Multiple sequence alignment - TraesCS6B01G392800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G392800 chr6B 100.000 3100 0 0 1 3100 667893864 667896963 0.000000e+00 5725.0
1 TraesCS6B01G392800 chr6B 90.455 660 42 8 1 642 213490918 213490262 0.000000e+00 850.0
2 TraesCS6B01G392800 chr6D 91.841 907 35 12 2215 3100 441895734 441896622 0.000000e+00 1229.0
3 TraesCS6B01G392800 chr6D 85.182 1073 108 33 922 1969 441894373 441895419 0.000000e+00 1053.0
4 TraesCS6B01G392800 chr6A 91.389 871 30 24 2247 3100 591263909 591264751 0.000000e+00 1151.0
5 TraesCS6B01G392800 chr6A 85.144 801 80 21 922 1706 591262492 591263269 0.000000e+00 784.0
6 TraesCS6B01G392800 chr6A 90.661 257 22 1 1727 1981 591263549 591263805 1.060000e-89 340.0
7 TraesCS6B01G392800 chr4B 91.284 654 36 8 1 636 513076699 513077349 0.000000e+00 872.0
8 TraesCS6B01G392800 chr2D 90.396 656 43 10 1 638 572678793 572679446 0.000000e+00 845.0
9 TraesCS6B01G392800 chr2D 89.466 655 47 9 1 637 47515945 47516595 0.000000e+00 808.0
10 TraesCS6B01G392800 chr2D 89.144 654 51 8 1 636 551887858 551888509 0.000000e+00 797.0
11 TraesCS6B01G392800 chr5D 90.373 644 49 10 1 636 123465991 123465353 0.000000e+00 833.0
12 TraesCS6B01G392800 chr5D 79.381 388 49 19 1540 1906 369065256 369064879 8.590000e-61 244.0
13 TraesCS6B01G392800 chr4A 90.091 656 44 8 1 638 646576408 646577060 0.000000e+00 832.0
14 TraesCS6B01G392800 chr7B 89.771 655 47 6 1 637 333367068 333366416 0.000000e+00 821.0
15 TraesCS6B01G392800 chr3B 89.602 654 48 9 1 636 232720274 232720925 0.000000e+00 813.0
16 TraesCS6B01G392800 chr3B 89.144 654 48 8 1 636 421116719 421117367 0.000000e+00 793.0
17 TraesCS6B01G392800 chr1B 88.991 654 52 7 1 636 616086231 616085580 0.000000e+00 791.0
18 TraesCS6B01G392800 chr3D 89.557 632 46 11 1 614 96698806 96699435 0.000000e+00 784.0
19 TraesCS6B01G392800 chr2A 92.977 299 21 0 1 299 21929851 21929553 1.320000e-118 436.0
20 TraesCS6B01G392800 chr2A 100.000 28 0 0 2187 2214 373201964 373201937 6.000000e-03 52.8
21 TraesCS6B01G392800 chr5A 81.765 340 34 16 1540 1861 471466717 471466388 3.070000e-65 259.0
22 TraesCS6B01G392800 chr5B 79.293 396 50 20 1540 1913 437562824 437562439 6.640000e-62 248.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G392800 chr6B 667893864 667896963 3099 False 5725.000000 5725 100.000000 1 3100 1 chr6B.!!$F1 3099
1 TraesCS6B01G392800 chr6B 213490262 213490918 656 True 850.000000 850 90.455000 1 642 1 chr6B.!!$R1 641
2 TraesCS6B01G392800 chr6D 441894373 441896622 2249 False 1141.000000 1229 88.511500 922 3100 2 chr6D.!!$F1 2178
3 TraesCS6B01G392800 chr6A 591262492 591264751 2259 False 758.333333 1151 89.064667 922 3100 3 chr6A.!!$F1 2178
4 TraesCS6B01G392800 chr4B 513076699 513077349 650 False 872.000000 872 91.284000 1 636 1 chr4B.!!$F1 635
5 TraesCS6B01G392800 chr2D 572678793 572679446 653 False 845.000000 845 90.396000 1 638 1 chr2D.!!$F3 637
6 TraesCS6B01G392800 chr2D 47515945 47516595 650 False 808.000000 808 89.466000 1 637 1 chr2D.!!$F1 636
7 TraesCS6B01G392800 chr2D 551887858 551888509 651 False 797.000000 797 89.144000 1 636 1 chr2D.!!$F2 635
8 TraesCS6B01G392800 chr5D 123465353 123465991 638 True 833.000000 833 90.373000 1 636 1 chr5D.!!$R1 635
9 TraesCS6B01G392800 chr4A 646576408 646577060 652 False 832.000000 832 90.091000 1 638 1 chr4A.!!$F1 637
10 TraesCS6B01G392800 chr7B 333366416 333367068 652 True 821.000000 821 89.771000 1 637 1 chr7B.!!$R1 636
11 TraesCS6B01G392800 chr3B 232720274 232720925 651 False 813.000000 813 89.602000 1 636 1 chr3B.!!$F1 635
12 TraesCS6B01G392800 chr3B 421116719 421117367 648 False 793.000000 793 89.144000 1 636 1 chr3B.!!$F2 635
13 TraesCS6B01G392800 chr1B 616085580 616086231 651 True 791.000000 791 88.991000 1 636 1 chr1B.!!$R1 635
14 TraesCS6B01G392800 chr3D 96698806 96699435 629 False 784.000000 784 89.557000 1 614 1 chr3D.!!$F1 613

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
863 885 0.038159 CTAGGCTACACGCATAGGCC 60.038 60.0 14.31 0.0 46.39 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2197 2631 0.044855 AACTACTCCCTCTGCCCCAT 59.955 55.0 0.0 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
159 162 0.698818 AAAGAGGCTCGGGTTCCATT 59.301 50.000 9.22 0.00 0.00 3.16
251 254 1.880340 CCGACGAGAAGAGCATGCC 60.880 63.158 15.66 6.03 0.00 4.40
299 302 0.251354 GAGCTCCATGCCTCAACTCA 59.749 55.000 0.87 0.00 44.23 3.41
300 303 0.917533 AGCTCCATGCCTCAACTCAT 59.082 50.000 0.00 0.00 44.23 2.90
301 304 2.103771 GAGCTCCATGCCTCAACTCATA 59.896 50.000 0.87 0.00 44.23 2.15
302 305 2.507058 AGCTCCATGCCTCAACTCATAA 59.493 45.455 0.00 0.00 44.23 1.90
331 353 2.963854 CGTCGCCTATGCAGCAGG 60.964 66.667 11.93 11.93 37.32 4.85
391 413 0.621571 CTGGAGGAGGGGTGAATGGA 60.622 60.000 0.00 0.00 0.00 3.41
412 434 0.608035 GGATTCCGTTGTGGCCAGAA 60.608 55.000 12.06 12.06 37.80 3.02
497 519 1.663388 CACGTGGTCAACAGCGCTA 60.663 57.895 10.99 0.00 0.00 4.26
527 549 1.069378 GTACGTGCTACAGTGACCGC 61.069 60.000 0.00 0.00 0.00 5.68
594 616 3.655276 AAGTTCAGTGACCGTATCGTT 57.345 42.857 0.00 0.00 0.00 3.85
595 617 3.655276 AGTTCAGTGACCGTATCGTTT 57.345 42.857 0.00 0.00 0.00 3.60
621 643 4.885325 TCAGTCGCAACTATAGTGACCATA 59.115 41.667 6.06 0.00 45.19 2.74
658 680 9.886132 TCTCTTTAGGTTGTAAATATGGACTTC 57.114 33.333 0.00 0.00 0.00 3.01
659 681 9.110502 CTCTTTAGGTTGTAAATATGGACTTCC 57.889 37.037 0.00 0.00 0.00 3.46
660 682 8.050930 TCTTTAGGTTGTAAATATGGACTTCCC 58.949 37.037 0.00 0.00 34.29 3.97
661 683 7.519347 TTAGGTTGTAAATATGGACTTCCCT 57.481 36.000 0.00 0.00 35.38 4.20
662 684 6.002653 AGGTTGTAAATATGGACTTCCCTC 57.997 41.667 0.00 0.00 35.38 4.30
663 685 5.731678 AGGTTGTAAATATGGACTTCCCTCT 59.268 40.000 0.00 0.00 35.38 3.69
664 686 5.823045 GGTTGTAAATATGGACTTCCCTCTG 59.177 44.000 0.00 0.00 35.38 3.35
665 687 6.415573 GTTGTAAATATGGACTTCCCTCTGT 58.584 40.000 0.00 0.00 35.38 3.41
666 688 5.989477 TGTAAATATGGACTTCCCTCTGTG 58.011 41.667 0.00 0.00 35.38 3.66
667 689 5.487488 TGTAAATATGGACTTCCCTCTGTGT 59.513 40.000 0.00 0.00 35.38 3.72
668 690 4.494091 AATATGGACTTCCCTCTGTGTG 57.506 45.455 0.00 0.00 35.38 3.82
669 691 2.030027 ATGGACTTCCCTCTGTGTGA 57.970 50.000 0.00 0.00 35.38 3.58
670 692 1.342074 TGGACTTCCCTCTGTGTGAG 58.658 55.000 0.00 0.00 42.30 3.51
680 702 3.296322 CTCTGTGTGAGGAGAAGTCAC 57.704 52.381 0.00 0.00 43.97 3.67
681 703 1.609072 TCTGTGTGAGGAGAAGTCACG 59.391 52.381 0.00 0.00 46.21 4.35
682 704 0.673985 TGTGTGAGGAGAAGTCACGG 59.326 55.000 0.00 0.00 46.21 4.94
683 705 0.667792 GTGTGAGGAGAAGTCACGGC 60.668 60.000 0.00 0.00 46.21 5.68
684 706 1.444553 GTGAGGAGAAGTCACGGCG 60.445 63.158 4.80 4.80 35.31 6.46
685 707 2.507324 GAGGAGAAGTCACGGCGC 60.507 66.667 6.90 0.00 0.00 6.53
686 708 3.991536 GAGGAGAAGTCACGGCGCC 62.992 68.421 19.07 19.07 0.00 6.53
701 723 2.747855 GCCCCTGCGAAGTCAAGG 60.748 66.667 0.00 0.00 0.00 3.61
702 724 3.068881 CCCCTGCGAAGTCAAGGA 58.931 61.111 0.00 0.00 0.00 3.36
703 725 1.374947 CCCCTGCGAAGTCAAGGAA 59.625 57.895 0.00 0.00 0.00 3.36
704 726 0.250727 CCCCTGCGAAGTCAAGGAAA 60.251 55.000 0.00 0.00 0.00 3.13
705 727 0.875059 CCCTGCGAAGTCAAGGAAAC 59.125 55.000 0.00 0.00 0.00 2.78
706 728 0.512952 CCTGCGAAGTCAAGGAAACG 59.487 55.000 0.00 0.00 0.00 3.60
707 729 0.110644 CTGCGAAGTCAAGGAAACGC 60.111 55.000 0.00 0.00 44.95 4.84
708 730 1.938861 GCGAAGTCAAGGAAACGCA 59.061 52.632 0.00 0.00 44.29 5.24
709 731 0.306533 GCGAAGTCAAGGAAACGCAA 59.693 50.000 0.00 0.00 44.29 4.85
710 732 1.660333 GCGAAGTCAAGGAAACGCAAG 60.660 52.381 0.00 0.00 44.29 4.01
711 733 1.660333 CGAAGTCAAGGAAACGCAAGC 60.660 52.381 0.00 0.00 45.62 4.01
712 734 0.668535 AAGTCAAGGAAACGCAAGCC 59.331 50.000 0.00 0.00 45.62 4.35
713 735 1.082104 GTCAAGGAAACGCAAGCCG 60.082 57.895 0.00 0.00 45.62 5.52
714 736 2.429069 CAAGGAAACGCAAGCCGC 60.429 61.111 0.00 0.00 45.62 6.53
715 737 3.670377 AAGGAAACGCAAGCCGCC 61.670 61.111 0.00 0.00 45.62 6.13
718 740 3.416382 GAAACGCAAGCCGCCGTA 61.416 61.111 0.00 0.00 45.62 4.02
719 741 3.640436 GAAACGCAAGCCGCCGTAC 62.640 63.158 0.00 0.00 45.62 3.67
724 746 2.358247 CAAGCCGCCGTACCACTT 60.358 61.111 0.00 0.00 0.00 3.16
725 747 2.047560 AAGCCGCCGTACCACTTC 60.048 61.111 0.00 0.00 0.00 3.01
726 748 3.600898 AAGCCGCCGTACCACTTCC 62.601 63.158 0.00 0.00 0.00 3.46
728 750 4.060038 CCGCCGTACCACTTCCGT 62.060 66.667 0.00 0.00 0.00 4.69
729 751 2.807895 CGCCGTACCACTTCCGTG 60.808 66.667 0.00 0.00 40.89 4.94
730 752 3.116531 GCCGTACCACTTCCGTGC 61.117 66.667 0.00 0.00 39.86 5.34
731 753 2.340809 CCGTACCACTTCCGTGCA 59.659 61.111 0.00 0.00 39.86 4.57
732 754 1.301087 CCGTACCACTTCCGTGCAA 60.301 57.895 0.00 0.00 39.86 4.08
733 755 0.881159 CCGTACCACTTCCGTGCAAA 60.881 55.000 0.00 0.00 39.86 3.68
734 756 0.938713 CGTACCACTTCCGTGCAAAA 59.061 50.000 0.00 0.00 39.86 2.44
735 757 1.333435 CGTACCACTTCCGTGCAAAAC 60.333 52.381 0.00 0.00 39.86 2.43
744 766 3.535691 CGTGCAAAACGCTACCAAA 57.464 47.368 0.00 0.00 46.99 3.28
745 767 1.117234 CGTGCAAAACGCTACCAAAC 58.883 50.000 0.00 0.00 46.99 2.93
746 768 1.268335 CGTGCAAAACGCTACCAAACT 60.268 47.619 0.00 0.00 46.99 2.66
747 769 2.793237 CGTGCAAAACGCTACCAAACTT 60.793 45.455 0.00 0.00 46.99 2.66
748 770 2.533942 GTGCAAAACGCTACCAAACTTG 59.466 45.455 0.00 0.00 43.06 3.16
749 771 2.124122 GCAAAACGCTACCAAACTTGG 58.876 47.619 6.95 6.95 45.63 3.61
750 772 3.115147 GCAAAACGCTACCAAACTTGGG 61.115 50.000 12.99 0.00 44.94 4.12
751 773 5.345180 GCAAAACGCTACCAAACTTGGGA 62.345 47.826 12.99 3.20 44.94 4.37
759 781 0.890683 CCAAACTTGGGAGTCCATGC 59.109 55.000 12.30 0.00 44.70 4.06
760 782 1.619654 CAAACTTGGGAGTCCATGCA 58.380 50.000 12.30 0.00 43.63 3.96
761 783 1.962807 CAAACTTGGGAGTCCATGCAA 59.037 47.619 12.30 5.35 43.63 4.08
762 784 1.915141 AACTTGGGAGTCCATGCAAG 58.085 50.000 19.46 19.46 43.63 4.01
763 785 1.067295 ACTTGGGAGTCCATGCAAGA 58.933 50.000 24.98 0.00 43.63 3.02
764 786 1.425066 ACTTGGGAGTCCATGCAAGAA 59.575 47.619 24.98 2.60 43.63 2.52
765 787 2.158475 ACTTGGGAGTCCATGCAAGAAA 60.158 45.455 24.98 2.89 43.63 2.52
766 788 2.205022 TGGGAGTCCATGCAAGAAAG 57.795 50.000 12.30 0.00 38.32 2.62
767 789 1.272092 TGGGAGTCCATGCAAGAAAGG 60.272 52.381 12.30 0.00 38.32 3.11
768 790 0.813821 GGAGTCCATGCAAGAAAGGC 59.186 55.000 3.60 0.00 0.00 4.35
769 791 0.449388 GAGTCCATGCAAGAAAGGCG 59.551 55.000 0.00 0.00 0.00 5.52
770 792 1.153958 GTCCATGCAAGAAAGGCGC 60.154 57.895 0.00 0.00 0.00 6.53
771 793 1.603171 TCCATGCAAGAAAGGCGCA 60.603 52.632 10.83 0.00 40.50 6.09
772 794 1.177895 TCCATGCAAGAAAGGCGCAA 61.178 50.000 10.83 0.00 39.48 4.85
773 795 0.734942 CCATGCAAGAAAGGCGCAAG 60.735 55.000 10.83 0.00 39.48 4.01
774 796 0.734942 CATGCAAGAAAGGCGCAAGG 60.735 55.000 10.83 0.00 39.48 3.61
775 797 0.895100 ATGCAAGAAAGGCGCAAGGA 60.895 50.000 10.83 0.00 39.48 3.36
776 798 1.106351 TGCAAGAAAGGCGCAAGGAA 61.106 50.000 10.83 0.00 38.28 3.36
777 799 0.387750 GCAAGAAAGGCGCAAGGAAG 60.388 55.000 10.83 0.00 38.28 3.46
778 800 0.242017 CAAGAAAGGCGCAAGGAAGG 59.758 55.000 10.83 0.00 38.28 3.46
779 801 0.110486 AAGAAAGGCGCAAGGAAGGA 59.890 50.000 10.83 0.00 38.28 3.36
780 802 0.110486 AGAAAGGCGCAAGGAAGGAA 59.890 50.000 10.83 0.00 38.28 3.36
781 803 1.177401 GAAAGGCGCAAGGAAGGAAT 58.823 50.000 10.83 0.00 38.28 3.01
782 804 0.890683 AAAGGCGCAAGGAAGGAATG 59.109 50.000 10.83 0.00 38.28 2.67
783 805 1.598701 AAGGCGCAAGGAAGGAATGC 61.599 55.000 10.83 0.00 36.74 3.56
784 806 2.342650 GGCGCAAGGAAGGAATGCA 61.343 57.895 10.83 0.00 40.04 3.96
785 807 1.586028 GCGCAAGGAAGGAATGCAA 59.414 52.632 0.30 0.00 40.04 4.08
786 808 0.733909 GCGCAAGGAAGGAATGCAAC 60.734 55.000 0.30 0.00 40.04 4.17
787 809 0.109132 CGCAAGGAAGGAATGCAACC 60.109 55.000 0.00 0.00 40.04 3.77
788 810 0.109132 GCAAGGAAGGAATGCAACCG 60.109 55.000 0.00 0.00 39.81 4.44
789 811 1.533625 CAAGGAAGGAATGCAACCGA 58.466 50.000 0.00 0.00 0.00 4.69
790 812 1.885887 CAAGGAAGGAATGCAACCGAA 59.114 47.619 0.00 0.00 0.00 4.30
791 813 1.826385 AGGAAGGAATGCAACCGAAG 58.174 50.000 0.00 0.00 0.00 3.79
792 814 1.073923 AGGAAGGAATGCAACCGAAGT 59.926 47.619 0.00 0.00 0.00 3.01
793 815 1.468914 GGAAGGAATGCAACCGAAGTC 59.531 52.381 0.00 0.00 0.00 3.01
794 816 1.128692 GAAGGAATGCAACCGAAGTCG 59.871 52.381 0.00 0.00 39.44 4.18
836 858 4.072088 CGGCCGTGAGCGAAACAC 62.072 66.667 19.50 0.00 45.17 3.32
837 859 3.723348 GGCCGTGAGCGAAACACC 61.723 66.667 0.00 0.00 45.17 4.16
838 860 4.072088 GCCGTGAGCGAAACACCG 62.072 66.667 0.00 0.00 41.33 4.94
839 861 3.411351 CCGTGAGCGAAACACCGG 61.411 66.667 0.00 0.00 41.33 5.28
840 862 4.072088 CGTGAGCGAAACACCGGC 62.072 66.667 0.00 0.00 41.33 6.13
841 863 3.723348 GTGAGCGAAACACCGGCC 61.723 66.667 0.00 0.00 32.84 6.13
846 868 2.259204 CGAAACACCGGCCGACTA 59.741 61.111 30.73 0.00 0.00 2.59
847 869 1.804326 CGAAACACCGGCCGACTAG 60.804 63.158 30.73 12.89 0.00 2.57
848 870 1.447314 GAAACACCGGCCGACTAGG 60.447 63.158 30.73 12.43 44.97 3.02
857 879 3.193757 CCGACTAGGCTACACGCA 58.806 61.111 0.00 0.00 41.67 5.24
858 880 1.734137 CCGACTAGGCTACACGCAT 59.266 57.895 0.00 0.00 41.67 4.73
859 881 0.949397 CCGACTAGGCTACACGCATA 59.051 55.000 0.00 0.00 41.67 3.14
862 884 3.498676 CTAGGCTACACGCATAGGC 57.501 57.895 11.02 11.02 46.39 3.93
863 885 0.038159 CTAGGCTACACGCATAGGCC 60.038 60.000 14.31 0.00 46.39 5.19
864 886 1.802337 TAGGCTACACGCATAGGCCG 61.802 60.000 14.31 0.00 46.36 6.13
865 887 2.106332 GCTACACGCATAGGCCGT 59.894 61.111 0.00 0.00 38.92 5.68
866 888 1.949631 GCTACACGCATAGGCCGTC 60.950 63.158 0.00 0.00 38.92 4.79
867 889 1.435925 CTACACGCATAGGCCGTCA 59.564 57.895 0.00 0.00 36.38 4.35
868 890 0.870307 CTACACGCATAGGCCGTCAC 60.870 60.000 0.00 0.00 36.38 3.67
869 891 2.287457 TACACGCATAGGCCGTCACC 62.287 60.000 0.00 0.00 36.38 4.02
870 892 3.075005 ACGCATAGGCCGTCACCT 61.075 61.111 0.00 0.00 44.31 4.00
871 893 1.755395 ACGCATAGGCCGTCACCTA 60.755 57.895 0.00 0.00 46.25 3.08
872 894 1.007271 CGCATAGGCCGTCACCTAG 60.007 63.158 0.00 0.00 45.41 3.02
873 895 1.452953 CGCATAGGCCGTCACCTAGA 61.453 60.000 0.00 0.00 45.41 2.43
874 896 0.315568 GCATAGGCCGTCACCTAGAG 59.684 60.000 0.00 0.00 45.41 2.43
875 897 1.982660 CATAGGCCGTCACCTAGAGA 58.017 55.000 0.00 0.00 45.41 3.10
876 898 2.307768 CATAGGCCGTCACCTAGAGAA 58.692 52.381 0.00 0.00 45.41 2.87
877 899 2.054232 TAGGCCGTCACCTAGAGAAG 57.946 55.000 0.00 0.00 41.50 2.85
878 900 1.142097 GGCCGTCACCTAGAGAAGC 59.858 63.158 0.00 0.00 0.00 3.86
879 901 1.605058 GGCCGTCACCTAGAGAAGCA 61.605 60.000 0.00 0.00 0.00 3.91
880 902 0.246635 GCCGTCACCTAGAGAAGCAA 59.753 55.000 0.00 0.00 0.00 3.91
881 903 1.997669 CCGTCACCTAGAGAAGCAAC 58.002 55.000 0.00 0.00 0.00 4.17
882 904 1.618861 CGTCACCTAGAGAAGCAACG 58.381 55.000 0.00 0.00 0.00 4.10
883 905 1.732732 CGTCACCTAGAGAAGCAACGG 60.733 57.143 0.00 0.00 0.00 4.44
884 906 0.895530 TCACCTAGAGAAGCAACGGG 59.104 55.000 0.00 0.00 0.00 5.28
885 907 0.741221 CACCTAGAGAAGCAACGGGC 60.741 60.000 0.00 0.00 45.30 6.13
894 916 3.553039 GCAACGGGCAATGCTTTG 58.447 55.556 4.82 7.93 43.97 2.77
904 926 2.549633 CAATGCTTTGCCTTACTCCG 57.450 50.000 0.00 0.00 0.00 4.63
905 927 1.812571 CAATGCTTTGCCTTACTCCGT 59.187 47.619 0.00 0.00 0.00 4.69
906 928 2.200373 ATGCTTTGCCTTACTCCGTT 57.800 45.000 0.00 0.00 0.00 4.44
907 929 1.234821 TGCTTTGCCTTACTCCGTTG 58.765 50.000 0.00 0.00 0.00 4.10
908 930 0.521735 GCTTTGCCTTACTCCGTTGG 59.478 55.000 0.00 0.00 0.00 3.77
909 931 1.892209 CTTTGCCTTACTCCGTTGGT 58.108 50.000 0.00 0.00 0.00 3.67
910 932 1.535462 CTTTGCCTTACTCCGTTGGTG 59.465 52.381 0.00 0.00 0.00 4.17
911 933 0.759959 TTGCCTTACTCCGTTGGTGA 59.240 50.000 0.00 0.00 0.00 4.02
912 934 0.759959 TGCCTTACTCCGTTGGTGAA 59.240 50.000 0.00 0.00 0.00 3.18
913 935 1.270625 TGCCTTACTCCGTTGGTGAAG 60.271 52.381 0.00 0.00 0.00 3.02
914 936 1.439679 CCTTACTCCGTTGGTGAAGC 58.560 55.000 0.00 0.00 0.00 3.86
915 937 1.270625 CCTTACTCCGTTGGTGAAGCA 60.271 52.381 0.00 0.00 0.00 3.91
916 938 2.489971 CTTACTCCGTTGGTGAAGCAA 58.510 47.619 0.00 0.00 0.00 3.91
917 939 1.873698 TACTCCGTTGGTGAAGCAAC 58.126 50.000 13.94 13.94 0.00 4.17
920 942 2.712539 CGTTGGTGAAGCAACGCA 59.287 55.556 27.95 0.00 45.56 5.24
924 946 1.996191 GTTGGTGAAGCAACGCAAAAA 59.004 42.857 9.38 0.00 0.00 1.94
952 974 3.813724 GACTAGCAACGAAACCTTCCTTT 59.186 43.478 0.00 0.00 0.00 3.11
953 975 3.564225 ACTAGCAACGAAACCTTCCTTTG 59.436 43.478 0.00 0.00 0.00 2.77
954 976 1.067060 AGCAACGAAACCTTCCTTTGC 59.933 47.619 10.36 10.36 41.78 3.68
957 979 3.115554 CAACGAAACCTTCCTTTGCTTG 58.884 45.455 0.00 0.00 0.00 4.01
958 980 1.681264 ACGAAACCTTCCTTTGCTTGG 59.319 47.619 0.00 0.00 0.00 3.61
959 981 1.681264 CGAAACCTTCCTTTGCTTGGT 59.319 47.619 0.00 0.00 0.00 3.67
989 1011 3.314331 CTGGCTCACTCCACCCGT 61.314 66.667 0.00 0.00 31.74 5.28
990 1012 2.847234 TGGCTCACTCCACCCGTT 60.847 61.111 0.00 0.00 0.00 4.44
991 1013 2.397413 CTGGCTCACTCCACCCGTTT 62.397 60.000 0.00 0.00 31.74 3.60
992 1014 1.966451 GGCTCACTCCACCCGTTTG 60.966 63.158 0.00 0.00 0.00 2.93
993 1015 2.617274 GCTCACTCCACCCGTTTGC 61.617 63.158 0.00 0.00 0.00 3.68
994 1016 1.071471 CTCACTCCACCCGTTTGCT 59.929 57.895 0.00 0.00 0.00 3.91
1011 1033 4.320608 TTGCTTGCCACCTTAAAGAAAG 57.679 40.909 0.00 0.00 34.73 2.62
1015 1037 4.800582 GCTTGCCACCTTAAAGAAAGCAAT 60.801 41.667 0.00 0.00 38.02 3.56
1016 1038 4.255833 TGCCACCTTAAAGAAAGCAATG 57.744 40.909 0.00 0.00 33.49 2.82
1017 1039 2.995939 GCCACCTTAAAGAAAGCAATGC 59.004 45.455 0.00 0.00 33.49 3.56
1019 1041 4.240096 CCACCTTAAAGAAAGCAATGCAG 58.760 43.478 8.35 0.00 33.49 4.41
1020 1042 4.022068 CCACCTTAAAGAAAGCAATGCAGA 60.022 41.667 8.35 0.00 33.49 4.26
1021 1043 5.337009 CCACCTTAAAGAAAGCAATGCAGAT 60.337 40.000 8.35 0.00 33.49 2.90
1022 1044 5.575606 CACCTTAAAGAAAGCAATGCAGATG 59.424 40.000 8.35 0.00 33.49 2.90
1026 1048 7.201848 CCTTAAAGAAAGCAATGCAGATGGATA 60.202 37.037 8.35 0.00 33.49 2.59
1028 1050 5.769484 AGAAAGCAATGCAGATGGATAAG 57.231 39.130 8.35 0.00 0.00 1.73
1030 1052 2.940158 AGCAATGCAGATGGATAAGCA 58.060 42.857 8.35 0.00 41.73 3.91
1031 1053 2.885266 AGCAATGCAGATGGATAAGCAG 59.115 45.455 8.35 0.00 40.71 4.24
1032 1054 2.882761 GCAATGCAGATGGATAAGCAGA 59.117 45.455 0.00 0.00 40.71 4.26
1033 1055 3.506455 GCAATGCAGATGGATAAGCAGAT 59.494 43.478 0.00 0.00 40.71 2.90
1036 1058 3.736720 TGCAGATGGATAAGCAGATGAC 58.263 45.455 0.00 0.00 32.48 3.06
1038 1060 3.324117 CAGATGGATAAGCAGATGACCG 58.676 50.000 0.00 0.00 0.00 4.79
1039 1061 2.301296 AGATGGATAAGCAGATGACCGG 59.699 50.000 0.00 0.00 0.00 5.28
1040 1062 0.106708 TGGATAAGCAGATGACCGGC 59.893 55.000 0.00 0.00 36.16 6.13
1041 1063 0.603975 GGATAAGCAGATGACCGGCC 60.604 60.000 0.00 0.00 36.60 6.13
1062 1084 2.189257 CCGGCGTGAATCCATCCA 59.811 61.111 6.01 0.00 0.00 3.41
1077 1099 3.202151 TCCATCCATCTAAAACCCCTGAC 59.798 47.826 0.00 0.00 0.00 3.51
1084 1106 0.037160 TAAAACCCCTGACCCGAAGC 59.963 55.000 0.00 0.00 0.00 3.86
1085 1107 1.716028 AAAACCCCTGACCCGAAGCT 61.716 55.000 0.00 0.00 0.00 3.74
1087 1109 1.265454 AACCCCTGACCCGAAGCTAG 61.265 60.000 0.00 0.00 0.00 3.42
1088 1110 2.501610 CCCTGACCCGAAGCTAGC 59.498 66.667 6.62 6.62 0.00 3.42
1090 1112 1.142748 CCTGACCCGAAGCTAGCAG 59.857 63.158 18.83 7.69 0.00 4.24
1093 1115 0.612174 TGACCCGAAGCTAGCAGAGT 60.612 55.000 18.83 6.55 0.00 3.24
1094 1116 0.179124 GACCCGAAGCTAGCAGAGTG 60.179 60.000 18.83 4.76 0.00 3.51
1095 1117 1.142748 CCCGAAGCTAGCAGAGTGG 59.857 63.158 18.83 10.68 0.00 4.00
1097 1119 1.520342 CGAAGCTAGCAGAGTGGCC 60.520 63.158 18.83 0.00 0.00 5.36
1098 1120 1.520342 GAAGCTAGCAGAGTGGCCG 60.520 63.158 18.83 0.00 0.00 6.13
1099 1121 2.914777 GAAGCTAGCAGAGTGGCCGG 62.915 65.000 18.83 0.00 0.00 6.13
1100 1122 3.461773 GCTAGCAGAGTGGCCGGA 61.462 66.667 10.63 0.00 0.00 5.14
1274 1299 1.901650 GAACGCAGCTCCAGAAACCG 61.902 60.000 0.00 0.00 0.00 4.44
1361 1389 1.445095 GATGGTCTCCTGCGCTCAT 59.555 57.895 9.73 1.04 0.00 2.90
1362 1390 0.879400 GATGGTCTCCTGCGCTCATG 60.879 60.000 9.73 0.00 0.00 3.07
1380 1408 1.455217 GCTCCTCGGCTGGGTACTA 60.455 63.158 0.00 0.00 0.00 1.82
1394 1428 2.344981 TACTACCAGAAGCGCCGCA 61.345 57.895 13.36 0.00 0.00 5.69
1412 1446 4.329545 GGGGTCGAGCCAAGTGCA 62.330 66.667 32.94 0.00 44.83 4.57
1414 1448 2.280797 GGTCGAGCCAAGTGCACA 60.281 61.111 21.04 0.00 44.83 4.57
1430 1464 3.114616 CAGCCGTCCACGCTCAAG 61.115 66.667 0.00 0.00 38.18 3.02
1431 1465 3.303135 AGCCGTCCACGCTCAAGA 61.303 61.111 0.00 0.00 38.18 3.02
1432 1466 3.112709 GCCGTCCACGCTCAAGAC 61.113 66.667 0.00 0.00 38.18 3.01
1535 1569 3.430565 CTCGCCGCTCATAGTGCCA 62.431 63.158 0.00 0.00 0.00 4.92
1714 1748 3.536956 CCGCCAGGTATGAAGACTAAA 57.463 47.619 0.00 0.00 0.00 1.85
1715 1749 3.195661 CCGCCAGGTATGAAGACTAAAC 58.804 50.000 0.00 0.00 0.00 2.01
1716 1750 3.118738 CCGCCAGGTATGAAGACTAAACT 60.119 47.826 0.00 0.00 0.00 2.66
1717 1751 4.504858 CGCCAGGTATGAAGACTAAACTT 58.495 43.478 0.00 0.00 0.00 2.66
1720 1754 4.636206 CCAGGTATGAAGACTAAACTTGCC 59.364 45.833 0.00 0.00 0.00 4.52
1724 1758 7.606456 CAGGTATGAAGACTAAACTTGCCTTTA 59.394 37.037 0.00 0.00 0.00 1.85
1732 2025 9.961265 AAGACTAAACTTGCCTTTATTTACAAC 57.039 29.630 0.00 0.00 0.00 3.32
1774 2069 7.501225 TCATACGGAGTTCAGATTGATGTACTA 59.499 37.037 0.00 0.00 37.78 1.82
1810 2105 1.958288 TCTCCAGGGGAAGAAGAAGG 58.042 55.000 0.00 0.00 0.00 3.46
1856 2157 0.191064 ACAACTCTCAGGGACCTCCA 59.809 55.000 0.00 0.00 38.24 3.86
1887 2188 1.400142 TGTTTGTTGCGACCAGTTGAG 59.600 47.619 0.45 0.00 0.00 3.02
1891 2192 1.138069 TGTTGCGACCAGTTGAGAGAA 59.862 47.619 0.45 0.00 0.00 2.87
1892 2193 2.224281 TGTTGCGACCAGTTGAGAGAAT 60.224 45.455 0.45 0.00 0.00 2.40
1919 2220 4.144297 AGGAATGCTCTGCTGTAAAACAA 58.856 39.130 0.00 0.00 0.00 2.83
1981 2282 9.956720 GAAATGGATTCGTTCATCATAAAAGAT 57.043 29.630 0.00 0.00 0.00 2.40
1990 2291 6.292703 CGTTCATCATAAAAGATAACGACCCC 60.293 42.308 0.00 0.00 37.28 4.95
1991 2292 6.241882 TCATCATAAAAGATAACGACCCCA 57.758 37.500 0.00 0.00 0.00 4.96
1992 2293 6.654959 TCATCATAAAAGATAACGACCCCAA 58.345 36.000 0.00 0.00 0.00 4.12
1993 2294 7.287061 TCATCATAAAAGATAACGACCCCAAT 58.713 34.615 0.00 0.00 0.00 3.16
1994 2295 8.433599 TCATCATAAAAGATAACGACCCCAATA 58.566 33.333 0.00 0.00 0.00 1.90
1995 2296 9.062524 CATCATAAAAGATAACGACCCCAATAA 57.937 33.333 0.00 0.00 0.00 1.40
1996 2297 8.441312 TCATAAAAGATAACGACCCCAATAAC 57.559 34.615 0.00 0.00 0.00 1.89
1997 2298 5.806366 AAAAGATAACGACCCCAATAACG 57.194 39.130 0.00 0.00 0.00 3.18
1998 2299 2.830104 AGATAACGACCCCAATAACGC 58.170 47.619 0.00 0.00 0.00 4.84
1999 2300 1.869132 GATAACGACCCCAATAACGCC 59.131 52.381 0.00 0.00 0.00 5.68
2000 2301 0.107752 TAACGACCCCAATAACGCCC 60.108 55.000 0.00 0.00 0.00 6.13
2001 2302 2.515290 CGACCCCAATAACGCCCC 60.515 66.667 0.00 0.00 0.00 5.80
2002 2303 2.515290 GACCCCAATAACGCCCCG 60.515 66.667 0.00 0.00 0.00 5.73
2003 2304 3.010314 ACCCCAATAACGCCCCGA 61.010 61.111 0.00 0.00 0.00 5.14
2004 2305 2.272797 CCCCAATAACGCCCCGAA 59.727 61.111 0.00 0.00 0.00 4.30
2005 2306 1.378778 CCCCAATAACGCCCCGAAA 60.379 57.895 0.00 0.00 0.00 3.46
2006 2307 1.381165 CCCCAATAACGCCCCGAAAG 61.381 60.000 0.00 0.00 0.00 2.62
2007 2308 0.678684 CCCAATAACGCCCCGAAAGT 60.679 55.000 0.00 0.00 0.00 2.66
2008 2309 1.170442 CCAATAACGCCCCGAAAGTT 58.830 50.000 0.00 0.00 0.00 2.66
2009 2310 1.131693 CCAATAACGCCCCGAAAGTTC 59.868 52.381 0.00 0.00 0.00 3.01
2021 2322 2.683968 CGAAAGTTCGGAATCTGACCA 58.316 47.619 5.53 0.00 46.30 4.02
2022 2323 3.262420 CGAAAGTTCGGAATCTGACCAT 58.738 45.455 5.53 0.00 46.30 3.55
2023 2324 3.062639 CGAAAGTTCGGAATCTGACCATG 59.937 47.826 5.53 0.00 46.30 3.66
2024 2325 2.698855 AGTTCGGAATCTGACCATGG 57.301 50.000 11.19 11.19 0.00 3.66
2025 2326 1.017387 GTTCGGAATCTGACCATGGC 58.983 55.000 13.04 5.35 0.00 4.40
2031 2332 3.025978 GGAATCTGACCATGGCAAATCA 58.974 45.455 13.04 7.16 0.00 2.57
2034 2335 5.395990 GGAATCTGACCATGGCAAATCAAAT 60.396 40.000 13.04 0.00 0.00 2.32
2036 2337 3.833650 TCTGACCATGGCAAATCAAATGT 59.166 39.130 13.04 0.00 0.00 2.71
2038 2339 4.567971 TGACCATGGCAAATCAAATGTTC 58.432 39.130 13.04 0.00 0.00 3.18
2039 2340 4.283978 TGACCATGGCAAATCAAATGTTCT 59.716 37.500 13.04 0.00 0.00 3.01
2040 2341 4.824289 ACCATGGCAAATCAAATGTTCTC 58.176 39.130 13.04 0.00 0.00 2.87
2041 2342 3.861113 CCATGGCAAATCAAATGTTCTCG 59.139 43.478 0.00 0.00 0.00 4.04
2043 2344 4.159377 TGGCAAATCAAATGTTCTCGAC 57.841 40.909 0.00 0.00 0.00 4.20
2044 2345 3.567585 TGGCAAATCAAATGTTCTCGACA 59.432 39.130 0.00 0.00 43.71 4.35
2054 2355 7.077605 TCAAATGTTCTCGACAGCAATTTTAG 58.922 34.615 0.00 0.00 42.62 1.85
2055 2356 4.404507 TGTTCTCGACAGCAATTTTAGC 57.595 40.909 0.00 0.00 33.40 3.09
2056 2357 3.812609 TGTTCTCGACAGCAATTTTAGCA 59.187 39.130 0.00 0.00 33.40 3.49
2061 2362 1.985684 GACAGCAATTTTAGCAACGCC 59.014 47.619 0.00 0.00 0.00 5.68
2065 2366 1.349234 CAATTTTAGCAACGCCAGGC 58.651 50.000 0.00 0.00 0.00 4.85
2077 2437 4.012895 CCAGGCGTGCGTGTCAAC 62.013 66.667 12.86 0.00 0.00 3.18
2085 2445 2.887733 CGTGCGTGTCAACTAAACTTC 58.112 47.619 0.00 0.00 0.00 3.01
2090 2450 3.120304 GCGTGTCAACTAAACTTCCCATC 60.120 47.826 0.00 0.00 0.00 3.51
2095 2455 2.678336 CAACTAAACTTCCCATCCTCGC 59.322 50.000 0.00 0.00 0.00 5.03
2112 2472 2.845967 CTCGCGTCATTAAAATTGCCAC 59.154 45.455 5.77 0.00 0.00 5.01
2113 2473 2.486203 TCGCGTCATTAAAATTGCCACT 59.514 40.909 5.77 0.00 0.00 4.00
2123 2483 6.576551 TTAAAATTGCCACTGAAAACGTTC 57.423 33.333 0.00 0.00 0.00 3.95
2129 2489 3.560481 TGCCACTGAAAACGTTCGATTTA 59.440 39.130 0.00 0.00 36.46 1.40
2131 2491 4.460505 CCACTGAAAACGTTCGATTTACC 58.539 43.478 0.00 0.00 36.46 2.85
2137 2497 5.008811 TGAAAACGTTCGATTTACCATGGTT 59.991 36.000 25.38 4.60 36.46 3.67
2138 2498 4.673534 AACGTTCGATTTACCATGGTTC 57.326 40.909 25.38 13.99 0.00 3.62
2139 2499 2.669434 ACGTTCGATTTACCATGGTTCG 59.331 45.455 25.38 25.17 0.00 3.95
2140 2500 2.029970 CGTTCGATTTACCATGGTTCGG 59.970 50.000 28.37 14.67 0.00 4.30
2141 2501 1.658994 TCGATTTACCATGGTTCGGC 58.341 50.000 28.37 14.79 0.00 5.54
2168 2602 2.230660 GCCTTGCTTTACTGACCAAGT 58.769 47.619 0.00 0.00 43.40 3.16
2182 2616 6.533730 ACTGACCAAGTTTCTCATGTGATAA 58.466 36.000 0.00 0.00 34.57 1.75
2184 2618 6.768483 TGACCAAGTTTCTCATGTGATAAGA 58.232 36.000 0.00 0.00 0.00 2.10
2185 2619 6.650807 TGACCAAGTTTCTCATGTGATAAGAC 59.349 38.462 0.00 0.00 0.00 3.01
2186 2620 5.639506 ACCAAGTTTCTCATGTGATAAGACG 59.360 40.000 0.00 0.00 0.00 4.18
2187 2621 5.869344 CCAAGTTTCTCATGTGATAAGACGA 59.131 40.000 0.00 0.00 0.00 4.20
2188 2622 6.536582 CCAAGTTTCTCATGTGATAAGACGAT 59.463 38.462 0.00 0.00 0.00 3.73
2189 2623 7.254252 CCAAGTTTCTCATGTGATAAGACGATC 60.254 40.741 0.00 0.00 0.00 3.69
2190 2624 7.106439 AGTTTCTCATGTGATAAGACGATCT 57.894 36.000 0.00 0.00 0.00 2.75
2191 2625 7.551585 AGTTTCTCATGTGATAAGACGATCTT 58.448 34.615 0.00 0.00 40.35 2.40
2192 2626 8.687242 AGTTTCTCATGTGATAAGACGATCTTA 58.313 33.333 9.04 9.04 42.49 2.10
2202 2636 9.751542 GTGATAAGACGATCTTATATTATGGGG 57.248 37.037 15.60 0.00 46.46 4.96
2203 2637 8.421784 TGATAAGACGATCTTATATTATGGGGC 58.578 37.037 15.60 5.80 46.46 5.80
2204 2638 6.620877 AAGACGATCTTATATTATGGGGCA 57.379 37.500 0.00 0.00 34.42 5.36
2205 2639 6.227298 AGACGATCTTATATTATGGGGCAG 57.773 41.667 0.00 0.00 0.00 4.85
2206 2640 5.958380 AGACGATCTTATATTATGGGGCAGA 59.042 40.000 0.00 0.00 0.00 4.26
2207 2641 6.097554 AGACGATCTTATATTATGGGGCAGAG 59.902 42.308 0.00 0.00 0.00 3.35
2208 2642 5.129485 ACGATCTTATATTATGGGGCAGAGG 59.871 44.000 0.00 0.00 0.00 3.69
2209 2643 5.453903 CGATCTTATATTATGGGGCAGAGGG 60.454 48.000 0.00 0.00 0.00 4.30
2210 2644 5.036470 TCTTATATTATGGGGCAGAGGGA 57.964 43.478 0.00 0.00 0.00 4.20
2211 2645 5.032846 TCTTATATTATGGGGCAGAGGGAG 58.967 45.833 0.00 0.00 0.00 4.30
2212 2646 2.815357 TATTATGGGGCAGAGGGAGT 57.185 50.000 0.00 0.00 0.00 3.85
2213 2647 2.815357 ATTATGGGGCAGAGGGAGTA 57.185 50.000 0.00 0.00 0.00 2.59
2224 2658 5.071923 GGGCAGAGGGAGTAGTTAATTATGT 59.928 44.000 0.00 0.00 0.00 2.29
2279 2748 2.092323 GCAGGCAGGTTAAGGTTAAGG 58.908 52.381 0.00 0.00 0.00 2.69
2280 2749 2.092323 CAGGCAGGTTAAGGTTAAGGC 58.908 52.381 0.00 0.00 0.00 4.35
2281 2750 1.005569 AGGCAGGTTAAGGTTAAGGCC 59.994 52.381 0.00 0.00 36.53 5.19
2282 2751 1.471119 GCAGGTTAAGGTTAAGGCCC 58.529 55.000 0.00 0.00 0.00 5.80
2283 2752 1.746470 CAGGTTAAGGTTAAGGCCCG 58.254 55.000 0.00 0.00 0.00 6.13
2295 2773 3.723922 GGCCCGGCCTCCTGTTTA 61.724 66.667 22.31 0.00 46.69 2.01
2309 2787 5.016051 TCCTGTTTAGCTCTGCTATGAAG 57.984 43.478 0.00 0.00 41.01 3.02
2311 2789 5.656859 TCCTGTTTAGCTCTGCTATGAAGTA 59.343 40.000 0.00 0.00 41.01 2.24
2339 2817 2.799562 GCAACCCAGACAAGAAGCAAAC 60.800 50.000 0.00 0.00 0.00 2.93
2340 2818 2.689983 CAACCCAGACAAGAAGCAAACT 59.310 45.455 0.00 0.00 0.00 2.66
2348 2826 4.702131 AGACAAGAAGCAAACTGAAACTGT 59.298 37.500 0.00 0.00 0.00 3.55
2349 2827 4.737054 ACAAGAAGCAAACTGAAACTGTG 58.263 39.130 0.00 0.00 0.00 3.66
2351 2829 5.048083 ACAAGAAGCAAACTGAAACTGTGAA 60.048 36.000 0.00 0.00 0.00 3.18
2352 2830 4.986622 AGAAGCAAACTGAAACTGTGAAC 58.013 39.130 0.00 0.00 0.00 3.18
2353 2831 3.782889 AGCAAACTGAAACTGTGAACC 57.217 42.857 0.00 0.00 0.00 3.62
2372 2861 1.086696 CCAGACACCTAAATGCCACG 58.913 55.000 0.00 0.00 0.00 4.94
2420 2909 4.722220 TGCAATCAATTAGGAGAGATGGG 58.278 43.478 0.00 0.00 0.00 4.00
2421 2910 4.413189 TGCAATCAATTAGGAGAGATGGGA 59.587 41.667 0.00 0.00 0.00 4.37
2422 2911 5.074102 TGCAATCAATTAGGAGAGATGGGAT 59.926 40.000 0.00 0.00 0.00 3.85
2455 2944 4.333649 CACATCAACTAATACACAGGCTGG 59.666 45.833 20.34 10.34 0.00 4.85
2488 2978 0.325203 AGGAGAGAGAGCCCCAACTC 60.325 60.000 0.00 0.00 36.91 3.01
2568 3058 4.391523 GCTTCTGTTTCTCTTCAGTCATCC 59.608 45.833 0.00 0.00 33.89 3.51
2600 3090 1.065199 CAGCCATGGAGCCTGTCTAAA 60.065 52.381 18.40 0.00 0.00 1.85
2601 3091 1.635487 AGCCATGGAGCCTGTCTAAAA 59.365 47.619 18.40 0.00 0.00 1.52
2657 3147 4.250305 ACGCCGTTGCACTTCCCT 62.250 61.111 0.00 0.00 37.32 4.20
2660 3150 2.359975 CCGTTGCACTTCCCTCCC 60.360 66.667 0.00 0.00 0.00 4.30
2661 3151 2.359975 CGTTGCACTTCCCTCCCC 60.360 66.667 0.00 0.00 0.00 4.81
2662 3152 2.035783 GTTGCACTTCCCTCCCCC 59.964 66.667 0.00 0.00 0.00 5.40
2738 3229 1.003233 GGCTGGCTTCTTCCGTTCT 60.003 57.895 0.00 0.00 0.00 3.01
2905 3396 0.667487 CTTTGTCGCTCGCTCCTTCA 60.667 55.000 0.00 0.00 0.00 3.02
3093 3584 2.014857 CCCTGACATGTGATTCAGCAG 58.985 52.381 1.15 1.91 38.36 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
159 162 0.325860 ACAGTAAGTATCCGCCCCCA 60.326 55.000 0.00 0.00 0.00 4.96
200 203 2.047274 CCCCTGTTCGTCACGCAT 60.047 61.111 0.00 0.00 0.00 4.73
331 353 1.300481 GATTAGAAACAGGGGAGCGC 58.700 55.000 0.00 0.00 0.00 5.92
391 413 0.680921 CTGGCCACAACGGAATCCAT 60.681 55.000 0.00 0.00 36.56 3.41
412 434 2.162408 GTCGCTCTTTTGCATTTAGCCT 59.838 45.455 0.00 0.00 44.83 4.58
497 519 1.216178 GCACGTACACGGTGGGTAT 59.784 57.895 13.48 0.00 44.95 2.73
527 549 5.853081 TGAATACGATGTGACGTGAAAATG 58.147 37.500 0.00 0.00 46.02 2.32
594 616 5.399858 GTCACTATAGTTGCGACTGAAGAA 58.600 41.667 17.36 0.00 36.60 2.52
595 617 4.142447 GGTCACTATAGTTGCGACTGAAGA 60.142 45.833 17.36 4.86 36.60 2.87
638 660 6.906901 AGAGGGAAGTCCATATTTACAACCTA 59.093 38.462 0.00 0.00 38.24 3.08
639 661 5.731678 AGAGGGAAGTCCATATTTACAACCT 59.268 40.000 0.00 0.00 38.24 3.50
641 663 6.316390 CACAGAGGGAAGTCCATATTTACAAC 59.684 42.308 0.00 0.00 38.24 3.32
642 664 6.012858 ACACAGAGGGAAGTCCATATTTACAA 60.013 38.462 0.00 0.00 38.24 2.41
643 665 5.487488 ACACAGAGGGAAGTCCATATTTACA 59.513 40.000 0.00 0.00 38.24 2.41
644 666 5.817816 CACACAGAGGGAAGTCCATATTTAC 59.182 44.000 0.00 0.00 38.24 2.01
645 667 5.724370 TCACACAGAGGGAAGTCCATATTTA 59.276 40.000 0.00 0.00 38.24 1.40
646 668 4.536090 TCACACAGAGGGAAGTCCATATTT 59.464 41.667 0.00 0.00 38.24 1.40
647 669 4.104086 TCACACAGAGGGAAGTCCATATT 58.896 43.478 0.00 0.00 38.24 1.28
648 670 3.708631 CTCACACAGAGGGAAGTCCATAT 59.291 47.826 0.00 0.00 40.84 1.78
649 671 3.099905 CTCACACAGAGGGAAGTCCATA 58.900 50.000 0.00 0.00 40.84 2.74
650 672 1.905215 CTCACACAGAGGGAAGTCCAT 59.095 52.381 0.00 0.00 40.84 3.41
651 673 1.342074 CTCACACAGAGGGAAGTCCA 58.658 55.000 0.00 0.00 40.84 4.02
660 682 2.351253 CGTGACTTCTCCTCACACAGAG 60.351 54.545 0.00 0.00 44.31 3.35
661 683 1.609072 CGTGACTTCTCCTCACACAGA 59.391 52.381 0.00 0.00 38.38 3.41
662 684 1.336332 CCGTGACTTCTCCTCACACAG 60.336 57.143 0.00 0.00 38.38 3.66
663 685 0.673985 CCGTGACTTCTCCTCACACA 59.326 55.000 0.00 0.00 38.38 3.72
664 686 0.667792 GCCGTGACTTCTCCTCACAC 60.668 60.000 0.00 0.00 38.38 3.82
665 687 1.666011 GCCGTGACTTCTCCTCACA 59.334 57.895 0.00 0.00 38.38 3.58
666 688 1.444553 CGCCGTGACTTCTCCTCAC 60.445 63.158 0.00 0.00 35.61 3.51
667 689 2.962569 CGCCGTGACTTCTCCTCA 59.037 61.111 0.00 0.00 0.00 3.86
668 690 2.507324 GCGCCGTGACTTCTCCTC 60.507 66.667 0.00 0.00 0.00 3.71
669 691 4.070552 GGCGCCGTGACTTCTCCT 62.071 66.667 12.58 0.00 0.00 3.69
684 706 2.747855 CCTTGACTTCGCAGGGGC 60.748 66.667 0.00 0.00 31.84 5.80
685 707 0.250727 TTTCCTTGACTTCGCAGGGG 60.251 55.000 0.00 0.00 35.85 4.79
686 708 0.875059 GTTTCCTTGACTTCGCAGGG 59.125 55.000 0.00 0.00 36.44 4.45
687 709 0.512952 CGTTTCCTTGACTTCGCAGG 59.487 55.000 0.00 0.00 0.00 4.85
688 710 0.110644 GCGTTTCCTTGACTTCGCAG 60.111 55.000 0.00 0.00 42.54 5.18
689 711 1.938861 GCGTTTCCTTGACTTCGCA 59.061 52.632 0.00 0.00 42.54 5.10
690 712 0.306533 TTGCGTTTCCTTGACTTCGC 59.693 50.000 0.00 0.00 43.14 4.70
691 713 1.660333 GCTTGCGTTTCCTTGACTTCG 60.660 52.381 0.00 0.00 0.00 3.79
692 714 1.335051 GGCTTGCGTTTCCTTGACTTC 60.335 52.381 0.00 0.00 0.00 3.01
693 715 0.668535 GGCTTGCGTTTCCTTGACTT 59.331 50.000 0.00 0.00 0.00 3.01
694 716 1.507141 CGGCTTGCGTTTCCTTGACT 61.507 55.000 0.00 0.00 0.00 3.41
695 717 1.082104 CGGCTTGCGTTTCCTTGAC 60.082 57.895 0.00 0.00 0.00 3.18
696 718 2.903547 GCGGCTTGCGTTTCCTTGA 61.904 57.895 0.00 0.00 0.00 3.02
697 719 2.429069 GCGGCTTGCGTTTCCTTG 60.429 61.111 0.00 0.00 0.00 3.61
707 729 2.358247 AAGTGGTACGGCGGCTTG 60.358 61.111 13.24 0.00 0.00 4.01
708 730 2.047560 GAAGTGGTACGGCGGCTT 60.048 61.111 13.24 7.22 0.00 4.35
709 731 4.078516 GGAAGTGGTACGGCGGCT 62.079 66.667 13.24 0.00 0.00 5.52
711 733 4.060038 ACGGAAGTGGTACGGCGG 62.060 66.667 13.24 0.00 46.97 6.13
727 749 4.577742 CCAAGTTTGGTAGCGTTTTGCAC 61.578 47.826 2.66 0.00 44.51 4.57
728 750 2.480416 CCAAGTTTGGTAGCGTTTTGCA 60.480 45.455 2.66 0.00 44.51 4.08
729 751 2.124122 CCAAGTTTGGTAGCGTTTTGC 58.876 47.619 2.66 0.00 43.43 3.68
748 770 1.467920 CCTTTCTTGCATGGACTCCC 58.532 55.000 0.00 0.00 0.00 4.30
749 771 0.813821 GCCTTTCTTGCATGGACTCC 59.186 55.000 0.00 0.00 0.00 3.85
750 772 0.449388 CGCCTTTCTTGCATGGACTC 59.551 55.000 0.00 0.00 0.00 3.36
751 773 1.589716 GCGCCTTTCTTGCATGGACT 61.590 55.000 0.00 0.00 0.00 3.85
752 774 1.153958 GCGCCTTTCTTGCATGGAC 60.154 57.895 0.00 0.00 0.00 4.02
753 775 1.177895 TTGCGCCTTTCTTGCATGGA 61.178 50.000 4.18 0.00 38.60 3.41
754 776 0.734942 CTTGCGCCTTTCTTGCATGG 60.735 55.000 4.18 0.00 38.60 3.66
755 777 0.734942 CCTTGCGCCTTTCTTGCATG 60.735 55.000 4.18 0.00 38.60 4.06
756 778 0.895100 TCCTTGCGCCTTTCTTGCAT 60.895 50.000 4.18 0.00 38.60 3.96
757 779 1.106351 TTCCTTGCGCCTTTCTTGCA 61.106 50.000 4.18 0.00 36.72 4.08
758 780 0.387750 CTTCCTTGCGCCTTTCTTGC 60.388 55.000 4.18 0.00 0.00 4.01
759 781 0.242017 CCTTCCTTGCGCCTTTCTTG 59.758 55.000 4.18 0.00 0.00 3.02
760 782 0.110486 TCCTTCCTTGCGCCTTTCTT 59.890 50.000 4.18 0.00 0.00 2.52
761 783 0.110486 TTCCTTCCTTGCGCCTTTCT 59.890 50.000 4.18 0.00 0.00 2.52
762 784 1.135286 CATTCCTTCCTTGCGCCTTTC 60.135 52.381 4.18 0.00 0.00 2.62
763 785 0.890683 CATTCCTTCCTTGCGCCTTT 59.109 50.000 4.18 0.00 0.00 3.11
764 786 1.598701 GCATTCCTTCCTTGCGCCTT 61.599 55.000 4.18 0.00 0.00 4.35
765 787 2.048603 GCATTCCTTCCTTGCGCCT 61.049 57.895 4.18 0.00 0.00 5.52
766 788 1.876497 TTGCATTCCTTCCTTGCGCC 61.876 55.000 4.18 0.00 39.23 6.53
767 789 0.733909 GTTGCATTCCTTCCTTGCGC 60.734 55.000 0.00 0.00 39.23 6.09
768 790 0.109132 GGTTGCATTCCTTCCTTGCG 60.109 55.000 0.00 0.00 39.23 4.85
769 791 0.109132 CGGTTGCATTCCTTCCTTGC 60.109 55.000 6.83 0.00 36.91 4.01
770 792 1.533625 TCGGTTGCATTCCTTCCTTG 58.466 50.000 6.83 0.00 0.00 3.61
771 793 2.162681 CTTCGGTTGCATTCCTTCCTT 58.837 47.619 6.83 0.00 0.00 3.36
772 794 1.073923 ACTTCGGTTGCATTCCTTCCT 59.926 47.619 6.83 0.00 0.00 3.36
773 795 1.468914 GACTTCGGTTGCATTCCTTCC 59.531 52.381 6.83 0.00 0.00 3.46
774 796 1.128692 CGACTTCGGTTGCATTCCTTC 59.871 52.381 6.83 0.00 35.37 3.46
775 797 1.156736 CGACTTCGGTTGCATTCCTT 58.843 50.000 6.83 0.00 35.37 3.36
776 798 2.840974 CGACTTCGGTTGCATTCCT 58.159 52.632 6.83 0.00 35.37 3.36
819 841 4.072088 GTGTTTCGCTCACGGCCG 62.072 66.667 26.86 26.86 40.63 6.13
820 842 3.723348 GGTGTTTCGCTCACGGCC 61.723 66.667 0.00 0.00 40.63 6.13
821 843 4.072088 CGGTGTTTCGCTCACGGC 62.072 66.667 0.00 0.00 40.63 5.68
822 844 3.411351 CCGGTGTTTCGCTCACGG 61.411 66.667 0.00 0.00 40.63 4.94
823 845 4.072088 GCCGGTGTTTCGCTCACG 62.072 66.667 1.90 0.00 42.01 4.35
824 846 3.723348 GGCCGGTGTTTCGCTCAC 61.723 66.667 1.90 0.00 35.36 3.51
828 850 3.919973 TAGTCGGCCGGTGTTTCGC 62.920 63.158 27.83 5.60 0.00 4.70
829 851 1.804326 CTAGTCGGCCGGTGTTTCG 60.804 63.158 27.83 3.75 0.00 3.46
830 852 1.447314 CCTAGTCGGCCGGTGTTTC 60.447 63.158 27.83 9.10 0.00 2.78
831 853 2.660802 CCTAGTCGGCCGGTGTTT 59.339 61.111 27.83 9.10 0.00 2.83
849 871 0.870307 GTGACGGCCTATGCGTGTAG 60.870 60.000 0.00 0.00 38.85 2.74
850 872 1.140161 GTGACGGCCTATGCGTGTA 59.860 57.895 0.00 0.00 38.85 2.90
851 873 2.125673 GTGACGGCCTATGCGTGT 60.126 61.111 0.00 0.00 38.85 4.49
852 874 2.011741 TAGGTGACGGCCTATGCGTG 62.012 60.000 0.00 0.00 39.94 5.34
853 875 1.735376 CTAGGTGACGGCCTATGCGT 61.735 60.000 0.00 0.00 40.07 5.24
854 876 1.007271 CTAGGTGACGGCCTATGCG 60.007 63.158 0.00 0.00 40.07 4.73
855 877 0.315568 CTCTAGGTGACGGCCTATGC 59.684 60.000 0.00 0.00 40.07 3.14
856 878 1.982660 TCTCTAGGTGACGGCCTATG 58.017 55.000 0.00 0.00 40.07 2.23
857 879 2.588620 CTTCTCTAGGTGACGGCCTAT 58.411 52.381 0.00 0.00 40.07 2.57
858 880 2.022754 GCTTCTCTAGGTGACGGCCTA 61.023 57.143 0.00 0.00 39.94 3.93
859 881 1.324005 GCTTCTCTAGGTGACGGCCT 61.324 60.000 0.00 0.00 42.43 5.19
860 882 1.142097 GCTTCTCTAGGTGACGGCC 59.858 63.158 0.00 0.00 0.00 6.13
861 883 0.246635 TTGCTTCTCTAGGTGACGGC 59.753 55.000 0.00 0.00 0.00 5.68
862 884 1.732732 CGTTGCTTCTCTAGGTGACGG 60.733 57.143 0.00 0.00 0.00 4.79
863 885 1.618861 CGTTGCTTCTCTAGGTGACG 58.381 55.000 0.00 0.00 0.00 4.35
864 886 1.404315 CCCGTTGCTTCTCTAGGTGAC 60.404 57.143 0.00 0.00 0.00 3.67
865 887 0.895530 CCCGTTGCTTCTCTAGGTGA 59.104 55.000 0.00 0.00 0.00 4.02
866 888 0.741221 GCCCGTTGCTTCTCTAGGTG 60.741 60.000 0.00 0.00 36.87 4.00
867 889 1.192146 TGCCCGTTGCTTCTCTAGGT 61.192 55.000 0.00 0.00 42.00 3.08
868 890 0.036388 TTGCCCGTTGCTTCTCTAGG 60.036 55.000 0.00 0.00 42.00 3.02
869 891 1.667724 CATTGCCCGTTGCTTCTCTAG 59.332 52.381 0.00 0.00 42.00 2.43
870 892 1.737838 CATTGCCCGTTGCTTCTCTA 58.262 50.000 0.00 0.00 42.00 2.43
871 893 1.589716 GCATTGCCCGTTGCTTCTCT 61.590 55.000 0.00 0.00 42.00 3.10
872 894 1.153958 GCATTGCCCGTTGCTTCTC 60.154 57.895 0.00 0.00 42.00 2.87
873 895 1.604593 AGCATTGCCCGTTGCTTCT 60.605 52.632 4.70 0.00 46.71 2.85
874 896 2.964978 AGCATTGCCCGTTGCTTC 59.035 55.556 4.70 0.00 46.71 3.86
877 899 3.553039 CAAAGCATTGCCCGTTGC 58.447 55.556 4.70 0.00 39.17 4.17
885 907 1.812571 ACGGAGTAAGGCAAAGCATTG 59.187 47.619 0.00 0.00 41.94 2.82
886 908 2.200373 ACGGAGTAAGGCAAAGCATT 57.800 45.000 0.00 0.00 41.94 3.56
887 909 1.812571 CAACGGAGTAAGGCAAAGCAT 59.187 47.619 0.00 0.00 45.00 3.79
888 910 1.234821 CAACGGAGTAAGGCAAAGCA 58.765 50.000 0.00 0.00 45.00 3.91
889 911 0.521735 CCAACGGAGTAAGGCAAAGC 59.478 55.000 0.00 0.00 45.00 3.51
890 912 1.535462 CACCAACGGAGTAAGGCAAAG 59.465 52.381 0.00 0.00 45.00 2.77
891 913 1.141254 TCACCAACGGAGTAAGGCAAA 59.859 47.619 0.00 0.00 45.00 3.68
892 914 0.759959 TCACCAACGGAGTAAGGCAA 59.240 50.000 0.00 0.00 45.00 4.52
893 915 0.759959 TTCACCAACGGAGTAAGGCA 59.240 50.000 0.00 0.00 45.00 4.75
894 916 1.439679 CTTCACCAACGGAGTAAGGC 58.560 55.000 0.00 0.00 45.00 4.35
895 917 1.270625 TGCTTCACCAACGGAGTAAGG 60.271 52.381 0.00 0.00 45.00 2.69
896 918 2.163818 TGCTTCACCAACGGAGTAAG 57.836 50.000 0.00 0.00 45.00 2.34
897 919 2.215196 GTTGCTTCACCAACGGAGTAA 58.785 47.619 0.00 0.00 45.00 2.24
898 920 1.873698 GTTGCTTCACCAACGGAGTA 58.126 50.000 0.00 0.00 45.00 2.59
904 926 1.634702 TTTTGCGTTGCTTCACCAAC 58.365 45.000 0.00 0.00 41.21 3.77
905 927 2.370281 TTTTTGCGTTGCTTCACCAA 57.630 40.000 0.00 0.00 0.00 3.67
924 946 4.642429 AGGTTTCGTTGCTAGTCATCTTT 58.358 39.130 0.00 0.00 0.00 2.52
929 951 2.367567 AGGAAGGTTTCGTTGCTAGTCA 59.632 45.455 0.00 0.00 28.98 3.41
932 954 3.609409 GCAAAGGAAGGTTTCGTTGCTAG 60.609 47.826 12.74 0.00 42.91 3.42
935 957 1.067060 AGCAAAGGAAGGTTTCGTTGC 59.933 47.619 12.25 12.25 44.81 4.17
937 959 2.100749 CCAAGCAAAGGAAGGTTTCGTT 59.899 45.455 0.00 0.00 39.24 3.85
944 966 4.262036 GGAAGTAAACCAAGCAAAGGAAGG 60.262 45.833 0.00 0.00 0.00 3.46
952 974 0.891904 GCCGGGAAGTAAACCAAGCA 60.892 55.000 2.18 0.00 0.00 3.91
953 975 1.592400 GGCCGGGAAGTAAACCAAGC 61.592 60.000 2.18 0.00 0.00 4.01
954 976 0.037734 AGGCCGGGAAGTAAACCAAG 59.962 55.000 2.18 0.00 0.00 3.61
957 979 1.378119 CCAGGCCGGGAAGTAAACC 60.378 63.158 18.42 0.00 0.00 3.27
958 980 2.044555 GCCAGGCCGGGAAGTAAAC 61.045 63.158 27.79 1.37 34.06 2.01
959 981 2.193087 GAGCCAGGCCGGGAAGTAAA 62.193 60.000 27.79 0.00 34.06 2.01
989 1011 4.692228 CTTTCTTTAAGGTGGCAAGCAAA 58.308 39.130 0.00 0.00 0.00 3.68
990 1012 3.492482 GCTTTCTTTAAGGTGGCAAGCAA 60.492 43.478 0.00 0.00 36.11 3.91
991 1013 2.035832 GCTTTCTTTAAGGTGGCAAGCA 59.964 45.455 0.00 0.00 36.11 3.91
992 1014 2.035832 TGCTTTCTTTAAGGTGGCAAGC 59.964 45.455 0.00 0.00 36.51 4.01
993 1015 4.320608 TTGCTTTCTTTAAGGTGGCAAG 57.679 40.909 12.27 0.00 34.09 4.01
994 1016 4.630111 CATTGCTTTCTTTAAGGTGGCAA 58.370 39.130 16.14 16.14 41.31 4.52
1011 1033 2.882761 TCTGCTTATCCATCTGCATTGC 59.117 45.455 0.46 0.46 34.79 3.56
1015 1037 3.495629 GGTCATCTGCTTATCCATCTGCA 60.496 47.826 0.00 0.00 0.00 4.41
1016 1038 3.072944 GGTCATCTGCTTATCCATCTGC 58.927 50.000 0.00 0.00 0.00 4.26
1017 1039 3.324117 CGGTCATCTGCTTATCCATCTG 58.676 50.000 0.00 0.00 0.00 2.90
1019 1041 2.693069 CCGGTCATCTGCTTATCCATC 58.307 52.381 0.00 0.00 0.00 3.51
1020 1042 1.271054 GCCGGTCATCTGCTTATCCAT 60.271 52.381 1.90 0.00 0.00 3.41
1021 1043 0.106708 GCCGGTCATCTGCTTATCCA 59.893 55.000 1.90 0.00 0.00 3.41
1022 1044 0.603975 GGCCGGTCATCTGCTTATCC 60.604 60.000 0.00 0.00 0.00 2.59
1044 1066 2.591715 GGATGGATTCACGCCGGG 60.592 66.667 2.18 0.00 0.00 5.73
1045 1067 1.227943 ATGGATGGATTCACGCCGG 60.228 57.895 0.00 0.00 0.00 6.13
1046 1068 0.250038 AGATGGATGGATTCACGCCG 60.250 55.000 0.00 0.00 0.00 6.46
1047 1069 2.839486 TAGATGGATGGATTCACGCC 57.161 50.000 0.00 0.00 0.00 5.68
1048 1070 4.261197 GGTTTTAGATGGATGGATTCACGC 60.261 45.833 0.00 0.00 0.00 5.34
1050 1072 4.584743 GGGGTTTTAGATGGATGGATTCAC 59.415 45.833 0.00 0.00 0.00 3.18
1051 1073 4.482025 AGGGGTTTTAGATGGATGGATTCA 59.518 41.667 0.00 0.00 0.00 2.57
1052 1074 4.829492 CAGGGGTTTTAGATGGATGGATTC 59.171 45.833 0.00 0.00 0.00 2.52
1053 1075 4.482025 TCAGGGGTTTTAGATGGATGGATT 59.518 41.667 0.00 0.00 0.00 3.01
1062 1084 1.961133 TCGGGTCAGGGGTTTTAGAT 58.039 50.000 0.00 0.00 0.00 1.98
1077 1099 1.142748 CCACTCTGCTAGCTTCGGG 59.857 63.158 17.23 6.92 0.00 5.14
1084 1106 2.790791 CCTCCGGCCACTCTGCTAG 61.791 68.421 2.24 0.00 0.00 3.42
1085 1107 2.759973 CCTCCGGCCACTCTGCTA 60.760 66.667 2.24 0.00 0.00 3.49
1098 1120 4.828296 CAGCCCCATGGTGCCTCC 62.828 72.222 16.28 0.00 35.35 4.30
1099 1121 4.052518 ACAGCCCCATGGTGCCTC 62.053 66.667 16.28 0.00 46.55 4.70
1100 1122 4.371417 CACAGCCCCATGGTGCCT 62.371 66.667 16.28 2.85 46.55 4.75
1185 1210 1.022982 TCGCCTCTGACGACGTACAT 61.023 55.000 0.00 0.00 33.96 2.29
1189 1214 3.432588 CCTCGCCTCTGACGACGT 61.433 66.667 0.00 0.00 35.35 4.34
1257 1282 2.357517 CGGTTTCTGGAGCTGCGT 60.358 61.111 0.00 0.00 0.00 5.24
1361 1389 2.219449 TAGTACCCAGCCGAGGAGCA 62.219 60.000 0.00 0.00 34.23 4.26
1362 1390 1.455217 TAGTACCCAGCCGAGGAGC 60.455 63.158 0.00 0.00 0.00 4.70
1394 1428 4.021925 GCACTTGGCTCGACCCCT 62.022 66.667 0.00 0.00 40.25 4.79
1412 1446 3.865929 CTTGAGCGTGGACGGCTGT 62.866 63.158 0.00 0.00 40.23 4.40
1414 1448 3.303135 TCTTGAGCGTGGACGGCT 61.303 61.111 0.71 0.00 40.23 5.52
1426 1460 3.348205 TCGCCGTCGTCGTCTTGA 61.348 61.111 0.71 0.00 36.96 3.02
1458 1492 4.096003 CCCCTGCGTCATCGGGTT 62.096 66.667 0.00 0.00 36.18 4.11
1582 1616 1.150135 TCCCCATCAGTATCCTCCTCC 59.850 57.143 0.00 0.00 0.00 4.30
1622 1656 4.093291 AGCAGGAGGCCGCTGAAG 62.093 66.667 6.40 0.00 46.50 3.02
1706 1740 9.961265 GTTGTAAATAAAGGCAAGTTTAGTCTT 57.039 29.630 0.00 0.00 0.00 3.01
1732 2025 6.447162 TCCGTATGACTCAAGCAACTATATG 58.553 40.000 0.00 0.00 0.00 1.78
1737 2030 2.563179 ACTCCGTATGACTCAAGCAACT 59.437 45.455 0.00 0.00 0.00 3.16
1746 2039 5.127845 ACATCAATCTGAACTCCGTATGACT 59.872 40.000 0.00 0.00 0.00 3.41
1748 2041 5.598416 ACATCAATCTGAACTCCGTATGA 57.402 39.130 0.00 0.00 0.00 2.15
1749 2042 6.507900 AGTACATCAATCTGAACTCCGTATG 58.492 40.000 0.00 0.00 0.00 2.39
1774 2069 3.759618 TGGAGAAAAACAGGTCAAAACGT 59.240 39.130 0.00 0.00 0.00 3.99
1856 2157 6.183360 TGGTCGCAACAAACAAACTAACTATT 60.183 34.615 0.00 0.00 0.00 1.73
1887 2188 3.560896 GCAGAGCATTCCTTCAGATTCTC 59.439 47.826 0.00 0.00 0.00 2.87
1891 2192 2.239150 ACAGCAGAGCATTCCTTCAGAT 59.761 45.455 0.00 0.00 0.00 2.90
1892 2193 1.627329 ACAGCAGAGCATTCCTTCAGA 59.373 47.619 0.00 0.00 0.00 3.27
1903 2204 4.265320 GTGTTTGTTGTTTTACAGCAGAGC 59.735 41.667 0.00 0.00 40.33 4.09
1969 2270 6.935741 TTGGGGTCGTTATCTTTTATGATG 57.064 37.500 0.00 0.00 0.00 3.07
1970 2271 9.063615 GTTATTGGGGTCGTTATCTTTTATGAT 57.936 33.333 0.00 0.00 0.00 2.45
1981 2282 0.107752 GGGCGTTATTGGGGTCGTTA 60.108 55.000 0.00 0.00 0.00 3.18
1983 2284 2.269883 GGGCGTTATTGGGGTCGT 59.730 61.111 0.00 0.00 0.00 4.34
1984 2285 2.515290 GGGGCGTTATTGGGGTCG 60.515 66.667 0.00 0.00 0.00 4.79
1990 2291 1.201987 CGAACTTTCGGGGCGTTATTG 60.202 52.381 3.35 0.00 46.30 1.90
1991 2292 1.081094 CGAACTTTCGGGGCGTTATT 58.919 50.000 3.35 0.00 46.30 1.40
1992 2293 2.758497 CGAACTTTCGGGGCGTTAT 58.242 52.632 3.35 0.00 46.30 1.89
1993 2294 4.265282 CGAACTTTCGGGGCGTTA 57.735 55.556 3.35 0.00 46.30 3.18
2002 2303 3.375299 CCATGGTCAGATTCCGAACTTTC 59.625 47.826 2.57 0.00 0.00 2.62
2003 2304 3.347216 CCATGGTCAGATTCCGAACTTT 58.653 45.455 2.57 0.00 0.00 2.66
2004 2305 2.941415 GCCATGGTCAGATTCCGAACTT 60.941 50.000 14.67 0.00 0.00 2.66
2005 2306 1.407437 GCCATGGTCAGATTCCGAACT 60.407 52.381 14.67 0.00 0.00 3.01
2006 2307 1.017387 GCCATGGTCAGATTCCGAAC 58.983 55.000 14.67 0.00 0.00 3.95
2007 2308 0.617935 TGCCATGGTCAGATTCCGAA 59.382 50.000 14.67 0.00 0.00 4.30
2008 2309 0.617935 TTGCCATGGTCAGATTCCGA 59.382 50.000 14.67 0.00 0.00 4.55
2009 2310 1.462616 TTTGCCATGGTCAGATTCCG 58.537 50.000 14.67 0.00 0.00 4.30
2010 2311 3.025978 TGATTTGCCATGGTCAGATTCC 58.974 45.455 14.67 3.19 0.00 3.01
2011 2312 4.724074 TTGATTTGCCATGGTCAGATTC 57.276 40.909 14.67 9.90 0.00 2.52
2012 2313 5.046159 ACATTTGATTTGCCATGGTCAGATT 60.046 36.000 14.67 1.09 0.00 2.40
2013 2314 4.468510 ACATTTGATTTGCCATGGTCAGAT 59.531 37.500 14.67 12.19 0.00 2.90
2014 2315 3.833650 ACATTTGATTTGCCATGGTCAGA 59.166 39.130 14.67 7.69 0.00 3.27
2015 2316 4.196626 ACATTTGATTTGCCATGGTCAG 57.803 40.909 14.67 0.29 0.00 3.51
2016 2317 4.283978 AGAACATTTGATTTGCCATGGTCA 59.716 37.500 14.67 9.23 36.04 4.02
2017 2318 4.824289 AGAACATTTGATTTGCCATGGTC 58.176 39.130 14.67 6.41 34.12 4.02
2018 2319 4.618927 CGAGAACATTTGATTTGCCATGGT 60.619 41.667 14.67 0.00 0.00 3.55
2019 2320 3.861113 CGAGAACATTTGATTTGCCATGG 59.139 43.478 7.63 7.63 0.00 3.66
2020 2321 4.560035 GTCGAGAACATTTGATTTGCCATG 59.440 41.667 0.00 0.00 0.00 3.66
2021 2322 4.218200 TGTCGAGAACATTTGATTTGCCAT 59.782 37.500 0.00 0.00 31.20 4.40
2022 2323 3.567585 TGTCGAGAACATTTGATTTGCCA 59.432 39.130 0.00 0.00 31.20 4.92
2023 2324 4.159377 TGTCGAGAACATTTGATTTGCC 57.841 40.909 0.00 0.00 31.20 4.52
2024 2325 3.605486 GCTGTCGAGAACATTTGATTTGC 59.395 43.478 0.00 0.00 37.23 3.68
2025 2326 4.786507 TGCTGTCGAGAACATTTGATTTG 58.213 39.130 0.00 0.00 37.23 2.32
2031 2332 5.858581 GCTAAAATTGCTGTCGAGAACATTT 59.141 36.000 0.00 0.00 37.23 2.32
2034 2335 3.812609 TGCTAAAATTGCTGTCGAGAACA 59.187 39.130 0.00 0.00 36.18 3.18
2036 2337 4.610456 CGTTGCTAAAATTGCTGTCGAGAA 60.610 41.667 0.00 0.00 0.00 2.87
2038 2339 3.155998 CGTTGCTAAAATTGCTGTCGAG 58.844 45.455 0.00 0.00 0.00 4.04
2039 2340 2.664424 GCGTTGCTAAAATTGCTGTCGA 60.664 45.455 0.00 0.00 0.00 4.20
2040 2341 1.643810 GCGTTGCTAAAATTGCTGTCG 59.356 47.619 0.00 0.00 0.00 4.35
2041 2342 1.985684 GGCGTTGCTAAAATTGCTGTC 59.014 47.619 0.00 0.00 0.00 3.51
2043 2344 1.987770 CTGGCGTTGCTAAAATTGCTG 59.012 47.619 0.00 0.00 0.00 4.41
2044 2345 1.067635 CCTGGCGTTGCTAAAATTGCT 60.068 47.619 0.00 0.00 0.00 3.91
2061 2362 1.218875 TTAGTTGACACGCACGCCTG 61.219 55.000 0.00 0.00 0.00 4.85
2065 2366 2.348218 GGAAGTTTAGTTGACACGCACG 60.348 50.000 0.00 0.00 0.00 5.34
2066 2367 2.032290 GGGAAGTTTAGTTGACACGCAC 60.032 50.000 0.00 0.00 0.00 5.34
2067 2368 2.215196 GGGAAGTTTAGTTGACACGCA 58.785 47.619 0.00 0.00 0.00 5.24
2070 2371 4.652822 AGGATGGGAAGTTTAGTTGACAC 58.347 43.478 0.00 0.00 0.00 3.67
2077 2437 1.134788 ACGCGAGGATGGGAAGTTTAG 60.135 52.381 15.93 0.00 0.00 1.85
2085 2445 1.948104 TTTAATGACGCGAGGATGGG 58.052 50.000 15.93 0.00 0.00 4.00
2090 2450 2.159448 TGGCAATTTTAATGACGCGAGG 60.159 45.455 15.93 0.00 0.00 4.63
2095 2455 6.580476 GTTTTCAGTGGCAATTTTAATGACG 58.420 36.000 0.00 0.00 0.00 4.35
2112 2472 5.086058 CCATGGTAAATCGAACGTTTTCAG 58.914 41.667 2.57 0.00 0.00 3.02
2113 2473 4.515944 ACCATGGTAAATCGAACGTTTTCA 59.484 37.500 18.10 0.00 0.00 2.69
2123 2483 0.661020 GGCCGAACCATGGTAAATCG 59.339 55.000 24.36 24.36 38.86 3.34
2141 2501 2.627699 TCAGTAAAGCAAGGCCTTTTGG 59.372 45.455 17.61 6.04 44.18 3.28
2143 2503 2.628178 GGTCAGTAAAGCAAGGCCTTTT 59.372 45.455 17.61 10.92 36.50 2.27
2148 2582 2.997485 CTTGGTCAGTAAAGCAAGGC 57.003 50.000 7.71 0.00 46.17 4.35
2182 2616 5.958380 TCTGCCCCATAATATAAGATCGTCT 59.042 40.000 0.00 0.00 0.00 4.18
2184 2618 5.129485 CCTCTGCCCCATAATATAAGATCGT 59.871 44.000 0.00 0.00 0.00 3.73
2185 2619 5.453903 CCCTCTGCCCCATAATATAAGATCG 60.454 48.000 0.00 0.00 0.00 3.69
2186 2620 5.667626 TCCCTCTGCCCCATAATATAAGATC 59.332 44.000 0.00 0.00 0.00 2.75
2187 2621 5.613826 TCCCTCTGCCCCATAATATAAGAT 58.386 41.667 0.00 0.00 0.00 2.40
2188 2622 5.032846 CTCCCTCTGCCCCATAATATAAGA 58.967 45.833 0.00 0.00 0.00 2.10
2189 2623 4.785376 ACTCCCTCTGCCCCATAATATAAG 59.215 45.833 0.00 0.00 0.00 1.73
2190 2624 4.774779 ACTCCCTCTGCCCCATAATATAA 58.225 43.478 0.00 0.00 0.00 0.98
2191 2625 4.435977 ACTCCCTCTGCCCCATAATATA 57.564 45.455 0.00 0.00 0.00 0.86
2192 2626 3.297994 ACTCCCTCTGCCCCATAATAT 57.702 47.619 0.00 0.00 0.00 1.28
2193 2627 2.815357 ACTCCCTCTGCCCCATAATA 57.185 50.000 0.00 0.00 0.00 0.98
2194 2628 2.089925 ACTACTCCCTCTGCCCCATAAT 60.090 50.000 0.00 0.00 0.00 1.28
2195 2629 1.294068 ACTACTCCCTCTGCCCCATAA 59.706 52.381 0.00 0.00 0.00 1.90
2196 2630 0.941963 ACTACTCCCTCTGCCCCATA 59.058 55.000 0.00 0.00 0.00 2.74
2197 2631 0.044855 AACTACTCCCTCTGCCCCAT 59.955 55.000 0.00 0.00 0.00 4.00
2198 2632 0.714180 TAACTACTCCCTCTGCCCCA 59.286 55.000 0.00 0.00 0.00 4.96
2199 2633 1.875488 TTAACTACTCCCTCTGCCCC 58.125 55.000 0.00 0.00 0.00 5.80
2200 2634 5.071923 ACATAATTAACTACTCCCTCTGCCC 59.928 44.000 0.00 0.00 0.00 5.36
2201 2635 6.176014 ACATAATTAACTACTCCCTCTGCC 57.824 41.667 0.00 0.00 0.00 4.85
2202 2636 6.817184 TGACATAATTAACTACTCCCTCTGC 58.183 40.000 0.00 0.00 0.00 4.26
2224 2658 7.619965 TCTTGGTCTACAACAATGTGATATGA 58.380 34.615 0.00 0.00 40.84 2.15
2279 2748 2.124695 CTAAACAGGAGGCCGGGC 60.125 66.667 22.67 22.67 0.00 6.13
2280 2749 2.124695 GCTAAACAGGAGGCCGGG 60.125 66.667 2.18 0.00 0.00 5.73
2281 2750 1.153349 GAGCTAAACAGGAGGCCGG 60.153 63.158 0.00 0.00 0.00 6.13
2282 2751 0.460987 CAGAGCTAAACAGGAGGCCG 60.461 60.000 0.00 0.00 0.00 6.13
2283 2752 0.746204 GCAGAGCTAAACAGGAGGCC 60.746 60.000 0.00 0.00 0.00 5.19
2309 2787 0.875059 GTCTGGGTTGCTGTGCTTAC 59.125 55.000 0.00 0.00 0.00 2.34
2311 2789 0.395586 TTGTCTGGGTTGCTGTGCTT 60.396 50.000 0.00 0.00 0.00 3.91
2339 2817 2.614057 GTGTCTGGGTTCACAGTTTCAG 59.386 50.000 1.92 0.00 39.48 3.02
2340 2818 2.639065 GTGTCTGGGTTCACAGTTTCA 58.361 47.619 1.92 0.00 39.48 2.69
2348 2826 2.554344 GGCATTTAGGTGTCTGGGTTCA 60.554 50.000 0.00 0.00 0.00 3.18
2349 2827 2.092323 GGCATTTAGGTGTCTGGGTTC 58.908 52.381 0.00 0.00 0.00 3.62
2351 2829 1.072266 TGGCATTTAGGTGTCTGGGT 58.928 50.000 0.00 0.00 0.00 4.51
2352 2830 1.463674 GTGGCATTTAGGTGTCTGGG 58.536 55.000 0.00 0.00 0.00 4.45
2353 2831 1.086696 CGTGGCATTTAGGTGTCTGG 58.913 55.000 0.00 0.00 0.00 3.86
2396 2885 5.773680 CCCATCTCTCCTAATTGATTGCAAT 59.226 40.000 12.83 12.83 46.35 3.56
2420 2909 9.922305 GTATTAGTTGATGTGCAAAGAAGTATC 57.078 33.333 0.00 0.00 38.44 2.24
2421 2910 9.448438 TGTATTAGTTGATGTGCAAAGAAGTAT 57.552 29.630 0.00 0.00 38.44 2.12
2422 2911 8.717821 GTGTATTAGTTGATGTGCAAAGAAGTA 58.282 33.333 0.00 0.00 38.44 2.24
2478 2968 0.400594 GGTAGTGTTGAGTTGGGGCT 59.599 55.000 0.00 0.00 0.00 5.19
2479 2969 0.608308 GGGTAGTGTTGAGTTGGGGC 60.608 60.000 0.00 0.00 0.00 5.80
2488 2978 3.181491 CCTGTTGTTGTTGGGTAGTGTTG 60.181 47.826 0.00 0.00 0.00 3.33
2568 3058 1.380785 ATGGCTGGAATGTGCTGGG 60.381 57.895 0.00 0.00 0.00 4.45
2623 3113 1.297451 GTCGTCGTCGCTTATCGCT 60.297 57.895 0.00 0.00 38.27 4.93
2665 3155 2.046314 GACATGACACCGTGGGGG 60.046 66.667 0.00 0.00 43.62 5.40
2721 3212 0.799393 GAAGAACGGAAGAAGCCAGC 59.201 55.000 0.00 0.00 0.00 4.85
2738 3229 3.092301 AGACACTGATGATCTGACGGAA 58.908 45.455 6.32 0.00 0.00 4.30
2793 3284 2.418368 TGACCCTTGACCATGTATGC 57.582 50.000 0.00 0.00 0.00 3.14
2794 3285 3.133691 CGATGACCCTTGACCATGTATG 58.866 50.000 0.00 0.00 0.00 2.39
2795 3286 3.038280 TCGATGACCCTTGACCATGTAT 58.962 45.455 0.00 0.00 0.00 2.29
2796 3287 2.462723 TCGATGACCCTTGACCATGTA 58.537 47.619 0.00 0.00 0.00 2.29
2905 3396 2.172483 AACGCGATGGAGAAGCTGGT 62.172 55.000 15.93 0.00 0.00 4.00
3072 3563 1.629861 TGCTGAATCACATGTCAGGGA 59.370 47.619 12.65 0.77 41.36 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.