Multiple sequence alignment - TraesCS6B01G377800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G377800 chr6B 100.000 2534 0 0 1 2534 652982633 652985166 0.000000e+00 4680.0
1 TraesCS6B01G377800 chr6B 90.426 282 27 0 1762 2043 689209744 689209463 3.080000e-99 372.0
2 TraesCS6B01G377800 chr6B 73.913 414 74 28 1148 1532 652945494 652945902 4.400000e-28 135.0
3 TraesCS6B01G377800 chr6B 100.000 31 0 0 219 249 79038720 79038690 9.790000e-05 58.4
4 TraesCS6B01G377800 chr6B 84.483 58 7 2 144 201 135411620 135411565 3.520000e-04 56.5
5 TraesCS6B01G377800 chr6D 90.063 1439 69 28 359 1752 432852074 432853483 0.000000e+00 1797.0
6 TraesCS6B01G377800 chr6D 84.363 518 28 24 2044 2534 432853509 432854000 2.300000e-125 459.0
7 TraesCS6B01G377800 chr6D 88.119 303 33 3 57 358 432851728 432852028 8.620000e-95 357.0
8 TraesCS6B01G377800 chr6D 87.179 234 14 7 285 518 432845014 432845231 4.180000e-63 252.0
9 TraesCS6B01G377800 chr6D 83.251 203 17 7 521 718 432845315 432845505 1.210000e-38 171.0
10 TraesCS6B01G377800 chr6D 73.684 418 68 31 1148 1532 432824017 432824425 9.520000e-25 124.0
11 TraesCS6B01G377800 chr6D 90.909 55 3 2 196 248 12363913 12363967 3.500000e-09 73.1
12 TraesCS6B01G377800 chr6A 89.650 1401 84 22 392 1761 578954123 578955493 0.000000e+00 1727.0
13 TraesCS6B01G377800 chr6A 82.368 397 19 22 2156 2534 578955571 578955934 5.300000e-77 298.0
14 TraesCS6B01G377800 chr6A 74.442 403 65 31 1148 1519 578942373 578942768 3.400000e-29 139.0
15 TraesCS6B01G377800 chr1B 89.761 293 28 2 1761 2052 495804247 495803956 8.560000e-100 374.0
16 TraesCS6B01G377800 chr1B 89.931 288 28 1 1760 2046 638037393 638037106 1.110000e-98 370.0
17 TraesCS6B01G377800 chr1B 90.426 282 26 1 1762 2043 687414947 687415227 1.110000e-98 370.0
18 TraesCS6B01G377800 chr1B 100.000 58 0 0 1 58 562509884 562509941 9.590000e-20 108.0
19 TraesCS6B01G377800 chr1B 97.368 38 1 0 148 185 389954911 389954948 5.850000e-07 65.8
20 TraesCS6B01G377800 chr2B 89.895 287 29 0 1760 2046 63860712 63860998 1.110000e-98 370.0
21 TraesCS6B01G377800 chr2B 89.583 288 30 0 1761 2048 649446831 649447118 1.430000e-97 366.0
22 TraesCS6B01G377800 chr2B 93.103 58 4 0 1 58 113044589 113044646 4.490000e-13 86.1
23 TraesCS6B01G377800 chr3B 90.071 282 28 0 1762 2043 17350289 17350570 1.430000e-97 366.0
24 TraesCS6B01G377800 chr3B 94.737 57 1 1 148 202 536048033 536048089 1.250000e-13 87.9
25 TraesCS6B01G377800 chr3B 95.745 47 1 1 146 192 676281274 676281229 9.720000e-10 75.0
26 TraesCS6B01G377800 chr7B 89.310 290 30 1 1754 2043 31801076 31801364 1.850000e-96 363.0
27 TraesCS6B01G377800 chr7B 87.461 319 35 5 1744 2060 709759094 709759409 1.850000e-96 363.0
28 TraesCS6B01G377800 chr7B 100.000 57 0 0 1 57 644028702 644028758 3.450000e-19 106.0
29 TraesCS6B01G377800 chr5B 93.333 60 4 0 1 60 372156870 372156811 3.470000e-14 89.8
30 TraesCS6B01G377800 chr5B 92.982 57 4 0 1 57 116685330 116685274 1.620000e-12 84.2
31 TraesCS6B01G377800 chr3D 93.103 58 4 0 1 58 606928858 606928915 4.490000e-13 86.1
32 TraesCS6B01G377800 chr2A 91.228 57 5 0 1 57 710479783 710479727 7.520000e-11 78.7
33 TraesCS6B01G377800 chr2A 100.000 39 0 0 147 185 768258291 768258253 3.500000e-09 73.1
34 TraesCS6B01G377800 chr5D 93.878 49 2 1 144 192 386746231 386746184 3.500000e-09 73.1
35 TraesCS6B01G377800 chr5D 100.000 33 0 0 217 249 370831377 370831345 7.570000e-06 62.1
36 TraesCS6B01G377800 chr4B 91.071 56 1 2 148 203 558725780 558725831 3.500000e-09 73.1
37 TraesCS6B01G377800 chr1D 95.349 43 2 0 6 48 30026869 30026827 4.520000e-08 69.4
38 TraesCS6B01G377800 chr2D 95.122 41 2 0 148 188 606046019 606045979 5.850000e-07 65.8
39 TraesCS6B01G377800 chr7D 100.000 31 0 0 219 249 219092674 219092644 9.790000e-05 58.4
40 TraesCS6B01G377800 chr7D 90.698 43 3 1 213 255 291183029 291183070 3.520000e-04 56.5
41 TraesCS6B01G377800 chr7A 96.970 33 1 0 216 248 20386222 20386254 3.520000e-04 56.5
42 TraesCS6B01G377800 chr4D 94.595 37 1 1 219 255 236617120 236617085 3.520000e-04 56.5
43 TraesCS6B01G377800 chr4A 94.286 35 2 0 222 256 558846303 558846269 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G377800 chr6B 652982633 652985166 2533 False 4680.0 4680 100.000 1 2534 1 chr6B.!!$F2 2533
1 TraesCS6B01G377800 chr6D 432851728 432854000 2272 False 871.0 1797 87.515 57 2534 3 chr6D.!!$F4 2477
2 TraesCS6B01G377800 chr6A 578954123 578955934 1811 False 1012.5 1727 86.009 392 2534 2 chr6A.!!$F2 2142

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
720 780 0.038526 ACCAGCCTACAACGAACGAG 60.039 55.0 0.14 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2274 2397 0.539438 CCAGCCACCTAAAAGCCACA 60.539 55.0 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.101770 GACCGGCCGAGTCGTTAG 59.898 66.667 30.73 9.82 0.00 2.34
30 31 4.125695 ACCGGCCGAGTCGTTAGC 62.126 66.667 30.73 7.75 0.00 3.09
31 32 4.867599 CCGGCCGAGTCGTTAGCC 62.868 72.222 30.73 18.13 42.18 3.93
33 34 4.867599 GGCCGAGTCGTTAGCCGG 62.868 72.222 14.26 0.00 44.34 6.13
34 35 4.125695 GCCGAGTCGTTAGCCGGT 62.126 66.667 12.31 0.00 43.51 5.28
35 36 2.101770 CCGAGTCGTTAGCCGGTC 59.898 66.667 12.31 0.00 37.40 4.79
36 37 2.277120 CGAGTCGTTAGCCGGTCG 60.277 66.667 1.90 3.66 37.19 4.79
37 38 2.743752 CGAGTCGTTAGCCGGTCGA 61.744 63.158 1.90 6.20 42.41 4.20
39 40 2.202531 GTCGTTAGCCGGTCGACC 60.203 66.667 25.28 25.28 45.08 4.79
53 54 3.747976 GACCGGCCGCAAGCATTT 61.748 61.111 22.85 0.00 46.50 2.32
54 55 3.683587 GACCGGCCGCAAGCATTTC 62.684 63.158 22.85 1.03 46.50 2.17
55 56 4.496927 CCGGCCGCAAGCATTTCC 62.497 66.667 22.85 0.00 46.50 3.13
61 62 1.269257 GCCGCAAGCATTTCCCTAATC 60.269 52.381 0.00 0.00 42.97 1.75
64 65 2.032549 CGCAAGCATTTCCCTAATCTCG 60.033 50.000 0.00 0.00 0.00 4.04
78 79 5.333645 CCCTAATCTCGATGCAGAAAAATCG 60.334 44.000 0.00 0.00 45.46 3.34
84 85 2.698472 GATGCAGAAAAATCGCGAGAC 58.302 47.619 16.66 3.85 46.97 3.36
86 87 1.870402 TGCAGAAAAATCGCGAGACAA 59.130 42.857 16.66 0.00 46.97 3.18
88 89 2.349438 GCAGAAAAATCGCGAGACAACA 60.349 45.455 16.66 0.00 46.97 3.33
95 97 3.627732 ATCGCGAGACAACATAGGTAG 57.372 47.619 16.66 0.00 46.97 3.18
105 107 7.425224 AGACAACATAGGTAGAAATGCTAGT 57.575 36.000 0.00 0.00 0.00 2.57
109 111 6.240549 ACATAGGTAGAAATGCTAGTGCTT 57.759 37.500 0.00 0.00 40.48 3.91
117 119 4.226168 AGAAATGCTAGTGCTTTCTACCCT 59.774 41.667 11.97 0.00 40.87 4.34
119 121 2.536066 TGCTAGTGCTTTCTACCCTCA 58.464 47.619 0.00 0.00 40.48 3.86
126 128 6.909550 AGTGCTTTCTACCCTCATCTATAG 57.090 41.667 0.00 0.00 0.00 1.31
139 141 7.093112 ACCCTCATCTATAGGCAAGATTATCAC 60.093 40.741 0.00 0.00 31.22 3.06
141 143 7.980662 CCTCATCTATAGGCAAGATTATCACTG 59.019 40.741 0.00 0.00 31.22 3.66
155 157 3.618690 ATCACTGCAAACTACTCCCTC 57.381 47.619 0.00 0.00 0.00 4.30
156 158 1.623811 TCACTGCAAACTACTCCCTCC 59.376 52.381 0.00 0.00 0.00 4.30
161 163 2.074576 GCAAACTACTCCCTCCGTTTC 58.925 52.381 0.00 0.00 0.00 2.78
171 173 9.151177 ACTACTCCCTCCGTTTCATAATATAAA 57.849 33.333 0.00 0.00 0.00 1.40
174 176 9.117183 ACTCCCTCCGTTTCATAATATAAAAAC 57.883 33.333 0.00 0.00 0.00 2.43
252 254 1.132500 GGGATGGAGGGAGTAACCTG 58.868 60.000 0.00 0.00 42.10 4.00
263 265 3.434641 GGGAGTAACCTGTTTAGTTTCGC 59.565 47.826 0.00 0.00 38.98 4.70
330 332 3.420893 CCAATCTGAGTTGTAAAGGGCA 58.579 45.455 0.00 0.00 0.00 5.36
383 430 2.482490 GCCATTCCCTGTTGATTCATGC 60.482 50.000 0.00 0.00 0.00 4.06
452 499 2.219325 CTGTCTGAGCGACCACCCTC 62.219 65.000 0.00 0.00 42.13 4.30
477 524 1.452110 TTGAATGGCACTCCGTGATG 58.548 50.000 0.00 0.00 35.23 3.07
519 566 3.631250 CCATTTACCAGTGCCTACCATT 58.369 45.455 0.00 0.00 0.00 3.16
523 570 5.968676 TTTACCAGTGCCTACCATTATCT 57.031 39.130 0.00 0.00 0.00 1.98
528 575 5.080337 CCAGTGCCTACCATTATCTAGAGA 58.920 45.833 0.00 0.00 0.00 3.10
529 576 5.540337 CCAGTGCCTACCATTATCTAGAGAA 59.460 44.000 1.60 1.60 0.00 2.87
530 577 6.212388 CCAGTGCCTACCATTATCTAGAGAAT 59.788 42.308 6.78 6.78 0.00 2.40
531 578 7.256475 CCAGTGCCTACCATTATCTAGAGAATT 60.256 40.741 9.90 0.05 0.00 2.17
572 629 7.699391 CCAAAATCATTTGTGTACATGCTCTAG 59.301 37.037 0.00 0.00 43.59 2.43
573 630 7.928307 AAATCATTTGTGTACATGCTCTAGT 57.072 32.000 0.00 0.00 0.00 2.57
574 631 6.915544 ATCATTTGTGTACATGCTCTAGTG 57.084 37.500 0.00 0.00 0.00 2.74
575 632 4.631377 TCATTTGTGTACATGCTCTAGTGC 59.369 41.667 9.86 9.86 0.00 4.40
576 633 3.961480 TTGTGTACATGCTCTAGTGCT 57.039 42.857 17.08 0.72 0.00 4.40
577 634 3.510388 TGTGTACATGCTCTAGTGCTC 57.490 47.619 17.08 4.56 0.00 4.26
578 635 3.092301 TGTGTACATGCTCTAGTGCTCT 58.908 45.455 17.08 2.92 0.00 4.09
579 636 4.270008 TGTGTACATGCTCTAGTGCTCTA 58.730 43.478 17.08 0.00 0.00 2.43
619 676 4.579869 AGCGGATGAACAGTTGAACTATT 58.420 39.130 0.00 0.00 0.00 1.73
637 694 9.102757 TGAACTATTAATTCAGAGACAAGATGC 57.897 33.333 0.00 0.00 32.34 3.91
644 704 6.690194 ATTCAGAGACAAGATGCCAATTAC 57.310 37.500 0.00 0.00 0.00 1.89
655 715 6.759497 AGATGCCAATTACTACTTGGAAAC 57.241 37.500 8.95 0.00 44.95 2.78
693 753 0.443478 TGATCAACGTGCTCAATGCG 59.557 50.000 0.00 0.00 46.63 4.73
720 780 0.038526 ACCAGCCTACAACGAACGAG 60.039 55.000 0.14 0.00 0.00 4.18
728 788 4.171005 CCTACAACGAACGAGCTAATCAA 58.829 43.478 0.14 0.00 0.00 2.57
730 790 4.842139 ACAACGAACGAGCTAATCAATC 57.158 40.909 0.14 0.00 0.00 2.67
733 793 4.111375 ACGAACGAGCTAATCAATCAGT 57.889 40.909 0.14 0.00 0.00 3.41
749 809 7.465353 TCAATCAGTAGCAATTTGATTCCAA 57.535 32.000 0.00 0.00 38.98 3.53
750 810 7.894708 TCAATCAGTAGCAATTTGATTCCAAA 58.105 30.769 0.00 0.00 45.28 3.28
770 833 6.483307 TCCAAATCGGAGCACTAATAATTCAG 59.517 38.462 0.00 0.00 39.64 3.02
940 1014 2.330924 GATTTCCTGCCCTCCCTCCG 62.331 65.000 0.00 0.00 0.00 4.63
984 1067 0.460987 GTCCGTAAGCAGAGCAGCAT 60.461 55.000 0.00 0.00 36.85 3.79
999 1082 2.677228 CATCACCACCCACCTCCC 59.323 66.667 0.00 0.00 0.00 4.30
1020 1112 0.178903 TGGCCTCCTCCACTTGTACT 60.179 55.000 3.32 0.00 0.00 2.73
1086 1178 3.164011 GCGTTCCTCGTCGTCGTG 61.164 66.667 1.33 0.00 42.13 4.35
1088 1180 2.641559 GTTCCTCGTCGTCGTGGT 59.358 61.111 19.58 0.00 46.59 4.16
1089 1181 1.728426 GTTCCTCGTCGTCGTGGTG 60.728 63.158 19.58 0.00 46.59 4.17
1463 1555 1.226974 CCATGGTCGAGTGCTACGG 60.227 63.158 2.57 0.00 0.00 4.02
1538 1630 1.070758 CATGCGCCCCTACTGAATACT 59.929 52.381 4.18 0.00 0.00 2.12
1589 1703 4.831307 CCTCGCCGGTCTTCGTCG 62.831 72.222 1.90 0.00 41.91 5.12
1594 1708 4.421479 CCGGTCTTCGTCGCAGCT 62.421 66.667 0.00 0.00 37.11 4.24
1660 1775 4.458397 AGCACTATCTTGATGTCCCATTG 58.542 43.478 0.00 0.00 0.00 2.82
1687 1802 2.558359 TGCTCATCGAGAGTTCAAGACA 59.442 45.455 11.75 0.36 46.47 3.41
1717 1832 1.390123 CGATGCCACGAGTGTACAAAG 59.610 52.381 0.00 0.00 35.09 2.77
1752 1869 5.714806 TGCTATATACTACTGGTGCTGCATA 59.285 40.000 5.27 0.00 0.00 3.14
1762 1883 9.658799 ACTACTGGTGCTGCATATTATTTATAG 57.341 33.333 5.27 1.96 0.00 1.31
1763 1884 9.875691 CTACTGGTGCTGCATATTATTTATAGA 57.124 33.333 5.27 0.00 0.00 1.98
1764 1885 8.783833 ACTGGTGCTGCATATTATTTATAGAG 57.216 34.615 5.27 0.00 0.00 2.43
1766 1887 7.112122 TGGTGCTGCATATTATTTATAGAGGG 58.888 38.462 5.27 0.00 0.00 4.30
1767 1888 7.112779 GGTGCTGCATATTATTTATAGAGGGT 58.887 38.462 5.27 0.00 0.00 4.34
1768 1889 7.066284 GGTGCTGCATATTATTTATAGAGGGTG 59.934 40.741 5.27 0.00 0.00 4.61
1769 1890 7.607991 GTGCTGCATATTATTTATAGAGGGTGT 59.392 37.037 5.27 0.00 0.00 4.16
1770 1891 8.163408 TGCTGCATATTATTTATAGAGGGTGTT 58.837 33.333 0.00 0.00 0.00 3.32
1771 1892 9.014297 GCTGCATATTATTTATAGAGGGTGTTT 57.986 33.333 0.00 0.00 0.00 2.83
1773 1894 9.860650 TGCATATTATTTATAGAGGGTGTTTGT 57.139 29.630 0.00 0.00 0.00 2.83
1780 1901 7.519032 TTTATAGAGGGTGTTTGTTTTCAGG 57.481 36.000 0.00 0.00 0.00 3.86
1781 1902 3.662759 AGAGGGTGTTTGTTTTCAGGA 57.337 42.857 0.00 0.00 0.00 3.86
1782 1903 3.976015 AGAGGGTGTTTGTTTTCAGGAA 58.024 40.909 0.00 0.00 0.00 3.36
1783 1904 3.699538 AGAGGGTGTTTGTTTTCAGGAAC 59.300 43.478 0.00 0.00 0.00 3.62
1784 1905 3.699538 GAGGGTGTTTGTTTTCAGGAACT 59.300 43.478 0.00 0.00 43.88 3.01
1785 1906 4.093743 AGGGTGTTTGTTTTCAGGAACTT 58.906 39.130 0.00 0.00 34.60 2.66
1786 1907 5.265989 AGGGTGTTTGTTTTCAGGAACTTA 58.734 37.500 0.00 0.00 34.60 2.24
1787 1908 5.897250 AGGGTGTTTGTTTTCAGGAACTTAT 59.103 36.000 0.00 0.00 34.60 1.73
1788 1909 6.382859 AGGGTGTTTGTTTTCAGGAACTTATT 59.617 34.615 0.00 0.00 34.60 1.40
1789 1910 6.478673 GGGTGTTTGTTTTCAGGAACTTATTG 59.521 38.462 0.00 0.00 34.60 1.90
1790 1911 7.262048 GGTGTTTGTTTTCAGGAACTTATTGA 58.738 34.615 0.00 0.00 34.60 2.57
1791 1912 7.222031 GGTGTTTGTTTTCAGGAACTTATTGAC 59.778 37.037 0.00 0.00 34.60 3.18
1792 1913 7.973944 GTGTTTGTTTTCAGGAACTTATTGACT 59.026 33.333 0.00 0.00 34.60 3.41
1793 1914 8.527810 TGTTTGTTTTCAGGAACTTATTGACTT 58.472 29.630 0.00 0.00 34.60 3.01
1823 1944 9.886132 GACTTAAAAATGTCCCTATAAGTCTCA 57.114 33.333 13.44 0.00 42.68 3.27
1831 1952 7.598759 TGTCCCTATAAGTCTCATCTAAACC 57.401 40.000 0.00 0.00 0.00 3.27
1832 1953 7.130099 TGTCCCTATAAGTCTCATCTAAACCA 58.870 38.462 0.00 0.00 0.00 3.67
1833 1954 7.622081 TGTCCCTATAAGTCTCATCTAAACCAA 59.378 37.037 0.00 0.00 0.00 3.67
1834 1955 8.483758 GTCCCTATAAGTCTCATCTAAACCAAA 58.516 37.037 0.00 0.00 0.00 3.28
1835 1956 8.483758 TCCCTATAAGTCTCATCTAAACCAAAC 58.516 37.037 0.00 0.00 0.00 2.93
1836 1957 8.265055 CCCTATAAGTCTCATCTAAACCAAACA 58.735 37.037 0.00 0.00 0.00 2.83
1837 1958 9.319143 CCTATAAGTCTCATCTAAACCAAACAG 57.681 37.037 0.00 0.00 0.00 3.16
1838 1959 9.319143 CTATAAGTCTCATCTAAACCAAACAGG 57.681 37.037 0.00 0.00 45.67 4.00
1839 1960 5.825593 AGTCTCATCTAAACCAAACAGGA 57.174 39.130 0.00 0.00 41.22 3.86
1840 1961 6.380079 AGTCTCATCTAAACCAAACAGGAT 57.620 37.500 0.00 0.00 41.22 3.24
1841 1962 6.176183 AGTCTCATCTAAACCAAACAGGATG 58.824 40.000 0.00 0.00 46.00 3.51
1842 1963 5.355350 GTCTCATCTAAACCAAACAGGATGG 59.645 44.000 0.00 0.00 43.62 3.51
1843 1964 5.250543 TCTCATCTAAACCAAACAGGATGGA 59.749 40.000 0.00 0.00 43.62 3.41
1844 1965 6.069440 TCTCATCTAAACCAAACAGGATGGAT 60.069 38.462 0.00 0.00 43.62 3.41
1845 1966 6.493166 TCATCTAAACCAAACAGGATGGATT 58.507 36.000 0.00 0.00 43.62 3.01
1846 1967 6.953520 TCATCTAAACCAAACAGGATGGATTT 59.046 34.615 0.00 0.14 43.62 2.17
1847 1968 8.112822 TCATCTAAACCAAACAGGATGGATTTA 58.887 33.333 0.00 1.20 43.62 1.40
1848 1969 8.917088 CATCTAAACCAAACAGGATGGATTTAT 58.083 33.333 0.00 0.00 43.62 1.40
1850 1971 9.627123 TCTAAACCAAACAGGATGGATTTATAG 57.373 33.333 0.00 0.00 43.62 1.31
1851 1972 7.660030 AAACCAAACAGGATGGATTTATAGG 57.340 36.000 0.00 0.00 43.62 2.57
1852 1973 5.705400 ACCAAACAGGATGGATTTATAGGG 58.295 41.667 0.00 0.00 43.62 3.53
1853 1974 5.435041 ACCAAACAGGATGGATTTATAGGGA 59.565 40.000 0.00 0.00 43.62 4.20
1854 1975 5.770162 CCAAACAGGATGGATTTATAGGGAC 59.230 44.000 0.00 0.00 43.62 4.46
1855 1976 6.410853 CCAAACAGGATGGATTTATAGGGACT 60.411 42.308 0.00 0.00 43.62 3.85
1856 1977 6.848562 AACAGGATGGATTTATAGGGACTT 57.151 37.500 0.00 0.00 43.62 3.01
1857 1978 7.947782 AACAGGATGGATTTATAGGGACTTA 57.052 36.000 0.00 0.00 43.62 2.24
1858 1979 7.947782 ACAGGATGGATTTATAGGGACTTAA 57.052 36.000 0.00 0.00 43.62 1.85
1859 1980 8.525729 ACAGGATGGATTTATAGGGACTTAAT 57.474 34.615 0.00 0.00 43.62 1.40
1860 1981 8.386264 ACAGGATGGATTTATAGGGACTTAATG 58.614 37.037 0.00 0.00 43.62 1.90
1861 1982 8.386264 CAGGATGGATTTATAGGGACTTAATGT 58.614 37.037 0.00 0.00 41.75 2.71
1862 1983 8.386264 AGGATGGATTTATAGGGACTTAATGTG 58.614 37.037 0.00 0.00 41.75 3.21
1863 1984 7.121315 GGATGGATTTATAGGGACTTAATGTGC 59.879 40.741 0.00 0.00 41.75 4.57
1864 1985 5.995282 TGGATTTATAGGGACTTAATGTGCG 59.005 40.000 0.00 0.00 41.75 5.34
1865 1986 5.106673 GGATTTATAGGGACTTAATGTGCGC 60.107 44.000 0.00 0.00 41.75 6.09
1866 1987 4.409718 TTATAGGGACTTAATGTGCGCA 57.590 40.909 5.66 5.66 41.75 6.09
1867 1988 3.492102 ATAGGGACTTAATGTGCGCAT 57.508 42.857 15.91 7.01 41.75 4.73
1868 1989 2.128771 AGGGACTTAATGTGCGCATT 57.871 45.000 27.15 27.15 46.14 3.56
1869 1990 2.446435 AGGGACTTAATGTGCGCATTT 58.554 42.857 28.90 12.85 44.17 2.32
1870 1991 2.164219 AGGGACTTAATGTGCGCATTTG 59.836 45.455 28.90 22.57 44.17 2.32
1871 1992 2.529151 GGACTTAATGTGCGCATTTGG 58.471 47.619 28.90 22.16 42.19 3.28
1872 1993 2.529151 GACTTAATGTGCGCATTTGGG 58.471 47.619 28.90 20.03 42.19 4.12
1873 1994 2.163412 GACTTAATGTGCGCATTTGGGA 59.837 45.455 28.90 9.84 42.19 4.37
1874 1995 2.760092 ACTTAATGTGCGCATTTGGGAT 59.240 40.909 28.90 7.92 42.19 3.85
1875 1996 3.195396 ACTTAATGTGCGCATTTGGGATT 59.805 39.130 28.90 7.98 42.19 3.01
1876 1997 2.766345 AATGTGCGCATTTGGGATTT 57.234 40.000 19.61 0.00 42.19 2.17
1877 1998 3.883830 AATGTGCGCATTTGGGATTTA 57.116 38.095 19.61 0.00 42.19 1.40
1878 1999 4.405116 AATGTGCGCATTTGGGATTTAT 57.595 36.364 19.61 0.00 42.19 1.40
1879 2000 3.162202 TGTGCGCATTTGGGATTTATG 57.838 42.857 15.91 0.00 0.00 1.90
1880 2001 2.159128 TGTGCGCATTTGGGATTTATGG 60.159 45.455 15.91 0.00 0.00 2.74
1881 2002 2.100584 GTGCGCATTTGGGATTTATGGA 59.899 45.455 15.91 0.00 0.00 3.41
1882 2003 2.762887 TGCGCATTTGGGATTTATGGAA 59.237 40.909 5.66 0.00 0.00 3.53
1883 2004 3.387374 TGCGCATTTGGGATTTATGGAAT 59.613 39.130 5.66 0.00 0.00 3.01
1884 2005 4.586421 TGCGCATTTGGGATTTATGGAATA 59.414 37.500 5.66 0.00 0.00 1.75
1885 2006 5.069648 TGCGCATTTGGGATTTATGGAATAA 59.930 36.000 5.66 0.00 36.92 1.40
1886 2007 5.634859 GCGCATTTGGGATTTATGGAATAAG 59.365 40.000 0.30 0.00 40.40 1.73
1887 2008 6.516527 GCGCATTTGGGATTTATGGAATAAGA 60.517 38.462 0.30 0.00 40.40 2.10
1888 2009 6.863126 CGCATTTGGGATTTATGGAATAAGAC 59.137 38.462 0.00 0.00 40.40 3.01
1889 2010 7.255590 CGCATTTGGGATTTATGGAATAAGACT 60.256 37.037 0.00 0.00 40.40 3.24
1890 2011 8.424133 GCATTTGGGATTTATGGAATAAGACTT 58.576 33.333 0.00 0.00 40.40 3.01
1893 2014 9.540538 TTTGGGATTTATGGAATAAGACTTTCA 57.459 29.630 0.00 0.00 40.40 2.69
1894 2015 9.540538 TTGGGATTTATGGAATAAGACTTTCAA 57.459 29.630 0.00 0.00 40.40 2.69
1895 2016 9.189156 TGGGATTTATGGAATAAGACTTTCAAG 57.811 33.333 0.00 0.00 40.40 3.02
1896 2017 8.633561 GGGATTTATGGAATAAGACTTTCAAGG 58.366 37.037 0.00 0.00 40.40 3.61
1897 2018 9.408648 GGATTTATGGAATAAGACTTTCAAGGA 57.591 33.333 0.00 0.00 40.40 3.36
1899 2020 8.807948 TTTATGGAATAAGACTTTCAAGGAGG 57.192 34.615 0.00 0.00 40.40 4.30
1900 2021 5.179452 TGGAATAAGACTTTCAAGGAGGG 57.821 43.478 0.00 0.00 0.00 4.30
1901 2022 4.849810 TGGAATAAGACTTTCAAGGAGGGA 59.150 41.667 0.00 0.00 0.00 4.20
1902 2023 5.186942 GGAATAAGACTTTCAAGGAGGGAC 58.813 45.833 0.00 0.00 0.00 4.46
1904 2025 6.455690 AATAAGACTTTCAAGGAGGGACTT 57.544 37.500 0.00 0.00 41.55 3.01
1905 2026 7.311109 GGAATAAGACTTTCAAGGAGGGACTTA 60.311 40.741 0.00 0.00 41.55 2.24
1906 2027 7.757242 ATAAGACTTTCAAGGAGGGACTTAT 57.243 36.000 0.00 0.00 41.55 1.73
1907 2028 8.855804 ATAAGACTTTCAAGGAGGGACTTATA 57.144 34.615 0.00 0.00 41.55 0.98
1908 2029 6.800072 AGACTTTCAAGGAGGGACTTATAG 57.200 41.667 0.00 0.00 41.55 1.31
1909 2030 5.663556 AGACTTTCAAGGAGGGACTTATAGG 59.336 44.000 0.00 0.00 41.55 2.57
1910 2031 4.722279 ACTTTCAAGGAGGGACTTATAGGG 59.278 45.833 0.00 0.00 41.55 3.53
1911 2032 4.637288 TTCAAGGAGGGACTTATAGGGA 57.363 45.455 0.00 0.00 41.55 4.20
1912 2033 3.924922 TCAAGGAGGGACTTATAGGGAC 58.075 50.000 0.00 0.00 41.55 4.46
1913 2034 3.536434 TCAAGGAGGGACTTATAGGGACT 59.464 47.826 0.00 0.00 41.55 3.85
1914 2035 4.015541 TCAAGGAGGGACTTATAGGGACTT 60.016 45.833 0.00 0.00 41.55 3.01
1915 2036 5.197189 TCAAGGAGGGACTTATAGGGACTTA 59.803 44.000 0.00 0.00 41.55 2.24
1916 2037 5.970692 AGGAGGGACTTATAGGGACTTAT 57.029 43.478 0.00 0.00 41.55 1.73
1917 2038 7.075915 TCAAGGAGGGACTTATAGGGACTTATA 59.924 40.741 0.00 0.00 41.55 0.98
1918 2039 7.046891 AGGAGGGACTTATAGGGACTTATAG 57.953 44.000 0.00 0.00 41.55 1.31
1919 2040 6.571180 AGGAGGGACTTATAGGGACTTATAGT 59.429 42.308 0.00 0.00 41.55 2.12
1920 2041 7.076566 AGGAGGGACTTATAGGGACTTATAGTT 59.923 40.741 0.00 0.00 41.55 2.24
1921 2042 7.178805 GGAGGGACTTATAGGGACTTATAGTTG 59.821 44.444 0.00 0.00 41.55 3.16
1922 2043 7.602868 AGGGACTTATAGGGACTTATAGTTGT 58.397 38.462 0.00 0.00 34.75 3.32
1923 2044 8.740512 AGGGACTTATAGGGACTTATAGTTGTA 58.259 37.037 0.00 0.00 34.75 2.41
1924 2045 9.372189 GGGACTTATAGGGACTTATAGTTGTAA 57.628 37.037 0.00 0.00 41.75 2.41
1933 2054 9.448587 AGGGACTTATAGTTGTAATATGGTCTT 57.551 33.333 0.00 0.00 27.25 3.01
1965 2086 7.101700 ACTTATAAGTCCTAGAAACCAAACGG 58.898 38.462 12.50 0.00 32.86 4.44
1966 2087 2.853235 AGTCCTAGAAACCAAACGGG 57.147 50.000 0.00 0.00 44.81 5.28
1975 2096 2.761160 CCAAACGGGTAGGGGCTT 59.239 61.111 0.00 0.00 0.00 4.35
1976 2097 1.076014 CCAAACGGGTAGGGGCTTT 59.924 57.895 0.00 0.00 0.00 3.51
1977 2098 0.541063 CCAAACGGGTAGGGGCTTTT 60.541 55.000 0.00 0.00 0.00 2.27
1978 2099 1.334160 CAAACGGGTAGGGGCTTTTT 58.666 50.000 0.00 0.00 0.00 1.94
1979 2100 2.516906 CAAACGGGTAGGGGCTTTTTA 58.483 47.619 0.00 0.00 0.00 1.52
1980 2101 2.892215 CAAACGGGTAGGGGCTTTTTAA 59.108 45.455 0.00 0.00 0.00 1.52
1981 2102 2.976068 ACGGGTAGGGGCTTTTTAAA 57.024 45.000 0.00 0.00 0.00 1.52
1982 2103 2.799017 ACGGGTAGGGGCTTTTTAAAG 58.201 47.619 0.00 0.00 39.03 1.85
1983 2104 2.376181 ACGGGTAGGGGCTTTTTAAAGA 59.624 45.455 6.41 0.00 38.28 2.52
1984 2105 2.751259 CGGGTAGGGGCTTTTTAAAGAC 59.249 50.000 6.41 2.93 43.47 3.01
1985 2106 3.560668 CGGGTAGGGGCTTTTTAAAGACT 60.561 47.826 7.92 4.49 43.70 3.24
1986 2107 4.413760 GGGTAGGGGCTTTTTAAAGACTT 58.586 43.478 7.92 0.61 43.70 3.01
1987 2108 4.219944 GGGTAGGGGCTTTTTAAAGACTTG 59.780 45.833 7.92 0.00 43.70 3.16
1988 2109 4.219944 GGTAGGGGCTTTTTAAAGACTTGG 59.780 45.833 7.92 0.00 43.70 3.61
1989 2110 3.239449 AGGGGCTTTTTAAAGACTTGGG 58.761 45.455 7.92 0.00 43.70 4.12
1990 2111 3.116900 AGGGGCTTTTTAAAGACTTGGGA 60.117 43.478 7.92 0.00 43.70 4.37
1991 2112 3.006537 GGGGCTTTTTAAAGACTTGGGAC 59.993 47.826 7.92 0.00 43.70 4.46
1992 2113 3.895656 GGGCTTTTTAAAGACTTGGGACT 59.104 43.478 7.92 0.00 43.70 3.85
1993 2114 4.344102 GGGCTTTTTAAAGACTTGGGACTT 59.656 41.667 7.92 0.00 43.70 3.01
1994 2115 5.537295 GGGCTTTTTAAAGACTTGGGACTTA 59.463 40.000 7.92 0.00 43.70 2.24
1995 2116 6.210784 GGGCTTTTTAAAGACTTGGGACTTAT 59.789 38.462 7.92 0.00 43.70 1.73
1996 2117 7.395206 GGGCTTTTTAAAGACTTGGGACTTATA 59.605 37.037 7.92 0.00 43.70 0.98
1997 2118 8.799367 GGCTTTTTAAAGACTTGGGACTTATAA 58.201 33.333 6.41 0.00 40.95 0.98
2005 2126 8.794335 AAGACTTGGGACTTATAATTTGAGAC 57.206 34.615 0.00 0.00 0.00 3.36
2006 2127 8.152023 AGACTTGGGACTTATAATTTGAGACT 57.848 34.615 0.00 0.00 0.00 3.24
2007 2128 9.268282 AGACTTGGGACTTATAATTTGAGACTA 57.732 33.333 0.00 0.00 0.00 2.59
2008 2129 9.315525 GACTTGGGACTTATAATTTGAGACTAC 57.684 37.037 0.00 0.00 0.00 2.73
2009 2130 8.822805 ACTTGGGACTTATAATTTGAGACTACA 58.177 33.333 0.00 0.00 0.00 2.74
2010 2131 9.667107 CTTGGGACTTATAATTTGAGACTACAA 57.333 33.333 0.00 0.00 0.00 2.41
2035 2156 8.950007 AAAAATCCTAGGAGTTATGAACCAAA 57.050 30.769 23.94 0.00 31.87 3.28
2036 2157 7.939784 AAATCCTAGGAGTTATGAACCAAAC 57.060 36.000 22.54 0.00 30.25 2.93
2037 2158 6.636454 ATCCTAGGAGTTATGAACCAAACA 57.364 37.500 18.34 0.00 0.00 2.83
2038 2159 6.049955 TCCTAGGAGTTATGAACCAAACAG 57.950 41.667 7.62 0.00 0.00 3.16
2039 2160 5.045869 TCCTAGGAGTTATGAACCAAACAGG 60.046 44.000 7.62 0.00 45.67 4.00
2040 2161 4.034285 AGGAGTTATGAACCAAACAGGG 57.966 45.455 0.00 0.00 43.89 4.45
2041 2162 2.492088 GGAGTTATGAACCAAACAGGGC 59.508 50.000 0.00 0.00 43.89 5.19
2042 2163 2.492088 GAGTTATGAACCAAACAGGGCC 59.508 50.000 0.00 0.00 43.89 5.80
2064 2185 5.628200 GCCATATACTCCTGTTGTGGTTACA 60.628 44.000 0.00 0.00 34.31 2.41
2094 2215 6.932356 AATGTGAAATGAATCGTGAGCTAT 57.068 33.333 0.00 0.00 0.00 2.97
2102 2223 6.791887 ATGAATCGTGAGCTATGTATTTGG 57.208 37.500 0.00 0.00 0.00 3.28
2120 2243 5.726980 TTTGGCTGCTCTGTCAAATAAAT 57.273 34.783 0.00 0.00 36.73 1.40
2143 2266 1.839424 AGGCATTCCTCCCTTTTTCG 58.161 50.000 0.00 0.00 38.72 3.46
2144 2267 0.173481 GGCATTCCTCCCTTTTTCGC 59.827 55.000 0.00 0.00 0.00 4.70
2145 2268 1.177401 GCATTCCTCCCTTTTTCGCT 58.823 50.000 0.00 0.00 0.00 4.93
2146 2269 1.546029 GCATTCCTCCCTTTTTCGCTT 59.454 47.619 0.00 0.00 0.00 4.68
2147 2270 2.752903 GCATTCCTCCCTTTTTCGCTTA 59.247 45.455 0.00 0.00 0.00 3.09
2235 2358 5.743636 AGAGAAAGAGAAGAAGACAGCAT 57.256 39.130 0.00 0.00 0.00 3.79
2261 2384 0.540923 AGGAGAATGGTGAGCTGCTC 59.459 55.000 22.38 22.38 0.00 4.26
2271 2394 1.321474 TGAGCTGCTCACCCAAAAAG 58.679 50.000 27.35 0.00 35.39 2.27
2272 2395 1.322442 GAGCTGCTCACCCAAAAAGT 58.678 50.000 24.02 0.00 0.00 2.66
2273 2396 1.268079 GAGCTGCTCACCCAAAAAGTC 59.732 52.381 24.02 0.00 0.00 3.01
2274 2397 1.133668 AGCTGCTCACCCAAAAAGTCT 60.134 47.619 0.00 0.00 0.00 3.24
2336 2478 1.081442 TGAGCTGTGTACGTGAGCG 60.081 57.895 0.00 0.00 44.93 5.03
2487 2643 1.742761 CAGTTGGAATCCGATGCTGT 58.257 50.000 0.00 0.00 0.00 4.40
2489 2645 0.099436 GTTGGAATCCGATGCTGTGC 59.901 55.000 0.00 0.00 0.00 4.57
2490 2646 1.031571 TTGGAATCCGATGCTGTGCC 61.032 55.000 0.00 0.00 0.00 5.01
2521 2682 0.106469 GCTCCTTCAATTCCCCTCCC 60.106 60.000 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.101770 CTAACGACTCGGCCGGTC 59.898 66.667 27.83 27.38 0.00 4.79
13 14 4.125695 GCTAACGACTCGGCCGGT 62.126 66.667 27.83 22.07 0.00 5.28
14 15 4.867599 GGCTAACGACTCGGCCGG 62.868 72.222 27.83 18.67 35.08 6.13
36 37 3.683587 GAAATGCTTGCGGCCGGTC 62.684 63.158 29.38 12.09 40.92 4.79
37 38 3.747976 GAAATGCTTGCGGCCGGT 61.748 61.111 29.38 0.00 40.92 5.28
38 39 4.496927 GGAAATGCTTGCGGCCGG 62.497 66.667 29.38 11.90 40.92 6.13
39 40 4.496927 GGGAAATGCTTGCGGCCG 62.497 66.667 24.05 24.05 40.92 6.13
40 41 1.319614 TTAGGGAAATGCTTGCGGCC 61.320 55.000 0.00 0.00 40.92 6.13
41 42 0.746659 ATTAGGGAAATGCTTGCGGC 59.253 50.000 0.00 0.00 42.22 6.53
42 43 2.291741 GAGATTAGGGAAATGCTTGCGG 59.708 50.000 0.00 0.00 0.00 5.69
43 44 2.032549 CGAGATTAGGGAAATGCTTGCG 60.033 50.000 0.00 0.00 0.00 4.85
44 45 3.206150 TCGAGATTAGGGAAATGCTTGC 58.794 45.455 0.00 0.00 0.00 4.01
45 46 4.320057 GCATCGAGATTAGGGAAATGCTTG 60.320 45.833 0.00 0.00 36.12 4.01
46 47 3.817647 GCATCGAGATTAGGGAAATGCTT 59.182 43.478 0.00 0.00 36.12 3.91
47 48 3.181451 TGCATCGAGATTAGGGAAATGCT 60.181 43.478 0.00 0.00 38.96 3.79
48 49 3.141398 TGCATCGAGATTAGGGAAATGC 58.859 45.455 0.00 0.00 38.73 3.56
49 50 4.635223 TCTGCATCGAGATTAGGGAAATG 58.365 43.478 0.00 0.00 0.00 2.32
50 51 4.963318 TCTGCATCGAGATTAGGGAAAT 57.037 40.909 0.00 0.00 0.00 2.17
51 52 4.753516 TTCTGCATCGAGATTAGGGAAA 57.246 40.909 0.00 0.00 0.00 3.13
52 53 4.753516 TTTCTGCATCGAGATTAGGGAA 57.246 40.909 0.00 0.00 0.00 3.97
53 54 4.753516 TTTTCTGCATCGAGATTAGGGA 57.246 40.909 0.00 0.00 0.00 4.20
54 55 5.333645 CGATTTTTCTGCATCGAGATTAGGG 60.334 44.000 0.00 0.00 44.18 3.53
55 56 5.674008 CGATTTTTCTGCATCGAGATTAGG 58.326 41.667 0.00 0.00 44.18 2.69
61 62 1.324435 TCGCGATTTTTCTGCATCGAG 59.676 47.619 3.71 5.98 44.18 4.04
64 65 2.094258 TGTCTCGCGATTTTTCTGCATC 59.906 45.455 10.36 0.00 0.00 3.91
78 79 4.025647 GCATTTCTACCTATGTTGTCTCGC 60.026 45.833 0.00 0.00 0.00 5.03
84 85 6.051717 AGCACTAGCATTTCTACCTATGTTG 58.948 40.000 0.00 0.00 45.49 3.33
86 87 5.878406 AGCACTAGCATTTCTACCTATGT 57.122 39.130 0.00 0.00 45.49 2.29
88 89 7.130681 AGAAAGCACTAGCATTTCTACCTAT 57.869 36.000 13.06 0.00 41.76 2.57
95 97 4.518249 AGGGTAGAAAGCACTAGCATTTC 58.482 43.478 13.59 6.75 45.49 2.17
105 107 4.528596 GCCTATAGATGAGGGTAGAAAGCA 59.471 45.833 0.00 0.00 34.35 3.91
109 111 5.965486 TCTTGCCTATAGATGAGGGTAGAA 58.035 41.667 0.00 0.00 34.35 2.10
117 119 7.038799 TGCAGTGATAATCTTGCCTATAGATGA 60.039 37.037 0.00 0.00 32.82 2.92
119 121 7.250032 TGCAGTGATAATCTTGCCTATAGAT 57.750 36.000 0.00 0.00 33.87 1.98
126 128 4.708726 AGTTTGCAGTGATAATCTTGCC 57.291 40.909 0.00 0.00 0.00 4.52
139 141 0.608640 ACGGAGGGAGTAGTTTGCAG 59.391 55.000 0.00 0.00 0.00 4.41
141 143 2.074576 GAAACGGAGGGAGTAGTTTGC 58.925 52.381 0.00 0.00 37.00 3.68
171 173 6.490566 AAGAGTGTACTGTCAAAAACGTTT 57.509 33.333 7.96 7.96 0.00 3.60
173 175 9.485206 AATATAAGAGTGTACTGTCAAAAACGT 57.515 29.630 0.00 0.00 0.00 3.99
181 183 7.368833 ACGCCATAATATAAGAGTGTACTGTC 58.631 38.462 0.00 0.00 0.00 3.51
184 186 9.609346 AAAAACGCCATAATATAAGAGTGTACT 57.391 29.630 0.00 0.00 0.00 2.73
222 224 6.826727 ACTCCCTCCATCCCATAATATAAGA 58.173 40.000 0.00 0.00 0.00 2.10
223 225 8.487028 GTTACTCCCTCCATCCCATAATATAAG 58.513 40.741 0.00 0.00 0.00 1.73
237 239 3.865571 ACTAAACAGGTTACTCCCTCCA 58.134 45.455 0.00 0.00 36.75 3.86
263 265 1.633852 GCTCTTCAGGAAGCGCTGTG 61.634 60.000 12.58 9.74 43.59 3.66
275 277 2.164422 CACAGTGATAGTCGGCTCTTCA 59.836 50.000 0.00 0.00 0.00 3.02
310 312 3.191371 GGTGCCCTTTACAACTCAGATTG 59.809 47.826 0.00 0.00 35.59 2.67
330 332 2.358737 CGAGCTCCGCCAAAAGGT 60.359 61.111 8.47 0.00 0.00 3.50
339 341 2.807045 GCACACTGTCGAGCTCCG 60.807 66.667 8.47 3.57 40.25 4.63
340 342 1.735920 CAGCACACTGTCGAGCTCC 60.736 63.158 8.47 0.00 39.22 4.70
346 348 2.175078 GCATGCAGCACACTGTCG 59.825 61.111 14.21 0.00 46.30 4.35
541 598 7.546667 GCATGTACACAAATGATTTTGGAGATT 59.453 33.333 0.00 0.00 45.34 2.40
552 609 4.631377 GCACTAGAGCATGTACACAAATGA 59.369 41.667 7.33 0.00 0.00 2.57
574 631 6.657836 TTCGGTTAATTTGCTAACTAGAGC 57.342 37.500 0.00 0.00 43.16 4.09
575 632 6.508088 CGCTTCGGTTAATTTGCTAACTAGAG 60.508 42.308 0.00 0.00 33.17 2.43
576 633 5.290158 CGCTTCGGTTAATTTGCTAACTAGA 59.710 40.000 0.00 0.00 33.17 2.43
577 634 5.490213 CGCTTCGGTTAATTTGCTAACTAG 58.510 41.667 0.00 0.00 33.17 2.57
578 635 4.330620 CCGCTTCGGTTAATTTGCTAACTA 59.669 41.667 0.00 0.00 42.73 2.24
579 636 3.126343 CCGCTTCGGTTAATTTGCTAACT 59.874 43.478 0.00 0.00 42.73 2.24
594 651 1.428448 TCAACTGTTCATCCGCTTCG 58.572 50.000 0.00 0.00 0.00 3.79
619 676 8.049117 AGTAATTGGCATCTTGTCTCTGAATTA 58.951 33.333 0.00 0.00 0.00 1.40
644 704 1.017701 GGCCCGTCGTTTCCAAGTAG 61.018 60.000 0.00 0.00 0.00 2.57
693 753 0.321671 TTGTAGGCTGGTCAGAGTGC 59.678 55.000 0.00 0.00 0.00 4.40
696 756 0.888619 TCGTTGTAGGCTGGTCAGAG 59.111 55.000 0.00 0.00 0.00 3.35
720 780 9.178427 GAATCAAATTGCTACTGATTGATTAGC 57.822 33.333 10.88 0.00 45.61 3.09
749 809 7.171678 GCTTACTGAATTATTAGTGCTCCGATT 59.828 37.037 0.00 0.00 0.00 3.34
750 810 6.647067 GCTTACTGAATTATTAGTGCTCCGAT 59.353 38.462 0.00 0.00 0.00 4.18
751 811 5.983720 GCTTACTGAATTATTAGTGCTCCGA 59.016 40.000 0.00 0.00 0.00 4.55
752 812 5.753438 TGCTTACTGAATTATTAGTGCTCCG 59.247 40.000 0.00 0.00 0.00 4.63
770 833 3.122971 GTTCCGGGCGGTGCTTAC 61.123 66.667 0.00 0.00 36.47 2.34
940 1014 4.162509 GGAGGTTGGTATATATGGAGGCTC 59.837 50.000 5.78 5.78 0.00 4.70
984 1067 2.209809 ATGGGAGGTGGGTGGTGA 59.790 61.111 0.00 0.00 0.00 4.02
999 1082 0.911769 TACAAGTGGAGGAGGCCATG 59.088 55.000 5.01 0.00 40.68 3.66
1660 1775 3.928992 TGAACTCTCGATGAGCAACAATC 59.071 43.478 10.59 3.36 46.41 2.67
1761 1882 3.662759 TCCTGAAAACAAACACCCTCT 57.337 42.857 0.00 0.00 0.00 3.69
1762 1883 3.699538 AGTTCCTGAAAACAAACACCCTC 59.300 43.478 0.00 0.00 0.00 4.30
1763 1884 3.708451 AGTTCCTGAAAACAAACACCCT 58.292 40.909 0.00 0.00 0.00 4.34
1764 1885 4.465632 AAGTTCCTGAAAACAAACACCC 57.534 40.909 0.00 0.00 0.00 4.61
1766 1887 7.973944 AGTCAATAAGTTCCTGAAAACAAACAC 59.026 33.333 0.00 0.00 0.00 3.32
1767 1888 8.062065 AGTCAATAAGTTCCTGAAAACAAACA 57.938 30.769 0.00 0.00 0.00 2.83
1768 1889 8.926715 AAGTCAATAAGTTCCTGAAAACAAAC 57.073 30.769 0.00 0.00 0.00 2.93
1797 1918 9.886132 TGAGACTTATAGGGACATTTTTAAGTC 57.114 33.333 10.97 10.97 42.68 3.01
1805 1926 8.652290 GGTTTAGATGAGACTTATAGGGACATT 58.348 37.037 0.00 0.00 0.00 2.71
1806 1927 7.789831 TGGTTTAGATGAGACTTATAGGGACAT 59.210 37.037 0.00 0.00 0.00 3.06
1807 1928 7.130099 TGGTTTAGATGAGACTTATAGGGACA 58.870 38.462 0.00 0.00 0.00 4.02
1808 1929 7.598759 TGGTTTAGATGAGACTTATAGGGAC 57.401 40.000 0.00 0.00 0.00 4.46
1809 1930 8.483758 GTTTGGTTTAGATGAGACTTATAGGGA 58.516 37.037 0.00 0.00 0.00 4.20
1810 1931 8.265055 TGTTTGGTTTAGATGAGACTTATAGGG 58.735 37.037 0.00 0.00 0.00 3.53
1811 1932 9.319143 CTGTTTGGTTTAGATGAGACTTATAGG 57.681 37.037 0.00 0.00 0.00 2.57
1812 1933 9.319143 CCTGTTTGGTTTAGATGAGACTTATAG 57.681 37.037 0.00 0.00 0.00 1.31
1813 1934 9.042450 TCCTGTTTGGTTTAGATGAGACTTATA 57.958 33.333 0.00 0.00 37.07 0.98
1814 1935 7.918076 TCCTGTTTGGTTTAGATGAGACTTAT 58.082 34.615 0.00 0.00 37.07 1.73
1815 1936 7.311092 TCCTGTTTGGTTTAGATGAGACTTA 57.689 36.000 0.00 0.00 37.07 2.24
1816 1937 6.187727 TCCTGTTTGGTTTAGATGAGACTT 57.812 37.500 0.00 0.00 37.07 3.01
1817 1938 5.825593 TCCTGTTTGGTTTAGATGAGACT 57.174 39.130 0.00 0.00 37.07 3.24
1818 1939 5.355350 CCATCCTGTTTGGTTTAGATGAGAC 59.645 44.000 0.00 0.00 34.40 3.36
1819 1940 5.250543 TCCATCCTGTTTGGTTTAGATGAGA 59.749 40.000 0.00 0.00 34.40 3.27
1820 1941 5.500234 TCCATCCTGTTTGGTTTAGATGAG 58.500 41.667 0.00 0.00 34.40 2.90
1821 1942 5.512942 TCCATCCTGTTTGGTTTAGATGA 57.487 39.130 0.00 0.00 34.40 2.92
1822 1943 6.780457 AATCCATCCTGTTTGGTTTAGATG 57.220 37.500 0.00 0.00 35.64 2.90
1824 1945 9.627123 CTATAAATCCATCCTGTTTGGTTTAGA 57.373 33.333 0.00 0.00 35.64 2.10
1825 1946 8.850156 CCTATAAATCCATCCTGTTTGGTTTAG 58.150 37.037 0.00 0.00 35.64 1.85
1826 1947 7.782644 CCCTATAAATCCATCCTGTTTGGTTTA 59.217 37.037 0.00 0.00 35.64 2.01
1827 1948 6.611236 CCCTATAAATCCATCCTGTTTGGTTT 59.389 38.462 0.00 0.00 35.64 3.27
1828 1949 6.068498 TCCCTATAAATCCATCCTGTTTGGTT 60.068 38.462 0.00 0.00 35.64 3.67
1829 1950 5.435041 TCCCTATAAATCCATCCTGTTTGGT 59.565 40.000 0.00 0.00 35.64 3.67
1830 1951 5.770162 GTCCCTATAAATCCATCCTGTTTGG 59.230 44.000 0.00 0.00 35.45 3.28
1831 1952 6.605119 AGTCCCTATAAATCCATCCTGTTTG 58.395 40.000 0.00 0.00 0.00 2.93
1832 1953 6.848562 AGTCCCTATAAATCCATCCTGTTT 57.151 37.500 0.00 0.00 0.00 2.83
1833 1954 6.848562 AAGTCCCTATAAATCCATCCTGTT 57.151 37.500 0.00 0.00 0.00 3.16
1834 1955 7.947782 TTAAGTCCCTATAAATCCATCCTGT 57.052 36.000 0.00 0.00 0.00 4.00
1835 1956 8.386264 ACATTAAGTCCCTATAAATCCATCCTG 58.614 37.037 0.00 0.00 0.00 3.86
1836 1957 8.386264 CACATTAAGTCCCTATAAATCCATCCT 58.614 37.037 0.00 0.00 0.00 3.24
1837 1958 7.121315 GCACATTAAGTCCCTATAAATCCATCC 59.879 40.741 0.00 0.00 0.00 3.51
1838 1959 7.148407 CGCACATTAAGTCCCTATAAATCCATC 60.148 40.741 0.00 0.00 0.00 3.51
1839 1960 6.655003 CGCACATTAAGTCCCTATAAATCCAT 59.345 38.462 0.00 0.00 0.00 3.41
1840 1961 5.995282 CGCACATTAAGTCCCTATAAATCCA 59.005 40.000 0.00 0.00 0.00 3.41
1841 1962 5.106673 GCGCACATTAAGTCCCTATAAATCC 60.107 44.000 0.30 0.00 0.00 3.01
1842 1963 5.468746 TGCGCACATTAAGTCCCTATAAATC 59.531 40.000 5.66 0.00 0.00 2.17
1843 1964 5.373222 TGCGCACATTAAGTCCCTATAAAT 58.627 37.500 5.66 0.00 0.00 1.40
1844 1965 4.771903 TGCGCACATTAAGTCCCTATAAA 58.228 39.130 5.66 0.00 0.00 1.40
1845 1966 4.409718 TGCGCACATTAAGTCCCTATAA 57.590 40.909 5.66 0.00 0.00 0.98
1846 1967 4.617253 ATGCGCACATTAAGTCCCTATA 57.383 40.909 14.90 0.00 30.07 1.31
1847 1968 3.492102 ATGCGCACATTAAGTCCCTAT 57.508 42.857 14.90 0.00 30.07 2.57
1848 1969 3.275617 AATGCGCACATTAAGTCCCTA 57.724 42.857 14.90 0.00 44.78 3.53
1849 1970 2.128771 AATGCGCACATTAAGTCCCT 57.871 45.000 14.90 0.00 44.78 4.20
1850 1971 2.529151 CAAATGCGCACATTAAGTCCC 58.471 47.619 14.90 0.00 45.90 4.46
1851 1972 2.529151 CCAAATGCGCACATTAAGTCC 58.471 47.619 14.90 0.00 45.90 3.85
1852 1973 2.163412 TCCCAAATGCGCACATTAAGTC 59.837 45.455 14.90 0.00 45.90 3.01
1853 1974 2.166829 TCCCAAATGCGCACATTAAGT 58.833 42.857 14.90 0.00 45.90 2.24
1854 1975 2.937469 TCCCAAATGCGCACATTAAG 57.063 45.000 14.90 6.07 45.90 1.85
1855 1976 3.883830 AATCCCAAATGCGCACATTAA 57.116 38.095 14.90 0.00 45.90 1.40
1856 1977 3.883830 AAATCCCAAATGCGCACATTA 57.116 38.095 14.90 0.00 45.90 1.90
1858 1979 3.493002 CCATAAATCCCAAATGCGCACAT 60.493 43.478 14.90 0.54 38.49 3.21
1859 1980 2.159128 CCATAAATCCCAAATGCGCACA 60.159 45.455 14.90 0.00 0.00 4.57
1860 1981 2.100584 TCCATAAATCCCAAATGCGCAC 59.899 45.455 14.90 0.00 0.00 5.34
1861 1982 2.382882 TCCATAAATCCCAAATGCGCA 58.617 42.857 14.96 14.96 0.00 6.09
1862 1983 3.451141 TTCCATAAATCCCAAATGCGC 57.549 42.857 0.00 0.00 0.00 6.09
1863 1984 6.863126 GTCTTATTCCATAAATCCCAAATGCG 59.137 38.462 0.00 0.00 0.00 4.73
1864 1985 7.955918 AGTCTTATTCCATAAATCCCAAATGC 58.044 34.615 0.00 0.00 0.00 3.56
1867 1988 9.540538 TGAAAGTCTTATTCCATAAATCCCAAA 57.459 29.630 0.00 0.00 0.00 3.28
1868 1989 9.540538 TTGAAAGTCTTATTCCATAAATCCCAA 57.459 29.630 0.00 0.00 0.00 4.12
1869 1990 9.189156 CTTGAAAGTCTTATTCCATAAATCCCA 57.811 33.333 0.00 0.00 0.00 4.37
1870 1991 8.633561 CCTTGAAAGTCTTATTCCATAAATCCC 58.366 37.037 0.00 0.00 0.00 3.85
1871 1992 9.408648 TCCTTGAAAGTCTTATTCCATAAATCC 57.591 33.333 0.00 0.00 0.00 3.01
1873 1994 9.413734 CCTCCTTGAAAGTCTTATTCCATAAAT 57.586 33.333 0.00 0.00 0.00 1.40
1874 1995 7.834181 CCCTCCTTGAAAGTCTTATTCCATAAA 59.166 37.037 0.00 0.00 0.00 1.40
1875 1996 7.183839 TCCCTCCTTGAAAGTCTTATTCCATAA 59.816 37.037 0.00 0.00 0.00 1.90
1876 1997 6.676632 TCCCTCCTTGAAAGTCTTATTCCATA 59.323 38.462 0.00 0.00 0.00 2.74
1877 1998 5.492524 TCCCTCCTTGAAAGTCTTATTCCAT 59.507 40.000 0.00 0.00 0.00 3.41
1878 1999 4.849810 TCCCTCCTTGAAAGTCTTATTCCA 59.150 41.667 0.00 0.00 0.00 3.53
1879 2000 5.045505 AGTCCCTCCTTGAAAGTCTTATTCC 60.046 44.000 0.00 0.00 0.00 3.01
1880 2001 6.056090 AGTCCCTCCTTGAAAGTCTTATTC 57.944 41.667 0.00 0.00 0.00 1.75
1881 2002 6.455690 AAGTCCCTCCTTGAAAGTCTTATT 57.544 37.500 0.00 0.00 0.00 1.40
1882 2003 7.757242 ATAAGTCCCTCCTTGAAAGTCTTAT 57.243 36.000 0.00 0.00 0.00 1.73
1883 2004 7.344871 CCTATAAGTCCCTCCTTGAAAGTCTTA 59.655 40.741 0.00 0.00 0.00 2.10
1884 2005 6.157123 CCTATAAGTCCCTCCTTGAAAGTCTT 59.843 42.308 0.00 0.00 0.00 3.01
1885 2006 5.663556 CCTATAAGTCCCTCCTTGAAAGTCT 59.336 44.000 0.00 0.00 0.00 3.24
1886 2007 5.163290 CCCTATAAGTCCCTCCTTGAAAGTC 60.163 48.000 0.00 0.00 0.00 3.01
1887 2008 4.722279 CCCTATAAGTCCCTCCTTGAAAGT 59.278 45.833 0.00 0.00 0.00 2.66
1888 2009 4.969359 TCCCTATAAGTCCCTCCTTGAAAG 59.031 45.833 0.00 0.00 0.00 2.62
1889 2010 4.720273 GTCCCTATAAGTCCCTCCTTGAAA 59.280 45.833 0.00 0.00 0.00 2.69
1890 2011 4.015541 AGTCCCTATAAGTCCCTCCTTGAA 60.016 45.833 0.00 0.00 0.00 2.69
1891 2012 3.536434 AGTCCCTATAAGTCCCTCCTTGA 59.464 47.826 0.00 0.00 0.00 3.02
1892 2013 3.930035 AGTCCCTATAAGTCCCTCCTTG 58.070 50.000 0.00 0.00 0.00 3.61
1893 2014 4.645968 AAGTCCCTATAAGTCCCTCCTT 57.354 45.455 0.00 0.00 0.00 3.36
1894 2015 5.970692 ATAAGTCCCTATAAGTCCCTCCT 57.029 43.478 0.00 0.00 0.00 3.69
1895 2016 6.803017 ACTATAAGTCCCTATAAGTCCCTCC 58.197 44.000 0.00 0.00 0.00 4.30
1896 2017 7.729431 ACAACTATAAGTCCCTATAAGTCCCTC 59.271 40.741 0.00 0.00 0.00 4.30
1897 2018 7.602868 ACAACTATAAGTCCCTATAAGTCCCT 58.397 38.462 0.00 0.00 0.00 4.20
1898 2019 7.852550 ACAACTATAAGTCCCTATAAGTCCC 57.147 40.000 0.00 0.00 0.00 4.46
1907 2028 9.448587 AAGACCATATTACAACTATAAGTCCCT 57.551 33.333 0.00 0.00 0.00 4.20
1916 2037 9.275572 AGTCCCTTTAAGACCATATTACAACTA 57.724 33.333 0.00 0.00 34.67 2.24
1917 2038 8.159229 AGTCCCTTTAAGACCATATTACAACT 57.841 34.615 0.00 0.00 34.67 3.16
1918 2039 8.803397 AAGTCCCTTTAAGACCATATTACAAC 57.197 34.615 0.00 0.00 34.67 3.32
1940 2061 7.101700 CCGTTTGGTTTCTAGGACTTATAAGT 58.898 38.462 18.05 18.05 43.16 2.24
1941 2062 6.537660 CCCGTTTGGTTTCTAGGACTTATAAG 59.462 42.308 11.05 11.05 0.00 1.73
1942 2063 6.408869 CCCGTTTGGTTTCTAGGACTTATAA 58.591 40.000 0.00 0.00 0.00 0.98
1943 2064 5.981174 CCCGTTTGGTTTCTAGGACTTATA 58.019 41.667 0.00 0.00 0.00 0.98
1944 2065 4.840271 CCCGTTTGGTTTCTAGGACTTAT 58.160 43.478 0.00 0.00 0.00 1.73
1945 2066 4.276058 CCCGTTTGGTTTCTAGGACTTA 57.724 45.455 0.00 0.00 0.00 2.24
1946 2067 3.136009 CCCGTTTGGTTTCTAGGACTT 57.864 47.619 0.00 0.00 0.00 3.01
1947 2068 2.853235 CCCGTTTGGTTTCTAGGACT 57.147 50.000 0.00 0.00 0.00 3.85
1958 2079 0.541063 AAAAGCCCCTACCCGTTTGG 60.541 55.000 0.00 0.00 41.37 3.28
1959 2080 1.334160 AAAAAGCCCCTACCCGTTTG 58.666 50.000 0.00 0.00 0.00 2.93
1960 2081 2.976068 TAAAAAGCCCCTACCCGTTT 57.024 45.000 0.00 0.00 0.00 3.60
1961 2082 2.976068 TTAAAAAGCCCCTACCCGTT 57.024 45.000 0.00 0.00 0.00 4.44
1962 2083 2.376181 TCTTTAAAAAGCCCCTACCCGT 59.624 45.455 0.00 0.00 35.99 5.28
1963 2084 2.751259 GTCTTTAAAAAGCCCCTACCCG 59.249 50.000 0.00 0.00 35.99 5.28
1964 2085 4.043608 AGTCTTTAAAAAGCCCCTACCC 57.956 45.455 0.00 0.00 35.99 3.69
1965 2086 4.219944 CCAAGTCTTTAAAAAGCCCCTACC 59.780 45.833 0.00 0.00 35.99 3.18
1966 2087 4.219944 CCCAAGTCTTTAAAAAGCCCCTAC 59.780 45.833 0.00 0.00 35.99 3.18
1967 2088 4.106663 TCCCAAGTCTTTAAAAAGCCCCTA 59.893 41.667 0.00 0.00 35.99 3.53
1968 2089 3.116900 TCCCAAGTCTTTAAAAAGCCCCT 60.117 43.478 0.00 0.00 35.99 4.79
1969 2090 3.006537 GTCCCAAGTCTTTAAAAAGCCCC 59.993 47.826 0.00 0.00 35.99 5.80
1970 2091 3.895656 AGTCCCAAGTCTTTAAAAAGCCC 59.104 43.478 0.00 0.00 35.99 5.19
1971 2092 5.531122 AAGTCCCAAGTCTTTAAAAAGCC 57.469 39.130 0.00 0.00 35.99 4.35
1979 2100 9.232473 GTCTCAAATTATAAGTCCCAAGTCTTT 57.768 33.333 0.00 0.00 0.00 2.52
1980 2101 8.606830 AGTCTCAAATTATAAGTCCCAAGTCTT 58.393 33.333 0.00 0.00 0.00 3.01
1981 2102 8.152023 AGTCTCAAATTATAAGTCCCAAGTCT 57.848 34.615 0.00 0.00 0.00 3.24
1982 2103 9.315525 GTAGTCTCAAATTATAAGTCCCAAGTC 57.684 37.037 0.00 0.00 0.00 3.01
1983 2104 8.822805 TGTAGTCTCAAATTATAAGTCCCAAGT 58.177 33.333 0.00 0.00 0.00 3.16
1984 2105 9.667107 TTGTAGTCTCAAATTATAAGTCCCAAG 57.333 33.333 0.00 0.00 0.00 3.61
2010 2131 8.803235 GTTTGGTTCATAACTCCTAGGATTTTT 58.197 33.333 18.55 9.07 0.00 1.94
2011 2132 7.947890 TGTTTGGTTCATAACTCCTAGGATTTT 59.052 33.333 18.55 13.92 0.00 1.82
2012 2133 7.466804 TGTTTGGTTCATAACTCCTAGGATTT 58.533 34.615 17.59 17.59 0.00 2.17
2013 2134 7.027874 TGTTTGGTTCATAACTCCTAGGATT 57.972 36.000 13.12 3.27 0.00 3.01
2014 2135 6.353082 CCTGTTTGGTTCATAACTCCTAGGAT 60.353 42.308 13.12 0.11 0.00 3.24
2015 2136 5.045869 CCTGTTTGGTTCATAACTCCTAGGA 60.046 44.000 11.98 11.98 0.00 2.94
2016 2137 5.186198 CCTGTTTGGTTCATAACTCCTAGG 58.814 45.833 0.82 0.82 0.00 3.02
2017 2138 5.186198 CCCTGTTTGGTTCATAACTCCTAG 58.814 45.833 0.00 0.00 0.00 3.02
2018 2139 4.566907 GCCCTGTTTGGTTCATAACTCCTA 60.567 45.833 0.00 0.00 0.00 2.94
2019 2140 3.814316 GCCCTGTTTGGTTCATAACTCCT 60.814 47.826 0.00 0.00 0.00 3.69
2020 2141 2.492088 GCCCTGTTTGGTTCATAACTCC 59.508 50.000 0.00 0.00 0.00 3.85
2021 2142 2.492088 GGCCCTGTTTGGTTCATAACTC 59.508 50.000 0.00 0.00 0.00 3.01
2022 2143 2.158385 TGGCCCTGTTTGGTTCATAACT 60.158 45.455 0.00 0.00 0.00 2.24
2023 2144 2.243810 TGGCCCTGTTTGGTTCATAAC 58.756 47.619 0.00 0.00 0.00 1.89
2024 2145 2.685106 TGGCCCTGTTTGGTTCATAA 57.315 45.000 0.00 0.00 0.00 1.90
2025 2146 2.917713 ATGGCCCTGTTTGGTTCATA 57.082 45.000 0.00 0.00 0.00 2.15
2026 2147 2.917713 TATGGCCCTGTTTGGTTCAT 57.082 45.000 0.00 0.00 33.37 2.57
2027 2148 2.917713 ATATGGCCCTGTTTGGTTCA 57.082 45.000 0.00 0.00 0.00 3.18
2028 2149 3.883489 GAGTATATGGCCCTGTTTGGTTC 59.117 47.826 0.00 0.00 0.00 3.62
2029 2150 3.372675 GGAGTATATGGCCCTGTTTGGTT 60.373 47.826 0.00 0.00 0.00 3.67
2030 2151 2.174854 GGAGTATATGGCCCTGTTTGGT 59.825 50.000 0.00 0.00 0.00 3.67
2031 2152 2.443255 AGGAGTATATGGCCCTGTTTGG 59.557 50.000 0.00 0.00 0.00 3.28
2032 2153 3.480470 CAGGAGTATATGGCCCTGTTTG 58.520 50.000 0.00 0.00 40.84 2.93
2033 2154 3.864789 CAGGAGTATATGGCCCTGTTT 57.135 47.619 0.00 0.00 40.84 2.83
2037 2158 2.439507 CACAACAGGAGTATATGGCCCT 59.560 50.000 0.00 0.00 0.00 5.19
2038 2159 2.487265 CCACAACAGGAGTATATGGCCC 60.487 54.545 0.00 0.00 0.00 5.80
2039 2160 2.172717 ACCACAACAGGAGTATATGGCC 59.827 50.000 0.00 0.00 0.00 5.36
2040 2161 3.560636 ACCACAACAGGAGTATATGGC 57.439 47.619 0.00 0.00 0.00 4.40
2041 2162 5.984725 TGTAACCACAACAGGAGTATATGG 58.015 41.667 0.00 0.00 0.00 2.74
2042 2163 7.915293 TTTGTAACCACAACAGGAGTATATG 57.085 36.000 0.00 0.00 44.28 1.78
2064 2185 9.345517 CTCACGATTCATTTCACATTATGTTTT 57.654 29.630 0.00 0.00 0.00 2.43
2074 2195 5.725110 ACATAGCTCACGATTCATTTCAC 57.275 39.130 0.00 0.00 0.00 3.18
2094 2215 2.857186 TGACAGAGCAGCCAAATACA 57.143 45.000 0.00 0.00 0.00 2.29
2102 2223 6.254373 GCCTTTTATTTATTTGACAGAGCAGC 59.746 38.462 0.00 0.00 0.00 5.25
2143 2266 1.933853 ACAATCGAGACGCCAATAAGC 59.066 47.619 0.00 0.00 0.00 3.09
2144 2267 4.360563 AGTACAATCGAGACGCCAATAAG 58.639 43.478 0.00 0.00 0.00 1.73
2145 2268 4.357142 GAGTACAATCGAGACGCCAATAA 58.643 43.478 0.00 0.00 0.00 1.40
2146 2269 3.547413 CGAGTACAATCGAGACGCCAATA 60.547 47.826 0.00 0.00 45.56 1.90
2147 2270 2.794981 CGAGTACAATCGAGACGCCAAT 60.795 50.000 0.00 0.00 45.56 3.16
2204 2327 9.847706 GTCTTCTTCTCTTTCTCTTTTGTTTTT 57.152 29.630 0.00 0.00 0.00 1.94
2205 2328 9.014297 TGTCTTCTTCTCTTTCTCTTTTGTTTT 57.986 29.630 0.00 0.00 0.00 2.43
2206 2329 8.567285 TGTCTTCTTCTCTTTCTCTTTTGTTT 57.433 30.769 0.00 0.00 0.00 2.83
2207 2330 7.201688 GCTGTCTTCTTCTCTTTCTCTTTTGTT 60.202 37.037 0.00 0.00 0.00 2.83
2208 2331 6.259829 GCTGTCTTCTTCTCTTTCTCTTTTGT 59.740 38.462 0.00 0.00 0.00 2.83
2209 2332 6.259608 TGCTGTCTTCTTCTCTTTCTCTTTTG 59.740 38.462 0.00 0.00 0.00 2.44
2210 2333 6.352516 TGCTGTCTTCTTCTCTTTCTCTTTT 58.647 36.000 0.00 0.00 0.00 2.27
2211 2334 5.923204 TGCTGTCTTCTTCTCTTTCTCTTT 58.077 37.500 0.00 0.00 0.00 2.52
2212 2335 5.543507 TGCTGTCTTCTTCTCTTTCTCTT 57.456 39.130 0.00 0.00 0.00 2.85
2213 2336 5.743636 ATGCTGTCTTCTTCTCTTTCTCT 57.256 39.130 0.00 0.00 0.00 3.10
2214 2337 6.601264 CAAATGCTGTCTTCTTCTCTTTCTC 58.399 40.000 0.00 0.00 0.00 2.87
2219 2342 3.748083 TGCAAATGCTGTCTTCTTCTCT 58.252 40.909 6.97 0.00 42.66 3.10
2220 2343 4.494350 TTGCAAATGCTGTCTTCTTCTC 57.506 40.909 6.97 0.00 42.66 2.87
2235 2358 2.297033 GCTCACCATTCTCCTTTGCAAA 59.703 45.455 12.14 12.14 0.00 3.68
2261 2384 1.402787 AGCCACAGACTTTTTGGGTG 58.597 50.000 0.00 0.00 39.66 4.61
2263 2386 3.541996 AAAAGCCACAGACTTTTTGGG 57.458 42.857 0.00 0.00 43.08 4.12
2264 2387 4.620982 CCTAAAAGCCACAGACTTTTTGG 58.379 43.478 12.63 12.63 46.14 3.28
2271 2394 0.881796 GCCACCTAAAAGCCACAGAC 59.118 55.000 0.00 0.00 0.00 3.51
2272 2395 0.771127 AGCCACCTAAAAGCCACAGA 59.229 50.000 0.00 0.00 0.00 3.41
2273 2396 0.883833 CAGCCACCTAAAAGCCACAG 59.116 55.000 0.00 0.00 0.00 3.66
2274 2397 0.539438 CCAGCCACCTAAAAGCCACA 60.539 55.000 0.00 0.00 0.00 4.17
2336 2478 1.884926 GCCAGCCTCGACTATGCAC 60.885 63.158 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.