>input_sequence_83003
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-------ATGGAGGCCACCACCTCGCCGACCCATCTCCTGCAGCATTGCTCCGGCAGCGATGAACTGGGACGGTCTATGA
GGGTGTACTCCGCTGCGACCGGGAAGGTGCCGTTTGGGTGGGAGGACGAGCCGGGGAAGCCCAAGAGCCCGCCGAGGGAG
GGCGCCCTCCCGCCGCTGTGCCCATCGCCTGCGATGCAGAGCGCACGACTCACTGATGATAAAGACAGGCGGCGACGACG
ACGGAGTCTCAAGCGCCGGGCGGATCAAGGTGGGTTTGAAGGGTGCCTCCCTGTGAAGTTCCAGCTGGGGAGAGCCATGA
GGAGGTGGGACATCGTTTGCTACTTCAGAGGAGA-------ATGA-----------------------------------
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>chr6B_1_TraesCS6B01G385300
TAAAAAACGAATTTTTTTGGCAAACTTTAACAGATGTTTTTGAGAGCTTGCAAAGTTTCATTTTGAAATGACATTCAGAA
AAGCCGCAGCAATA-AAAATAAAATCAGCAC-------------------------------AGCATCGATTTATTATTT
TTTTTGCCACGATTTCCATAAATCTGATTTCATGATGAAATTTTGTAAGCACTGAGAACATTTGTCAATGTTCCGCACAA
AAAAAAA----TATTTTGTTTTAATTTTTTTTTATCATTTTACTGTCCATCCGAGCTCATTTGAGCTCGAGCTAAGAATA
GTCATGTCCCCAACTCTGCGACTACTTTCTTCGTTCCATAATGTAAGACGTTTTGTGGCATTACGGTACTTAGGCCCTGT
TCGGAATCCTCACTGGCTCCGCGAAATACCGGGAGCTGAGGA-CCAGGAAACAGTCGCTCCACGTTTTCCAACTGGAACT
CCACCTGCTCCGGGAGCGGACCTGTGGAGTGGAGGTCTTCCGAACAGAGCATTAGTTTCCTTCTTTTGCAGGTAAATTCA
TGAGC-TGACTACCACACCTGTCCATAGTAACCTATTGAAAATCTCTAGAGTAGGGCTATGTTGTCTCCTGAGTACCCAT
TAACGTGCACCAGTTTACAGATTACCTGGAGCAAGCCACCCATCCGTGGCCGCCGCTCCTGCCATGCTTTACACAACCGT
AATG-------GCCACCGTTACCGCCGGCCATGCCACTCATTTTCCTCGCCGTGGTCTTCAAACCAAAGCAC-AAGAAAA
GCTGCCTTGCTGCGTTTAGCAGCCTTAAACCCAAGCGATTGACTTTGCGAAAAGCAAACCTTCACTAGCAAGCACAACAT
GGAGACGGCGACCCCTTCCCAGCCCTATATAAACTGGTCTTCCTCCGCCGTGCCGTTGCACCAAAGAGAGTCGGACCAGA
GGCGAAATCACAGTTGAGACCACAGGC-AAAATCACAGGAGAGTGCGCGACCAGAGGCGAAAGCAGAAGAAACCGAAGGC
GAAATCCATGGAGGCCACCACCTCGCCGACCCATCTCCTGCAGCATTGCTCCGGCAGCGATGAACTGGGACGGTCTATGA
GGGTGTACTCCGCTGCGACCGGGAAGGTGCCGTTTGGGTGGGAGGACGAGCCGGGGAAGCCCAAGAGCCCGCCGAGGGAG
GGCGCCCTCCCGCCGCTGTGCCCATCGCCTGCGATGCAGAGCGCACGACTCACTGATGATAAAGACAGGCGGCGACGACG
ACGGAGTCTCAAGCGCCGGGCGGATCAAGGTGGGTTTGAAGGGTGCCTCCCTGTGAAGTTCCAGCTGGGGAGAGCCATGA
GGAGGTGGGACATCGTTTGCTACTTCAGAGGAGA-------ATGACTCTCCAGGGGCAAACATTTATTTACCTAGTGGAA
ATCTAACTGTTCCTGTAAATTAACCAGCTGTAAGGAATAATGACTTTTTTTTTGTCATGTTGCATCGATGATTCGCCGAC
ATAGATCAATCCAATTTAGCGCACAGAAACAGGTAAAATGACACGGTTGTCCTATGAAAACAATGATATCGCAGATACAT
AGAACAGCATTG--TGATCTTCATAACTGTCATAATGCTGCAGCCACATATGCAATCATCACAAGAAGTTCCGTTCCATG
TGGTGCATGCCTGAAAAACATACTAACATAGAAAGACATATGTT------------------------------------
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----------------------------------------TTGATACATGATCCTGCAAAAAGACATATGTTTCCATTAG
CTAACCATAAAATGAACAGTACTCGTTAACAATGTGCGTGTAGTTGTAGTACATATCCATGAGTTCAACAATTTTCTGAG
AGTGGGCTAATTTGTAGGAGTGCAACTAATAAATAGTCCACATATTACTAGGGAGATCCTAACAATCTGAAACAAGCTTA
TCCCCATGGCAAAAGCATCAGGGCAAAATCCACTCACAGCATCAACCAGTTCCTTTTTTTTTTTTGAATTTCCCATGCAC
CAATCAGTTCTTGATAAAATAAATGTATAATCAACAAAGCAACTT----AAAAAATCTACTTACAGACATTAAATTCATT
TGA----GATCCTTACGATGAAGATGTGGATGTGGATGGGGAAGTGGCGCCAGCCCTTAAGGCGCCATGAGGCTAATCGC
TTGGAACTGCCGGGGCTTGGATAGGGATCTCGGCAGTGAAAAATTGGGAATATCTTGACAATCTGATGTGCTCCTGTTAT
GACCGGACAGGTCTATACCAGTAAGAGGCCCACCGGGCATTAGTATTAGGGCTTGTCCCGCAAGTTATCTTAGGCAAGTT
ATCTTAGGCTAAAGTTATAAATACTAGCTGTAAGACACCGTTGGAGATCAAGCAATAAAGATATTATAATCTTCTGTTGC
CCGGCTCCCCA
>chr5B_1
TAAAAAACGAATTCTTTCGGCAAACTTTAATAGATGTTTTTGAGAGCTTGCAAAGTTTCATTTTGAAATGATATTCGGAA
AAGTCGCAGCAATATAAAATAAAATCAGCACTTCAATATGCTTTCGAAATTAGCATTTTTGGAGCATCGATTTTTTTTTA
CCGAGAC------TTCCATAAATCTGATTCCATGATGAAATTATGTAAGCATTGAGAACATTTGTCAATGTTTCGCACAA
AAAAGATTTTTTATTTTGTTTTAATT--TTTTTATCATTTTACTGTCCATCCGAGCTCATTTCAGCTCGAGCTAAGAATA
GTCATGTCCCCAACTCTGTGACTACTCTCTCCGTCCCATAATATAAGACGTTTTATTGCATTACGGTACTTAGACCTTGT
TCGGAATCC-CACTGACTCCGTGAAATACCGGGAGCTGAGGAGCCAGGAAACAGGCGCTCCACGTTTTCCAACTGGAACT
CCACCTGCTCCGGGAGTGGACCTGTGGAGCGGAGGTCTTCCGAACAGAGCATTAGTTTCCTTCTTTTGCAGGTAAATTCA
TGAGCTTACA-ACTACACCTGTCCATAGTAACCTATTGGAAATCTCTAGAGTA-GGCTATGTTGTCTCCTGAGTACCCA-
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>chr6A_503
CTTCCT--------------------------------------------------------------------------
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----------------------------------------------------------------TTTGCAGATAGATTCA
TGAGC-TACA-ACCACACCTGTCCATAATAACCTGCTGGAAATCTCTAGAGTA-GGCTATGTTGTCTCCGGAGTACCCAT
TAACGTGTGCCAGATTACCGATTACCTGGAGCAAGCCAACCC-CCGTGGCCGCCGCTCCTGCCATGCTTTACACAACCGT
AATTGTCATTTGCCACCGTGACCGCCGGCCGTGCCACTCATTTTCCTCGCCGTGATCTTCAAACCAAAGCACAAAGAAAA
GCTGCCTTGCTGTGTTGAGCAGCCTTAAAACCAAGCGTTTGACTTTGCGAAAAGCAAACCTTCATTAGCAAGCACACCAT
GGAGACGGCGACCCCTTCCTGGCCCTATATAAACTGGTCTTCCTCCGCCGTGCCGTTGCACC-AAGAGAGTCAGACCAGA
GGTGAAATCGCAGTTAAGACCATAAGCAAAAATCACAGGAGAGTGCG--ACGAGAGGCGAAAGCAGAAGAAAGCGAAGGC
GAAATCCATGGAGGCCACCACCTCGCCGACCCATCTCCTGCAGCACTGCTCTGGCAGCGATGAGCTGGGACGGTCTATGA
GGGTGTACTCCGCGGCAACCGGGAAGGTACCGTTTGGGTGGGAGGACGAGCCAGGGAAGCCCAAGAGCCCGCCAAGGGAG
GGCGCCCTCCCGCCGCTGTGCCCGTCGCCGGCGATGCAGAGCGCGCGACTCACTGATGATAAAGACAGGCGGCGACGACG
---GAGTCTCAAGCGCCGGGCAGATCAAGGTGGGTTTGAAGGGTGCCTGCCTGTGAAGTTCCAGCTGGGGAGAGCCATGA
GGAGGTGGGACATCGTTTGCTACTTCAGAGGAGA-------ATGATTCTCCAGGGGCAAAC----ATTTACCTAGTGAAA
ATCTAACTATTCCTGTATATTAACCAGCTGTAAGGAATAACGACTTCTTTTTCCCCCTGTTGCATTGATGATTCACCGAC
ATAGATCAATCCAATTTAGCACAAAGAAACAGGTAAAATGACACAGTTGTCCGGTGAAAACAATGATACCACAGATACAT
AGAACAGCATATTATGATCTTCATAACTGTAATAATGCTGCAGCCACATATGCAATCATCACAAGAAGTTCCATTCCATG
TGGTGCATGCCTGAAAAACATACTAAGATAGAAACAGAAATGTTAAGCACAGGCAATTAAGAAACGGTTGAGATACACAA
ACATTGCTCTTGATGCTCACCAAATTATGTGCAGAAACATCATGTAAATTTCTAAACCACATTTCCAAAAACACGCCACC
AATATCTTTTCCTGGATTGTCGACAGAGCAAATGATGAAAACGAGAACTACATGTCTTTAGTCTTCAAAGTTTGGCAAAG
TAACTAGCCATCAAGGTTATACATGCTTGGTAGACAGTAGAAGCTCAACCCTTGCTATGGCCGGCGAAGAAGTCAAATAG
TCCACTGCAAGTTTGCAATCCGGCAACGAGGTATACTGCATTGATACATGATCCTGCAAAAGGCCATACGTTTCCATTAG
CTAAGCAGAAAATGAACAGTACTCGTTAACAATGTGGGCGCAGTTGTGGTACATATCCATGAGTTGAACAATTTCCTGAG
AGTGAGCTAACTTGAAGGAGTGCAACTAATAAATAGTCCACATATTACTAAGGAGATCCAAAAAATCTGAAACAAGCTTA
TCCCCATGACAAAAGCATCAGAGCAAAATCCATTAACAACATCAATCAGTTCTAATACC---------------------
------------------ATAAATGTATAATCAACAAAGCAACTTCAAAAAAAAATCTACTTACAGACATTACATTCAAT
TGAACAAGATCCGTACGATGAAGATGTGGATGTGGATGGGGCAGTGGCACCAGCCCTTGAGGCGCCATGAGGCTAATCGC
TTGGAACTGCTGGGGCTTGGATAGGGATCTCGGCAGTAAAAAATTGGGAATATCTTGCCAATCTTATGTGCTCC------
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>chr6D_503
CTTCCT--------------------------------------------------------------------------
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----------------------------------------------------------------TTTGCAGATAGATTCA
TGAGC-CTACAACG-CACTTGTCCACAATAACCTGTTGGAAATCTCTAGAGTAGGGCTATGTTGTCTCCTGAGTACCCAT
TAACGTGTACCAGATTACAGATTACCTGGAGCAAGCCA-CCC-CCGTGGCCGCCGCTCCTGCCATGCTTTACACAACCGT
AAT-------TGCCACCGTTACCGCCGGCCATGCCACTCATTTTCCTCGCCGTGATCTTCAAACCAAAGCAC-AAGAAAA
GCTGCCTTGCTGCGTTTGCCAGCCTTAAACCCAAGCGTTTGACTTTGCGAAAAGCAAACCTTCACTAGCAAGCACACCAT
GGAGACGGCGACCCCTTCCTGGCCCTATATAAACTGGTCTTCCTCCGCCGTGCCGTTGCACC-AAGAGAGTCAGACCAGA
TGCGAAATCACGGTTAAGACCATAGGC-AAAATCACACGAGAGTGCG--ACCAGAGGCGAAAGCACAAGAAACCAAAGGT
GAAATCCATGGAGGCCACCACCTCGCCGACCCATCTCCTGCAGCACTGCTCCGGCAGCGATGAGCTGGGACGGTCTATGA
GGGTGTACTCCGCTGCGACCGGGAAGGTGCCGTTTGGGTGGGAGGACGAGCCGGGGAAGCCCAAGAGCCCGCCGAGGGAG
GGCGCCCTCCCGCCGTTGTGCCCTTCCCCGGCGATGCAGAGCGCACGGCTCACA---GATAAAGATAGGCGGCGGCGACA
---GAGTCTCAAGCGCCGGGCGGATCAAGGCGGCTTTGAAGGGTGCCTGCCGGTGAAGTTCCAGCTGGGGAGAGCCATGA
GGAGGTGGGACATCGTTTGCTACTTCAGAGGAGAATGATGAATGATTCTCCAGGGGCAAAC----ATTTACCTAGTGGAA
ATCAAACTATTCCTGTAAATTAACCATCTGTAAGGAATAATGACTTCTTTTTTGCCATGTTGCACCGATGATTCACCGCC
ATAGATCAATCCAATTTAGCACACAGAAACAGGTAAAATCACACGGTTGTCCTATGAAAACAATGGTACAGCAGATACGT
AGAACAGC--ATTATGATCTTCATAACTGTAATAATGATGCGGACACATTTGCATCATCAC----AAGTTCCATTCCATG
TGGTGCATGCCTGAAAAACATACTAAGATAGAAGCACAAATGT-------------------------------------
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>SNPs
-------------S---S------------S----------------------------------------S----S---
---S---------------------------------------------------------------------S--S--S
SSSSSS-SSSSSS----------------S------------S--------S--------------------S-------
----S-S-------------------SS----------------------------------S-----------------
------------------S-------S---S---S-------S-----------S-S----------------S--S---
---------S-----S-----S--------------------------------S-------------------------
----------------S------------S--------------------------------------------------
-------S--S---------------------------S-----------------------------------------
-------S-----S------------------------S--SS-------------------------------------
---S--------------------------------------------------S-------------------------
-------------------------------------S--------------------------------------S---
-------------------SS-----------------------------------------S---------S-------
---------------S------S------------------------SS-------------------------------
---------------------------------------------S-----------------S----------------
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-----------------------S-----S--------------------------------------------------
SSS---------------------------------------------S-------------------------------
---------------------------------------------S---------------SSSS---------------
--------S-------------------------------------S-------S-------------------S-----
--------------------S-----------------------------------------------S-----------
----------SS------------------S-----------------------------------------S-------
--------------------------S-------S---S-----------------------------------------
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-------------------------------------------------------------S-S----S-----------
----S--S----------------------------S-S-S------S-----------------S--------S-----
----S-----S---S-----------------------------------S--------S--S-----------------
--------S------------S----------S-S---S------S------SSS-SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS------------------------------------------------------S-----S-
------------S----------------------------S------S---------S---------------------
----------S--------------------------S-------------------S------S---------SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS
>forward_654
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--------------------------------------------------------------------------ACCCAT
TAACGTGCACCAGT------------------------------------------------------------------
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>reverse_2675
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----------------------------------ACACCGTTGGAGATCAAGCA--------------------------
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