Multiple sequence alignment - TraesCS6B01G385300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G385300 chr6B 100.000 2351 0 0 1 2351 660253312 660250962 0.000000e+00 4342.0
1 TraesCS6B01G385300 chr6B 97.753 178 3 1 2175 2351 27072593 27072770 2.940000e-79 305.0
2 TraesCS6B01G385300 chr6A 91.766 1178 72 14 503 1668 584955491 584954327 0.000000e+00 1615.0
3 TraesCS6B01G385300 chr6A 90.873 252 23 0 1669 1920 584954010 584953759 2.890000e-89 339.0
4 TraesCS6B01G385300 chr6A 90.598 234 13 3 1949 2174 584953768 584953536 3.800000e-78 302.0
5 TraesCS6B01G385300 chr6D 91.731 1173 69 13 503 1667 436763445 436762293 0.000000e+00 1604.0
6 TraesCS6B01G385300 chr5B 88.608 632 37 17 1 601 276158962 276159589 0.000000e+00 736.0
7 TraesCS6B01G385300 chr5B 96.629 178 5 1 2175 2351 358631322 358631499 6.350000e-76 294.0
8 TraesCS6B01G385300 chr5B 96.067 178 6 1 2175 2351 225539552 225539729 2.960000e-74 289.0
9 TraesCS6B01G385300 chr5B 94.944 178 8 1 2175 2351 493657941 493657764 6.400000e-71 278.0
10 TraesCS6B01G385300 chr7B 96.629 178 5 1 2175 2351 681229367 681229544 6.350000e-76 294.0
11 TraesCS6B01G385300 chr7B 96.067 178 6 1 2175 2351 714325814 714325637 2.960000e-74 289.0
12 TraesCS6B01G385300 chr7B 95.506 178 7 1 2175 2351 648055113 648055290 1.380000e-72 283.0
13 TraesCS6B01G385300 chr7B 94.944 178 8 1 2175 2351 648049945 648050122 6.400000e-71 278.0
14 TraesCS6B01G385300 chr4A 93.370 181 11 1 2172 2351 157328965 157329145 1.390000e-67 267.0
15 TraesCS6B01G385300 chr2A 83.616 177 23 5 111 285 764902643 764902815 6.720000e-36 161.0
16 TraesCS6B01G385300 chr5A 75.980 204 25 12 111 293 90931230 90931430 1.500000e-12 84.2
17 TraesCS6B01G385300 chr5D 76.433 157 30 4 125 280 281539461 281539611 6.970000e-11 78.7
18 TraesCS6B01G385300 chr3B 87.755 49 6 0 243 291 394939190 394939142 9.080000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G385300 chr6B 660250962 660253312 2350 True 4342 4342 100.000 1 2351 1 chr6B.!!$R1 2350
1 TraesCS6B01G385300 chr6A 584953536 584955491 1955 True 752 1615 91.079 503 2174 3 chr6A.!!$R1 1671
2 TraesCS6B01G385300 chr6D 436762293 436763445 1152 True 1604 1604 91.731 503 1667 1 chr6D.!!$R1 1164
3 TraesCS6B01G385300 chr5B 276158962 276159589 627 False 736 736 88.608 1 601 1 chr5B.!!$F2 600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
615 654 0.109723 ACCCATTAACGTGCACCAGT 59.89 50.0 12.15 0.63 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2294 2675 0.396435 TGCTTGATCTCCAACGGTGT 59.604 50.0 0.0 0.0 0.0 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 8.537729 CTTGCAAAGTTTCATTTTGAAATGAC 57.462 30.769 16.43 8.76 46.55 3.06
83 84 8.928844 CATTTTGAAATGACATTCAGAAAAGC 57.071 30.769 10.22 0.00 46.72 3.51
121 154 5.565592 AAAATCAGCACAGCATCGATTTA 57.434 34.783 0.00 0.00 35.10 1.40
124 157 6.866010 AATCAGCACAGCATCGATTTATTA 57.134 33.333 0.00 0.00 0.00 0.98
127 160 7.263100 TCAGCACAGCATCGATTTATTATTT 57.737 32.000 0.00 0.00 0.00 1.40
128 161 7.706159 TCAGCACAGCATCGATTTATTATTTT 58.294 30.769 0.00 0.00 0.00 1.82
129 162 8.190122 TCAGCACAGCATCGATTTATTATTTTT 58.810 29.630 0.00 0.00 0.00 1.94
157 190 6.096705 TGCCACGATTTCCATAAATCTGATTT 59.903 34.615 18.64 18.64 45.92 2.17
266 303 1.938577 CTGTCCATCCGAGCTCATTTG 59.061 52.381 15.40 7.14 0.00 2.32
302 339 0.326264 AGTCATGTCCCCAACTCTGC 59.674 55.000 0.00 0.00 0.00 4.26
310 347 0.608640 CCCCAACTCTGCGACTACTT 59.391 55.000 0.00 0.00 0.00 2.24
314 351 3.555168 CCCAACTCTGCGACTACTTTCTT 60.555 47.826 0.00 0.00 0.00 2.52
318 355 3.004524 ACTCTGCGACTACTTTCTTCGTT 59.995 43.478 0.00 0.00 35.17 3.85
326 363 6.508088 GCGACTACTTTCTTCGTTCCATAATG 60.508 42.308 0.00 0.00 35.17 1.90
338 375 6.823531 TCGTTCCATAATGTAAGACGTTTTG 58.176 36.000 0.83 0.00 0.00 2.44
340 377 6.518395 CGTTCCATAATGTAAGACGTTTTGTG 59.482 38.462 0.83 0.00 28.31 3.33
357 394 3.530265 TGTGGCATTACGGTACTTAGG 57.470 47.619 0.00 0.00 0.00 2.69
360 397 1.541889 GGCATTACGGTACTTAGGCCC 60.542 57.143 0.00 0.00 31.52 5.80
373 410 0.326238 TAGGCCCTGTTCGGAATCCT 60.326 55.000 0.00 0.00 33.44 3.24
379 416 1.406069 CCTGTTCGGAATCCTCACTGG 60.406 57.143 0.00 3.69 33.16 4.00
385 422 1.522580 GAATCCTCACTGGCTCCGC 60.523 63.158 0.00 0.00 35.26 5.54
417 455 0.398318 GCTGAGGACCAGGAAACAGT 59.602 55.000 0.00 0.00 43.13 3.55
472 510 2.997897 GGAGCGGACCTGTGGAGT 60.998 66.667 0.00 0.00 0.00 3.85
529 568 4.707030 TTGCAGGTAAATTCATGAGCTG 57.293 40.909 0.00 6.26 40.76 4.24
532 571 3.944015 GCAGGTAAATTCATGAGCTGACT 59.056 43.478 13.08 0.00 40.36 3.41
560 599 5.962031 ACACCTGTCCATAGTAACCTATTGA 59.038 40.000 0.00 0.00 31.29 2.57
609 648 2.093869 TCCTGAGTACCCATTAACGTGC 60.094 50.000 0.00 0.00 0.00 5.34
615 654 0.109723 ACCCATTAACGTGCACCAGT 59.890 50.000 12.15 0.63 0.00 4.00
640 679 1.065126 AGATTACCTGGAGCAAGCCAC 60.065 52.381 0.00 0.00 33.52 5.01
643 682 3.970410 CCTGGAGCAAGCCACCCA 61.970 66.667 0.00 0.00 33.52 4.51
644 683 2.357836 CTGGAGCAAGCCACCCAT 59.642 61.111 4.02 0.00 33.52 4.00
685 724 4.411327 CCATGCTTTACACAACCGTAATG 58.589 43.478 0.00 0.00 31.65 1.90
729 775 0.673644 ACTCATTTTCCTCGCCGTGG 60.674 55.000 0.00 0.00 0.00 4.94
791 838 1.241315 GCAGCCTTAAACCCAAGCGA 61.241 55.000 0.00 0.00 0.00 4.93
830 877 2.638480 ACCTTCACTAGCAAGCACAA 57.362 45.000 0.00 0.00 0.00 3.33
906 953 0.508641 CGTTGCACCAAAGAGAGTCG 59.491 55.000 0.00 0.00 0.00 4.18
929 976 1.466167 CCAGAGGCGAAATCACAGTTG 59.534 52.381 0.00 0.00 0.00 3.16
936 983 2.096218 GCGAAATCACAGTTGAGACCAC 60.096 50.000 0.00 0.00 34.35 4.16
960 1008 1.135859 CAAAATCACAGGAGAGTGCGC 60.136 52.381 0.00 0.00 39.35 6.09
961 1009 1.016130 AAATCACAGGAGAGTGCGCG 61.016 55.000 0.00 0.00 39.35 6.86
1038 1086 1.530771 GACCCATCTCCTGCAGCAT 59.469 57.895 8.66 0.00 0.00 3.79
1281 1329 1.152830 TGGGTTTGAAGGGTGCCTC 59.847 57.895 0.00 0.00 30.89 4.70
1351 1406 4.727507 TGCTACTTCAGAGGAGAATGAC 57.272 45.455 0.00 0.00 35.72 3.06
1367 1422 1.059584 TGACTCTCCAGGGGCAAACA 61.060 55.000 0.00 0.00 0.00 2.83
1368 1423 0.329596 GACTCTCCAGGGGCAAACAT 59.670 55.000 0.00 0.00 0.00 2.71
1369 1424 0.779997 ACTCTCCAGGGGCAAACATT 59.220 50.000 0.00 0.00 0.00 2.71
1370 1425 1.147817 ACTCTCCAGGGGCAAACATTT 59.852 47.619 0.00 0.00 0.00 2.32
1432 1487 6.485171 ACCAGCTGTAAGGAATAATGACTTT 58.515 36.000 13.81 0.00 0.00 2.66
1460 1515 3.001533 TGTCATGTTGCATCGATGATTCG 59.998 43.478 29.20 11.01 46.87 3.34
1486 1541 6.401474 CCGACATAGATCAATCCAATTTAGCG 60.401 42.308 0.00 0.00 0.00 4.26
1534 1589 7.556275 ACGGTTGTCCTATGAAAACAATGATAT 59.444 33.333 3.80 0.00 40.01 1.63
1556 1611 4.948847 TCGCAGATACATAGAACAGCATT 58.051 39.130 0.00 0.00 0.00 3.56
1557 1612 4.746611 TCGCAGATACATAGAACAGCATTG 59.253 41.667 0.00 0.00 0.00 2.82
1574 1631 6.093219 ACAGCATTGTGATCTTCATAACTGTC 59.907 38.462 0.00 0.00 33.09 3.51
1616 1673 3.189080 TGCAATCATCACAAGAAGTTCCG 59.811 43.478 0.00 0.00 0.00 4.30
1650 1707 5.572896 GTGCATGCCTGAAAAACATACTAAC 59.427 40.000 16.68 0.00 0.00 2.34
1658 1715 9.774742 GCCTGAAAAACATACTAACATAGAAAG 57.225 33.333 0.00 0.00 0.00 2.62
1689 2062 7.440198 TGTTTTGATACATGATCCTGCAAAAA 58.560 30.769 0.00 6.60 36.09 1.94
1691 2064 7.465353 TTTGATACATGATCCTGCAAAAAGA 57.535 32.000 0.00 0.00 33.07 2.52
1696 2069 8.701908 ATACATGATCCTGCAAAAAGACATAT 57.298 30.769 0.00 0.00 0.00 1.78
1715 2088 8.220559 AGACATATGTTTCCATTAGCTAACCAT 58.779 33.333 10.30 6.99 32.29 3.55
1744 2117 4.985044 ACAGTACTCGTTAACAATGTGC 57.015 40.909 6.39 4.77 0.00 4.57
1746 2119 3.427528 CAGTACTCGTTAACAATGTGCGT 59.572 43.478 6.39 0.00 0.00 5.24
1748 2121 2.206750 ACTCGTTAACAATGTGCGTGT 58.793 42.857 6.39 6.98 0.00 4.49
1755 2128 5.332430 CGTTAACAATGTGCGTGTAGTTGTA 60.332 40.000 6.39 0.00 33.10 2.41
1773 2146 9.680315 GTAGTTGTAGTACATATCCATGAGTTC 57.320 37.037 3.28 0.00 35.96 3.01
1792 2165 6.038603 TGAGTTCAACAATTTTCTGAGAGTGG 59.961 38.462 0.00 0.00 0.00 4.00
1798 2171 5.574188 ACAATTTTCTGAGAGTGGGCTAAT 58.426 37.500 0.00 0.00 0.00 1.73
1802 2175 4.640771 TTCTGAGAGTGGGCTAATTTGT 57.359 40.909 0.00 0.00 0.00 2.83
1850 2223 7.894364 TCCACATATTACTAGGGAGATCCTAAC 59.106 40.741 0.00 0.00 46.76 2.34
1876 2249 3.364549 TGAAACAAGCTTATCCCCATGG 58.635 45.455 4.14 4.14 0.00 3.66
1889 2262 0.177141 CCCATGGCAAAAGCATCAGG 59.823 55.000 6.09 0.00 0.00 3.86
1900 2273 1.188863 AGCATCAGGGCAAAATCCAC 58.811 50.000 0.00 0.00 35.83 4.02
1902 2275 1.135721 GCATCAGGGCAAAATCCACTC 59.864 52.381 0.00 0.00 0.00 3.51
1906 2279 1.542915 CAGGGCAAAATCCACTCACAG 59.457 52.381 0.00 0.00 0.00 3.66
1913 2286 4.232221 CAAAATCCACTCACAGCATCAAC 58.768 43.478 0.00 0.00 0.00 3.18
1920 2293 1.808945 CTCACAGCATCAACCAGTTCC 59.191 52.381 0.00 0.00 0.00 3.62
1921 2294 1.421268 TCACAGCATCAACCAGTTCCT 59.579 47.619 0.00 0.00 0.00 3.36
1922 2295 2.158623 TCACAGCATCAACCAGTTCCTT 60.159 45.455 0.00 0.00 0.00 3.36
1924 2297 3.068590 CACAGCATCAACCAGTTCCTTTT 59.931 43.478 0.00 0.00 0.00 2.27
1925 2298 3.706086 ACAGCATCAACCAGTTCCTTTTT 59.294 39.130 0.00 0.00 0.00 1.94
1949 2322 4.428294 TTTTTGAATTTCCCATGCACCA 57.572 36.364 0.00 0.00 0.00 4.17
1950 2323 4.428294 TTTTGAATTTCCCATGCACCAA 57.572 36.364 0.00 0.00 0.00 3.67
1951 2324 4.637387 TTTGAATTTCCCATGCACCAAT 57.363 36.364 0.00 0.00 0.00 3.16
1952 2325 3.891422 TGAATTTCCCATGCACCAATC 57.109 42.857 0.00 0.00 0.00 2.67
1953 2326 3.171528 TGAATTTCCCATGCACCAATCA 58.828 40.909 0.00 0.00 0.00 2.57
1954 2327 3.196039 TGAATTTCCCATGCACCAATCAG 59.804 43.478 0.00 0.00 0.00 2.90
1955 2328 2.307496 TTTCCCATGCACCAATCAGT 57.693 45.000 0.00 0.00 0.00 3.41
1956 2329 2.307496 TTCCCATGCACCAATCAGTT 57.693 45.000 0.00 0.00 0.00 3.16
1957 2330 1.838112 TCCCATGCACCAATCAGTTC 58.162 50.000 0.00 0.00 0.00 3.01
1958 2331 1.355381 TCCCATGCACCAATCAGTTCT 59.645 47.619 0.00 0.00 0.00 3.01
1959 2332 2.173519 CCCATGCACCAATCAGTTCTT 58.826 47.619 0.00 0.00 0.00 2.52
1960 2333 2.094390 CCCATGCACCAATCAGTTCTTG 60.094 50.000 0.00 0.00 0.00 3.02
1961 2334 2.821378 CCATGCACCAATCAGTTCTTGA 59.179 45.455 0.00 0.00 40.85 3.02
1963 2336 4.641541 CCATGCACCAATCAGTTCTTGATA 59.358 41.667 0.00 0.00 45.82 2.15
1964 2337 5.125900 CCATGCACCAATCAGTTCTTGATAA 59.874 40.000 0.00 0.00 45.82 1.75
1965 2338 6.350361 CCATGCACCAATCAGTTCTTGATAAA 60.350 38.462 0.00 0.00 45.82 1.40
2032 2413 9.471702 ACAGACATTAAATTCATTTGAGATCCT 57.528 29.630 0.00 0.00 0.00 3.24
2061 2442 0.846015 GATGTGGATGTGGATGGGGA 59.154 55.000 0.00 0.00 0.00 4.81
2068 2449 2.438434 GTGGATGGGGAAGTGGCG 60.438 66.667 0.00 0.00 0.00 5.69
2110 2491 0.378610 GCTAATCGCTTGGAACTGCC 59.621 55.000 0.00 0.00 35.14 4.85
2137 2518 0.605589 GGATAGGGATCTCGGCAGTG 59.394 60.000 0.00 0.00 32.15 3.66
2157 2538 7.322664 GCAGTGAAAAATTGGGAATATCTTGA 58.677 34.615 0.00 0.00 0.00 3.02
2164 2545 9.880157 AAAAATTGGGAATATCTTGACAATCTG 57.120 29.630 0.00 0.00 0.00 2.90
2174 2555 3.262660 TCTTGACAATCTGATGTGCTCCT 59.737 43.478 0.00 0.00 32.57 3.69
2175 2556 2.981898 TGACAATCTGATGTGCTCCTG 58.018 47.619 0.00 0.00 32.57 3.86
2176 2557 2.303890 TGACAATCTGATGTGCTCCTGT 59.696 45.455 0.00 0.00 32.57 4.00
2177 2558 3.244665 TGACAATCTGATGTGCTCCTGTT 60.245 43.478 0.00 0.00 32.57 3.16
2178 2559 4.020307 TGACAATCTGATGTGCTCCTGTTA 60.020 41.667 0.00 0.00 32.57 2.41
2179 2560 5.108187 ACAATCTGATGTGCTCCTGTTAT 57.892 39.130 0.00 0.00 30.82 1.89
2180 2561 4.880120 ACAATCTGATGTGCTCCTGTTATG 59.120 41.667 0.00 0.00 30.82 1.90
2181 2562 5.121105 CAATCTGATGTGCTCCTGTTATGA 58.879 41.667 0.00 0.00 0.00 2.15
2182 2563 4.128925 TCTGATGTGCTCCTGTTATGAC 57.871 45.455 0.00 0.00 0.00 3.06
2183 2564 3.118629 TCTGATGTGCTCCTGTTATGACC 60.119 47.826 0.00 0.00 0.00 4.02
2184 2565 2.205074 GATGTGCTCCTGTTATGACCG 58.795 52.381 0.00 0.00 0.00 4.79
2185 2566 0.249120 TGTGCTCCTGTTATGACCGG 59.751 55.000 0.00 0.00 0.00 5.28
2186 2567 0.535335 GTGCTCCTGTTATGACCGGA 59.465 55.000 9.46 0.85 36.90 5.14
2187 2568 0.535335 TGCTCCTGTTATGACCGGAC 59.465 55.000 9.46 1.07 34.65 4.79
2188 2569 0.535335 GCTCCTGTTATGACCGGACA 59.465 55.000 9.46 9.50 34.65 4.02
2189 2570 1.471676 GCTCCTGTTATGACCGGACAG 60.472 57.143 9.46 11.23 40.27 3.51
2210 2591 2.898612 GGTCTATACCAGTAAGAGGCCC 59.101 54.545 0.00 0.00 45.98 5.80
2211 2592 3.573695 GTCTATACCAGTAAGAGGCCCA 58.426 50.000 0.00 0.00 0.00 5.36
2212 2593 3.321396 GTCTATACCAGTAAGAGGCCCAC 59.679 52.174 0.00 0.00 0.00 4.61
2213 2594 1.508256 ATACCAGTAAGAGGCCCACC 58.492 55.000 0.00 0.00 0.00 4.61
2214 2595 0.974010 TACCAGTAAGAGGCCCACCG 60.974 60.000 0.00 0.00 42.76 4.94
2215 2596 2.584608 CAGTAAGAGGCCCACCGG 59.415 66.667 0.00 0.00 42.76 5.28
2228 2609 3.053831 CCCACCGGGCATTAGTATTAG 57.946 52.381 6.32 0.00 35.35 1.73
2229 2610 2.290071 CCCACCGGGCATTAGTATTAGG 60.290 54.545 6.32 0.00 35.35 2.69
2230 2611 2.290071 CCACCGGGCATTAGTATTAGGG 60.290 54.545 6.32 0.00 0.00 3.53
2231 2612 1.350019 ACCGGGCATTAGTATTAGGGC 59.650 52.381 6.32 0.00 0.00 5.19
2232 2613 1.628846 CCGGGCATTAGTATTAGGGCT 59.371 52.381 0.00 0.00 0.00 5.19
2233 2614 2.039879 CCGGGCATTAGTATTAGGGCTT 59.960 50.000 0.00 0.00 0.00 4.35
2234 2615 3.074412 CGGGCATTAGTATTAGGGCTTG 58.926 50.000 0.00 0.00 0.00 4.01
2235 2616 3.496160 CGGGCATTAGTATTAGGGCTTGT 60.496 47.826 0.00 0.00 0.00 3.16
2236 2617 4.072839 GGGCATTAGTATTAGGGCTTGTC 58.927 47.826 0.00 0.00 0.00 3.18
2237 2618 4.072839 GGCATTAGTATTAGGGCTTGTCC 58.927 47.826 0.00 0.00 0.00 4.02
2253 2634 3.536956 TGTCCCGCAAGTTATCTTAGG 57.463 47.619 0.00 2.00 33.46 2.69
2254 2635 2.210961 GTCCCGCAAGTTATCTTAGGC 58.789 52.381 0.00 0.00 32.81 3.93
2255 2636 1.834896 TCCCGCAAGTTATCTTAGGCA 59.165 47.619 0.00 0.00 32.81 4.75
2256 2637 2.237643 TCCCGCAAGTTATCTTAGGCAA 59.762 45.455 0.00 0.00 32.81 4.52
2257 2638 2.614057 CCCGCAAGTTATCTTAGGCAAG 59.386 50.000 0.00 0.00 32.81 4.01
2258 2639 3.270877 CCGCAAGTTATCTTAGGCAAGT 58.729 45.455 0.00 0.00 33.20 3.16
2259 2640 3.689649 CCGCAAGTTATCTTAGGCAAGTT 59.310 43.478 0.00 0.00 33.20 2.66
2260 2641 4.873827 CCGCAAGTTATCTTAGGCAAGTTA 59.126 41.667 0.00 0.00 33.20 2.24
2261 2642 5.527582 CCGCAAGTTATCTTAGGCAAGTTAT 59.472 40.000 0.00 0.00 33.20 1.89
2262 2643 6.292919 CCGCAAGTTATCTTAGGCAAGTTATC 60.293 42.308 0.00 0.00 33.20 1.75
2263 2644 6.480320 CGCAAGTTATCTTAGGCAAGTTATCT 59.520 38.462 0.00 0.00 33.20 1.98
2264 2645 7.011482 CGCAAGTTATCTTAGGCAAGTTATCTT 59.989 37.037 0.00 0.00 31.80 2.40
2265 2646 9.326413 GCAAGTTATCTTAGGCAAGTTATCTTA 57.674 33.333 0.00 0.00 31.15 2.10
2268 2649 8.151596 AGTTATCTTAGGCAAGTTATCTTAGGC 58.848 37.037 0.00 0.00 33.20 3.93
2269 2650 6.755542 ATCTTAGGCAAGTTATCTTAGGCT 57.244 37.500 12.93 12.93 39.15 4.58
2270 2651 7.857404 ATCTTAGGCAAGTTATCTTAGGCTA 57.143 36.000 11.62 11.62 38.00 3.93
2271 2652 7.670605 TCTTAGGCAAGTTATCTTAGGCTAA 57.329 36.000 19.15 19.15 41.33 3.09
2272 2653 8.086143 TCTTAGGCAAGTTATCTTAGGCTAAA 57.914 34.615 19.90 0.40 41.97 1.85
2273 2654 8.204836 TCTTAGGCAAGTTATCTTAGGCTAAAG 58.795 37.037 19.90 16.38 41.97 1.85
2274 2655 6.314899 AGGCAAGTTATCTTAGGCTAAAGT 57.685 37.500 8.54 2.64 36.60 2.66
2275 2656 6.722328 AGGCAAGTTATCTTAGGCTAAAGTT 58.278 36.000 8.54 0.00 36.60 2.66
2276 2657 7.858498 AGGCAAGTTATCTTAGGCTAAAGTTA 58.142 34.615 8.54 0.00 36.60 2.24
2277 2658 8.495260 AGGCAAGTTATCTTAGGCTAAAGTTAT 58.505 33.333 8.54 2.97 36.60 1.89
2278 2659 9.774413 GGCAAGTTATCTTAGGCTAAAGTTATA 57.226 33.333 8.54 2.09 32.07 0.98
2299 2680 9.178427 GTTATAAATACTAGCTGTAAGACACCG 57.822 37.037 0.00 0.00 34.07 4.94
2300 2681 5.656213 AAATACTAGCTGTAAGACACCGT 57.344 39.130 0.00 0.00 34.07 4.83
2301 2682 5.656213 AATACTAGCTGTAAGACACCGTT 57.344 39.130 0.00 0.00 34.07 4.44
2302 2683 3.299340 ACTAGCTGTAAGACACCGTTG 57.701 47.619 0.00 0.00 34.07 4.10
2303 2684 2.029290 ACTAGCTGTAAGACACCGTTGG 60.029 50.000 0.00 0.00 34.07 3.77
2304 2685 1.045407 AGCTGTAAGACACCGTTGGA 58.955 50.000 0.00 0.00 34.07 3.53
2305 2686 1.000955 AGCTGTAAGACACCGTTGGAG 59.999 52.381 0.00 0.00 34.07 3.86
2306 2687 1.000506 GCTGTAAGACACCGTTGGAGA 59.999 52.381 0.00 0.00 34.07 3.71
2307 2688 2.353803 GCTGTAAGACACCGTTGGAGAT 60.354 50.000 0.00 0.00 34.07 2.75
2308 2689 3.512680 CTGTAAGACACCGTTGGAGATC 58.487 50.000 0.00 0.00 34.07 2.75
2309 2690 2.894765 TGTAAGACACCGTTGGAGATCA 59.105 45.455 0.00 0.00 0.00 2.92
2310 2691 3.322541 TGTAAGACACCGTTGGAGATCAA 59.677 43.478 0.00 0.00 0.00 2.57
2311 2692 2.751166 AGACACCGTTGGAGATCAAG 57.249 50.000 0.00 0.00 35.80 3.02
2312 2693 1.079503 GACACCGTTGGAGATCAAGC 58.920 55.000 0.00 0.00 35.80 4.01
2313 2694 0.396435 ACACCGTTGGAGATCAAGCA 59.604 50.000 0.00 0.00 35.80 3.91
2314 2695 1.202758 ACACCGTTGGAGATCAAGCAA 60.203 47.619 0.00 0.00 35.80 3.91
2315 2696 2.086869 CACCGTTGGAGATCAAGCAAT 58.913 47.619 0.00 0.00 35.80 3.56
2316 2697 3.270027 CACCGTTGGAGATCAAGCAATA 58.730 45.455 0.00 0.00 35.80 1.90
2317 2698 3.689161 CACCGTTGGAGATCAAGCAATAA 59.311 43.478 0.00 0.00 35.80 1.40
2318 2699 4.155826 CACCGTTGGAGATCAAGCAATAAA 59.844 41.667 0.00 0.00 35.80 1.40
2319 2700 4.396166 ACCGTTGGAGATCAAGCAATAAAG 59.604 41.667 0.00 0.00 35.80 1.85
2320 2701 4.635765 CCGTTGGAGATCAAGCAATAAAGA 59.364 41.667 0.00 0.00 35.80 2.52
2321 2702 5.297776 CCGTTGGAGATCAAGCAATAAAGAT 59.702 40.000 0.00 0.00 35.80 2.40
2322 2703 6.483307 CCGTTGGAGATCAAGCAATAAAGATA 59.517 38.462 0.00 0.00 35.80 1.98
2323 2704 7.173907 CCGTTGGAGATCAAGCAATAAAGATAT 59.826 37.037 0.00 0.00 35.80 1.63
2324 2705 8.562892 CGTTGGAGATCAAGCAATAAAGATATT 58.437 33.333 0.00 0.00 35.80 1.28
2342 2723 8.553459 AAGATATTATAATCTTCTGTTGCCCG 57.447 34.615 0.00 0.00 41.34 6.13
2343 2724 7.106239 AGATATTATAATCTTCTGTTGCCCGG 58.894 38.462 0.00 0.00 32.09 5.73
2344 2725 1.680338 ATAATCTTCTGTTGCCCGGC 58.320 50.000 1.04 1.04 0.00 6.13
2345 2726 0.618458 TAATCTTCTGTTGCCCGGCT 59.382 50.000 11.61 0.00 0.00 5.52
2346 2727 0.678048 AATCTTCTGTTGCCCGGCTC 60.678 55.000 11.61 4.64 0.00 4.70
2347 2728 2.543067 ATCTTCTGTTGCCCGGCTCC 62.543 60.000 11.61 1.27 0.00 4.70
2348 2729 4.344865 TTCTGTTGCCCGGCTCCC 62.345 66.667 11.61 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 7.913674 AACATCTGTTAAAGTTTGCCAAAAA 57.086 28.000 0.00 0.00 36.32 1.94
17 18 7.099764 TCAAAAACATCTGTTAAAGTTTGCCA 58.900 30.769 10.79 0.00 37.25 4.92
30 31 4.233123 TGCAAGCTCTCAAAAACATCTG 57.767 40.909 0.00 0.00 0.00 2.90
71 72 0.241749 TGCTGCGGCTTTTCTGAATG 59.758 50.000 20.27 0.00 39.59 2.67
76 77 3.658757 TTTTATTGCTGCGGCTTTTCT 57.341 38.095 20.27 1.21 39.59 2.52
83 84 6.035866 TGCTGATTTTATTTTTATTGCTGCGG 59.964 34.615 0.00 0.00 0.00 5.69
128 161 6.959671 GATTTATGGAAATCGTGGCAAAAA 57.040 33.333 0.00 0.00 41.12 1.94
157 190 7.884257 TCAGTGCTTACAAAATTTCATCATGA 58.116 30.769 0.00 0.00 0.00 3.07
170 203 5.588246 TGACAAATGTTCTCAGTGCTTACAA 59.412 36.000 0.00 0.00 0.00 2.41
302 339 6.530534 ACATTATGGAACGAAGAAAGTAGTCG 59.469 38.462 0.00 0.00 40.56 4.18
310 347 6.392354 ACGTCTTACATTATGGAACGAAGAA 58.608 36.000 8.44 0.00 0.00 2.52
314 351 6.424509 ACAAAACGTCTTACATTATGGAACGA 59.575 34.615 8.44 0.00 0.00 3.85
318 355 5.106475 GCCACAAAACGTCTTACATTATGGA 60.106 40.000 0.00 0.00 0.00 3.41
326 363 4.145997 CGTAATGCCACAAAACGTCTTAC 58.854 43.478 0.00 0.00 0.00 2.34
338 375 2.207590 GCCTAAGTACCGTAATGCCAC 58.792 52.381 0.00 0.00 0.00 5.01
340 377 1.541889 GGGCCTAAGTACCGTAATGCC 60.542 57.143 0.84 0.00 36.92 4.40
357 394 0.744771 GTGAGGATTCCGAACAGGGC 60.745 60.000 0.00 0.00 41.52 5.19
360 397 2.009042 GCCAGTGAGGATTCCGAACAG 61.009 57.143 11.80 5.32 41.22 3.16
385 422 0.249489 CCTCAGCTCCCGGTATTTCG 60.249 60.000 0.00 0.00 0.00 3.46
417 455 0.179067 AGTTGGAAAACGTGGAGCGA 60.179 50.000 0.00 0.00 44.77 4.93
459 497 2.650116 CCTCCACTCCACAGGTCCG 61.650 68.421 0.00 0.00 0.00 4.79
472 510 1.257743 CTCTGTTCGGAAGACCTCCA 58.742 55.000 0.00 0.00 45.74 3.86
529 568 3.097614 ACTATGGACAGGTGTGGTAGTC 58.902 50.000 0.00 0.00 0.00 2.59
532 571 3.770933 GGTTACTATGGACAGGTGTGGTA 59.229 47.826 0.00 0.00 0.00 3.25
560 599 7.345914 ACAACATAGCCCTACTCTAGAGATTTT 59.654 37.037 26.57 6.29 0.00 1.82
609 648 5.160607 TCCAGGTAATCTGTAAACTGGTG 57.839 43.478 6.32 0.00 44.39 4.17
615 654 4.261801 GCTTGCTCCAGGTAATCTGTAAA 58.738 43.478 0.00 0.00 41.83 2.01
729 775 4.370364 TCTTGTGCTTTGGTTTGAAGAC 57.630 40.909 0.00 0.00 0.00 3.01
830 877 3.771160 GGGTCGCCGTCTCCATGT 61.771 66.667 0.00 0.00 0.00 3.21
853 900 5.308237 AGGAAGACCAGTTTATATAGGGCTG 59.692 44.000 0.00 0.50 38.98 4.85
854 901 5.477913 AGGAAGACCAGTTTATATAGGGCT 58.522 41.667 0.00 0.00 42.67 5.19
896 943 1.551452 CCTCTGGTCCGACTCTCTTT 58.449 55.000 0.00 0.00 0.00 2.52
906 953 0.036388 TGTGATTTCGCCTCTGGTCC 60.036 55.000 0.00 0.00 0.00 4.46
929 976 2.227388 CTGTGATTTTGCCTGTGGTCTC 59.773 50.000 0.00 0.00 0.00 3.36
936 983 2.486982 CACTCTCCTGTGATTTTGCCTG 59.513 50.000 0.00 0.00 40.12 4.85
960 1008 2.048222 TGCTTTCGCCTCTGGTCG 60.048 61.111 0.00 0.00 34.43 4.79
961 1009 0.320771 TTCTGCTTTCGCCTCTGGTC 60.321 55.000 0.00 0.00 34.43 4.02
1056 1104 0.397254 CCCTCATAGACCGTCCCAGT 60.397 60.000 0.00 0.00 0.00 4.00
1233 1281 4.421479 CGGCGCTTGAGACTCCGT 62.421 66.667 7.64 0.00 35.75 4.69
1235 1283 4.821589 CCCGGCGCTTGAGACTCC 62.822 72.222 7.64 0.00 0.00 3.85
1281 1329 0.607489 CCAGCTGGAACTTCACAGGG 60.607 60.000 29.88 0.00 37.39 4.45
1351 1406 1.928868 AAATGTTTGCCCCTGGAGAG 58.071 50.000 0.00 0.00 0.00 3.20
1394 1449 5.959618 ACAGCTGGTTAATTTACAGGAAC 57.040 39.130 19.93 0.00 32.98 3.62
1460 1515 5.695851 AAATTGGATTGATCTATGTCGGC 57.304 39.130 0.00 0.00 0.00 5.54
1486 1541 4.976116 GTGTCATTTTACCTGTTTCTGTGC 59.024 41.667 0.00 0.00 0.00 4.57
1534 1589 4.590850 ATGCTGTTCTATGTATCTGCGA 57.409 40.909 0.00 0.00 0.00 5.10
1556 1611 7.989170 AGCATTATGACAGTTATGAAGATCACA 59.011 33.333 0.00 0.00 0.00 3.58
1557 1612 8.281194 CAGCATTATGACAGTTATGAAGATCAC 58.719 37.037 0.00 0.00 0.00 3.06
1574 1631 3.833442 CATATGTGGCTGCAGCATTATG 58.167 45.455 37.63 28.83 44.36 1.90
1658 1715 8.019669 GCAGGATCATGTATCAAAACATATGTC 58.980 37.037 9.23 0.00 38.01 3.06
1662 1719 7.878547 TTGCAGGATCATGTATCAAAACATA 57.121 32.000 9.42 0.00 38.01 2.29
1712 2085 8.714179 TGTTAACGAGTACTGTTCATTTTATGG 58.286 33.333 0.00 0.00 0.00 2.74
1744 2117 7.645402 TCATGGATATGTACTACAACTACACG 58.355 38.462 0.00 0.00 35.73 4.49
1746 2119 8.762481 ACTCATGGATATGTACTACAACTACA 57.238 34.615 0.00 0.00 35.73 2.74
1748 2121 9.416284 TGAACTCATGGATATGTACTACAACTA 57.584 33.333 0.00 0.00 35.73 2.24
1755 2128 9.466497 AAATTGTTGAACTCATGGATATGTACT 57.534 29.630 0.00 0.00 35.73 2.73
1773 2146 3.571401 AGCCCACTCTCAGAAAATTGTTG 59.429 43.478 0.00 0.00 0.00 3.33
1782 2155 4.162320 CCTACAAATTAGCCCACTCTCAGA 59.838 45.833 0.00 0.00 0.00 3.27
1792 2165 4.010349 AGTTGCACTCCTACAAATTAGCC 58.990 43.478 0.00 0.00 0.00 3.93
1798 2171 9.953565 ACTATTTATTAGTTGCACTCCTACAAA 57.046 29.630 0.00 0.00 37.96 2.83
1802 2175 8.202137 GTGGACTATTTATTAGTTGCACTCCTA 58.798 37.037 0.00 0.00 41.35 2.94
1838 2211 5.745227 TGTTTCAGATTGTTAGGATCTCCC 58.255 41.667 0.00 0.00 36.42 4.30
1847 2220 6.377146 GGGGATAAGCTTGTTTCAGATTGTTA 59.623 38.462 9.86 0.00 0.00 2.41
1850 2223 4.706476 TGGGGATAAGCTTGTTTCAGATTG 59.294 41.667 9.86 0.00 0.00 2.67
1889 2262 0.961019 TGCTGTGAGTGGATTTTGCC 59.039 50.000 0.00 0.00 0.00 4.52
1900 2273 1.808945 GGAACTGGTTGATGCTGTGAG 59.191 52.381 0.00 0.00 0.00 3.51
1902 2275 1.901591 AGGAACTGGTTGATGCTGTG 58.098 50.000 0.00 0.00 37.18 3.66
1928 2301 4.428294 TGGTGCATGGGAAATTCAAAAA 57.572 36.364 0.00 0.00 0.00 1.94
1929 2302 4.428294 TTGGTGCATGGGAAATTCAAAA 57.572 36.364 0.00 0.00 0.00 2.44
1930 2303 4.041321 TGATTGGTGCATGGGAAATTCAAA 59.959 37.500 0.00 0.00 0.00 2.69
1931 2304 3.581770 TGATTGGTGCATGGGAAATTCAA 59.418 39.130 0.00 0.00 0.00 2.69
1932 2305 3.171528 TGATTGGTGCATGGGAAATTCA 58.828 40.909 0.00 0.00 0.00 2.57
1933 2306 3.196254 ACTGATTGGTGCATGGGAAATTC 59.804 43.478 0.00 0.00 0.00 2.17
1934 2307 3.175594 ACTGATTGGTGCATGGGAAATT 58.824 40.909 0.00 0.00 0.00 1.82
1935 2308 2.823959 ACTGATTGGTGCATGGGAAAT 58.176 42.857 0.00 0.00 0.00 2.17
1936 2309 2.307496 ACTGATTGGTGCATGGGAAA 57.693 45.000 0.00 0.00 0.00 3.13
1937 2310 2.170166 GAACTGATTGGTGCATGGGAA 58.830 47.619 0.00 0.00 0.00 3.97
1938 2311 1.355381 AGAACTGATTGGTGCATGGGA 59.645 47.619 0.00 0.00 0.00 4.37
1939 2312 1.843368 AGAACTGATTGGTGCATGGG 58.157 50.000 0.00 0.00 0.00 4.00
1940 2313 2.821378 TCAAGAACTGATTGGTGCATGG 59.179 45.455 0.00 0.00 0.00 3.66
1941 2314 4.713824 ATCAAGAACTGATTGGTGCATG 57.286 40.909 0.00 0.00 42.46 4.06
1942 2315 6.839124 TTTATCAAGAACTGATTGGTGCAT 57.161 33.333 0.00 0.00 42.46 3.96
1943 2316 6.647334 TTTTATCAAGAACTGATTGGTGCA 57.353 33.333 0.00 0.00 42.46 4.57
1944 2317 9.638239 TTTATTTTATCAAGAACTGATTGGTGC 57.362 29.630 0.00 0.00 42.46 5.01
2016 2393 8.737168 TTCATCGTAAGGATCTCAAATGAATT 57.263 30.769 0.00 0.00 31.28 2.17
2022 2399 6.758416 CACATCTTCATCGTAAGGATCTCAAA 59.242 38.462 0.00 0.00 31.28 2.69
2032 2413 4.161377 TCCACATCCACATCTTCATCGTAA 59.839 41.667 0.00 0.00 0.00 3.18
2110 2491 0.838122 AGATCCCTATCCAAGCCCCG 60.838 60.000 0.00 0.00 31.98 5.73
2157 2538 3.430042 AACAGGAGCACATCAGATTGT 57.570 42.857 0.00 0.00 0.00 2.71
2164 2545 2.205074 CGGTCATAACAGGAGCACATC 58.795 52.381 0.00 0.00 33.16 3.06
2190 2571 3.321396 GTGGGCCTCTTACTGGTATAGAC 59.679 52.174 4.53 0.00 0.00 2.59
2191 2572 3.573695 GTGGGCCTCTTACTGGTATAGA 58.426 50.000 4.53 0.00 0.00 1.98
2192 2573 2.633481 GGTGGGCCTCTTACTGGTATAG 59.367 54.545 4.53 0.00 0.00 1.31
2193 2574 2.686119 GGTGGGCCTCTTACTGGTATA 58.314 52.381 4.53 0.00 0.00 1.47
2194 2575 1.508256 GGTGGGCCTCTTACTGGTAT 58.492 55.000 4.53 0.00 0.00 2.73
2195 2576 0.974010 CGGTGGGCCTCTTACTGGTA 60.974 60.000 4.53 0.00 0.00 3.25
2196 2577 2.291043 CGGTGGGCCTCTTACTGGT 61.291 63.158 4.53 0.00 0.00 4.00
2197 2578 2.584608 CGGTGGGCCTCTTACTGG 59.415 66.667 4.53 0.00 0.00 4.00
2198 2579 2.584608 CCGGTGGGCCTCTTACTG 59.415 66.667 4.53 0.00 0.00 2.74
2199 2580 2.687566 CCCGGTGGGCCTCTTACT 60.688 66.667 4.53 0.00 35.35 2.24
2209 2590 2.290071 CCCTAATACTAATGCCCGGTGG 60.290 54.545 0.00 0.00 0.00 4.61
2210 2591 2.874457 GCCCTAATACTAATGCCCGGTG 60.874 54.545 0.00 0.00 0.00 4.94
2211 2592 1.350019 GCCCTAATACTAATGCCCGGT 59.650 52.381 0.00 0.00 0.00 5.28
2212 2593 1.628846 AGCCCTAATACTAATGCCCGG 59.371 52.381 0.00 0.00 0.00 5.73
2213 2594 3.074412 CAAGCCCTAATACTAATGCCCG 58.926 50.000 0.00 0.00 0.00 6.13
2214 2595 4.072839 GACAAGCCCTAATACTAATGCCC 58.927 47.826 0.00 0.00 0.00 5.36
2215 2596 4.072839 GGACAAGCCCTAATACTAATGCC 58.927 47.826 0.00 0.00 0.00 4.40
2232 2613 3.869065 CCTAAGATAACTTGCGGGACAA 58.131 45.455 0.00 0.00 37.53 3.18
2233 2614 2.419574 GCCTAAGATAACTTGCGGGACA 60.420 50.000 0.00 0.00 37.53 4.02
2234 2615 2.210961 GCCTAAGATAACTTGCGGGAC 58.789 52.381 0.00 0.00 37.53 4.46
2235 2616 1.834896 TGCCTAAGATAACTTGCGGGA 59.165 47.619 0.00 0.00 37.53 5.14
2236 2617 2.325583 TGCCTAAGATAACTTGCGGG 57.674 50.000 0.00 0.00 37.53 6.13
2237 2618 3.270877 ACTTGCCTAAGATAACTTGCGG 58.729 45.455 0.00 0.00 37.36 5.69
2238 2619 4.946784 AACTTGCCTAAGATAACTTGCG 57.053 40.909 0.00 0.00 37.36 4.85
2239 2620 7.793927 AGATAACTTGCCTAAGATAACTTGC 57.206 36.000 0.00 0.00 37.36 4.01
2242 2623 8.151596 GCCTAAGATAACTTGCCTAAGATAACT 58.848 37.037 0.00 0.00 37.36 2.24
2243 2624 8.151596 AGCCTAAGATAACTTGCCTAAGATAAC 58.848 37.037 0.00 0.00 37.36 1.89
2244 2625 8.263854 AGCCTAAGATAACTTGCCTAAGATAA 57.736 34.615 0.00 0.00 37.36 1.75
2245 2626 7.857404 AGCCTAAGATAACTTGCCTAAGATA 57.143 36.000 0.00 0.00 37.36 1.98
2246 2627 6.755542 AGCCTAAGATAACTTGCCTAAGAT 57.244 37.500 0.00 0.00 37.36 2.40
2247 2628 7.670605 TTAGCCTAAGATAACTTGCCTAAGA 57.329 36.000 0.00 0.00 37.36 2.10
2248 2629 7.988028 ACTTTAGCCTAAGATAACTTGCCTAAG 59.012 37.037 2.69 1.76 39.86 2.18
2249 2630 7.858498 ACTTTAGCCTAAGATAACTTGCCTAA 58.142 34.615 2.69 0.00 37.53 2.69
2250 2631 7.433537 ACTTTAGCCTAAGATAACTTGCCTA 57.566 36.000 2.69 0.00 37.53 3.93
2251 2632 6.314899 ACTTTAGCCTAAGATAACTTGCCT 57.685 37.500 2.69 0.00 37.53 4.75
2252 2633 8.678593 ATAACTTTAGCCTAAGATAACTTGCC 57.321 34.615 2.69 0.00 37.53 4.52
2273 2654 9.178427 CGGTGTCTTACAGCTAGTATTTATAAC 57.822 37.037 7.55 0.00 43.87 1.89
2274 2655 8.906867 ACGGTGTCTTACAGCTAGTATTTATAA 58.093 33.333 7.55 0.00 43.87 0.98
2275 2656 8.455903 ACGGTGTCTTACAGCTAGTATTTATA 57.544 34.615 7.55 0.00 43.87 0.98
2276 2657 7.344095 ACGGTGTCTTACAGCTAGTATTTAT 57.656 36.000 7.55 0.00 43.87 1.40
2277 2658 6.764308 ACGGTGTCTTACAGCTAGTATTTA 57.236 37.500 7.55 0.00 43.87 1.40
2278 2659 5.656213 ACGGTGTCTTACAGCTAGTATTT 57.344 39.130 7.55 0.00 43.87 1.40
2279 2660 5.408356 CAACGGTGTCTTACAGCTAGTATT 58.592 41.667 7.55 0.00 43.87 1.89
2280 2661 4.142227 CCAACGGTGTCTTACAGCTAGTAT 60.142 45.833 0.00 0.00 43.87 2.12
2281 2662 3.192001 CCAACGGTGTCTTACAGCTAGTA 59.808 47.826 0.00 0.00 43.87 1.82
2282 2663 2.029290 CCAACGGTGTCTTACAGCTAGT 60.029 50.000 0.00 0.00 43.87 2.57
2283 2664 2.230508 TCCAACGGTGTCTTACAGCTAG 59.769 50.000 0.00 0.00 43.87 3.42
2284 2665 2.230508 CTCCAACGGTGTCTTACAGCTA 59.769 50.000 0.00 0.00 43.87 3.32
2285 2666 1.000955 CTCCAACGGTGTCTTACAGCT 59.999 52.381 0.00 0.00 43.87 4.24
2286 2667 1.000506 TCTCCAACGGTGTCTTACAGC 59.999 52.381 0.00 0.00 42.72 4.40
2287 2668 3.056821 TGATCTCCAACGGTGTCTTACAG 60.057 47.826 0.00 0.00 0.00 2.74
2288 2669 2.894765 TGATCTCCAACGGTGTCTTACA 59.105 45.455 0.00 0.00 0.00 2.41
2289 2670 3.587797 TGATCTCCAACGGTGTCTTAC 57.412 47.619 0.00 0.00 0.00 2.34
2290 2671 3.616560 GCTTGATCTCCAACGGTGTCTTA 60.617 47.826 0.00 0.00 0.00 2.10
2291 2672 2.872038 GCTTGATCTCCAACGGTGTCTT 60.872 50.000 0.00 0.00 0.00 3.01
2292 2673 1.338200 GCTTGATCTCCAACGGTGTCT 60.338 52.381 0.00 0.00 0.00 3.41
2293 2674 1.079503 GCTTGATCTCCAACGGTGTC 58.920 55.000 0.00 0.00 0.00 3.67
2294 2675 0.396435 TGCTTGATCTCCAACGGTGT 59.604 50.000 0.00 0.00 0.00 4.16
2295 2676 1.522668 TTGCTTGATCTCCAACGGTG 58.477 50.000 0.00 0.00 0.00 4.94
2296 2677 2.496899 ATTGCTTGATCTCCAACGGT 57.503 45.000 0.00 0.00 0.00 4.83
2297 2678 4.635765 TCTTTATTGCTTGATCTCCAACGG 59.364 41.667 0.00 0.00 0.00 4.44
2298 2679 5.801350 TCTTTATTGCTTGATCTCCAACG 57.199 39.130 0.00 0.00 0.00 4.10
2316 2697 9.003658 CGGGCAACAGAAGATTATAATATCTTT 57.996 33.333 9.48 3.24 40.85 2.52
2317 2698 7.607991 CCGGGCAACAGAAGATTATAATATCTT 59.392 37.037 9.48 5.94 42.37 2.40
2318 2699 7.106239 CCGGGCAACAGAAGATTATAATATCT 58.894 38.462 0.00 2.97 35.54 1.98
2319 2700 6.183360 GCCGGGCAACAGAAGATTATAATATC 60.183 42.308 15.62 0.64 39.74 1.63
2320 2701 5.648092 GCCGGGCAACAGAAGATTATAATAT 59.352 40.000 15.62 0.00 39.74 1.28
2321 2702 5.001232 GCCGGGCAACAGAAGATTATAATA 58.999 41.667 15.62 0.00 39.74 0.98
2322 2703 3.821033 GCCGGGCAACAGAAGATTATAAT 59.179 43.478 15.62 0.00 39.74 1.28
2323 2704 3.118038 AGCCGGGCAACAGAAGATTATAA 60.118 43.478 23.09 0.00 39.74 0.98
2324 2705 2.438021 AGCCGGGCAACAGAAGATTATA 59.562 45.455 23.09 0.00 39.74 0.98
2325 2706 1.212935 AGCCGGGCAACAGAAGATTAT 59.787 47.619 23.09 0.00 39.74 1.28
2326 2707 0.618458 AGCCGGGCAACAGAAGATTA 59.382 50.000 23.09 0.00 39.74 1.75
2327 2708 0.678048 GAGCCGGGCAACAGAAGATT 60.678 55.000 23.09 0.00 39.74 2.40
2328 2709 1.078143 GAGCCGGGCAACAGAAGAT 60.078 57.895 23.09 0.00 39.74 2.40
2329 2710 2.347490 GAGCCGGGCAACAGAAGA 59.653 61.111 23.09 0.00 39.74 2.87
2330 2711 2.747855 GGAGCCGGGCAACAGAAG 60.748 66.667 23.09 0.00 39.74 2.85
2331 2712 4.344865 GGGAGCCGGGCAACAGAA 62.345 66.667 23.09 0.00 39.74 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.