>input_sequence_82862
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-------------------------------------------------------------------ATGTTGCTCCTGC
CCATCGCCTTCCTCGTGCTATCATCAGGTACTCATTTATTCATGTAATATGTTCA-TCGAAACCTCATCCGATAAATAAT
GATCATCATGTTGTGATCCTCTC--TTCCTCATGTTGGGATTTTGCAGATGTGATAATGGAGGCGTCGGCGGGCATTGGC
ATTGATCCCATCTCCTGTATGTCAAACATTATTCAGCCGTCGCCAAAGCCATGTGATAACCAAACTTGTCGTAAGGCATG
CGTCGAACGTATAGGGTACGGCACAGAAGGCAAGTGTGTTACCGAGGGGTGCGAGTGTACGTACTGCACAAATTGGCCTC
CACGACAATCAACAAATGAGCCCTGA------------------------------------------------------
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>chr6B_1_TraesCS6B01G418700
GTATTTTCAAGACGATCCTCATCATTGCAGTGTAGCATCCTACAGGCAATGCGTCTCAATTGCAGTACAGCGGCCAATCT
CGGAGTGCACGGCCGCCGGCGTCTCCCAATGCTCCGCCCCACGTGCGTCTCCGCCGCGGGGAGCTGGGATGGCCGATTCC
CGGCCGAAGCGCGCATCGCCTCCATCTCCCTCGCCCTC---------------------CCCCGTCTCCGGCCGGCCACC
TCTTCTGCTCTGCGGTGGCGCAGCCGCGCAGGCATCCTCCAAGAGGTCATGGATGGATGGAAAGGAGCTCGCCAAGGGGA
TGGATAAGAAAGAACTCGCGGCAGCGGCAGCGGCGACGGAGGGTCCCGGGCCGGCCGGCGGTCTGCGCGATTTGGAGACG
AGCCAGTGTTGGCTG-TTTTTTTTTCTCTTTCTCTTTTTTTGAGGTTTTTTTT--CTCTTTCTCTGACGGGAATGACGAG
CCAGCGGTGTGTTTGTTTCTGCCCAC--GTCCACCTATTCTAGTCCGCTATGATCCAGCCCACGAAACAGCCGGAGGCCC
AATAAAATAATCTCTTATTTTCTTCTCAAAAACTAATAATCTCTTATTAATTTCTCCACACGCATCCATTTTTTTTGAAA
AATGACAAAAATCTATAAAAAAAAGCATATATCTTTCCTTCGCTTCTCACCCCCCTCTACATTATTGATGTTTTTGTTAT
ATAAAATAATCATAATTATCCAAAGGAGACAACGTTTTCTTTTTTAATGACTCATCAGGCCATGACGTACCTCTACATTA
CTAGCGTGTACAATAAATTGTGTGCATTGATGGGAATGTATATCTGCACGCTACTACATGATTATCTATATAGGTCATTA
ATTTGATAAATAGTGCTTTAATGCGGCAAATCCAATATAAAAAGGCTTGTCCACTATGTTGGTTCTCCTTCAGAGCTCAC
AGATCGGGCAACTATCGGC-AAGTCTTTCCTTCAACTCAACAATTAGCTAAGATGAGGTGTATCCAAATGTTGCTCCTGC
CCATCGCCTTCCTCGTGCTATCATCAGGTACTCATTTATTCATGTAATATGTTCA-TCGAAACCTCATCCGATAAATAAT
GATCATCATGTTGTGATCCTCTC--TTCCTCATGTTGGGATTTTGCAGATGTGATAATGGAGGCGTCGGCGGGCATTGGC
ATTGATCCCATCTCCTGTATGTCAAACATTATTCAGCCGTCGCCAAAGCCATGTGATAACCAAACTTGTCGTAAGGCATG
CGTCGAACGTATAGGGTACGGCACAGAAGGCAAGTGTGTTACCGAGGGGTGCGAGTGTACGTACTGCACAAATTGGCCTC
CACGACAATCAACAAATGAGCCCTGATTTAGATAGGATGGGATGTCATGTTGAATTGAATAATGCAACAGAGATCATAAA
TGGTGTAATAGCAATGTTGTTCACTGATAAGTCATATGAAGAATGATGAATTTGGACTTGCTTATTGAATTATTTGAGGT
TATGAGGTGAGTTATGTGATGTTTACCTCTAC------AGAAATATTATACGTATTGGAAAGGGAAGAAATAGAAGCGGA
TACCCCTG----------------------------------------------AAAAAAGATAATTTGGTTTATGGAAT
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----------------------------------------------------GCATTCTGCGGCAAATGCA--TGCCCCA
TCGCACAAGGTAAAAAATCG-----------------------------------------------AAAAAGTTCGTTT
GCGGTAGCTGGGATTCAAACGCACGCAAGTAAAAAAGTAATGGTGTAACAGTAAGGTTGTTCACTGGAAATATAATCAAA
GAGATCTGGTGGCAGATATGCATCGCAAGTATTAAAAAGTAATGGGAATTTGTAACTTCCTTACGTGAGGATTTTAGCAT
TAGATCCGAACTACG---------------------------CACGCCGCCAGTTTCC--TTTTCGGCAATTTTCTTTTA
TTTCGGTAACTAAGTAGTCTGCGCATATAATTATATTTCCTTTTTCTTTTTAATTTCTCAATTTTCTCTTTCCCAACCGT
TTCCCTTTTTTTCGATCGGGCAGTTTCCTTTTTTTTTCTGCCATTTCCTTTTACTCCCTCCGTACCGAAATACTACTAAT
TAGTCTGCGCATATAATTATGTTTCCTTTTTCTATTCAATTTTTCAGTTTCCTTTTTCCCAGCCGTTTCCTTTTTTTCGA
CCAGGCAGTTTCCTTTTTTTCAGGCAATTTTCTTATACTCCCTCTGTACCGAAAGACTTGTAGTTGGGGCGACCATTTCT
TTTATTTCGACCACTAATTTCTCAGTTGCGCATGTGTGTGTGTGTGTGCGTGCATGCGTGCGTGCGTGTGTGTGTGTATG
TGTATGTGTGTGTATTAGAAAAAAATACTCTTCAAAAATACATTTGAAAAAAATGTTGAACAAGAATTTGAAAAATACTG
AATAAGTA
>chr6D_54
-----------------------------------------------------TCTCAATTGCAGTACAGCAGCCAATCT
CAGAGTGCACGGTCGCCGGCGTCTCCCAATGCTCCGTTCCACGTGCGTCTCCGCCGCGTGGAGCTAGGATGGTTAATCCC
TAGCCGAAGCGCGCATCGCCTCCATCTCCCTCGCCCTCTCCGGTCTCCGGCGAGTCCTCCCCCGTTTCCGGCCGGCCACC
TCTTCTGCTCCGCGGTG--------GCGCAGGCATCCTCCAAGAGGTCAGGGATGGGTAAGAAGGAGCTCGCCAAGGGGA
TGGATGAGAAAGAACTCGCGGCAGCGGCAGCGGCGACGGAGGGTCCCGG-CCGGCCGGCGGTCTGCGCGATTTGGGGACG
AGGCAGTGTTGGGTGTTTTTTTTTTCTCTTTCTCTTTTTTTGAGGTTTTTTTTTTCTCTTTCTCTGACGGGAATGACGAG
GCAGCGGTGTGTTTCTTTATGCCCACTGGTCCACCTATTCTGGTCCACTATGATCCAGCCCACGAAACAGCCGAAGGCCC
AAT-----------------------------------------------------------------------------
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>chr6D_776
TAGT----------------------------------------------------------------------------
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-----GTGTACAATAAATTGTGTGCATTGATGGGAACGTATATCTGCATG---CTACATGATTATCTATATAGGTCATTA
ATTTGATAAATAGTATTTTAATGTGGCAAATTCAATATAAAACGGCTTGTCCATTATGTTGGTTCTCCTTCAGAGCTCAC
AGATTAGGCAACTATCGGC-AAGTCTTTCCTTCAACTCAACAACTAGCTAAGATGAGGTGTACCCAAATGTTGCTCCTGC
CCATCGCCTTCCTCGTGCTATCATCAGGTACTCATTTATTCATGTAATATGTTTCTTCGAAACCTCGTCCAATAAATAAT
G---ATCATGTTGTGATCGTCTC--TTCCTCATGTTGGGATTTTGCAGATGTGATAATGGAGGCGTCGGCGGGCATTGGC
ATTGATCCCATCTCCTGTATGTCAAACATTATTCAGCCATCGCCAAAGCCATGTAATAACCAAACTTGTCGTAAGGCATG
CGTCGAACGTATAGGGTATGGCACAGAAGGCGAGTGTGTTACCAAGGGGTGCAAGTGTACGTACTGCACAAACTGGCCTC
CACGACAATCAACAAATGAGCCCTGATTTAGATAGGATGGGATGTCATGTTGGATTGAATAATGCAAAAGAGATCATAAA
TGGTGTAATAGCAAGGTTGTTCACTGATAAGTCATATGAAGAATCATGAATTTGGACTTGCTTCTTGAATTATTTGAGGT
TGTGAGGTGAGTTATGTGATGTTTACACGTACCTCTACAGAAATATTATATGTA--------------------------
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>chr6B_866
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-----------AGTACTTTAATACTGCAAATCCATTATAAAAGGGATTGTCCATTACGTTTGTTCTCCTTCAGAACTGAT
AAAGCACGCAACTGCTTGAAAACTCTTTCCTTCAACTCAACAATTAGCTAAGATGAGGACTACCCAAATGTTGCTCCTGG
CCATCGCCATCCTCGTGCTAGCATCAGGTACTCATTTGTTCATGTAATATGTTTCTTCGAAACCTCATCCATCGAATAAT
G---GTCATGTTGTGATCGTCCCTTTTCCTCATGTTGAGATTTTGTAGATGCGCTAATGGAGGCATCAGCGGACATTAGT
ATTGATCCCGTCACATGTACATCAAAAATCAT---GCCATCGCCAACGCCCTGTGAAAACCAAAGTTGCAACAAGACATG
TGTTGAAGGTCTAGGGTACCTCGCAGCTGGATGGTGTGTTACCCAGGGGTGCATGTGTATGTATTGCCCACT---GCCTC
CACGGCAGTTAGCAAATGGGCACTAATTATCTAGACTAA-GATGTCGTGTTCAATTGAATAGCGCAAAC--GATCATAAT
TGGTGTAGCAGCGAGGTTGTTCACTGATAAGTCATAAGAAGAATGATGAATTTGGTCTTGCTTCTTGAATTATCTGAGGT
TATGAAGTGGGCTATATGATGTTTACTTGTAC------------------------------------------------
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>chr6A_1151
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------------------------------------------------------------AGGCGTCGGCGGGCATTGGC
ATTGATCCCATCTCCTGTATGTCAAACATTATTCAGCCATCGCCAAAGCCATGTGATAAGCAAACTTGTCATAAGGCATG
CGTCGAACGTATAGGGTACGGCACAGAAGGCGAGTGTGTTACCGAGGGGTGCAAGTGTACGTACTGCACAAACTGGCCTC
CACGACAATCAACAAATGAACCCTGATTTAGATAGGATGGGATGTCATGTTGAATTGAATAATGCAACAGATATCATAAA
TGGTGTAACAGCAAGGTTGTTCACTGATAAGTCATATGAAGAATGATGAATTTGGACTTGCTTATTGAATTATTCAAGGT
TATGAGGTGAGTTATGTGATGTTTACACGTACCTCTACAAAAATATTATATATATTGGAAAGGGAAGAAATAGAAACGGA
TACCCATGTGCTTCTAGTCTAGTAGTACTATAAGAAGATAATTTGGTCCACTGCAAAAAAGATAGTTTGGTTTATGGAAT
ACAATGCTTAAACACTGGTTTGGCCATTTGGACGAATGACTAGACATGGTACCAGCTCGGTTGGAGAGTGCTCTGCAAGT
TCGTGAGATGTACCTTTTTTAACAGCTCTGCACACAGGAGCTCGTATGTGACGCATTCTGCGGCAAATGCATATGCCCCA
TAGCACAGGGTGCGCCCGACTGGGCCGGCCCATTGCGGTGCGCTGCGAATGCATTGGTAAAAAATCAAAAAAGTTCGTTC
GCGGTAGCTGGGATTCAAACGCACGCCTACCTGCTCAAGCCCGCTTGCTGCTACCACAACGACCG-------------AA
GAGATCTGGTGGTAGATATGCATCGCAAGTATTAAAAAGTAATGGGAATTTGTAACTTCCTTACGCGAGGATTTTAGCAT
TAGATCCGAACTACGTGATCGCCGTTGGATGCGCTCGCTACGCACGCCGCCAATTTCTTTTTTTCGGCAATTTTCTTTTA
TTTCGGTAACTAATTAGTCTGCGCATATTATTATATTTCCTTTTTCTATTTAATTTCTCGGTTTTCTTTTTCCCAACTGT
TTCC--TTTTTTCGACCAGGCAGTTTCCTTTTTTTCCGA-CCATTTTCTTTTACTCCCTCCGTACCGAAATACTA---AT
TAGCCTGCGCATATAAT-ATGTTTCCTTTTTCTATTCATTTTCTCAGTTTCCTTTTTCCCAACCGTTTCCTTTTTTTCGA
CCAGGTAGTTTTCTTTTTTTT-GGCAATTTCCTTAT--------------------------------------------
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>SNPs
SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S--------
-S----------S-----------------------SS--------------------S------S------SSS--S--
SS---------------------------------------------------------------S--------------
----------S------SSSSSSSS------------------------S------S-SSS-------------------
-----S-------------------------------------------S-------------------------S----
--S---------S-------------------------------------------------------------------
S-------------S---S----------------------S----S--------------------------S------
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS-------------------------------S-----------S-SSS---------------------------
--------------S---------------------------S----------S--------------------------
-----S--------------------------------------------------------S-----------------
-----------------------------------------------------SS---------------S---------
-SSS--------------S-------------------------------------------------------------
--------------------------------------S-----------------------------------------
-------------------------------S--------------------S-------------------S-------
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--------------S-----------------------------------------------------------------
--------------------------S-S---------------------S------------------------S----
-----S----------------------------------------------------------S---------------
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-S-----S---SSSSSSSSS-----------------------------------------------------------S
--------------------------SSSSSSSSSSSSSSSS-SS-SSSSS--SSSSSSSSSS-SSSSSSSSSSSSSS--
------------S----------------------------------------------------S--------------
----------------------------------------------------S----S----------------------
-------------S--------------S------------------S-----------SS------S---------S--
----SS---------S-S-----------------SSSSS------S----------------------------SSS--
---S-------------S--------------------S---S------------------S------------------
-----S-----S--------SS--------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS
>forward_693
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---------------------------------TTTCCTTCGCTTCTCACCCC---------------------------
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>reverse_2541
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------------------------------------------------------------CGTGCGTGTGTGTGTGTATG
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