Multiple sequence alignment - TraesCS6B01G418700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G418700 chr6B 100.000 2356 0 0 1 2356 690756221 690758576 0.000000e+00 4351.0
1 TraesCS6B01G418700 chr6B 80.514 662 111 12 866 1522 689996531 689995883 2.100000e-135 492.0
2 TraesCS6B01G418700 chr6D 94.286 770 31 4 776 1538 454295281 454296044 0.000000e+00 1166.0
3 TraesCS6B01G418700 chr6D 87.649 502 43 9 54 537 454271776 454272276 1.220000e-157 566.0
4 TraesCS6B01G418700 chr6D 94.949 99 3 1 1736 1832 454305824 454305922 1.130000e-33 154.0
5 TraesCS6B01G418700 chr6D 100.000 32 0 0 1538 1569 454305420 454305451 2.530000e-05 60.2
6 TraesCS6B01G418700 chr6A 94.824 425 16 1 1151 1569 600527434 600527858 0.000000e+00 658.0
7 TraesCS6B01G418700 chr6A 92.892 408 18 4 754 1156 600513541 600513942 1.210000e-162 582.0
8 TraesCS6B01G418700 chr6A 89.655 319 23 6 1828 2144 600528358 600528668 4.720000e-107 398.0
9 TraesCS6B01G418700 chr6A 83.478 345 27 12 2 326 600477887 600478221 6.370000e-76 294.0
10 TraesCS6B01G418700 chr6A 97.938 97 2 0 1736 1832 600528239 600528335 4.030000e-38 169.0
11 TraesCS6B01G418700 chr6A 100.000 28 0 0 569 596 600478358 600478385 4.000000e-03 52.8
12 TraesCS6B01G418700 chr2D 95.455 44 2 0 1737 1780 206221699 206221656 1.170000e-08 71.3
13 TraesCS6B01G418700 chrUn 91.304 46 4 0 1734 1779 17530992 17530947 1.950000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G418700 chr6B 690756221 690758576 2355 False 4351.000000 4351 100.000 1 2356 1 chr6B.!!$F1 2355
1 TraesCS6B01G418700 chr6B 689995883 689996531 648 True 492.000000 492 80.514 866 1522 1 chr6B.!!$R1 656
2 TraesCS6B01G418700 chr6D 454295281 454296044 763 False 1166.000000 1166 94.286 776 1538 1 chr6D.!!$F2 762
3 TraesCS6B01G418700 chr6D 454271776 454272276 500 False 566.000000 566 87.649 54 537 1 chr6D.!!$F1 483
4 TraesCS6B01G418700 chr6A 600527434 600528668 1234 False 408.333333 658 94.139 1151 2144 3 chr6A.!!$F3 993

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
666 693 0.036306 TTTCCTTCGCTTCTCACCCC 59.964 55.0 0.0 0.0 0.0 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2248 2541 0.11131 CATACACACACACACGCACG 60.111 55.0 0.0 0.0 0.0 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.721286 GTATTTTCAAGACGATCCTCATCAT 57.279 36.000 0.00 0.00 0.00 2.45
25 26 8.147642 GTATTTTCAAGACGATCCTCATCATT 57.852 34.615 0.00 0.00 0.00 2.57
26 27 6.426980 TTTTCAAGACGATCCTCATCATTG 57.573 37.500 0.00 0.00 0.00 2.82
27 28 3.461061 TCAAGACGATCCTCATCATTGC 58.539 45.455 0.00 0.00 0.00 3.56
28 29 3.118665 TCAAGACGATCCTCATCATTGCA 60.119 43.478 0.00 0.00 0.00 4.08
29 30 3.109044 AGACGATCCTCATCATTGCAG 57.891 47.619 0.00 0.00 0.00 4.41
30 31 2.433604 AGACGATCCTCATCATTGCAGT 59.566 45.455 0.00 0.00 0.00 4.40
31 32 2.543012 GACGATCCTCATCATTGCAGTG 59.457 50.000 2.16 2.16 0.00 3.66
32 33 2.093288 ACGATCCTCATCATTGCAGTGT 60.093 45.455 9.23 0.00 0.00 3.55
33 34 3.132824 ACGATCCTCATCATTGCAGTGTA 59.867 43.478 9.23 0.00 0.00 2.90
34 35 3.739810 CGATCCTCATCATTGCAGTGTAG 59.260 47.826 9.23 5.71 0.00 2.74
35 36 2.910199 TCCTCATCATTGCAGTGTAGC 58.090 47.619 9.23 0.00 0.00 3.58
36 37 2.236893 TCCTCATCATTGCAGTGTAGCA 59.763 45.455 9.23 0.00 43.99 3.49
37 38 3.118149 TCCTCATCATTGCAGTGTAGCAT 60.118 43.478 9.23 0.00 45.19 3.79
38 39 3.250280 CCTCATCATTGCAGTGTAGCATC 59.750 47.826 9.23 0.00 45.19 3.91
39 40 3.208594 TCATCATTGCAGTGTAGCATCC 58.791 45.455 9.23 0.00 45.19 3.51
40 41 3.118149 TCATCATTGCAGTGTAGCATCCT 60.118 43.478 9.23 0.00 45.19 3.24
41 42 4.101430 TCATCATTGCAGTGTAGCATCCTA 59.899 41.667 9.23 0.00 45.19 2.94
42 43 3.797039 TCATTGCAGTGTAGCATCCTAC 58.203 45.455 9.23 0.00 45.19 3.18
50 51 3.198409 TGTAGCATCCTACAGGCAATG 57.802 47.619 0.00 0.00 46.72 2.82
51 52 1.876156 GTAGCATCCTACAGGCAATGC 59.124 52.381 12.01 12.01 42.50 3.56
52 53 0.816825 AGCATCCTACAGGCAATGCG 60.817 55.000 13.40 0.00 45.10 4.73
71 72 1.059692 CGTCTCAATTGCAGTACAGCG 59.940 52.381 5.73 0.00 37.31 5.18
81 82 1.141881 AGTACAGCGGCCAATCTCG 59.858 57.895 2.24 0.00 0.00 4.04
92 93 2.125512 AATCTCGGAGTGCACGGC 60.126 61.111 12.01 7.73 0.00 5.68
116 117 2.892425 CGTCTCCCAATGCTCCGC 60.892 66.667 0.00 0.00 0.00 5.54
117 118 2.514824 GTCTCCCAATGCTCCGCC 60.515 66.667 0.00 0.00 0.00 6.13
157 158 2.512896 GAGCTGGGATGGCCGATT 59.487 61.111 0.00 0.00 33.83 3.34
229 251 2.654079 CGGCCACCTCTTCTGCTCT 61.654 63.158 2.24 0.00 0.00 4.09
236 258 1.447489 CTCTTCTGCTCTGCGGTGG 60.447 63.158 0.00 0.00 36.18 4.61
237 259 3.123620 CTTCTGCTCTGCGGTGGC 61.124 66.667 6.36 6.36 36.18 5.01
275 297 2.121948 CTCCAAGAGGTCATGGATGGA 58.878 52.381 4.46 0.00 42.12 3.41
277 299 2.440627 TCCAAGAGGTCATGGATGGATG 59.559 50.000 0.00 0.00 38.65 3.51
278 300 2.488528 CCAAGAGGTCATGGATGGATGG 60.489 54.545 0.00 0.00 36.89 3.51
279 301 2.440627 CAAGAGGTCATGGATGGATGGA 59.559 50.000 0.00 0.00 0.00 3.41
304 326 1.768684 GCTCGCCAAGGGGATGGATA 61.769 60.000 6.31 0.00 43.54 2.59
374 396 2.813474 CGGTCTGCGCGATTTGGA 60.813 61.111 12.10 0.00 0.00 3.53
381 403 2.998667 CGCGATTTGGAGACGAGC 59.001 61.111 0.00 0.00 0.00 5.03
456 481 0.526524 CTCTGACGGGAATGACGAGC 60.527 60.000 0.00 0.00 34.93 5.03
470 495 2.639286 GAGCCAGCGGTGTGTTTG 59.361 61.111 14.40 0.00 0.00 2.93
474 499 0.869880 GCCAGCGGTGTGTTTGTTTC 60.870 55.000 14.40 0.00 0.00 2.78
495 522 1.117150 GCCCACGTCCACCTATTCTA 58.883 55.000 0.00 0.00 0.00 2.10
500 527 2.033049 CACGTCCACCTATTCTAGTCCG 59.967 54.545 0.00 0.00 0.00 4.79
545 572 4.783764 CCGGAGGCCCAATAAAATAATC 57.216 45.455 0.00 0.00 46.14 1.75
546 573 4.407365 CCGGAGGCCCAATAAAATAATCT 58.593 43.478 0.00 0.00 46.14 2.40
547 574 4.459337 CCGGAGGCCCAATAAAATAATCTC 59.541 45.833 0.00 0.00 46.14 2.75
548 575 5.316987 CGGAGGCCCAATAAAATAATCTCT 58.683 41.667 0.00 0.00 0.00 3.10
549 576 5.770162 CGGAGGCCCAATAAAATAATCTCTT 59.230 40.000 0.00 0.00 0.00 2.85
550 577 6.940298 CGGAGGCCCAATAAAATAATCTCTTA 59.060 38.462 0.00 0.00 0.00 2.10
551 578 7.611855 CGGAGGCCCAATAAAATAATCTCTTAT 59.388 37.037 0.00 0.00 0.00 1.73
552 579 9.314133 GGAGGCCCAATAAAATAATCTCTTATT 57.686 33.333 0.00 0.00 38.84 1.40
596 623 6.903883 TCTCTTATTAATTTCTCCACACGC 57.096 37.500 0.00 0.00 0.00 5.34
597 624 6.403049 TCTCTTATTAATTTCTCCACACGCA 58.597 36.000 0.00 0.00 0.00 5.24
598 625 7.047891 TCTCTTATTAATTTCTCCACACGCAT 58.952 34.615 0.00 0.00 0.00 4.73
599 626 7.224753 TCTCTTATTAATTTCTCCACACGCATC 59.775 37.037 0.00 0.00 0.00 3.91
600 627 4.900635 ATTAATTTCTCCACACGCATCC 57.099 40.909 0.00 0.00 0.00 3.51
601 628 2.198827 AATTTCTCCACACGCATCCA 57.801 45.000 0.00 0.00 0.00 3.41
602 629 2.425143 ATTTCTCCACACGCATCCAT 57.575 45.000 0.00 0.00 0.00 3.41
603 630 2.198827 TTTCTCCACACGCATCCATT 57.801 45.000 0.00 0.00 0.00 3.16
604 631 2.198827 TTCTCCACACGCATCCATTT 57.801 45.000 0.00 0.00 0.00 2.32
605 632 2.198827 TCTCCACACGCATCCATTTT 57.801 45.000 0.00 0.00 0.00 1.82
606 633 2.513753 TCTCCACACGCATCCATTTTT 58.486 42.857 0.00 0.00 0.00 1.94
657 684 7.573968 AAAAAGCATATATCTTTCCTTCGCT 57.426 32.000 9.27 0.00 33.06 4.93
658 685 7.573968 AAAAGCATATATCTTTCCTTCGCTT 57.426 32.000 9.27 0.00 38.74 4.68
659 686 6.793492 AAGCATATATCTTTCCTTCGCTTC 57.207 37.500 0.00 0.00 31.96 3.86
660 687 6.107901 AGCATATATCTTTCCTTCGCTTCT 57.892 37.500 0.00 0.00 0.00 2.85
661 688 6.162777 AGCATATATCTTTCCTTCGCTTCTC 58.837 40.000 0.00 0.00 0.00 2.87
662 689 5.928839 GCATATATCTTTCCTTCGCTTCTCA 59.071 40.000 0.00 0.00 0.00 3.27
663 690 6.128688 GCATATATCTTTCCTTCGCTTCTCAC 60.129 42.308 0.00 0.00 0.00 3.51
664 691 2.457366 TCTTTCCTTCGCTTCTCACC 57.543 50.000 0.00 0.00 0.00 4.02
665 692 1.002087 TCTTTCCTTCGCTTCTCACCC 59.998 52.381 0.00 0.00 0.00 4.61
666 693 0.036306 TTTCCTTCGCTTCTCACCCC 59.964 55.000 0.00 0.00 0.00 4.95
667 694 1.838073 TTCCTTCGCTTCTCACCCCC 61.838 60.000 0.00 0.00 0.00 5.40
688 715 7.660030 CCCCCTCTACATTATTGATGTTTTT 57.340 36.000 0.00 0.00 46.80 1.94
689 716 7.491682 CCCCCTCTACATTATTGATGTTTTTG 58.508 38.462 0.00 0.00 46.80 2.44
690 717 7.124147 CCCCCTCTACATTATTGATGTTTTTGT 59.876 37.037 0.00 0.00 46.80 2.83
691 718 8.531146 CCCCTCTACATTATTGATGTTTTTGTT 58.469 33.333 0.00 0.00 46.80 2.83
727 754 7.786178 TCATAATTATCCAAAGGAGACAACG 57.214 36.000 0.00 0.00 34.05 4.10
728 755 7.335627 TCATAATTATCCAAAGGAGACAACGT 58.664 34.615 0.00 0.00 34.05 3.99
729 756 7.827236 TCATAATTATCCAAAGGAGACAACGTT 59.173 33.333 0.00 0.00 34.05 3.99
730 757 6.894339 AATTATCCAAAGGAGACAACGTTT 57.106 33.333 0.00 0.00 34.05 3.60
731 758 6.894339 ATTATCCAAAGGAGACAACGTTTT 57.106 33.333 0.00 0.00 34.05 2.43
732 759 4.830826 ATCCAAAGGAGACAACGTTTTC 57.169 40.909 6.33 6.33 34.05 2.29
733 760 3.881220 TCCAAAGGAGACAACGTTTTCT 58.119 40.909 16.52 16.52 0.00 2.52
734 761 4.266714 TCCAAAGGAGACAACGTTTTCTT 58.733 39.130 17.49 2.35 0.00 2.52
735 762 4.703093 TCCAAAGGAGACAACGTTTTCTTT 59.297 37.500 17.49 8.46 0.00 2.52
736 763 5.184287 TCCAAAGGAGACAACGTTTTCTTTT 59.816 36.000 17.49 12.14 0.00 2.27
737 764 5.867174 CCAAAGGAGACAACGTTTTCTTTTT 59.133 36.000 17.49 16.59 0.00 1.94
757 784 5.840243 TTTTAATGACTCATCAGGCCATG 57.160 39.130 5.01 0.00 38.57 3.66
758 785 4.776435 TTAATGACTCATCAGGCCATGA 57.224 40.909 5.01 5.43 43.70 3.07
759 786 2.634815 ATGACTCATCAGGCCATGAC 57.365 50.000 5.01 0.00 41.91 3.06
760 787 0.176449 TGACTCATCAGGCCATGACG 59.824 55.000 5.01 0.00 41.91 4.35
761 788 0.176680 GACTCATCAGGCCATGACGT 59.823 55.000 5.01 6.69 41.91 4.34
762 789 1.409064 GACTCATCAGGCCATGACGTA 59.591 52.381 5.01 0.00 41.91 3.57
763 790 1.137086 ACTCATCAGGCCATGACGTAC 59.863 52.381 5.01 0.00 41.91 3.67
764 791 0.464036 TCATCAGGCCATGACGTACC 59.536 55.000 5.01 0.00 41.91 3.34
765 792 0.465705 CATCAGGCCATGACGTACCT 59.534 55.000 5.01 0.00 41.91 3.08
766 793 0.753262 ATCAGGCCATGACGTACCTC 59.247 55.000 5.01 0.00 41.91 3.85
767 794 0.324368 TCAGGCCATGACGTACCTCT 60.324 55.000 5.01 0.00 31.12 3.69
768 795 1.064240 TCAGGCCATGACGTACCTCTA 60.064 52.381 5.01 0.00 31.12 2.43
769 796 1.067212 CAGGCCATGACGTACCTCTAC 59.933 57.143 5.01 0.00 0.00 2.59
770 797 1.108776 GGCCATGACGTACCTCTACA 58.891 55.000 0.00 0.00 0.00 2.74
771 798 1.687123 GGCCATGACGTACCTCTACAT 59.313 52.381 0.00 0.00 0.00 2.29
772 799 2.102588 GGCCATGACGTACCTCTACATT 59.897 50.000 0.00 0.00 0.00 2.71
773 800 3.319972 GGCCATGACGTACCTCTACATTA 59.680 47.826 0.00 0.00 0.00 1.90
774 801 4.296690 GCCATGACGTACCTCTACATTAC 58.703 47.826 0.00 0.00 0.00 1.89
775 802 4.037684 GCCATGACGTACCTCTACATTACT 59.962 45.833 0.00 0.00 0.00 2.24
776 803 5.240183 GCCATGACGTACCTCTACATTACTA 59.760 44.000 0.00 0.00 0.00 1.82
777 804 6.568081 GCCATGACGTACCTCTACATTACTAG 60.568 46.154 0.00 0.00 0.00 2.57
778 805 5.998454 TGACGTACCTCTACATTACTAGC 57.002 43.478 0.00 0.00 0.00 3.42
810 837 4.829872 AATTGTGTGCATTGATGGGAAT 57.170 36.364 0.00 0.00 0.00 3.01
822 849 6.624423 GCATTGATGGGAATGTATATCTGCAC 60.624 42.308 0.00 0.00 35.98 4.57
824 851 2.766313 TGGGAATGTATATCTGCACGC 58.234 47.619 0.00 0.00 0.00 5.34
825 852 2.368548 TGGGAATGTATATCTGCACGCT 59.631 45.455 0.00 0.00 0.00 5.07
826 853 3.576550 TGGGAATGTATATCTGCACGCTA 59.423 43.478 0.00 0.00 0.00 4.26
896 923 8.948631 TTAATGCGGCAAATCCAATATAAAAA 57.051 26.923 6.82 0.00 34.01 1.94
907 934 6.524101 TCCAATATAAAAAGGCTTGTCCAC 57.476 37.500 0.00 0.00 37.29 4.02
939 966 1.747924 TCCTTCAGAGCTCACAGATCG 59.252 52.381 17.77 5.34 35.43 3.69
995 1023 8.486210 TCAACAATTAGCTAAGATGAGGTGTAT 58.514 33.333 22.20 2.56 0.00 2.29
1082 1111 2.616960 TGTTCATCGAAACCTCATCCG 58.383 47.619 0.00 0.00 0.00 4.18
1093 1122 7.438564 TCGAAACCTCATCCGATAAATAATGA 58.561 34.615 0.00 0.00 0.00 2.57
1094 1123 8.094548 TCGAAACCTCATCCGATAAATAATGAT 58.905 33.333 0.00 0.00 0.00 2.45
1095 1124 8.383619 CGAAACCTCATCCGATAAATAATGATC 58.616 37.037 0.00 0.00 0.00 2.92
1208 1239 6.117911 TGTATGTCAAACATTATTCAGCCG 57.882 37.500 0.00 0.00 39.88 5.52
1281 1312 2.345991 GGTACGGCACAGAAGGCA 59.654 61.111 0.00 0.00 0.00 4.75
1322 1353 2.984471 CGAGTGTACGTACTGCACAAAT 59.016 45.455 25.12 4.24 37.93 2.32
1516 1547 6.170506 TGAGGTGAGTTATGTGATGTTTACC 58.829 40.000 0.00 0.00 0.00 2.85
1518 1549 6.407202 AGGTGAGTTATGTGATGTTTACCTC 58.593 40.000 0.00 0.00 29.34 3.85
1559 1596 7.553044 ACGTATTGGAAAGGGAAGAAATAGAAG 59.447 37.037 0.00 0.00 0.00 2.85
1569 1606 4.316645 GAAGAAATAGAAGCGGATACCCC 58.683 47.826 0.00 0.00 0.00 4.95
1625 1842 4.449391 GCAAATGCATGCCCCATC 57.551 55.556 16.68 0.00 40.49 3.51
1631 1848 3.451004 GCATGCCCCATCGCACAA 61.451 61.111 6.36 0.00 42.70 3.33
1635 1852 1.920734 ATGCCCCATCGCACAAGGTA 61.921 55.000 0.00 0.00 42.70 3.08
1636 1853 1.377987 GCCCCATCGCACAAGGTAA 60.378 57.895 0.00 0.00 0.00 2.85
1637 1854 0.963355 GCCCCATCGCACAAGGTAAA 60.963 55.000 0.00 0.00 0.00 2.01
1638 1855 1.540267 CCCCATCGCACAAGGTAAAA 58.460 50.000 0.00 0.00 0.00 1.52
1639 1856 1.889829 CCCCATCGCACAAGGTAAAAA 59.110 47.619 0.00 0.00 0.00 1.94
1683 1947 1.851021 CTGGGATTCAAACGCACGCA 61.851 55.000 0.00 0.00 0.00 5.24
1684 1948 1.284408 GGGATTCAAACGCACGCAA 59.716 52.632 0.00 0.00 0.00 4.85
1713 1977 8.756486 AAAAAGTAATGGTGTAACAGTAAGGT 57.244 30.769 0.00 0.00 39.98 3.50
1714 1978 8.756486 AAAAGTAATGGTGTAACAGTAAGGTT 57.244 30.769 0.00 0.00 39.98 3.50
1715 1979 7.739498 AAGTAATGGTGTAACAGTAAGGTTG 57.261 36.000 0.00 0.00 39.98 3.77
1716 1980 6.834107 AGTAATGGTGTAACAGTAAGGTTGT 58.166 36.000 0.00 0.00 39.98 3.32
1717 1981 7.284820 AGTAATGGTGTAACAGTAAGGTTGTT 58.715 34.615 0.00 0.00 39.98 2.83
1718 1982 6.628919 AATGGTGTAACAGTAAGGTTGTTC 57.371 37.500 0.00 0.00 39.98 3.18
1719 1983 5.100344 TGGTGTAACAGTAAGGTTGTTCA 57.900 39.130 0.00 0.00 39.98 3.18
1721 1985 5.121105 GGTGTAACAGTAAGGTTGTTCACT 58.879 41.667 14.28 0.00 39.98 3.41
1722 1986 5.007332 GGTGTAACAGTAAGGTTGTTCACTG 59.993 44.000 14.28 0.00 43.21 3.66
1723 1987 5.007332 GTGTAACAGTAAGGTTGTTCACTGG 59.993 44.000 5.65 0.00 42.13 4.00
1724 1988 4.497291 AACAGTAAGGTTGTTCACTGGA 57.503 40.909 5.65 0.00 42.13 3.86
1725 1989 4.497291 ACAGTAAGGTTGTTCACTGGAA 57.503 40.909 5.65 0.00 42.13 3.53
1726 1990 4.850680 ACAGTAAGGTTGTTCACTGGAAA 58.149 39.130 5.65 0.00 42.13 3.13
1727 1991 5.445964 ACAGTAAGGTTGTTCACTGGAAAT 58.554 37.500 5.65 0.00 42.13 2.17
1728 1992 6.597562 ACAGTAAGGTTGTTCACTGGAAATA 58.402 36.000 5.65 0.00 42.13 1.40
1729 1993 7.231467 ACAGTAAGGTTGTTCACTGGAAATAT 58.769 34.615 5.65 0.00 42.13 1.28
1730 1994 8.380099 ACAGTAAGGTTGTTCACTGGAAATATA 58.620 33.333 5.65 0.00 42.13 0.86
1731 1995 9.226606 CAGTAAGGTTGTTCACTGGAAATATAA 57.773 33.333 0.00 0.00 35.77 0.98
1732 1996 9.975218 AGTAAGGTTGTTCACTGGAAATATAAT 57.025 29.630 0.00 0.00 34.13 1.28
1734 1998 8.877864 AAGGTTGTTCACTGGAAATATAATCA 57.122 30.769 0.00 0.00 34.13 2.57
1749 2013 7.992754 AATATAATCAAAGAGATCTGGTGGC 57.007 36.000 0.00 0.00 35.39 5.01
1802 2066 5.623169 TGGGAATTTGTAACTTCCTTACGT 58.377 37.500 11.86 0.00 40.67 3.57
1896 2189 6.347969 CGGTAACTAAGTAGTCTGCGCATATA 60.348 42.308 12.24 0.70 34.99 0.86
1945 2238 6.405278 TTCTCAATTTTCTCTTTCCCAACC 57.595 37.500 0.00 0.00 0.00 3.77
1952 2245 1.202842 TCTCTTTCCCAACCGTTTCCC 60.203 52.381 0.00 0.00 0.00 3.97
1953 2246 0.848053 TCTTTCCCAACCGTTTCCCT 59.152 50.000 0.00 0.00 0.00 4.20
2023 2316 3.214328 TCCCTCCGTACCGAAATACTAC 58.786 50.000 0.00 0.00 0.00 2.73
2024 2317 3.117888 TCCCTCCGTACCGAAATACTACT 60.118 47.826 0.00 0.00 0.00 2.57
2025 2318 4.102524 TCCCTCCGTACCGAAATACTACTA 59.897 45.833 0.00 0.00 0.00 1.82
2031 2324 8.677148 TCCGTACCGAAATACTACTAATTAGT 57.323 34.615 21.35 21.35 43.89 2.24
2089 2382 7.552330 TCAATTTTTCAGTTTCCTTTTTCCCAG 59.448 33.333 0.00 0.00 0.00 4.45
2149 2442 7.404671 TTTCAGGCAATTTTCTTATACTCCC 57.595 36.000 0.00 0.00 0.00 4.30
2150 2443 6.327386 TCAGGCAATTTTCTTATACTCCCT 57.673 37.500 0.00 0.00 0.00 4.20
2151 2444 6.357367 TCAGGCAATTTTCTTATACTCCCTC 58.643 40.000 0.00 0.00 0.00 4.30
2152 2445 6.158695 TCAGGCAATTTTCTTATACTCCCTCT 59.841 38.462 0.00 0.00 0.00 3.69
2153 2446 6.261826 CAGGCAATTTTCTTATACTCCCTCTG 59.738 42.308 0.00 0.00 0.00 3.35
2154 2447 6.069381 AGGCAATTTTCTTATACTCCCTCTGT 60.069 38.462 0.00 0.00 0.00 3.41
2155 2448 7.127339 AGGCAATTTTCTTATACTCCCTCTGTA 59.873 37.037 0.00 0.00 0.00 2.74
2156 2449 7.226918 GGCAATTTTCTTATACTCCCTCTGTAC 59.773 40.741 0.00 0.00 0.00 2.90
2157 2450 7.226918 GCAATTTTCTTATACTCCCTCTGTACC 59.773 40.741 0.00 0.00 0.00 3.34
2158 2451 6.461110 TTTTCTTATACTCCCTCTGTACCG 57.539 41.667 0.00 0.00 0.00 4.02
2159 2452 5.378230 TTCTTATACTCCCTCTGTACCGA 57.622 43.478 0.00 0.00 0.00 4.69
2160 2453 5.378230 TCTTATACTCCCTCTGTACCGAA 57.622 43.478 0.00 0.00 0.00 4.30
2161 2454 5.759059 TCTTATACTCCCTCTGTACCGAAA 58.241 41.667 0.00 0.00 0.00 3.46
2162 2455 5.826737 TCTTATACTCCCTCTGTACCGAAAG 59.173 44.000 0.00 0.00 0.00 2.62
2163 2456 2.599408 ACTCCCTCTGTACCGAAAGA 57.401 50.000 0.00 0.00 0.00 2.52
2164 2457 2.169330 ACTCCCTCTGTACCGAAAGAC 58.831 52.381 0.00 0.00 0.00 3.01
2165 2458 2.225066 ACTCCCTCTGTACCGAAAGACT 60.225 50.000 0.00 0.00 0.00 3.24
2166 2459 2.826725 CTCCCTCTGTACCGAAAGACTT 59.173 50.000 0.00 0.00 0.00 3.01
2167 2460 2.561419 TCCCTCTGTACCGAAAGACTTG 59.439 50.000 0.00 0.00 0.00 3.16
2168 2461 2.299297 CCCTCTGTACCGAAAGACTTGT 59.701 50.000 0.00 0.00 0.00 3.16
2169 2462 3.508793 CCCTCTGTACCGAAAGACTTGTA 59.491 47.826 0.00 0.00 0.00 2.41
2170 2463 4.380655 CCCTCTGTACCGAAAGACTTGTAG 60.381 50.000 0.00 0.00 0.00 2.74
2171 2464 4.217983 CCTCTGTACCGAAAGACTTGTAGT 59.782 45.833 0.00 0.00 0.00 2.73
2172 2465 5.278858 CCTCTGTACCGAAAGACTTGTAGTT 60.279 44.000 0.00 0.00 0.00 2.24
2173 2466 5.526115 TCTGTACCGAAAGACTTGTAGTTG 58.474 41.667 0.00 0.00 0.00 3.16
2174 2467 4.624015 TGTACCGAAAGACTTGTAGTTGG 58.376 43.478 0.00 0.00 0.00 3.77
2175 2468 3.121738 ACCGAAAGACTTGTAGTTGGG 57.878 47.619 0.00 0.00 0.00 4.12
2176 2469 2.224450 ACCGAAAGACTTGTAGTTGGGG 60.224 50.000 0.00 0.00 0.00 4.96
2177 2470 1.804748 CGAAAGACTTGTAGTTGGGGC 59.195 52.381 0.00 0.00 0.00 5.80
2178 2471 1.804748 GAAAGACTTGTAGTTGGGGCG 59.195 52.381 0.00 0.00 0.00 6.13
2179 2472 1.053424 AAGACTTGTAGTTGGGGCGA 58.947 50.000 0.00 0.00 0.00 5.54
2180 2473 0.320697 AGACTTGTAGTTGGGGCGAC 59.679 55.000 0.00 0.00 0.00 5.19
2197 2490 4.976987 GGCGACCATTTCTTTTATTTCGA 58.023 39.130 0.00 0.00 0.00 3.71
2198 2491 4.791676 GGCGACCATTTCTTTTATTTCGAC 59.208 41.667 0.00 0.00 0.00 4.20
2199 2492 4.791676 GCGACCATTTCTTTTATTTCGACC 59.208 41.667 0.00 0.00 0.00 4.79
2200 2493 5.618195 GCGACCATTTCTTTTATTTCGACCA 60.618 40.000 0.00 0.00 0.00 4.02
2201 2494 5.793457 CGACCATTTCTTTTATTTCGACCAC 59.207 40.000 0.00 0.00 0.00 4.16
2202 2495 6.348213 CGACCATTTCTTTTATTTCGACCACT 60.348 38.462 0.00 0.00 0.00 4.00
2203 2496 7.148540 CGACCATTTCTTTTATTTCGACCACTA 60.149 37.037 0.00 0.00 0.00 2.74
2204 2497 8.398878 ACCATTTCTTTTATTTCGACCACTAA 57.601 30.769 0.00 0.00 0.00 2.24
2205 2498 9.020731 ACCATTTCTTTTATTTCGACCACTAAT 57.979 29.630 0.00 0.00 0.00 1.73
2206 2499 9.855021 CCATTTCTTTTATTTCGACCACTAATT 57.145 29.630 0.00 0.00 0.00 1.40
2211 2504 9.496873 TCTTTTATTTCGACCACTAATTTCTCA 57.503 29.630 0.00 0.00 0.00 3.27
2212 2505 9.760660 CTTTTATTTCGACCACTAATTTCTCAG 57.239 33.333 0.00 0.00 0.00 3.35
2213 2506 8.842358 TTTATTTCGACCACTAATTTCTCAGT 57.158 30.769 0.00 0.00 0.00 3.41
2214 2507 8.842358 TTATTTCGACCACTAATTTCTCAGTT 57.158 30.769 0.00 0.00 0.00 3.16
2215 2508 6.539649 TTTCGACCACTAATTTCTCAGTTG 57.460 37.500 0.00 0.00 0.00 3.16
2216 2509 3.994392 TCGACCACTAATTTCTCAGTTGC 59.006 43.478 0.00 0.00 0.00 4.17
2217 2510 3.181530 CGACCACTAATTTCTCAGTTGCG 60.182 47.826 0.00 0.00 0.00 4.85
2218 2511 2.484264 ACCACTAATTTCTCAGTTGCGC 59.516 45.455 0.00 0.00 0.00 6.09
2219 2512 2.483877 CCACTAATTTCTCAGTTGCGCA 59.516 45.455 5.66 5.66 0.00 6.09
2220 2513 3.127548 CCACTAATTTCTCAGTTGCGCAT 59.872 43.478 12.75 0.00 0.00 4.73
2221 2514 4.093514 CACTAATTTCTCAGTTGCGCATG 58.906 43.478 12.75 8.03 0.00 4.06
2222 2515 3.753272 ACTAATTTCTCAGTTGCGCATGT 59.247 39.130 12.75 0.00 0.00 3.21
2223 2516 2.624316 ATTTCTCAGTTGCGCATGTG 57.376 45.000 12.75 12.41 0.00 3.21
2224 2517 1.308047 TTTCTCAGTTGCGCATGTGT 58.692 45.000 12.75 0.00 0.00 3.72
2225 2518 0.587768 TTCTCAGTTGCGCATGTGTG 59.412 50.000 12.75 12.81 0.00 3.82
2226 2519 0.532640 TCTCAGTTGCGCATGTGTGT 60.533 50.000 12.75 0.00 0.00 3.72
2227 2520 0.385098 CTCAGTTGCGCATGTGTGTG 60.385 55.000 12.75 3.75 38.87 3.82
2228 2521 1.094650 TCAGTTGCGCATGTGTGTGT 61.095 50.000 12.75 0.00 38.13 3.72
2229 2522 0.931202 CAGTTGCGCATGTGTGTGTG 60.931 55.000 12.75 0.00 38.13 3.82
2230 2523 1.063972 GTTGCGCATGTGTGTGTGT 59.936 52.632 12.75 0.00 38.13 3.72
2231 2524 1.063811 TTGCGCATGTGTGTGTGTG 59.936 52.632 12.75 0.00 38.13 3.82
2232 2525 1.652167 TTGCGCATGTGTGTGTGTGT 61.652 50.000 12.75 0.00 38.13 3.72
2233 2526 1.655046 GCGCATGTGTGTGTGTGTG 60.655 57.895 0.30 0.00 38.13 3.82
2234 2527 1.720894 CGCATGTGTGTGTGTGTGT 59.279 52.632 0.00 0.00 0.00 3.72
2235 2528 0.589479 CGCATGTGTGTGTGTGTGTG 60.589 55.000 0.00 0.00 0.00 3.82
2236 2529 0.866906 GCATGTGTGTGTGTGTGTGC 60.867 55.000 0.00 0.00 0.00 4.57
2237 2530 0.589479 CATGTGTGTGTGTGTGTGCG 60.589 55.000 0.00 0.00 0.00 5.34
2238 2531 1.024046 ATGTGTGTGTGTGTGTGCGT 61.024 50.000 0.00 0.00 0.00 5.24
2239 2532 1.225991 GTGTGTGTGTGTGTGCGTG 60.226 57.895 0.00 0.00 0.00 5.34
2240 2533 2.277247 GTGTGTGTGTGTGCGTGC 60.277 61.111 0.00 0.00 0.00 5.34
2241 2534 2.743928 TGTGTGTGTGTGCGTGCA 60.744 55.556 0.00 0.00 0.00 4.57
2242 2535 2.111582 TGTGTGTGTGTGCGTGCAT 61.112 52.632 0.00 0.00 0.00 3.96
2243 2536 1.655046 GTGTGTGTGTGCGTGCATG 60.655 57.895 0.09 0.09 0.00 4.06
2244 2537 2.726912 GTGTGTGTGCGTGCATGC 60.727 61.111 24.20 24.20 0.00 4.06
2245 2538 4.310788 TGTGTGTGCGTGCATGCG 62.311 61.111 25.05 9.47 37.81 4.73
2246 2539 4.312231 GTGTGTGCGTGCATGCGT 62.312 61.111 25.05 0.00 37.81 5.24
2247 2540 4.310788 TGTGTGCGTGCATGCGTG 62.311 61.111 25.05 8.99 37.81 5.34
2261 2554 4.918060 CGTGCGTGCGTGTGTGTG 62.918 66.667 0.00 0.00 0.00 3.82
2262 2555 3.860125 GTGCGTGCGTGTGTGTGT 61.860 61.111 0.00 0.00 0.00 3.72
2263 2556 3.858989 TGCGTGCGTGTGTGTGTG 61.859 61.111 0.00 0.00 0.00 3.82
2264 2557 3.860125 GCGTGCGTGTGTGTGTGT 61.860 61.111 0.00 0.00 0.00 3.72
2265 2558 2.518312 GCGTGCGTGTGTGTGTGTA 61.518 57.895 0.00 0.00 0.00 2.90
2266 2559 1.827315 GCGTGCGTGTGTGTGTGTAT 61.827 55.000 0.00 0.00 0.00 2.29
2267 2560 0.111310 CGTGCGTGTGTGTGTGTATG 60.111 55.000 0.00 0.00 0.00 2.39
2268 2561 0.934496 GTGCGTGTGTGTGTGTATGT 59.066 50.000 0.00 0.00 0.00 2.29
2269 2562 0.933796 TGCGTGTGTGTGTGTATGTG 59.066 50.000 0.00 0.00 0.00 3.21
2270 2563 0.934496 GCGTGTGTGTGTGTATGTGT 59.066 50.000 0.00 0.00 0.00 3.72
2271 2564 2.128821 GCGTGTGTGTGTGTATGTGTA 58.871 47.619 0.00 0.00 0.00 2.90
2272 2565 2.734606 GCGTGTGTGTGTGTATGTGTAT 59.265 45.455 0.00 0.00 0.00 2.29
2273 2566 3.422993 GCGTGTGTGTGTGTATGTGTATG 60.423 47.826 0.00 0.00 0.00 2.39
2274 2567 3.738791 CGTGTGTGTGTGTATGTGTATGT 59.261 43.478 0.00 0.00 0.00 2.29
2275 2568 4.375908 CGTGTGTGTGTGTATGTGTATGTG 60.376 45.833 0.00 0.00 0.00 3.21
2276 2569 4.509970 GTGTGTGTGTGTATGTGTATGTGT 59.490 41.667 0.00 0.00 0.00 3.72
2277 2570 4.509600 TGTGTGTGTGTATGTGTATGTGTG 59.490 41.667 0.00 0.00 0.00 3.82
2278 2571 4.509970 GTGTGTGTGTATGTGTATGTGTGT 59.490 41.667 0.00 0.00 0.00 3.72
2279 2572 4.509600 TGTGTGTGTATGTGTATGTGTGTG 59.490 41.667 0.00 0.00 0.00 3.82
2280 2573 4.509970 GTGTGTGTATGTGTATGTGTGTGT 59.490 41.667 0.00 0.00 0.00 3.72
2281 2574 5.692654 GTGTGTGTATGTGTATGTGTGTGTA 59.307 40.000 0.00 0.00 0.00 2.90
2282 2575 6.367695 GTGTGTGTATGTGTATGTGTGTGTAT 59.632 38.462 0.00 0.00 0.00 2.29
2283 2576 6.931840 TGTGTGTATGTGTATGTGTGTGTATT 59.068 34.615 0.00 0.00 0.00 1.89
2284 2577 8.088981 TGTGTGTATGTGTATGTGTGTGTATTA 58.911 33.333 0.00 0.00 0.00 0.98
2285 2578 8.592155 GTGTGTATGTGTATGTGTGTGTATTAG 58.408 37.037 0.00 0.00 0.00 1.73
2286 2579 8.524487 TGTGTATGTGTATGTGTGTGTATTAGA 58.476 33.333 0.00 0.00 0.00 2.10
2287 2580 9.361315 GTGTATGTGTATGTGTGTGTATTAGAA 57.639 33.333 0.00 0.00 0.00 2.10
2288 2581 9.930693 TGTATGTGTATGTGTGTGTATTAGAAA 57.069 29.630 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.093288 ACACTGCAATGATGAGGATCGT 60.093 45.455 0.26 0.00 38.61 3.73
12 13 2.558378 ACACTGCAATGATGAGGATCG 58.442 47.619 0.26 0.00 38.61 3.69
13 14 3.497640 GCTACACTGCAATGATGAGGATC 59.502 47.826 0.26 0.00 0.00 3.36
14 15 3.118149 TGCTACACTGCAATGATGAGGAT 60.118 43.478 0.26 0.00 40.29 3.24
15 16 2.236893 TGCTACACTGCAATGATGAGGA 59.763 45.455 0.26 0.00 40.29 3.71
16 17 2.635714 TGCTACACTGCAATGATGAGG 58.364 47.619 0.26 0.00 40.29 3.86
17 18 3.250280 GGATGCTACACTGCAATGATGAG 59.750 47.826 0.26 0.00 46.61 2.90
18 19 3.118149 AGGATGCTACACTGCAATGATGA 60.118 43.478 0.26 0.00 46.61 2.92
19 20 3.211865 AGGATGCTACACTGCAATGATG 58.788 45.455 0.26 0.00 46.61 3.07
20 21 3.572632 AGGATGCTACACTGCAATGAT 57.427 42.857 0.26 0.00 46.61 2.45
21 22 3.197549 TGTAGGATGCTACACTGCAATGA 59.802 43.478 21.77 0.00 46.61 2.57
22 23 3.534554 TGTAGGATGCTACACTGCAATG 58.465 45.455 21.77 0.00 46.61 2.82
23 24 3.432749 CCTGTAGGATGCTACACTGCAAT 60.433 47.826 21.77 0.00 46.61 3.56
24 25 2.093500 CCTGTAGGATGCTACACTGCAA 60.093 50.000 21.77 1.62 46.61 4.08
25 26 4.373702 GCCTGTAGGATGCTACACTGCA 62.374 54.545 26.24 9.35 40.62 4.41
26 27 1.808133 GCCTGTAGGATGCTACACTGC 60.808 57.143 21.77 21.26 36.07 4.40
27 28 1.482182 TGCCTGTAGGATGCTACACTG 59.518 52.381 21.77 16.39 36.07 3.66
28 29 1.866015 TGCCTGTAGGATGCTACACT 58.134 50.000 21.77 0.00 36.07 3.55
29 30 2.691409 TTGCCTGTAGGATGCTACAC 57.309 50.000 21.77 14.15 36.07 2.90
30 31 2.746142 GCATTGCCTGTAGGATGCTACA 60.746 50.000 23.66 23.66 40.37 2.74
31 32 1.876156 GCATTGCCTGTAGGATGCTAC 59.124 52.381 16.85 16.85 40.37 3.58
32 33 1.541015 CGCATTGCCTGTAGGATGCTA 60.541 52.381 17.41 0.00 40.97 3.49
33 34 0.816825 CGCATTGCCTGTAGGATGCT 60.817 55.000 17.41 0.00 40.97 3.79
34 35 1.097547 ACGCATTGCCTGTAGGATGC 61.098 55.000 12.29 12.29 40.22 3.91
35 36 0.940126 GACGCATTGCCTGTAGGATG 59.060 55.000 2.41 0.00 37.39 3.51
36 37 0.833287 AGACGCATTGCCTGTAGGAT 59.167 50.000 2.41 0.00 37.39 3.24
37 38 0.175760 GAGACGCATTGCCTGTAGGA 59.824 55.000 2.41 0.00 37.39 2.94
38 39 0.108186 TGAGACGCATTGCCTGTAGG 60.108 55.000 2.41 0.00 38.53 3.18
39 40 1.725641 TTGAGACGCATTGCCTGTAG 58.274 50.000 2.41 0.00 0.00 2.74
40 41 2.401583 ATTGAGACGCATTGCCTGTA 57.598 45.000 2.41 0.00 0.00 2.74
41 42 1.200716 CAATTGAGACGCATTGCCTGT 59.799 47.619 0.00 0.00 0.00 4.00
42 43 1.904144 CAATTGAGACGCATTGCCTG 58.096 50.000 0.00 0.00 0.00 4.85
43 44 0.171903 GCAATTGAGACGCATTGCCT 59.828 50.000 10.34 0.00 42.36 4.75
44 45 0.109179 TGCAATTGAGACGCATTGCC 60.109 50.000 10.34 0.00 46.18 4.52
45 46 1.265568 CTGCAATTGAGACGCATTGC 58.734 50.000 10.34 9.56 46.71 3.56
46 47 2.624316 ACTGCAATTGAGACGCATTG 57.376 45.000 10.34 0.00 34.63 2.82
47 48 3.073678 TGTACTGCAATTGAGACGCATT 58.926 40.909 10.34 0.00 34.63 3.56
48 49 2.674852 CTGTACTGCAATTGAGACGCAT 59.325 45.455 10.34 0.00 34.63 4.73
49 50 2.068519 CTGTACTGCAATTGAGACGCA 58.931 47.619 10.34 0.00 0.00 5.24
50 51 1.201965 GCTGTACTGCAATTGAGACGC 60.202 52.381 18.75 5.38 0.00 5.19
51 52 1.059692 CGCTGTACTGCAATTGAGACG 59.940 52.381 22.49 1.47 0.00 4.18
52 53 1.394917 CCGCTGTACTGCAATTGAGAC 59.605 52.381 22.49 1.22 0.00 3.36
71 72 2.109126 GTGCACTCCGAGATTGGCC 61.109 63.158 10.32 0.00 0.00 5.36
268 290 1.492176 GAGCTCCTTTCCATCCATCCA 59.508 52.381 0.87 0.00 0.00 3.41
275 297 0.393537 CTTGGCGAGCTCCTTTCCAT 60.394 55.000 8.47 0.00 0.00 3.41
277 299 1.746991 CCTTGGCGAGCTCCTTTCC 60.747 63.158 8.47 5.13 0.00 3.13
278 300 1.746991 CCCTTGGCGAGCTCCTTTC 60.747 63.158 8.47 0.00 0.00 2.62
279 301 2.352805 CCCTTGGCGAGCTCCTTT 59.647 61.111 8.47 0.00 0.00 3.11
304 326 1.569479 GCTGCCGCGAGTTCTTTCTT 61.569 55.000 8.23 0.00 0.00 2.52
456 481 0.738389 AGAAACAAACACACCGCTGG 59.262 50.000 0.00 0.00 0.00 4.85
470 495 2.258726 GGTGGACGTGGGCAGAAAC 61.259 63.158 0.00 0.00 0.00 2.78
474 499 0.462047 GAATAGGTGGACGTGGGCAG 60.462 60.000 0.00 0.00 0.00 4.85
495 522 1.476007 GGGCTGGATCATAGCGGACT 61.476 60.000 13.11 0.00 42.03 3.85
500 527 0.106708 TTCGTGGGCTGGATCATAGC 59.893 55.000 11.56 11.56 40.41 2.97
570 597 9.042008 GCGTGTGGAGAAATTAATAAGAGATTA 57.958 33.333 0.00 0.00 0.00 1.75
571 598 7.552687 TGCGTGTGGAGAAATTAATAAGAGATT 59.447 33.333 0.00 0.00 0.00 2.40
572 599 7.047891 TGCGTGTGGAGAAATTAATAAGAGAT 58.952 34.615 0.00 0.00 0.00 2.75
573 600 6.403049 TGCGTGTGGAGAAATTAATAAGAGA 58.597 36.000 0.00 0.00 0.00 3.10
574 601 6.662414 TGCGTGTGGAGAAATTAATAAGAG 57.338 37.500 0.00 0.00 0.00 2.85
575 602 6.260050 GGATGCGTGTGGAGAAATTAATAAGA 59.740 38.462 0.00 0.00 0.00 2.10
576 603 6.038161 TGGATGCGTGTGGAGAAATTAATAAG 59.962 38.462 0.00 0.00 0.00 1.73
577 604 5.883115 TGGATGCGTGTGGAGAAATTAATAA 59.117 36.000 0.00 0.00 0.00 1.40
578 605 5.432645 TGGATGCGTGTGGAGAAATTAATA 58.567 37.500 0.00 0.00 0.00 0.98
579 606 4.269183 TGGATGCGTGTGGAGAAATTAAT 58.731 39.130 0.00 0.00 0.00 1.40
580 607 3.680490 TGGATGCGTGTGGAGAAATTAA 58.320 40.909 0.00 0.00 0.00 1.40
581 608 3.342377 TGGATGCGTGTGGAGAAATTA 57.658 42.857 0.00 0.00 0.00 1.40
582 609 2.198827 TGGATGCGTGTGGAGAAATT 57.801 45.000 0.00 0.00 0.00 1.82
583 610 2.425143 ATGGATGCGTGTGGAGAAAT 57.575 45.000 0.00 0.00 0.00 2.17
584 611 2.198827 AATGGATGCGTGTGGAGAAA 57.801 45.000 0.00 0.00 0.00 2.52
585 612 2.198827 AAATGGATGCGTGTGGAGAA 57.801 45.000 0.00 0.00 0.00 2.87
586 613 2.198827 AAAATGGATGCGTGTGGAGA 57.801 45.000 0.00 0.00 0.00 3.71
633 660 7.573968 AGCGAAGGAAAGATATATGCTTTTT 57.426 32.000 9.88 4.29 35.83 1.94
634 661 7.500559 AGAAGCGAAGGAAAGATATATGCTTTT 59.499 33.333 9.88 0.97 39.95 2.27
635 662 6.995091 AGAAGCGAAGGAAAGATATATGCTTT 59.005 34.615 8.84 8.84 39.95 3.51
636 663 6.529220 AGAAGCGAAGGAAAGATATATGCTT 58.471 36.000 0.00 0.00 42.28 3.91
637 664 6.107901 AGAAGCGAAGGAAAGATATATGCT 57.892 37.500 0.00 0.00 0.00 3.79
638 665 5.928839 TGAGAAGCGAAGGAAAGATATATGC 59.071 40.000 0.00 0.00 0.00 3.14
639 666 6.367422 GGTGAGAAGCGAAGGAAAGATATATG 59.633 42.308 0.00 0.00 0.00 1.78
640 667 6.459923 GGTGAGAAGCGAAGGAAAGATATAT 58.540 40.000 0.00 0.00 0.00 0.86
641 668 5.221461 GGGTGAGAAGCGAAGGAAAGATATA 60.221 44.000 0.00 0.00 0.00 0.86
642 669 4.443598 GGGTGAGAAGCGAAGGAAAGATAT 60.444 45.833 0.00 0.00 0.00 1.63
643 670 3.118738 GGGTGAGAAGCGAAGGAAAGATA 60.119 47.826 0.00 0.00 0.00 1.98
644 671 2.355209 GGGTGAGAAGCGAAGGAAAGAT 60.355 50.000 0.00 0.00 0.00 2.40
645 672 1.002087 GGGTGAGAAGCGAAGGAAAGA 59.998 52.381 0.00 0.00 0.00 2.52
646 673 1.443802 GGGTGAGAAGCGAAGGAAAG 58.556 55.000 0.00 0.00 0.00 2.62
647 674 0.036306 GGGGTGAGAAGCGAAGGAAA 59.964 55.000 0.00 0.00 0.00 3.13
648 675 1.677552 GGGGTGAGAAGCGAAGGAA 59.322 57.895 0.00 0.00 0.00 3.36
649 676 2.291043 GGGGGTGAGAAGCGAAGGA 61.291 63.158 0.00 0.00 0.00 3.36
650 677 2.269241 GGGGGTGAGAAGCGAAGG 59.731 66.667 0.00 0.00 0.00 3.46
701 728 8.840321 CGTTGTCTCCTTTGGATAATTATGATT 58.160 33.333 1.78 0.00 0.00 2.57
702 729 7.993183 ACGTTGTCTCCTTTGGATAATTATGAT 59.007 33.333 1.78 0.00 0.00 2.45
703 730 7.335627 ACGTTGTCTCCTTTGGATAATTATGA 58.664 34.615 1.78 0.00 0.00 2.15
704 731 7.553881 ACGTTGTCTCCTTTGGATAATTATG 57.446 36.000 1.78 0.00 0.00 1.90
705 732 8.575649 AAACGTTGTCTCCTTTGGATAATTAT 57.424 30.769 0.00 0.00 0.00 1.28
706 733 7.989416 AAACGTTGTCTCCTTTGGATAATTA 57.011 32.000 0.00 0.00 0.00 1.40
707 734 6.894339 AAACGTTGTCTCCTTTGGATAATT 57.106 33.333 0.00 0.00 0.00 1.40
708 735 6.715264 AGAAAACGTTGTCTCCTTTGGATAAT 59.285 34.615 15.47 0.00 0.00 1.28
709 736 6.059484 AGAAAACGTTGTCTCCTTTGGATAA 58.941 36.000 15.47 0.00 0.00 1.75
710 737 5.617252 AGAAAACGTTGTCTCCTTTGGATA 58.383 37.500 15.47 0.00 0.00 2.59
711 738 4.461198 AGAAAACGTTGTCTCCTTTGGAT 58.539 39.130 15.47 0.00 0.00 3.41
712 739 3.881220 AGAAAACGTTGTCTCCTTTGGA 58.119 40.909 15.47 0.00 0.00 3.53
713 740 4.632538 AAGAAAACGTTGTCTCCTTTGG 57.367 40.909 21.08 0.00 0.00 3.28
714 741 6.944557 AAAAAGAAAACGTTGTCTCCTTTG 57.055 33.333 21.08 0.00 0.00 2.77
734 761 5.951148 TCATGGCCTGATGAGTCATTAAAAA 59.049 36.000 7.16 0.00 32.98 1.94
735 762 5.357878 GTCATGGCCTGATGAGTCATTAAAA 59.642 40.000 7.16 0.00 35.97 1.52
736 763 4.883585 GTCATGGCCTGATGAGTCATTAAA 59.116 41.667 7.16 0.00 35.97 1.52
737 764 4.454678 GTCATGGCCTGATGAGTCATTAA 58.545 43.478 7.16 0.00 35.97 1.40
738 765 3.493176 CGTCATGGCCTGATGAGTCATTA 60.493 47.826 7.16 1.77 42.57 1.90
739 766 2.744166 CGTCATGGCCTGATGAGTCATT 60.744 50.000 7.16 0.00 42.57 2.57
740 767 1.202615 CGTCATGGCCTGATGAGTCAT 60.203 52.381 4.98 4.98 42.57 3.06
741 768 0.176449 CGTCATGGCCTGATGAGTCA 59.824 55.000 15.46 0.00 42.57 3.41
742 769 0.176680 ACGTCATGGCCTGATGAGTC 59.823 55.000 23.20 7.28 42.57 3.36
743 770 1.137086 GTACGTCATGGCCTGATGAGT 59.863 52.381 23.20 16.64 42.57 3.41
744 771 1.539065 GGTACGTCATGGCCTGATGAG 60.539 57.143 23.20 13.03 42.57 2.90
745 772 0.464036 GGTACGTCATGGCCTGATGA 59.536 55.000 23.20 14.58 42.57 2.92
746 773 0.465705 AGGTACGTCATGGCCTGATG 59.534 55.000 17.73 17.73 44.99 3.07
747 774 0.753262 GAGGTACGTCATGGCCTGAT 59.247 55.000 10.63 0.00 35.97 2.90
748 775 0.324368 AGAGGTACGTCATGGCCTGA 60.324 55.000 17.27 2.06 0.00 3.86
749 776 1.067212 GTAGAGGTACGTCATGGCCTG 59.933 57.143 17.27 0.00 0.00 4.85
750 777 1.341679 TGTAGAGGTACGTCATGGCCT 60.342 52.381 17.27 0.00 30.95 5.19
751 778 1.108776 TGTAGAGGTACGTCATGGCC 58.891 55.000 17.27 0.00 30.95 5.36
752 779 3.454371 AATGTAGAGGTACGTCATGGC 57.546 47.619 17.27 0.00 30.95 4.40
753 780 5.769484 AGTAATGTAGAGGTACGTCATGG 57.231 43.478 17.27 0.00 30.95 3.66
754 781 6.372185 GCTAGTAATGTAGAGGTACGTCATG 58.628 44.000 17.27 0.00 30.95 3.07
755 782 5.178996 CGCTAGTAATGTAGAGGTACGTCAT 59.821 44.000 17.27 5.72 30.95 3.06
756 783 4.509230 CGCTAGTAATGTAGAGGTACGTCA 59.491 45.833 17.27 0.00 30.95 4.35
757 784 4.509600 ACGCTAGTAATGTAGAGGTACGTC 59.490 45.833 7.49 7.49 30.95 4.34
758 785 4.272018 CACGCTAGTAATGTAGAGGTACGT 59.728 45.833 0.00 0.00 30.95 3.57
759 786 4.272018 ACACGCTAGTAATGTAGAGGTACG 59.728 45.833 0.00 0.00 30.95 3.67
760 787 5.747951 ACACGCTAGTAATGTAGAGGTAC 57.252 43.478 0.00 0.00 0.00 3.34
761 788 6.348498 TGTACACGCTAGTAATGTAGAGGTA 58.652 40.000 0.00 0.00 29.67 3.08
762 789 5.188434 TGTACACGCTAGTAATGTAGAGGT 58.812 41.667 0.00 0.00 29.67 3.85
763 790 5.746307 TGTACACGCTAGTAATGTAGAGG 57.254 43.478 0.00 0.00 29.67 3.69
764 791 9.726232 TTTATTGTACACGCTAGTAATGTAGAG 57.274 33.333 0.00 0.00 29.67 2.43
810 837 5.472137 TCATGTAGTAGCGTGCAGATATACA 59.528 40.000 0.00 0.00 0.00 2.29
868 895 2.292103 TGGATTTGCCGCATTAAAGC 57.708 45.000 0.00 0.00 40.66 3.51
896 923 1.705186 ACCAACATAGTGGACAAGCCT 59.295 47.619 0.00 0.00 41.65 4.58
907 934 4.081198 AGCTCTGAAGGAGAACCAACATAG 60.081 45.833 0.00 0.00 44.45 2.23
939 966 0.107654 AGACTTGCCGATAGTTGCCC 60.108 55.000 0.00 0.00 0.00 5.36
995 1023 0.899717 GGGCAGGAGCAACATTTGGA 60.900 55.000 0.00 0.00 44.61 3.53
1066 1094 7.652300 TTATTTATCGGATGAGGTTTCGATG 57.348 36.000 0.00 0.00 41.57 3.84
1067 1095 8.094548 TCATTATTTATCGGATGAGGTTTCGAT 58.905 33.333 0.00 0.00 43.48 3.59
1110 1139 4.500499 AATCCCAACATGAGGAAGAGAG 57.500 45.455 0.00 0.00 35.30 3.20
1208 1239 1.378531 TATCACATGGCTTTGGCGAC 58.621 50.000 0.00 0.00 39.81 5.19
1281 1312 0.395312 CACCCCTCGGTAACACACTT 59.605 55.000 0.00 0.00 42.04 3.16
1302 1333 4.377022 CCAATTTGTGCAGTACGTACACTC 60.377 45.833 26.55 18.04 40.23 3.51
1322 1353 0.109532 TTGATTGTCGTGGAGGCCAA 59.890 50.000 5.01 0.00 34.18 4.52
1424 1455 9.154847 CTTCATATGACTTATCAGTGAACAACA 57.845 33.333 4.48 0.00 37.96 3.33
1534 1571 7.467403 GCTTCTATTTCTTCCCTTTCCAATACG 60.467 40.741 0.00 0.00 0.00 3.06
1641 1858 6.807160 GCTACCGCAAACGAACTTTTTCGA 62.807 45.833 13.37 0.00 45.76 3.71
1642 1859 4.670445 GCTACCGCAAACGAACTTTTTCG 61.670 47.826 5.28 5.28 46.97 3.46
1643 1860 2.717519 GCTACCGCAAACGAACTTTTTC 59.282 45.455 0.00 0.00 43.93 2.29
1656 1920 0.326595 TTTGAATCCCAGCTACCGCA 59.673 50.000 0.00 0.00 39.10 5.69
1688 1952 8.756486 ACCTTACTGTTACACCATTACTTTTT 57.244 30.769 0.00 0.00 0.00 1.94
1689 1953 8.626526 CAACCTTACTGTTACACCATTACTTTT 58.373 33.333 0.00 0.00 0.00 2.27
1690 1954 7.776500 ACAACCTTACTGTTACACCATTACTTT 59.224 33.333 0.00 0.00 0.00 2.66
1691 1955 7.284820 ACAACCTTACTGTTACACCATTACTT 58.715 34.615 0.00 0.00 0.00 2.24
1692 1956 6.834107 ACAACCTTACTGTTACACCATTACT 58.166 36.000 0.00 0.00 0.00 2.24
1693 1957 7.227116 TGAACAACCTTACTGTTACACCATTAC 59.773 37.037 0.00 0.00 37.14 1.89
1694 1958 7.227116 GTGAACAACCTTACTGTTACACCATTA 59.773 37.037 0.00 0.00 37.14 1.90
1695 1959 6.038936 GTGAACAACCTTACTGTTACACCATT 59.961 38.462 0.00 0.00 37.14 3.16
1696 1960 5.529800 GTGAACAACCTTACTGTTACACCAT 59.470 40.000 0.00 0.00 37.14 3.55
1697 1961 4.877251 GTGAACAACCTTACTGTTACACCA 59.123 41.667 0.00 0.00 37.14 4.17
1698 1962 5.007332 CAGTGAACAACCTTACTGTTACACC 59.993 44.000 0.00 0.00 37.14 4.16
1700 1964 5.104859 TCCAGTGAACAACCTTACTGTTACA 60.105 40.000 0.00 0.00 39.02 2.41
1701 1965 5.362263 TCCAGTGAACAACCTTACTGTTAC 58.638 41.667 0.00 0.00 39.02 2.50
1703 1967 4.497291 TCCAGTGAACAACCTTACTGTT 57.503 40.909 0.00 0.00 39.02 3.16
1704 1968 4.497291 TTCCAGTGAACAACCTTACTGT 57.503 40.909 0.00 0.00 39.02 3.55
1705 1969 7.687941 ATATTTCCAGTGAACAACCTTACTG 57.312 36.000 0.00 0.00 40.06 2.74
1706 1970 9.975218 ATTATATTTCCAGTGAACAACCTTACT 57.025 29.630 0.00 0.00 0.00 2.24
1710 1974 8.877864 TTGATTATATTTCCAGTGAACAACCT 57.122 30.769 0.00 0.00 0.00 3.50
1711 1975 9.573133 CTTTGATTATATTTCCAGTGAACAACC 57.427 33.333 0.00 0.00 0.00 3.77
1714 1978 9.958180 TCTCTTTGATTATATTTCCAGTGAACA 57.042 29.630 0.00 0.00 0.00 3.18
1719 1983 9.790344 CCAGATCTCTTTGATTATATTTCCAGT 57.210 33.333 0.00 0.00 35.14 4.00
1721 1985 9.565090 CACCAGATCTCTTTGATTATATTTCCA 57.435 33.333 0.00 0.00 35.14 3.53
1722 1986 9.007901 CCACCAGATCTCTTTGATTATATTTCC 57.992 37.037 0.00 0.00 35.14 3.13
1723 1987 8.510505 GCCACCAGATCTCTTTGATTATATTTC 58.489 37.037 0.00 0.00 35.14 2.17
1724 1988 8.000709 TGCCACCAGATCTCTTTGATTATATTT 58.999 33.333 0.00 0.00 35.14 1.40
1725 1989 7.520798 TGCCACCAGATCTCTTTGATTATATT 58.479 34.615 0.00 0.00 35.14 1.28
1726 1990 7.016957 TCTGCCACCAGATCTCTTTGATTATAT 59.983 37.037 0.00 0.00 42.98 0.86
1727 1991 6.327365 TCTGCCACCAGATCTCTTTGATTATA 59.673 38.462 0.00 0.00 42.98 0.98
1728 1992 5.131642 TCTGCCACCAGATCTCTTTGATTAT 59.868 40.000 0.00 0.00 42.98 1.28
1729 1993 4.471025 TCTGCCACCAGATCTCTTTGATTA 59.529 41.667 0.00 0.00 42.98 1.75
1730 1994 3.265221 TCTGCCACCAGATCTCTTTGATT 59.735 43.478 0.00 0.00 42.98 2.57
1731 1995 2.842496 TCTGCCACCAGATCTCTTTGAT 59.158 45.455 0.00 0.00 42.98 2.57
1732 1996 2.259917 TCTGCCACCAGATCTCTTTGA 58.740 47.619 0.00 0.00 42.98 2.69
1733 1997 2.775911 TCTGCCACCAGATCTCTTTG 57.224 50.000 0.00 0.00 42.98 2.77
1749 2013 9.110617 CTTTTTAATACTTGCGATGCATATCTG 57.889 33.333 0.00 0.00 38.76 2.90
1802 2066 6.419484 TCGGATCTAATGCTAAAATCCTCA 57.581 37.500 0.00 0.00 34.90 3.86
1842 2133 5.984233 AAGAAAATTGCCGAAAAGGAAAC 57.016 34.783 0.00 0.00 41.32 2.78
1847 2138 7.739911 CCGAAATAAAAGAAAATTGCCGAAAAG 59.260 33.333 0.00 0.00 0.00 2.27
1927 2220 5.452776 GGAAACGGTTGGGAAAGAGAAAATT 60.453 40.000 0.00 0.00 0.00 1.82
1928 2221 4.038763 GGAAACGGTTGGGAAAGAGAAAAT 59.961 41.667 0.00 0.00 0.00 1.82
1935 2228 1.699730 AAGGGAAACGGTTGGGAAAG 58.300 50.000 0.00 0.00 0.00 2.62
1983 2276 4.086457 GGGAGTAAAAGGAAATGGCAGAA 58.914 43.478 0.00 0.00 0.00 3.02
1984 2277 3.333680 AGGGAGTAAAAGGAAATGGCAGA 59.666 43.478 0.00 0.00 0.00 4.26
1985 2278 3.696548 GAGGGAGTAAAAGGAAATGGCAG 59.303 47.826 0.00 0.00 0.00 4.85
1986 2279 3.563479 GGAGGGAGTAAAAGGAAATGGCA 60.563 47.826 0.00 0.00 0.00 4.92
1987 2280 3.024547 GGAGGGAGTAAAAGGAAATGGC 58.975 50.000 0.00 0.00 0.00 4.40
1994 2287 2.975732 GGTACGGAGGGAGTAAAAGG 57.024 55.000 0.00 0.00 0.00 3.11
2031 2324 7.744087 AAGGAAACATAATTATATGCGCAGA 57.256 32.000 18.32 13.18 42.26 4.26
2066 2359 5.822519 GCTGGGAAAAAGGAAACTGAAAAAT 59.177 36.000 0.00 0.00 42.68 1.82
2070 2363 2.698274 GGCTGGGAAAAAGGAAACTGAA 59.302 45.455 0.00 0.00 42.68 3.02
2128 2421 6.261826 CAGAGGGAGTATAAGAAAATTGCCTG 59.738 42.308 0.00 0.00 0.00 4.85
2129 2422 6.069381 ACAGAGGGAGTATAAGAAAATTGCCT 60.069 38.462 0.00 0.00 0.00 4.75
2138 2431 5.378230 TTCGGTACAGAGGGAGTATAAGA 57.622 43.478 0.00 0.00 0.00 2.10
2144 2437 2.169330 GTCTTTCGGTACAGAGGGAGT 58.831 52.381 0.00 0.00 0.00 3.85
2145 2438 2.448453 AGTCTTTCGGTACAGAGGGAG 58.552 52.381 0.00 0.00 0.00 4.30
2146 2439 2.561419 CAAGTCTTTCGGTACAGAGGGA 59.439 50.000 0.00 0.00 0.00 4.20
2147 2440 2.299297 ACAAGTCTTTCGGTACAGAGGG 59.701 50.000 0.00 0.00 0.00 4.30
2148 2441 3.662247 ACAAGTCTTTCGGTACAGAGG 57.338 47.619 0.00 0.00 0.00 3.69
2149 2442 5.373981 ACTACAAGTCTTTCGGTACAGAG 57.626 43.478 0.00 0.00 0.00 3.35
2150 2443 5.508489 CCAACTACAAGTCTTTCGGTACAGA 60.508 44.000 0.00 0.00 0.00 3.41
2151 2444 4.684703 CCAACTACAAGTCTTTCGGTACAG 59.315 45.833 0.00 0.00 0.00 2.74
2152 2445 4.501915 CCCAACTACAAGTCTTTCGGTACA 60.502 45.833 0.00 0.00 0.00 2.90
2153 2446 3.992427 CCCAACTACAAGTCTTTCGGTAC 59.008 47.826 0.00 0.00 0.00 3.34
2154 2447 3.007182 CCCCAACTACAAGTCTTTCGGTA 59.993 47.826 0.00 0.00 0.00 4.02
2155 2448 2.224450 CCCCAACTACAAGTCTTTCGGT 60.224 50.000 0.00 0.00 0.00 4.69
2156 2449 2.423577 CCCCAACTACAAGTCTTTCGG 58.576 52.381 0.00 0.00 0.00 4.30
2157 2450 1.804748 GCCCCAACTACAAGTCTTTCG 59.195 52.381 0.00 0.00 0.00 3.46
2158 2451 1.804748 CGCCCCAACTACAAGTCTTTC 59.195 52.381 0.00 0.00 0.00 2.62
2159 2452 1.418637 TCGCCCCAACTACAAGTCTTT 59.581 47.619 0.00 0.00 0.00 2.52
2160 2453 1.053424 TCGCCCCAACTACAAGTCTT 58.947 50.000 0.00 0.00 0.00 3.01
2161 2454 0.320697 GTCGCCCCAACTACAAGTCT 59.679 55.000 0.00 0.00 0.00 3.24
2162 2455 0.672711 GGTCGCCCCAACTACAAGTC 60.673 60.000 0.00 0.00 0.00 3.01
2163 2456 1.373812 GGTCGCCCCAACTACAAGT 59.626 57.895 0.00 0.00 0.00 3.16
2164 2457 1.373435 TGGTCGCCCCAACTACAAG 59.627 57.895 0.00 0.00 41.50 3.16
2165 2458 3.564775 TGGTCGCCCCAACTACAA 58.435 55.556 0.00 0.00 41.50 2.41
2173 2466 4.430007 GAAATAAAAGAAATGGTCGCCCC 58.570 43.478 0.00 0.00 0.00 5.80
2174 2467 4.102649 CGAAATAAAAGAAATGGTCGCCC 58.897 43.478 0.00 0.00 0.00 6.13
2175 2468 4.791676 GTCGAAATAAAAGAAATGGTCGCC 59.208 41.667 0.00 0.00 0.00 5.54
2176 2469 4.791676 GGTCGAAATAAAAGAAATGGTCGC 59.208 41.667 0.00 0.00 0.00 5.19
2177 2470 5.793457 GTGGTCGAAATAAAAGAAATGGTCG 59.207 40.000 0.00 0.00 0.00 4.79
2178 2471 6.909909 AGTGGTCGAAATAAAAGAAATGGTC 58.090 36.000 0.00 0.00 0.00 4.02
2179 2472 6.894339 AGTGGTCGAAATAAAAGAAATGGT 57.106 33.333 0.00 0.00 0.00 3.55
2180 2473 9.855021 AATTAGTGGTCGAAATAAAAGAAATGG 57.145 29.630 0.00 0.00 0.00 3.16
2185 2478 9.496873 TGAGAAATTAGTGGTCGAAATAAAAGA 57.503 29.630 0.00 0.00 0.00 2.52
2186 2479 9.760660 CTGAGAAATTAGTGGTCGAAATAAAAG 57.239 33.333 0.00 0.00 0.00 2.27
2187 2480 9.280174 ACTGAGAAATTAGTGGTCGAAATAAAA 57.720 29.630 0.00 0.00 0.00 1.52
2188 2481 8.842358 ACTGAGAAATTAGTGGTCGAAATAAA 57.158 30.769 0.00 0.00 0.00 1.40
2189 2482 8.717821 CAACTGAGAAATTAGTGGTCGAAATAA 58.282 33.333 0.00 0.00 0.00 1.40
2190 2483 7.148474 GCAACTGAGAAATTAGTGGTCGAAATA 60.148 37.037 0.00 0.00 0.00 1.40
2191 2484 6.348540 GCAACTGAGAAATTAGTGGTCGAAAT 60.349 38.462 0.00 0.00 0.00 2.17
2192 2485 5.049680 GCAACTGAGAAATTAGTGGTCGAAA 60.050 40.000 0.00 0.00 0.00 3.46
2193 2486 4.451096 GCAACTGAGAAATTAGTGGTCGAA 59.549 41.667 0.00 0.00 0.00 3.71
2194 2487 3.994392 GCAACTGAGAAATTAGTGGTCGA 59.006 43.478 0.00 0.00 0.00 4.20
2195 2488 3.181530 CGCAACTGAGAAATTAGTGGTCG 60.182 47.826 0.00 0.00 0.00 4.79
2196 2489 3.424962 GCGCAACTGAGAAATTAGTGGTC 60.425 47.826 0.30 0.00 0.00 4.02
2197 2490 2.484264 GCGCAACTGAGAAATTAGTGGT 59.516 45.455 0.30 0.00 0.00 4.16
2198 2491 2.483877 TGCGCAACTGAGAAATTAGTGG 59.516 45.455 8.16 0.00 0.00 4.00
2199 2492 3.811722 TGCGCAACTGAGAAATTAGTG 57.188 42.857 8.16 0.00 0.00 2.74
2200 2493 3.753272 ACATGCGCAACTGAGAAATTAGT 59.247 39.130 17.11 0.00 0.00 2.24
2201 2494 4.093514 CACATGCGCAACTGAGAAATTAG 58.906 43.478 17.11 0.00 0.00 1.73
2202 2495 3.501828 ACACATGCGCAACTGAGAAATTA 59.498 39.130 17.11 0.00 0.00 1.40
2203 2496 2.294233 ACACATGCGCAACTGAGAAATT 59.706 40.909 17.11 0.00 0.00 1.82
2204 2497 1.881973 ACACATGCGCAACTGAGAAAT 59.118 42.857 17.11 0.00 0.00 2.17
2205 2498 1.002576 CACACATGCGCAACTGAGAAA 60.003 47.619 17.11 0.00 0.00 2.52
2206 2499 0.587768 CACACATGCGCAACTGAGAA 59.412 50.000 17.11 0.00 0.00 2.87
2207 2500 0.532640 ACACACATGCGCAACTGAGA 60.533 50.000 17.11 0.00 0.00 3.27
2208 2501 0.385098 CACACACATGCGCAACTGAG 60.385 55.000 17.11 13.63 0.00 3.35
2209 2502 1.094650 ACACACACATGCGCAACTGA 61.095 50.000 17.11 0.00 0.00 3.41
2210 2503 0.931202 CACACACACATGCGCAACTG 60.931 55.000 17.11 15.40 0.00 3.16
2211 2504 1.356270 CACACACACATGCGCAACT 59.644 52.632 17.11 0.00 0.00 3.16
2212 2505 1.063972 ACACACACACATGCGCAAC 59.936 52.632 17.11 0.00 0.00 4.17
2213 2506 1.063811 CACACACACACATGCGCAA 59.936 52.632 17.11 0.00 0.00 4.85
2214 2507 2.111582 ACACACACACACATGCGCA 61.112 52.632 14.96 14.96 0.00 6.09
2215 2508 1.655046 CACACACACACACATGCGC 60.655 57.895 0.00 0.00 0.00 6.09
2216 2509 0.589479 CACACACACACACACATGCG 60.589 55.000 0.00 0.00 0.00 4.73
2217 2510 0.866906 GCACACACACACACACATGC 60.867 55.000 0.00 0.00 0.00 4.06
2218 2511 0.589479 CGCACACACACACACACATG 60.589 55.000 0.00 0.00 0.00 3.21
2219 2512 1.024046 ACGCACACACACACACACAT 61.024 50.000 0.00 0.00 0.00 3.21
2220 2513 1.669437 ACGCACACACACACACACA 60.669 52.632 0.00 0.00 0.00 3.72
2221 2514 1.225991 CACGCACACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
2222 2515 3.033166 GCACGCACACACACACACA 62.033 57.895 0.00 0.00 0.00 3.72
2223 2516 2.277247 GCACGCACACACACACAC 60.277 61.111 0.00 0.00 0.00 3.82
2224 2517 2.111582 ATGCACGCACACACACACA 61.112 52.632 0.00 0.00 0.00 3.72
2225 2518 1.655046 CATGCACGCACACACACAC 60.655 57.895 0.00 0.00 0.00 3.82
2226 2519 2.714387 CATGCACGCACACACACA 59.286 55.556 0.00 0.00 0.00 3.72
2227 2520 2.726912 GCATGCACGCACACACAC 60.727 61.111 14.21 0.00 0.00 3.82
2228 2521 4.310788 CGCATGCACGCACACACA 62.311 61.111 19.57 0.00 0.00 3.72
2229 2522 4.312231 ACGCATGCACGCACACAC 62.312 61.111 19.57 0.00 36.19 3.82
2230 2523 4.310788 CACGCATGCACGCACACA 62.311 61.111 19.57 0.00 36.19 3.72
2244 2537 4.918060 CACACACACGCACGCACG 62.918 66.667 0.00 0.00 39.50 5.34
2245 2538 3.860125 ACACACACACGCACGCAC 61.860 61.111 0.00 0.00 0.00 5.34
2246 2539 3.858989 CACACACACACGCACGCA 61.859 61.111 0.00 0.00 0.00 5.24
2247 2540 1.827315 ATACACACACACACGCACGC 61.827 55.000 0.00 0.00 0.00 5.34
2248 2541 0.111310 CATACACACACACACGCACG 60.111 55.000 0.00 0.00 0.00 5.34
2249 2542 0.934496 ACATACACACACACACGCAC 59.066 50.000 0.00 0.00 0.00 5.34
2250 2543 0.933796 CACATACACACACACACGCA 59.066 50.000 0.00 0.00 0.00 5.24
2251 2544 0.934496 ACACATACACACACACACGC 59.066 50.000 0.00 0.00 0.00 5.34
2252 2545 3.738791 ACATACACATACACACACACACG 59.261 43.478 0.00 0.00 0.00 4.49
2253 2546 4.509970 ACACATACACATACACACACACAC 59.490 41.667 0.00 0.00 0.00 3.82
2254 2547 4.509600 CACACATACACATACACACACACA 59.490 41.667 0.00 0.00 0.00 3.72
2255 2548 4.509970 ACACACATACACATACACACACAC 59.490 41.667 0.00 0.00 0.00 3.82
2256 2549 4.509600 CACACACATACACATACACACACA 59.490 41.667 0.00 0.00 0.00 3.72
2257 2550 4.509970 ACACACACATACACATACACACAC 59.490 41.667 0.00 0.00 0.00 3.82
2258 2551 4.698575 ACACACACATACACATACACACA 58.301 39.130 0.00 0.00 0.00 3.72
2259 2552 6.961359 ATACACACACATACACATACACAC 57.039 37.500 0.00 0.00 0.00 3.82
2260 2553 8.524487 TCTAATACACACACATACACATACACA 58.476 33.333 0.00 0.00 0.00 3.72
2261 2554 8.920509 TCTAATACACACACATACACATACAC 57.079 34.615 0.00 0.00 0.00 2.90
2262 2555 9.930693 TTTCTAATACACACACATACACATACA 57.069 29.630 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.