>input_sequence_60719
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-------------------------------------------------------------CCTTAAAGAAAGCAATGCA
GATGGATAAGCAGATGACCGGCCGCCCCGGCGTGAATCCATCCATCTAAAACCCCTGACCCGAAGCTAGCAGAGTGGCCG
GAGGC---ACCATGGGGCTGTGCTCGTCGGTGCTGCGGCGGAGGGCGAGGAACCGGCATCCGGAGCCGAGGCGCGGCACG
CCGACGGCGATGTACGTCGTCAGAGGCGAGGGCGACCGCCGACCGGAGCCGCTGGTGCTCCGGGTGCAGGACTCCGGCCG
AACGCAGCTCCAGAAACCGCCTGCCAATGTGGCGCCCAGAAGGCACGAGAGATGCAGCCGGCAGCAAGGCGCGGACGCGC
CGGACAGGATGGTC---TCCTGCGCTCATGCTCCTCGGCTGGGTACTACCAG------AAGCGCCGCAGGGGTCGAGCCA
AGTGCACAGCCGTCCACGCTCAAGACGACGACGGCGACGGCCGGCCGAGGGAACCCGATGACGCAGGGGCGGTACGGGAC
GCCGTCGACGGCACCACCGACGACAACGGCCTCGCCGCTCATAGTGCCAGGGACGCCGGCGTCAGCGGCGATGACGCCGG
GGCGGCCGGTGTGGCGGAGGAGGATACTGATGGGGATGCGGTGCGAGCTGCCGCGCTTCAGCGGCCTCCTGCTCTACGAC
GAGCACGGCCGGCCGGTGCACATCGCCACCCCGGGCCGAAGGAACCACCGCCAGGTATGAAGACTAAACTTGCCTTTAT-
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------------------TTACAACATATAGTTGCTTGAGTC--ATACGGAGTTCAGATTGATGTACTACGTTTTGACCT
GTTTTTCTCCAGGGGAAGAAGAAGGCTGCCAGTGCCAG------GACACCTTCCACCACAACTCTCAGGGACCTCCAATA
GTTAGTTTGTTTGTTGCGACCAGTTGAGAGAATCTGAAGGAATGCTCTGCTGTAAAACAACAAACACAAGTCATGTGCAT
ATGTGATACTTATATGAAATGGATTCGTTCATCATAAAAGATAACGACCCCAATAACGCCCCGAAAGTTCGGAATCTGAC
CATGGCAAATCAAATGTTCTCGACAGCAATTTTAGCAACGCCAGGCGTGCG-----------------------------
------------------------------TGTCAACTAAACTTCCCATCCTCGCGTCA---------------------
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>chr6B_1_TraesCS6B01G392800
CAAAAACCCTAAGCCCCAATTCCCTTAACCCCC-AATTCCTGACTGAAAACCCTAGAACAATCGGTCCTACCTTGCAACT
AGAACACATCTACGATGGAAATGCGGCCCTAAAAGGAGGTCTTTTGACGATCAAAACACACAAAGAGGCTCGGGTTCCA-
TTGGGGGCGGATACTTACTGTACACAGGGGGTGGCGCCCCTTATGCGTGACGAACAGGGGCCATCCCCGACGCCTCCGAC
GAGAAGAGCATGCCCGGCGGCGGCGCCCGTGCAACCGCTGACGAGCTCCATGCCTCAACTCATAA---------------
----GGGGGCGGCGGCGTCGCCTATGCAGCAGGCGCTCCCCTGTTTCTAATCGAAGATGAAGAGGCGACGTGACTGGAGG
AGGGGTGAATGGATGGATTCCGTTGTGGCCAGAAGGCTAAATGCAAAAGAGCGACGGCGACGCCTCCACGGTTCGCCACC
TGGCCTGGACGACTGGTCAACACGTGGTCAACAGCGCTATACCCACCGTGTACGTGCTACAGTGACCGCATTTTCACGTC
ACATCGTATTCAGTGACCGTATCGAGCGTATTCCTAAGTTCAGTGACCGTATCGTTTCTTCAGTCGCAACTATAGTGACC
ATAAGTGTATTTATCTCTTTAGGTTGTAAATATGGACTTCCCTCTGTGTGAGGAGAAGTCACGGCGCCCCTGCGAAGTCA
AGGAAACGCAAGCCGCCGTACCACTTCCGTGCAAAACGCTACCAAACTTGGGAGTCCATGCAAGAAAGGCGCAAGGAAGG
AATGCAACCGAAGTCGGGAGGACGACGGCGGGTCGATCGGCGGCCGTGAGCGAAACACCGGCCGACTAGGCTACACGCAT
AGGCCGTCACCTAGAGAAGCAACGGGCAATGCTTTGCCTTACTCCGTTGGTGAAGCAACGCAAAAAAAGATGACTAGCAA
CGAAACCTTCCTTTGCTTGGTTTACTTCCCGGCCTGGCTCACTCCACCCGTTTGCTTGCCACCTTAAAGAAAGCAATGCA
GATGGATAAGCAGATGACCGGCCGCCCCGGCGTGAATCCATCCATCTAAAACCCCTGACCCGAAGCTAGCAGAGTGGCCG
GAGGC---ACCATGGGGCTGTGCTCGTCGGTGCTGCGGCGGAGGGCGAGGAACCGGCATCCGGAGCCGAGGCGCGGCACG
CCGACGGCGATGTACGTCGTCAGAGGCGAGGGCGACCGCCGACCGGAGCCGCTGGTGCTCCGGGTGCAGGACTCCGGCCG
AACGCAGCTCCAGAAACCGCCTGCCAATGTGGCGCCCAGAAGGCACGAGAGATGCAGCCGGCAGCAAGGCGCGGACGCGC
CGGACAGGATGGTC---TCCTGCGCTCATGCTCCTCGGCTGGGTACTACCAG------AAGCGCCGCAGGGGTCGAGCCA
AGTGCACAGCCGTCCACGCTCAAGACGACGACGGCGACGGCCGGCCGAGGGAACCCGATGACGCAGGGGCGGTACGGGAC
GCCGTCGACGGCACCACCGACGACAACGGCCTCGCCGCTCATAGTGCCAGGGACGCCGGCGTCAGCGGCGATGACGCCGG
GGCGGCCGGTGTGGCGGAGGAGGATACTGATGGGGATGCGGTGCGAGCTGCCGCGCTTCAGCGGCCTCCTGCTCTACGAC
GAGCACGGCCGGCCGGTGCACATCGCCACCCCGGGCCGAAGGAACCACCGCCAGGTATGAAGACTAAACTTGCCTTTAT-
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------------------TTACAACATATAGTTGCTTGAGTC--ATACGGAGTTCAGATTGATGTACTACGTTTTGACCT
GTTTTTCTCCAGGGGAAGAAGAAGGCTGCCAGTGCCAG------GACACCTTCCACCACAACTCTCAGGGACCTCCAATA
GTTAGTTTGTTTGTTGCGACCAGTTGAGAGAATCTGAAGGAATGCTCTGCTGTAAAACAACAAACACAAGTCATGTGCAT
ATGTGATACTTATATGAAATGGATTCGTTCATCATAAAAGATAACGACCCCAATAACGCCCCGAAAGTTCGGAATCTGAC
CATGGCAAATCAAATGTTCTCGACAGCAATTTTAGCAACGCCAGGCGTGCG-----------------------------
------------------------------TGTCAACTAAACTTCCCATCCTCGCGTCATTAAAATTGCCACTGAAAACG
TTCGATTTACCATGGTTCGGCCA---------------------------------------------------------
-----------------AAAGGCCTTGCTTTACTGACCAAGTTTCTCATGTGATAAGACGATCTTATATTATGGGGCAGA
GGGAGTAGTTAATTATGTCATATCACATTGTTGTAGACCAAGAATTGGTCGTGC--------------------------
---------AGGCAGGTTAAGGTTAAGGCCCG---------GCCTCCTGTTTAGCTCTGCTATGAAGTAAGCACAGCAAC
CCAGACAAGAAGCAAACTGAAACTGTGAACC-----------CAGACACCTAAATGCCACGCTGCCTGACAGCACGCAAT
GCACATTGCAATCAATTAGGAGAGATGGGATACTTCTTTGCACATCAACTAATACACAGGCTGGATAAAAAA-GAAAAAG
GAGAGAGAGCCCCAACTCAACACTACCCAACAACAACAGGCTATATATGATTTCCCGCATGCTTCCTCCACTAGGCTTCT
GTTTCTCTTCAGTCATCCCCAGCACATTCCAGCCATGGAGCCTGTCTAAAATCCCGAACCCGCGACCGGACCAGCGATAA
GCGACGACGACGCCGTTGCACTTCCCTCCCCCCACCCCC-ACGGTGTCATGTCATCGGAGCCCGGCGGGGAGGAGACAGC
CGTCCGCCGCGGCTGGCTTCTTCCGTTCTTCCGTCAGATCATCAGTGTCTATACGCGAGCAACGACACAGTTAGCGAGAG
CTGGCATACATGGTCAAGGGTCATCGATCACTTCCCAAATCTCAAGCACTTGTTGTGTTTCACTTCGCCCATGCTCGACG
GCGGTACCTGGGGCGCCTTTGTCGCTCGCTCCTTCACCAGCTTCTCCATCGCGTTCACGAACTTCCGCAGGTGCCGGATG
TACTCGGGGTACGTCTCCAGGTTGCAGTGGCCGCCGCCTTTCACCCACAGCGGCTCGTACTTCTCCTTCGCTAGCTCCCA
TAGGCGCTTGCCGTGCGAGAAGTCGACGATGTCGTCCGCCGTTCCCTGACATGTGATTCAGCAGGTCCAG-
>chr6B_1
CAAAAACTCTAAGCCCCAATTCCCTTAACCCCC-AATTCCTGACTGAAAACCCTAGAACAATCGGTCCTACCTTGCAACT
AGAACACATCTATGATGGAAATGCGGCCCTAAAAGGGGGTCTTTTGACGATGAAAATGCACAAACAGGCTCGGGTTCAAT
T-GGGGGCGGATACTTACTGTAAACA-GGGGTGGCGCCCCTTCTGCGCGACAAACAGGGGCCATCCCCGACGCCTCCAAC
GAGAAGAGCACGCGCGGCGGCGCTGCCCGTGCAACCGCTAACGAGCTCCACGCCTCAACTCGCCTGCACC-TTGACGATC
GCCGGGGGGCGGCGGTGTCGCCTATGCAGCAGCCGCTCCCATGTTTCTAATCGAAGACGAAGAGGCGACGTGACTGGAAG
AGGGGTGAATGGGTGGATTCCGTTGCGGCTAGAGGGCTAAATGCAAAAGAGCGACGGCGACGCCTCCGCGGTTCGCCACC
TGGCCTGGACGACTGGTCAACACGTGGTCAACAACGCTGTACCCACCGTGTACGTGCTACAGTGACCATATTTTCACATC
ACATCGTATTTAGTGACCATATCGAGCGTATTCCTAAGTTCAGGGACCGTACCATG-CTTCAGTCGCAACTAGAGTGACC
ATGAGTGTATTTATCTCTTAGG----------------------------------------------------------
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>chr4B_1
CAAAAACCCTAAGCCCCAATTCCCTTAACCCCC-AATTCCTGACTGAAAACCCTAGAACAATCGGTCCTACCTTGCAACT
AGAACACATCTACGATGGAAATGCGGCCCTAAAAGGAGGTCTTTTGACGATCAAAACGCACAAAGAGGCTCGGGTTCCA-
T-GGGGGCGGATACTTACTGTACACAGGGGGTGGCGCCCCTTCTGCGCGAC-AAAAGGGGCCATCCCCGACGCTTTCGAC
GAGAAGAACACGCGCGGCGGCGCCGCCCGTGCAACCGCTGACGAGCTCCACGCCTCAACTCGCCTGCACCGTCGACGATC
GCC-GGGGGCGGCGGCGGCGCCTATGCAGCAGCCGCCCCCTTGTTTTTAATCGAAGACGAAGAGGCAACGTGACTGGAGG
AGGGGTGAATGGGTGGATTCCATTGTGGCCGGGGGGCTAAATGCAAAAGAGCGACGGTGACGCCTCCGCGGTTTGCCACC
TGGCCTGGACAACTGGTCAACACGTGGTCAACAGCGTTGTACCCACCGTGTACGTGCTACAGTGACTGTATTTTCACATC
ATATTGTATTCAGTGACCGTATCGAGCGTATTCCTAAGTTCAGTGACCGTATCGTG-CTTCAGTCGCAACTATAGTGACC
ATGAGTGTATTTATCTC---------------------------------------------------------------
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>chr2D_1
CAAAAACCCAAAGCCCCAATTCCCTTAACCCCC-AATTCCTGATTGAAAACCCTAGAACACTCGGTCCTACCTAGCAACT
AGAACACATCTAAGATGGCAATGCGGCCCTAAAAGGAGGTCTTTTGACGATCAAAACGCACAAAAAGGCTCGGGTTCCA-
T-GGGGGCGGAAACTTACTGTACAGAGGGGGTGGCGCCCCTTCCGCGCGATGAACAGGGGCCATCCCCGACGCCTCCGAC
GAGAAGAACACGCGCGGCGGCGCCGCCCGTGCAAGCGCTGACGAGCTCTACGCCTCAGCTCGCCTGCACCGTCAATGATC
GTC-GGGGGCGGCGGCGTCGCCTACGCAGCAGCCGCTCCCCTGTTTCTAATCGAAGACGAAGAGGCAACGTGACTGGAGG
AGGGGTGAATGGGTGGATTTCGCGGTGGCCAAGGGGCTAAATGCAAAAGAGCGACGGCGACGCCTCCACGGTTCGCCACC
TGGCCTGGACGACCGGTCAACACGTGGTCAACAGCGCTGTACCCACCGTGCACGTGCTACAGTGACCGTATTTTCACGTC
ACATCGTCTTGAGTGACCGTATCGAGCGTATTTCTAAGTTCAGTGACCGTATCGTG-CTTCGGTCGCAACTATAATGACC
ATGAGTGTATTTATCTCTT-------------------------------------------------------------
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>chr2D_1
CAAAAACCAAAAGCCCCAATTCCCTTAACCCCC-AATTCCTGACTGAAAACCCTAGAACACTCGGTCCTACCTAGCAACT
AGAACACATCTAAGATGGCAATGCGGCCCTAAAAGGAGGTCTTTTGACGATCAAAACGCACAAAAAGGCTCGGGTT--A-
T-GGGGGCGGAAACTTACTGTACAGAGGGGGTGGCGCCCCTTCCGCGCGACGAACAGGGGCCATCCCCGATGCCTCCGAC
GAGAAGAACACGCGCGGCGGCGTCGCCTGTGCAAGCACTGACGAGCTCCATGCCTCAGCTCGCCTGCACCGTCGACGATC
GTC-GGGGGCGGCGGCGTCGCCTATGCAGCAGCCGCTCCCCTCTTTCTAATCGAAGACGAAGAGGCGACGTGACTGGAGG
AGGGGTGAATGGGTGGATTTCGCGGTTGCCAGGGGGCTAAATGCAAAAGAGCGACGGCGACGCCTCCACGGTTCGCCACC
TGGCCTGGACGACCGGTCAAAACGTGGTCAACAGCGCTGTACCCACTGTGTACCTGCTATAGTGACCGTATTTTCACGTC
ACATCGTCTTCAGTGACCGTATCGAGCGTATTTCTAAGTTCAGTGACCGTATCGTG-CTTCGGTCAGAACTATAATGACC
ATGAGTGTATTTATCTCT--------------------------------------------------------------
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>chr2D_1
CAAAAACCCTAAGCCCCAATTCCCTTAACCCCC-AATTCCTGACTGAAACCCCTAGACCAATCGGTCCTACCTTGCAACT
AGAACACATCTAAGATGACAATGCGGCCTTAAAAGGAGGTCTTTTGACGATCAAAACGCACAAAAAGGCTCGGGTTCCA-
T-GGGGGCGGAAACTTACTGTGTAGAGGGGGTGGCGCCCCTTCCGCACGACGAACAGGGGCCATCCCCGACGCCTCCGAC
GAGAAGAACACACGCGGCGGCGCCGCCCGTGCAACCGCTGACGAGCTCCACGCCTCAGCTCGCCTGCACTGTCGACGATC
GTC-GGGGGTGGCGGCATCGCCTATGCAGAAGCCGCTCCCCTGTTTCTAATCGAAGACGAAGAGGCGACGTGACTGGAGG
AGGGGTGAATGGGTGGATTCCGCGGTGGCCAGGGGGCTAAATGCAAAAGAGCGACGACGACACCTCCACGTTTCGCCACC
TGGCCTGGACAACCGGTCAACATGTGGTCAACAACGCTGTACCCACCGTGTACGTGCTACAGTGACCGTATTTTCACGTC
ACATCGTATTGAGTGACCATATCGAGCATATTCCTAAGTTCAGTGACCGTATCGTG-CTTCGATCGCAACTATAATGACC
ATGAATGTATTTATCTC---------------------------------------------------------------
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>chr5D_1
CAAAAACCCTTAGCCCCTATTCCCTTAACCCCCCAATTCCTGACTGAAAACCCTAGAACACTCGGTCCTACCTAGCAACT
AGAACACATCTAAGATGGCAATGCGGCCCTAAAAGGAGGTCTTTTGACGATCAAAACGCACAAAAAGGCTCGGGTTCCA-
T-GGGGGCGGAAACTTACTGTACAGAGGGGGTGGCGCCCCTTCCGCGCGACGAACATGGGCCATCCCCGATGCCTCCAGC
GAGAAGAACACGCGCGGCGGCGCCGCCTGTGCAAGCGCTGACGAGCTCCACGCCTCAGCTCGCCTGCACCGTCGGG----
----------GGCGGCGTCGCCTATGCAGCAGCCGCTCCCCTGTTTCTAATCGAAGACGAAGAGGCGACGTGACTGGAGG
AGGGGTGAATGGGTGGATTTCACGGTGGCCA-GGGGCTAAATGCAAAAGAGCAACGACGACGCCTCCACGGTTCGCCACC
TGGCCTGGACGACCGGTCAACACGTGGTCAACAGCGCTGTACCCACCGTGTACGTGCTACAGTGACTGTATTTTCACGTC
ACATCGTATTGAATGACCGTATCGAGCGTATTTCTAAGTTCAGTGACCGTATCGTG-CTTCGGTCGCAACTATAATAACC
ATGAGCGTATTTATCTC---------------------------------------------------------------
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>chr4A_1
CAAAAACCCTAAGCCCCAATTCCCTTAACCCCC-AATTCCTGACTGAAAACCCTAGAACAATCAGTCCTACCTAGCAACT
AGAACACATCTAGGATGGCAATGCGGCCATAAAAGGGGGTCTTTTATCGATCAAAACGCACAAATAGACTCGGGTTCAAT
T-GGGGGCAGAAACTTACTGTAAACAGGGGGTGGCGCCCCTTCTGCGTGACGAACAGGGGCCATCCCCGACGCCTCCGAC
GAGAAGAGCACGCGCGGCGGCGCCGCCCGTGGAACCGCTGACGAGCTCCACGCCTCAACTCGCCTGCACCGTCGACGATC
GTC-GGGGGCGGCGGCGTCGCCTATGCAGCAGCCGCTCCTCTGTTTCTGATCGAAGACGAAGAGGCGACGTGACTGGAGG
AGGGGTGAATGGGTGGG-TCCGTTGTGACCA-GGGGGTAAATGCAAAAGAGCGACGGCGATGCCTCCGCGGTTCGCCACG
TGGCCTGGACGAGTAGTCAACACGTGGTCAACAGCGTTGTACCCACCGTGTACGTGCTACAGTGACCGTATTTTCACGTC
ACATCGTATTCAGTGACCGTATCGAGCGTATTCCTGAGTTCAGTGACCGTATCGTG-CTTCAATCGCAACTAGAGTGACC
GTGAGTGTATTTATCTCTT-------------------------------------------------------------
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>chr7B_1
CAAAAACCCTAAGCCCCAATTCCCTTAACCCTC-AATTCCTGACTGAAAACCCTAGAAGAATCAGTCCTACCTTGCAACT
AGAACACATCTAGGATGGAAATGCGACCCTAAAAGGGGGTCTTTTGACGATCAAAACACACAAATAGGCTCGGGTTCAAT
T-GGGGGCGGAAACTTAGTGTAAACA-TGGGTGGCGCCCCTTCTGCGCGACGAACAGGGGCCATCCCTGACGCCTCCGAC
GAGAAGAGCATGCGCGGCGGCGCCGCCCGTGCAACCGCCGACGAGCTCCACGCCTCAACTCGCCTGCACCGTCGACGTTC
GCC-GGGGGCGGCGACGTCGCCTATGCAGCAGCCGCTCCCCTGTTTCTAATCGAAGATGAAGAGACGACGTGACTGGAGG
AGGGGTGAATGGGGGGATTCCGTTGCGACCAGGGGGGTAAATGCAAAAGAGCGACGACGACGCCTCCGCGGTTTGCCATG
TGGCCTGGACGACTGGTCAACACATGGTCAACAGCGCTGTACCCACCGTGTACGTGCTACAGTGACCATATTTTCACGTC
ACATCGTATTCAGTGACCGCATCGAGCGTATTCCTGAGTTTAGTGACCGTATCGTG-CTTCAGTCGCAACTAGAGTGACC
GTGGGTGTATTTATCTCT--------------------------------------------------------------
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>chr3B_1
CAAAAACCCTAAGCCCCAATTCCCTTAACCCCC-AATTCCTGACTCAAAACCCTAGAACAATCGGTCCTACCTTGCAACT
AGAACACATCTACGATGGAAATGCGGCCCTAAAAGGAGGTCTTTTGACGATCAAAATGCACAAATAGGCTCGGGTTCCAT
T-GGGGGCGGATACTTACTGTTCACA-GGGGTGGCGCCCCTTCTATGCGACGAACATGGGCCATCCCCGACGCCTCCGAT
GAGAAGAGCACGCGCGGCGGCGCCGCCCGTGCAACCGCTGACGAGCTCCACGTCTCAACTCGCCTGCACCGTTGACGATA
GCC-GGGGGTGGCGGCGTCGCCTATGCAGCAACCACTACCCTATTTCTAATCGAATACGAAGAGGCGACATGACTAGAGG
AGGGGTGAATGGGTGGATTCCGTTGTGGCCAAGGGGCTAAATGCAAAAGAGCGATGGCGACGCCTCCGCGGTTCGCCACC
TAGCCTGACCGACTGGTCAACACGTGGTCAACAATGCTGTACCCACAGTGTATGTGCTACAGTGACCGTATTTTCATGTC
ACATCATATTCAGTGACCATATCGAGCGTATTCCTAAGTTCAATGGCCGTATCGTG-CTTCAGTCGCAACTATAGTGACC
ATGAGTGTATTTATCTC---------------------------------------------------------------
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>chr3B_1
CAAAAACCCTAAGCCCCAATTCCCTTAACCCCC-AATTCCTGACTGAAAACCCTAGAACAATCGGTCCTACCTTGCAACT
AAAACACATCTACGATGGAAATGCGGCCCTAAAAGGAGGTCTTTTGACGATCAAAATGCACAAAGAGGCTCGGGTTCCAT
G-GGGGGCGGATACTTACTATACACAGGGGGTGGCGCCCCTTCTACGCGACAGACAGGGGCCATCCCCGATGCCTCCGAC
GAGAAGAACACGCGCAGCGGTGCCACCCATGCAACCGCTAACAAGCTCCACGCCTCAACTCGCCTGCACCGTCGATGATC
GCC-GGGGGCGGTGGCGGCGCCTATGCAGCAGCCGCTCCCCTGTTTCTAATCAAAGACGAAGAGGCGACGTGACTGGAGG
AGGGGTGAGTGGGTGGATTCCATTGTGGCCAGGGG-CTAAATGCAAAAGAGCGACAGCGATGCCTCCGCGGTTCGCCACC
TGGCCTGGACGACTGGTCAACACATGGTCAACAACGTTGTACCCACCATGTACGTGCTACAGTGACTGTATTTTCACATC
ACATTGTATTCAATGGCCGTATCGAGCGTATT---AAGTTCAGTGACCGTATCGTG-CTTTAGTCGCAACTATAGTGACC
ATGAGTGTATTTATCTC---------------------------------------------------------------
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>chr1B_1
CAAAAACCCTAAGCCCCAATTCCCTTAACCCCC-AATTCCTGACTAAAAACCCTAGAACAATCAGTCCTACCTAGCAACT
AGAACACATCTAGGATGGAAATGCGGCCATAAAAGGGGGTATTTTGGCGATCAAAATGCACAAATAGACTCGGGTTCAAT
T-GGGGGCGGAAACTTACTGTAAACAGGGGGTGGCGCCCCTTCTGCACGACGAACAGGGGCCATCACCGACGCCTCCGAT
GAGAAGAGCACGCGCGGCGGCGCCGCCAGTGGAACCGCTGACGAGCTCCATGCCTCAACTCGCCTGCACCGTCGACGATC
GCC-GGGGGCGGCAGCGTCGCCAATGCAGCAGCCGCTCCCTTGTTTCTAATCGAAGACGAAGAGGCGACGTGACTGGAGG
AGGGGTGAATGGGTGGATTCCATTGCGACCA-AGGGGTAAATGCAAAAGAGCGACGGCGACGCCTCCGCGGTTCACCACG
TGGCCTGGACGACTGGTCAACACGTGGTCAACAGCGCTGTACCCACCGTGTACGTGCTACAGTGACCGTATTTTCACGTC
ACATCATATTCAGTGACCGTATCGAGCGTATTCCTGAGGTCAGTGACCGTATCGTG-CTTTAATTGCAACTAGAATGACC
GTGAGTGTATTTATCTC---------------------------------------------------------------
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>chr3D_1
CAAAAACCCTAAGCCCCAATTCCCTTAACCCCC-AATTCCTGACTGAAAACCCTAGAACAATCAGTCCTACCTTGCAACT
GGAACACATCTAAGATGGAAATGCGGCCCTAAAAGGAGGTCTTTTAATGATCAAAACACACAAAGAGGCTCGGGTTCCAT
G-GGGGGCGGATACTTACTGTACACAGGGGGTGGCGCCCCTTCCGCGCGACGAACAGGGGCCATCCCCGACGCCTCCAAC
GAGAAGAACACGCGCGGCAGCGCCGCCCGTGCAACCGCTGACGAGCTACACGCCTCAACTCGCCTGCACCGTCGTCGATG
GTC-GGGGGCGGCGGTGTCGCCAATGCAGCAGCCGCTCCCCTGTTTCTAATCGAAGACGAAGAGGCGACATGATTGGAGG
AGGGGTGAATGGGTGGATTCCATTGTGGCCAGGGGACTAAATGGAAAAGAGTGACGACGACGCCTCCGCGGTTCGCCACC
TGGCCTGGACGACCGGTCAACACATGGTCAATAGCGCTGTACCCACCGAGTACGTGCTACAATGGCTGTATTTTCACGTC
ACATCGTATTGAGTGACCGTATCGAGCGTATTCCTAAGTTCAGTGACTGTATCGTG-CTTCGGTCGCAATATAG------
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>chr6D_922
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--------------------------------------------------------------AAAGAAGAAGATTACCGA
CGAAATCTCCCTTCCTTTCTCTTACTTCCCAGCCTGGCTCACTCCACCCGC-----TGCCACCTTAAAGAAACCAACCAA
TGCAGATTATCCATCGAGCTCGAGCAAGCACCC--ATCCATCCGTCTAAAACCCCTGATCCGAAGAC--AAAAGATACTA
TCAGAGTAACCATGGGGCTGTGCGCGTCGATGCTGCGACGGAGGGCCAAGCAGCGGCACCCGGAGCCGAGGCGCGGCACG
CCGACGGCGCTGTTCGTCGTCAGAGGCGAGGGCGACCGCCGGCCGGAGCCTCTGGTGCTCCGTGTGCAGGACTCCGGCCG
ACCGCAGCTCCAGAAACCACCTGCCAACGTGGCATCCAGGAGGCACGAGAGATGCAGCCGGCAGCAAGGCGCGGACGCGC
CGGACAGGATGGTCGTCTCCTGCGCTCAGCCTCCTCGGTTGGGTACTGCCAG------AAGCACCGCCGGTGTCGAGCCA
GGTGCGACGCCGCCCACGCGCAA---GACGGCGACGCCAGCCGGCCGAGGGGCCCCCATGACGCCGGGGCGGTACGGGAC
GCCGTCGACGGCACCACCAACGACAACGGCGTCGCCGCTCATAGTGCCGGGGACGCCGGCGTCGACGGCGATGACGCCGG
GGCGGCCGGTGTGGCAGAGGAGGATACTGATGGGGATGCGGTGCGAGCTGCCGCGGTTCAGCGGCCTCCTGCTCTACGAC
GAGCACGGCCGGCCGATGCACCTCGCCACCCCGGGCCGAAGGAACCACCGCCAGGTATGCAGGCACAGTAAGCTTATCTG
GACAACGTATACAGTAC---------------------------------------------------------------
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-------------------------------TTGCTTGTGAACAACACGGGGTTCAGATTAATGTACTGCGTTTTGACCT
GTTTTCCTCCAGGGGAAGAAGAAGACTGCCAGTGCCAGTGCCAGGACACCTTCCACCACAACCCTCAGGGACCTCCTATA
GTTA----GTTAGTTGGGACCAGTTGACAGAGGCGGAAGGAATACTCTGCTGTAAAACAGCAAACACAAGTCATGTGAAT
ATGTGATA----TATGAAATGGATTCGTTGTACATGAAAGACATGGACCCTG----------------------------
------AAATCGAACGCTTGTCATTGCAATTTTAATGACGCGAGGATGGCAAAGTTGACGCGCATGGCAAATCTGTGCTT
AGTGTATCTTTTGCCAGAAAATTGCCACGCTGTCAATTAAACTTGCCATTCTCGTGTCATTAAAATTGCCATCGAAAACG
TTTGATTTGCTATGGTCAAATCCCGAACTAAATTTGCCATAAAAAATATTCGATTTGCTATGGTCAAATCCCAAACGTTC
GGGGTTTATCATTCCCGAAAGACATTGCTTTACTGACCAAGCTTCTCATGTGATATG-----------------------
-------GTTAATTATGCCATATCACACTGTTGTAGACCAAGAATTTGTCGTGC--------------------------
---------AGGCAGGTTAAGGTTAAGTAGTTTAAGCCTCTGCCTCCTGTTTGGCTCTGCTATGAACTGAGCACAGCAAC
CCAGACAAGAAGCAAAACGAAACTGAAACTGAAACTATGAAGCAGACACCCAAATGCCACACTGCCTGACAGCACACGAA
GCACTTTGCAATCAATTAGGAGAGATGGAC-ACTTCTTTGCACATCAACTAATACACAGGCTGAATAAAAAA-GAAAAAG
GAGAGAG--CCCCAACTGAACACTACCCAACAACAACAGGCTATATATGATTTCCCGCATGCTTCCTCCACTAGGCTTCT
GTTTCTCTTCAGTCATCTCCAGCACATTCCAGCCATGGAGCCTGTCTAA--CCCTGAACCCGCGACCGGACCGGCGATAA
GCGACGACGACGCCGTTGCACTTCCCCCCA-----CCCC-ATGGTGTCATGTCATCGGAGCCCGACGGGGAGACC---GC
CGTCCGCCGCGACTGGCTTCTTCGGCTCCTCCGTCAGATCATCAGTGTCTATACGCGAGCAACGACACAGTTAGCGAGAG
CTG----GCATGGTCAAGGGTCATCGATCACTTCCCAAATCTCAAGCACTTGTTGTGTTTCACTTCGCCCATGCTCGACG
GCGGTACCTGGGGCGCCTTTGTCGCTCGCTCCCTCGCCAGCTTCTCCATCGCGTTCACGAACTTCCGCAGGTGCCGGATG
TACTCGGGGTACGTCTCCAGGTTGCAGTGGCCGCCGCCTTTGACCCACAGCGGCTCGTACTTCTCCTTCGCTAGCTCCCA
TAGGCGCTTGCCATGCGAGAAGTCGACGATGTCGTCCGCCGTGCCCTGACATGTGATTCACCAAGTCCAG-
>chr6A_922
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--------------------------------------------------------------AAAGAAGAGGATTACCGG
CGAAATCTTCCTTCCTTTCTCTTACTTCCCGGCCTGGCTCACTCCACCCGC-----TGCCACCTTAAAGAAACCAACCGA
TGCAGATTATCCATCCAGC------AAGCACCG--ATCCGTCCGTCTAAAACCCCTGATCCAAAGACAAAAAAGATACTA
TCGGAGTAACCATGGGGCTGTGCGCGTCGATGCTGCGACGGAGGGCCAAGCAGCGGCACCCGGAGCCGAGGCGCGGCACG
CCGACGGCGCTGTTCGTCGTCAGGGGCGAGGGCGACCGCCGGCCGGAGGCGCTCGTGCTCCGGGTGCAGGACTCCGGCCG
ACCGCAGCTCCAGAAACCACCTGCTAATGTGGCACCCAGAAGGCAGGAGAGATGCAGCCGGCAGCAAGCCGCGGACGCGC
CGGACAGGACGGTCCGTGCTCAGGCTCAGCCTCCTCGGTTGGTTAGTGCCAGTACCAGAAGCACCGCCGGGATCGAGCCG
GGTGCGCCGCTGTCCACGCGCAA------GACGGCGACGGCCGGCCGAGGGGACCCGGTGATGCAGGGGCGGTACGGGAC
GCCGTCGATGGCACCACCGACGACAACGGCCTCGCCGCTGATAGTGCCCGGGACGCCGGCGTCGGCGGCGATGACGCCGG
GGCGGCCGGTGTGGCAGAGGAGGATACTGATGGGGATGCGGTGCGAGCTGCCGCGGTTCAGCGGCCTCCTGCTCTACGAC
GAGCACGGCCGGCCGATGCACATCGCCACCGCGGGCCGAAGGAACCACCGCCAGGTATGCAGGTATGCAGAGTACTCCCT
CCGTCCGCAAATAAATATACTTCTAGCTTTTGTCTTAAGTCAAAATTTTAAAACTTTGACCAACTTCATAAAAAAAAGTA
GCAACATTTATGGTCTTAAATTAGCATCCCTAGATCCGTTTTGAATTATACTTTCATAATATATAAATTTGATGTCATAT
ATATTACTACTTTTTTGTATATAGTTGGTCAAAATTTTAAAACTTTGACTTAGAATAGAAGTTAGAAGTACACTTATTTG
CGGACGGAGGGAGTAGGCTTACAATATATGGTTGCTTCTGAACAATACAGAGTTCAGATTGATGTGCTCCGTTTTGACCT
GTTTTTCTCCAGGGGAAGAAGAAGACTGCCAC------TGCCAGGACACCTTCCACGACAACTCTCAGGGACCTCCTATA
GTTAGTTTGTTTGTTGCGACCAGTTGACAGAGGCTGAAGGAATACTCTGCTGTAAAACAGCAAACACAAGTCATGTGAAT
ATGTGATACTTATATGAAATGGATTCGCTGTTCATAGAAGACAT------------------------------------
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------------------------TTGTTTTACTGACCAAGCTTCTCATGTGACATG-----------------------
-------GTTAATTATGCCATGTCACATTGTCCTAGACCAAGAATTGGTCGTGCTGTTATTCTAGAAAAAAATAAAGAAT
TGGTCGTGAAGGCAGGTTAAGGTTAAGTTTAAGCCCCTGCCTCCTCCTGTTTGGCTCTGCTATGAACTGAGCACAGCAAC
CCAGACAAGAAGCAGAA------TGAAACTGAAACTATGAAGCAGACACCTAAATGCCAC--TGCCTGACAGCACACAAT
GCAC-TTGCAATCAATTAGGAGTGATGGAC-ACTTCTTTGCACATCAACTAATACACAGGCTGAATAAAAAAAGAAAAAG
GAGAGAG--CCCCAACTGAACACTACCCAACAACAACAGGCTATATATGATTTCCCGCATGCTTCCTCCACTAGGCTTCT
GTTTCTCTTCAGTCATCTCCAGCACATTCCAGCCATGGAGCCTGTCTAA--TCCCGAACCC-CGACCGGACCGGCGATAA
G---CGACGACGCCGTTGCACTTCCCCCCA-----CCCCCACGGTGTCATGTCATCGGAGCCCGACGGGGAGACCA----
---CCGCCGCGACTGGCTTCTTCCGTTCCTCCATCAGATCATCAGTGTCTATACGCGAGCAACGACACAGTTAGCGAGAG
ATG----ACATGGTCAAGGATCATCGATCACTTCCCAAATCTCAAGCACTTGTTGTGTTTCACTTCGCCCATGCTCGACG
GCGGTACCTGCGGCGCCTTTGTCGCTCGCTCCTTCGCCAGCTTCTCCATCGCGTTCACGAACTTCCGCAGGTGCCGGATG
TACTCGGGGTACGTCTCCAGGTTGCAGTGGCCACCACCTTTGACCCACAGCGGCTCGTACTTCTCCTTCGCTAGCTCCCA
TAGGCGCTTGCCGTGCGAGAAGTCAACGATGTCGTCCGCCGTGCCCTGAAATGTGATTCAGCAAAGTCCAG
>SNPs
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-S----------------------------------------S-------------------------------------
-------------S--------S--------------------------------------SSSS---------------
--------------------------------S-----------------------------------------------
------------S--------------------S----------------------------------------------
--------------------------------------S-----------------------------S-----------
-------------------------------------------------------SS-----------------------
--S----------------SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----S--S--S-S-
-----S-------SSS--SSS-----------------------------SSSSSS----------------S---SSS-
SSSS---S-S-SSSS--S-SSSS--SSSSS-SSSS--------S--------------S------SS-SS-S--SSS-SS
SS--S------------------S-----S-------S--------S-S-S-S-----S---------------------
---------S---S---------------------------S--------------------------------------
-S----------------S--------------S----------------------------------------------
----------------------------SS--------S--------S--------------S----S------------
S----S-S-----------S---SSS-------------------------S----------------------------
------------------------------------------------S--------------S----------------
---------------S---------------------------------------S------------------------
---------------S-------------------------------------------S--S-SS-SSSS--S---S--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S----S--------S-SS--------------------------S-----------
------------------------S---------------------------------------------------S---
---------------------------S---SS----------S---------------S-----------------S--
-----------------------------SS----------S-SS-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS-----S--S-S-SSSS-SS---------SSS----S---SSS--S-----------------------------
------------------------------------S-------S----S----S----------------SS-------
--S-----S-S-----SSSSS-S---------------------------------------------------------
---------------------S-S-----------------S-------------S-SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS----------S--------------------------------------------------------------
---------------------------SSSSS--------------------S-------------S-S-----------
----------------SS-------SS-SSS-----------------------------S--------------S----
----S-----------------------SSS--------------------------------S----------------
-------SS--------S--------------------------------------------------------------
-----------------S-------------------------------SS---------------------S-------
--------------------------S--SSSSSS-----------------------------S-------SSS-SS--
-----------S----------------S---------------------------------------------------
---SSSS-------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
-----------------------------------------S--------------------------------------
------------------------------------------S--------------------S-------
>forward_885
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-----------------------------------------------------------------CTAGGCTACACGCAT
AGGCC---------------------------------------------------------------------------
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>reverse_2631
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----------------------------------------------------------------------ATGGGGCAGA
GGGAGTAGTT----------------------------------------------------------------------
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-----------------------------------------------------------------------
