.00 0.00 0.00 1.90
2702 2728 5.825593 AAAACATTACTCCCTCTGTCTCA 57.174 39.130 0.00 0.00 0.00 3.27
2723 2750 3.407698 TGCGAGCAGAGATGGTTAAAAA 58.592 40.909 0.00 0.00 0.00 1.94
2770 2797 4.404691 CCAGTTCTGAAGTGGGGC 57.595 61.111 28.90 1.29 46.25 5.80
2779 2806 7.913674 ATTCTAGAAGCTAAAACCAGTTCTG 57.086 36.000 11.53 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.