Multiple sequence alignment - TraesCS6B01G376800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G376800 chr6B 100.000 2538 0 0 1 2538 651986354 651988891 0.000000e+00 4687.0
1 TraesCS6B01G376800 chr6B 90.984 366 12 6 594 940 83574992 83574629 8.220000e-130 473.0
2 TraesCS6B01G376800 chr6B 93.182 264 14 4 331 593 708831645 708831385 3.960000e-103 385.0
3 TraesCS6B01G376800 chr6B 89.950 199 18 2 960 1158 686467559 686467755 3.240000e-64 255.0
4 TraesCS6B01G376800 chr6D 92.912 1044 44 10 786 1802 431846112 431847152 0.000000e+00 1491.0
5 TraesCS6B01G376800 chr6D 90.635 598 46 5 1813 2406 431847280 431847871 0.000000e+00 785.0
6 TraesCS6B01G376800 chrUn 92.704 1028 54 13 784 1799 74595887 74596905 0.000000e+00 1463.0
7 TraesCS6B01G376800 chrUn 91.864 590 44 3 1819 2407 74597190 74597776 0.000000e+00 821.0
8 TraesCS6B01G376800 chrUn 94.737 133 7 0 2406 2538 74597811 74597943 9.200000e-50 207.0
9 TraesCS6B01G376800 chrUn 87.324 142 18 0 1822 1963 74597049 74597190 2.020000e-36 163.0
10 TraesCS6B01G376800 chr5B 89.373 367 16 7 594 940 279775732 279775369 8.330000e-120 440.0
11 TraesCS6B01G376800 chr5B 92.776 263 17 2 330 591 105778916 105778655 1.840000e-101 379.0
12 TraesCS6B01G376800 chr4A 94.677 263 12 2 330 591 611095921 611095660 8.450000e-110 407.0
13 TraesCS6B01G376800 chr7B 93.536 263 13 3 331 591 346972654 346972914 3.060000e-104 388.0
14 TraesCS6B01G376800 chr7B 81.068 412 52 22 1001 1388 62687897 62687488 3.170000e-79 305.0
15 TraesCS6B01G376800 chr7B 87.166 187 23 1 972 1158 420919398 420919583 7.110000e-51 211.0
16 TraesCS6B01G376800 chr2B 92.748 262 18 1 331 591 206287179 206286918 6.630000e-101 377.0
17 TraesCS6B01G376800 chr2B 87.817 197 22 2 960 1156 129710581 129710387 1.960000e-56 230.0
18 TraesCS6B01G376800 chr5D 91.882 271 18 4 336 604 550559376 550559108 2.380000e-100 375.0
19 TraesCS6B01G376800 chr1A 91.241 274 19 4 323 595 539881950 539882219 3.990000e-98 368.0
20 TraesCS6B01G376800 chr1A 79.695 394 63 12 1001 1388 554061374 554061756 4.160000e-68 268.0
21 TraesCS6B01G376800 chr3A 90.681 279 20 6 323 597 552211728 552212004 1.430000e-97 366.0
22 TraesCS6B01G376800 chr7A 90.647 278 20 6 330 606 584381572 584381844 5.160000e-97 364.0
23 TraesCS6B01G376800 chr7A 81.696 448 58 21 954 1388 108809355 108808919 4.020000e-93 351.0
24 TraesCS6B01G376800 chr7D 77.660 564 90 30 1001 1550 104567146 104566605 6.820000e-81 311.0
25 TraesCS6B01G376800 chr3B 88.158 228 16 2 1203 1430 33567748 33567964 6.960000e-66 261.0
26 TraesCS6B01G376800 chr3B 89.950 199 18 2 960 1158 779594348 779594152 3.240000e-64 255.0
27 TraesCS6B01G376800 chr3B 88.442 199 21 2 960 1158 33567540 33567736 3.260000e-59 239.0
28 TraesCS6B01G376800 chr3B 86.935 199 24 2 960 1158 713502352 713502156 3.290000e-54 222.0
29 TraesCS6B01G376800 chr3B 89.143 175 18 1 960 1134 164256089 164255916 1.530000e-52 217.0
30 TraesCS6B01G376800 chr1B 79.634 383 62 13 1001 1373 636838299 636838675 6.960000e-66 261.0
31 TraesCS6B01G376800 chr1D 78.195 399 69 14 1001 1388 462200536 462200927 3.260000e-59 239.0
32 TraesCS6B01G376800 chr5A 92.857 42 3 0 668 709 616638838 616638797 7.580000e-06 62.1
33 TraesCS6B01G376800 chr3D 97.059 34 1 0 668 701 430386368 430386335 9.810000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G376800 chr6B 651986354 651988891 2537 False 4687.0 4687 100.00000 1 2538 1 chr6B.!!$F1 2537
1 TraesCS6B01G376800 chr6D 431846112 431847871 1759 False 1138.0 1491 91.77350 786 2406 2 chr6D.!!$F1 1620
2 TraesCS6B01G376800 chrUn 74595887 74597943 2056 False 663.5 1463 91.65725 784 2538 4 chrUn.!!$F1 1754
3 TraesCS6B01G376800 chr7D 104566605 104567146 541 True 311.0 311 77.66000 1001 1550 1 chr7D.!!$R1 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
755 756 0.259647 TCCCTCAGCCCATCCAAATG 59.74 55.0 0.0 0.0 0.0 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2481 2861 0.03582 GAAACGTGCATGGGGAGGTA 60.036 55.0 11.36 0.0 32.93 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.883142 TTTCTTTTATTTCCTTCTTGCTTTTCA 57.117 25.926 0.00 0.00 0.00 2.69
28 29 9.696917 TCTTTTATTTCCTTCTTGCTTTTCATC 57.303 29.630 0.00 0.00 0.00 2.92
29 30 8.519492 TTTTATTTCCTTCTTGCTTTTCATCG 57.481 30.769 0.00 0.00 0.00 3.84
30 31 5.712152 ATTTCCTTCTTGCTTTTCATCGT 57.288 34.783 0.00 0.00 0.00 3.73
31 32 5.514274 TTTCCTTCTTGCTTTTCATCGTT 57.486 34.783 0.00 0.00 0.00 3.85
32 33 5.514274 TTCCTTCTTGCTTTTCATCGTTT 57.486 34.783 0.00 0.00 0.00 3.60
33 34 5.514274 TCCTTCTTGCTTTTCATCGTTTT 57.486 34.783 0.00 0.00 0.00 2.43
34 35 5.901552 TCCTTCTTGCTTTTCATCGTTTTT 58.098 33.333 0.00 0.00 0.00 1.94
35 36 5.977129 TCCTTCTTGCTTTTCATCGTTTTTC 59.023 36.000 0.00 0.00 0.00 2.29
36 37 5.979517 CCTTCTTGCTTTTCATCGTTTTTCT 59.020 36.000 0.00 0.00 0.00 2.52
37 38 6.074676 CCTTCTTGCTTTTCATCGTTTTTCTG 60.075 38.462 0.00 0.00 0.00 3.02
38 39 5.890334 TCTTGCTTTTCATCGTTTTTCTGT 58.110 33.333 0.00 0.00 0.00 3.41
39 40 6.329496 TCTTGCTTTTCATCGTTTTTCTGTT 58.671 32.000 0.00 0.00 0.00 3.16
40 41 6.811170 TCTTGCTTTTCATCGTTTTTCTGTTT 59.189 30.769 0.00 0.00 0.00 2.83
41 42 6.567769 TGCTTTTCATCGTTTTTCTGTTTC 57.432 33.333 0.00 0.00 0.00 2.78
42 43 6.329496 TGCTTTTCATCGTTTTTCTGTTTCT 58.671 32.000 0.00 0.00 0.00 2.52
43 44 6.472163 TGCTTTTCATCGTTTTTCTGTTTCTC 59.528 34.615 0.00 0.00 0.00 2.87
44 45 6.693113 GCTTTTCATCGTTTTTCTGTTTCTCT 59.307 34.615 0.00 0.00 0.00 3.10
45 46 7.096844 GCTTTTCATCGTTTTTCTGTTTCTCTC 60.097 37.037 0.00 0.00 0.00 3.20
46 47 7.553881 TTTCATCGTTTTTCTGTTTCTCTCT 57.446 32.000 0.00 0.00 0.00 3.10
47 48 6.771188 TCATCGTTTTTCTGTTTCTCTCTC 57.229 37.500 0.00 0.00 0.00 3.20
48 49 5.402568 TCATCGTTTTTCTGTTTCTCTCTCG 59.597 40.000 0.00 0.00 0.00 4.04
49 50 4.928601 TCGTTTTTCTGTTTCTCTCTCGA 58.071 39.130 0.00 0.00 0.00 4.04
50 51 5.529791 TCGTTTTTCTGTTTCTCTCTCGAT 58.470 37.500 0.00 0.00 0.00 3.59
51 52 5.983720 TCGTTTTTCTGTTTCTCTCTCGATT 59.016 36.000 0.00 0.00 0.00 3.34
52 53 6.479001 TCGTTTTTCTGTTTCTCTCTCGATTT 59.521 34.615 0.00 0.00 0.00 2.17
53 54 7.011109 TCGTTTTTCTGTTTCTCTCTCGATTTT 59.989 33.333 0.00 0.00 0.00 1.82
54 55 7.319144 CGTTTTTCTGTTTCTCTCTCGATTTTC 59.681 37.037 0.00 0.00 0.00 2.29
55 56 8.338986 GTTTTTCTGTTTCTCTCTCGATTTTCT 58.661 33.333 0.00 0.00 0.00 2.52
56 57 7.644986 TTTCTGTTTCTCTCTCGATTTTCTC 57.355 36.000 0.00 0.00 0.00 2.87
57 58 6.582677 TCTGTTTCTCTCTCGATTTTCTCT 57.417 37.500 0.00 0.00 0.00 3.10
58 59 7.689446 TCTGTTTCTCTCTCGATTTTCTCTA 57.311 36.000 0.00 0.00 0.00 2.43
59 60 8.287439 TCTGTTTCTCTCTCGATTTTCTCTAT 57.713 34.615 0.00 0.00 0.00 1.98
60 61 8.744652 TCTGTTTCTCTCTCGATTTTCTCTATT 58.255 33.333 0.00 0.00 0.00 1.73
61 62 9.364989 CTGTTTCTCTCTCGATTTTCTCTATTT 57.635 33.333 0.00 0.00 0.00 1.40
62 63 9.712305 TGTTTCTCTCTCGATTTTCTCTATTTT 57.288 29.630 0.00 0.00 0.00 1.82
65 66 8.621921 TCTCTCTCGATTTTCTCTATTTTTCG 57.378 34.615 0.00 0.00 0.00 3.46
66 67 8.244802 TCTCTCTCGATTTTCTCTATTTTTCGT 58.755 33.333 0.00 0.00 0.00 3.85
67 68 8.758633 TCTCTCGATTTTCTCTATTTTTCGTT 57.241 30.769 0.00 0.00 0.00 3.85
68 69 8.861101 TCTCTCGATTTTCTCTATTTTTCGTTC 58.139 33.333 0.00 0.00 0.00 3.95
69 70 8.758633 TCTCGATTTTCTCTATTTTTCGTTCT 57.241 30.769 0.00 0.00 0.00 3.01
70 71 8.648097 TCTCGATTTTCTCTATTTTTCGTTCTG 58.352 33.333 0.00 0.00 0.00 3.02
71 72 8.306680 TCGATTTTCTCTATTTTTCGTTCTGT 57.693 30.769 0.00 0.00 0.00 3.41
72 73 8.770828 TCGATTTTCTCTATTTTTCGTTCTGTT 58.229 29.630 0.00 0.00 0.00 3.16
73 74 8.831372 CGATTTTCTCTATTTTTCGTTCTGTTG 58.169 33.333 0.00 0.00 0.00 3.33
74 75 9.878599 GATTTTCTCTATTTTTCGTTCTGTTGA 57.121 29.630 0.00 0.00 0.00 3.18
76 77 9.716507 TTTTCTCTATTTTTCGTTCTGTTGAAG 57.283 29.630 0.00 0.00 32.15 3.02
77 78 8.433421 TTCTCTATTTTTCGTTCTGTTGAAGT 57.567 30.769 0.00 0.00 32.15 3.01
78 79 9.537192 TTCTCTATTTTTCGTTCTGTTGAAGTA 57.463 29.630 0.00 0.00 32.15 2.24
79 80 9.193133 TCTCTATTTTTCGTTCTGTTGAAGTAG 57.807 33.333 0.00 0.00 32.15 2.57
80 81 8.882415 TCTATTTTTCGTTCTGTTGAAGTAGT 57.118 30.769 0.00 0.00 32.15 2.73
81 82 9.321562 TCTATTTTTCGTTCTGTTGAAGTAGTT 57.678 29.630 0.00 0.00 32.15 2.24
82 83 9.931210 CTATTTTTCGTTCTGTTGAAGTAGTTT 57.069 29.630 0.00 0.00 32.15 2.66
83 84 8.836959 ATTTTTCGTTCTGTTGAAGTAGTTTC 57.163 30.769 0.00 0.00 36.29 2.78
84 85 7.605410 TTTTCGTTCTGTTGAAGTAGTTTCT 57.395 32.000 0.00 0.00 36.71 2.52
85 86 7.605410 TTTCGTTCTGTTGAAGTAGTTTCTT 57.395 32.000 0.00 0.00 36.71 2.52
86 87 7.605410 TTCGTTCTGTTGAAGTAGTTTCTTT 57.395 32.000 0.00 0.00 36.71 2.52
87 88 8.706492 TTCGTTCTGTTGAAGTAGTTTCTTTA 57.294 30.769 0.00 0.00 36.71 1.85
88 89 8.348983 TCGTTCTGTTGAAGTAGTTTCTTTAG 57.651 34.615 0.00 0.00 36.71 1.85
89 90 7.437267 TCGTTCTGTTGAAGTAGTTTCTTTAGG 59.563 37.037 0.00 0.00 36.71 2.69
90 91 7.224167 CGTTCTGTTGAAGTAGTTTCTTTAGGT 59.776 37.037 0.00 0.00 36.71 3.08
91 92 8.890718 GTTCTGTTGAAGTAGTTTCTTTAGGTT 58.109 33.333 0.00 0.00 36.71 3.50
92 93 9.457436 TTCTGTTGAAGTAGTTTCTTTAGGTTT 57.543 29.630 0.00 0.00 36.71 3.27
93 94 9.457436 TCTGTTGAAGTAGTTTCTTTAGGTTTT 57.543 29.630 0.00 0.00 36.71 2.43
106 107 9.952030 TTTCTTTAGGTTTTTCATTTTCCTTGT 57.048 25.926 0.00 0.00 0.00 3.16
107 108 9.952030 TTCTTTAGGTTTTTCATTTTCCTTGTT 57.048 25.926 0.00 0.00 0.00 2.83
108 109 9.952030 TCTTTAGGTTTTTCATTTTCCTTGTTT 57.048 25.926 0.00 0.00 0.00 2.83
300 301 8.950007 ATTTTTCTTATGTCTACCTTTTCCCA 57.050 30.769 0.00 0.00 0.00 4.37
301 302 8.950007 TTTTTCTTATGTCTACCTTTTCCCAT 57.050 30.769 0.00 0.00 0.00 4.00
306 307 9.442062 TCTTATGTCTACCTTTTCCCATATACA 57.558 33.333 0.00 0.00 0.00 2.29
309 310 8.924511 ATGTCTACCTTTTCCCATATACATTG 57.075 34.615 0.00 0.00 0.00 2.82
310 311 7.867921 TGTCTACCTTTTCCCATATACATTGT 58.132 34.615 0.00 0.00 0.00 2.71
311 312 8.994500 TGTCTACCTTTTCCCATATACATTGTA 58.006 33.333 0.00 0.00 0.00 2.41
352 353 9.783081 TTTATACTTCCTCCGTTTCTTTTTAGT 57.217 29.630 0.00 0.00 0.00 2.24
353 354 7.902387 ATACTTCCTCCGTTTCTTTTTAGTC 57.098 36.000 0.00 0.00 0.00 2.59
354 355 5.926663 ACTTCCTCCGTTTCTTTTTAGTCT 58.073 37.500 0.00 0.00 0.00 3.24
355 356 5.758784 ACTTCCTCCGTTTCTTTTTAGTCTG 59.241 40.000 0.00 0.00 0.00 3.51
356 357 4.062991 TCCTCCGTTTCTTTTTAGTCTGC 58.937 43.478 0.00 0.00 0.00 4.26
357 358 3.813166 CCTCCGTTTCTTTTTAGTCTGCA 59.187 43.478 0.00 0.00 0.00 4.41
358 359 4.455877 CCTCCGTTTCTTTTTAGTCTGCAT 59.544 41.667 0.00 0.00 0.00 3.96
359 360 5.642063 CCTCCGTTTCTTTTTAGTCTGCATA 59.358 40.000 0.00 0.00 0.00 3.14
360 361 6.316390 CCTCCGTTTCTTTTTAGTCTGCATAT 59.684 38.462 0.00 0.00 0.00 1.78
361 362 7.494625 CCTCCGTTTCTTTTTAGTCTGCATATA 59.505 37.037 0.00 0.00 0.00 0.86
362 363 8.780846 TCCGTTTCTTTTTAGTCTGCATATAA 57.219 30.769 0.00 0.00 0.00 0.98
363 364 8.879759 TCCGTTTCTTTTTAGTCTGCATATAAG 58.120 33.333 0.00 0.00 0.00 1.73
364 365 8.879759 CCGTTTCTTTTTAGTCTGCATATAAGA 58.120 33.333 0.00 0.00 0.00 2.10
376 377 9.686683 AGTCTGCATATAAGATTTGGTTAAAGT 57.313 29.630 0.00 0.00 0.00 2.66
377 378 9.937175 GTCTGCATATAAGATTTGGTTAAAGTC 57.063 33.333 0.00 0.00 0.00 3.01
378 379 9.679661 TCTGCATATAAGATTTGGTTAAAGTCA 57.320 29.630 0.00 0.00 0.00 3.41
387 388 9.719355 AAGATTTGGTTAAAGTCAAACTTTGTT 57.281 25.926 13.83 0.00 46.83 2.83
391 392 9.984190 TTTGGTTAAAGTCAAACTTTGTTAACT 57.016 25.926 13.83 7.11 46.83 2.24
392 393 9.984190 TTGGTTAAAGTCAAACTTTGTTAACTT 57.016 25.926 13.83 11.10 46.83 2.66
393 394 9.984190 TGGTTAAAGTCAAACTTTGTTAACTTT 57.016 25.926 17.38 17.38 46.83 2.66
469 470 9.878667 TTGTTAGATGCATCATGAAATCAATTT 57.121 25.926 27.81 5.53 0.00 1.82
470 471 9.878667 TGTTAGATGCATCATGAAATCAATTTT 57.121 25.926 27.81 5.10 0.00 1.82
558 559 9.936759 TTAAAAAGTTTGACTTTGACCAAATCT 57.063 25.926 6.81 0.00 46.78 2.40
559 560 8.846943 AAAAAGTTTGACTTTGACCAAATCTT 57.153 26.923 6.81 0.00 46.78 2.40
560 561 9.936759 AAAAAGTTTGACTTTGACCAAATCTTA 57.063 25.926 6.81 0.00 46.78 2.10
565 566 9.076596 GTTTGACTTTGACCAAATCTTATATGC 57.923 33.333 0.00 0.00 35.14 3.14
566 567 7.936496 TGACTTTGACCAAATCTTATATGCA 57.064 32.000 0.00 0.00 0.00 3.96
567 568 7.988737 TGACTTTGACCAAATCTTATATGCAG 58.011 34.615 0.00 0.00 0.00 4.41
568 569 7.828717 TGACTTTGACCAAATCTTATATGCAGA 59.171 33.333 0.00 0.00 0.00 4.26
569 570 8.757982 ACTTTGACCAAATCTTATATGCAGAT 57.242 30.769 0.00 0.00 31.94 2.90
570 571 9.193806 ACTTTGACCAAATCTTATATGCAGATT 57.806 29.630 0.00 0.00 41.84 2.40
585 586 6.817765 ATGCAGATTAAAAAGAAACGGAGA 57.182 33.333 0.00 0.00 0.00 3.71
586 587 6.241207 TGCAGATTAAAAAGAAACGGAGAG 57.759 37.500 0.00 0.00 0.00 3.20
587 588 5.995282 TGCAGATTAAAAAGAAACGGAGAGA 59.005 36.000 0.00 0.00 0.00 3.10
588 589 6.147821 TGCAGATTAAAAAGAAACGGAGAGAG 59.852 38.462 0.00 0.00 0.00 3.20
589 590 6.147985 GCAGATTAAAAAGAAACGGAGAGAGT 59.852 38.462 0.00 0.00 0.00 3.24
590 591 7.331193 GCAGATTAAAAAGAAACGGAGAGAGTA 59.669 37.037 0.00 0.00 0.00 2.59
591 592 8.648968 CAGATTAAAAAGAAACGGAGAGAGTAC 58.351 37.037 0.00 0.00 0.00 2.73
592 593 8.365647 AGATTAAAAAGAAACGGAGAGAGTACA 58.634 33.333 0.00 0.00 0.00 2.90
593 594 8.897872 ATTAAAAAGAAACGGAGAGAGTACAA 57.102 30.769 0.00 0.00 0.00 2.41
594 595 8.897872 TTAAAAAGAAACGGAGAGAGTACAAT 57.102 30.769 0.00 0.00 0.00 2.71
595 596 7.803279 AAAAAGAAACGGAGAGAGTACAATT 57.197 32.000 0.00 0.00 0.00 2.32
596 597 7.803279 AAAAGAAACGGAGAGAGTACAATTT 57.197 32.000 0.00 0.00 0.00 1.82
597 598 7.803279 AAAGAAACGGAGAGAGTACAATTTT 57.197 32.000 0.00 0.00 0.00 1.82
598 599 6.787085 AGAAACGGAGAGAGTACAATTTTG 57.213 37.500 0.00 0.00 0.00 2.44
599 600 6.289064 AGAAACGGAGAGAGTACAATTTTGT 58.711 36.000 1.08 1.08 44.86 2.83
600 601 7.439381 AGAAACGGAGAGAGTACAATTTTGTA 58.561 34.615 0.00 0.00 42.35 2.41
601 602 7.929785 AGAAACGGAGAGAGTACAATTTTGTAA 59.070 33.333 4.79 0.00 44.46 2.41
602 603 8.617290 AAACGGAGAGAGTACAATTTTGTAAT 57.383 30.769 4.79 4.04 44.46 1.89
603 604 7.596749 ACGGAGAGAGTACAATTTTGTAATG 57.403 36.000 8.02 0.00 44.46 1.90
604 605 6.092259 ACGGAGAGAGTACAATTTTGTAATGC 59.908 38.462 8.02 1.47 44.46 3.56
605 606 6.092122 CGGAGAGAGTACAATTTTGTAATGCA 59.908 38.462 8.02 0.00 44.46 3.96
606 607 7.201644 CGGAGAGAGTACAATTTTGTAATGCAT 60.202 37.037 8.02 0.00 44.46 3.96
607 608 7.912250 GGAGAGAGTACAATTTTGTAATGCATG 59.088 37.037 8.02 0.00 44.46 4.06
608 609 8.340618 AGAGAGTACAATTTTGTAATGCATGT 57.659 30.769 8.02 0.00 44.46 3.21
609 610 8.796475 AGAGAGTACAATTTTGTAATGCATGTT 58.204 29.630 8.02 0.00 44.46 2.71
610 611 8.746922 AGAGTACAATTTTGTAATGCATGTTG 57.253 30.769 8.02 0.40 44.46 3.33
611 612 8.575589 AGAGTACAATTTTGTAATGCATGTTGA 58.424 29.630 8.02 0.00 44.46 3.18
612 613 9.190858 GAGTACAATTTTGTAATGCATGTTGAA 57.809 29.630 8.02 0.00 44.46 2.69
613 614 8.977505 AGTACAATTTTGTAATGCATGTTGAAC 58.022 29.630 0.00 0.00 44.46 3.18
614 615 7.783090 ACAATTTTGTAATGCATGTTGAACA 57.217 28.000 0.00 0.00 40.16 3.18
615 616 8.380743 ACAATTTTGTAATGCATGTTGAACAT 57.619 26.923 4.72 4.72 38.39 2.71
616 617 8.838365 ACAATTTTGTAATGCATGTTGAACATT 58.162 25.926 8.30 0.00 36.77 2.71
621 622 9.702494 TTTGTAATGCATGTTGAACATTATTGA 57.298 25.926 19.62 9.39 36.53 2.57
622 623 9.702494 TTGTAATGCATGTTGAACATTATTGAA 57.298 25.926 19.62 12.91 36.53 2.69
623 624 9.702494 TGTAATGCATGTTGAACATTATTGAAA 57.298 25.926 19.62 8.61 36.53 2.69
627 628 9.872721 ATGCATGTTGAACATTATTGAAATACA 57.127 25.926 8.30 0.00 36.53 2.29
628 629 9.702494 TGCATGTTGAACATTATTGAAATACAA 57.298 25.926 8.30 0.00 36.53 2.41
663 664 9.719279 TTTTTAGTACACGGTCAACATTTTTAG 57.281 29.630 0.00 0.00 0.00 1.85
664 665 8.436046 TTTAGTACACGGTCAACATTTTTAGT 57.564 30.769 0.00 0.00 0.00 2.24
665 666 9.539825 TTTAGTACACGGTCAACATTTTTAGTA 57.460 29.630 0.00 0.00 0.00 1.82
666 667 7.412137 AGTACACGGTCAACATTTTTAGTAC 57.588 36.000 0.00 0.00 0.00 2.73
667 668 6.985645 AGTACACGGTCAACATTTTTAGTACA 59.014 34.615 0.00 0.00 32.73 2.90
668 669 6.295039 ACACGGTCAACATTTTTAGTACAG 57.705 37.500 0.00 0.00 0.00 2.74
669 670 5.237779 ACACGGTCAACATTTTTAGTACAGG 59.762 40.000 0.00 0.00 0.00 4.00
670 671 4.758165 ACGGTCAACATTTTTAGTACAGGG 59.242 41.667 0.00 0.00 0.00 4.45
671 672 4.758165 CGGTCAACATTTTTAGTACAGGGT 59.242 41.667 0.00 0.00 0.00 4.34
672 673 5.239963 CGGTCAACATTTTTAGTACAGGGTT 59.760 40.000 0.00 0.00 0.00 4.11
673 674 6.567132 CGGTCAACATTTTTAGTACAGGGTTC 60.567 42.308 0.00 0.00 0.00 3.62
674 675 6.294342 GGTCAACATTTTTAGTACAGGGTTCC 60.294 42.308 0.00 0.00 0.00 3.62
675 676 5.771165 TCAACATTTTTAGTACAGGGTTCCC 59.229 40.000 0.00 0.00 0.00 3.97
676 677 5.594199 ACATTTTTAGTACAGGGTTCCCT 57.406 39.130 4.31 4.31 36.80 4.20
677 678 5.960704 ACATTTTTAGTACAGGGTTCCCTT 58.039 37.500 7.79 3.16 33.50 3.95
678 679 6.008331 ACATTTTTAGTACAGGGTTCCCTTC 58.992 40.000 7.79 2.49 33.50 3.46
679 680 3.967332 TTTAGTACAGGGTTCCCTTCG 57.033 47.619 7.79 0.69 33.50 3.79
680 681 2.610438 TAGTACAGGGTTCCCTTCGT 57.390 50.000 7.79 6.86 33.50 3.85
681 682 1.264295 AGTACAGGGTTCCCTTCGTC 58.736 55.000 7.79 0.14 33.50 4.20
682 683 1.203149 AGTACAGGGTTCCCTTCGTCT 60.203 52.381 7.79 2.35 33.50 4.18
683 684 1.204231 GTACAGGGTTCCCTTCGTCTC 59.796 57.143 7.79 0.00 33.50 3.36
684 685 1.215647 CAGGGTTCCCTTCGTCTCG 59.784 63.158 7.79 0.00 33.50 4.04
685 686 2.125633 GGGTTCCCTTCGTCTCGC 60.126 66.667 0.00 0.00 0.00 5.03
686 687 2.647158 GGGTTCCCTTCGTCTCGCT 61.647 63.158 0.00 0.00 0.00 4.93
687 688 1.318158 GGGTTCCCTTCGTCTCGCTA 61.318 60.000 0.00 0.00 0.00 4.26
688 689 0.745468 GGTTCCCTTCGTCTCGCTAT 59.255 55.000 0.00 0.00 0.00 2.97
689 690 1.952296 GGTTCCCTTCGTCTCGCTATA 59.048 52.381 0.00 0.00 0.00 1.31
690 691 2.360165 GGTTCCCTTCGTCTCGCTATAA 59.640 50.000 0.00 0.00 0.00 0.98
691 692 3.550436 GGTTCCCTTCGTCTCGCTATAAG 60.550 52.174 0.00 0.00 0.00 1.73
692 693 1.607628 TCCCTTCGTCTCGCTATAAGC 59.392 52.381 0.00 0.00 38.02 3.09
705 706 4.866682 GCTATAAGCGAGAAATATGGGC 57.133 45.455 0.00 0.00 0.00 5.36
706 707 4.508662 GCTATAAGCGAGAAATATGGGCT 58.491 43.478 0.00 0.00 35.01 5.19
707 708 4.568760 GCTATAAGCGAGAAATATGGGCTC 59.431 45.833 0.00 0.00 32.62 4.70
708 709 2.262423 AAGCGAGAAATATGGGCTCC 57.738 50.000 0.00 0.00 32.62 4.70
709 710 1.131638 AGCGAGAAATATGGGCTCCA 58.868 50.000 0.00 0.00 38.19 3.86
710 711 1.071385 AGCGAGAAATATGGGCTCCAG 59.929 52.381 0.41 0.00 36.75 3.86
711 712 1.517242 CGAGAAATATGGGCTCCAGC 58.483 55.000 0.41 0.00 36.75 4.85
721 722 2.202946 GCTCCAGCCCTCTTACGC 60.203 66.667 0.00 0.00 34.31 4.42
722 723 2.501610 CTCCAGCCCTCTTACGCC 59.498 66.667 0.00 0.00 0.00 5.68
723 724 3.081409 TCCAGCCCTCTTACGCCC 61.081 66.667 0.00 0.00 0.00 6.13
724 725 4.176752 CCAGCCCTCTTACGCCCC 62.177 72.222 0.00 0.00 0.00 5.80
725 726 3.399181 CAGCCCTCTTACGCCCCA 61.399 66.667 0.00 0.00 0.00 4.96
726 727 3.083997 AGCCCTCTTACGCCCCAG 61.084 66.667 0.00 0.00 0.00 4.45
727 728 3.081409 GCCCTCTTACGCCCCAGA 61.081 66.667 0.00 0.00 0.00 3.86
728 729 2.901042 CCCTCTTACGCCCCAGAC 59.099 66.667 0.00 0.00 0.00 3.51
729 730 1.686110 CCCTCTTACGCCCCAGACT 60.686 63.158 0.00 0.00 0.00 3.24
730 731 1.677637 CCCTCTTACGCCCCAGACTC 61.678 65.000 0.00 0.00 0.00 3.36
731 732 1.433879 CTCTTACGCCCCAGACTCG 59.566 63.158 0.00 0.00 0.00 4.18
732 733 2.005960 CTCTTACGCCCCAGACTCGG 62.006 65.000 0.00 0.00 0.00 4.63
733 734 3.718210 CTTACGCCCCAGACTCGGC 62.718 68.421 0.56 0.56 42.05 5.54
737 738 4.475135 GCCCCAGACTCGGCCTTC 62.475 72.222 0.00 0.00 39.39 3.46
738 739 3.787001 CCCCAGACTCGGCCTTCC 61.787 72.222 0.00 0.00 0.00 3.46
739 740 3.787001 CCCAGACTCGGCCTTCCC 61.787 72.222 0.00 0.00 0.00 3.97
740 741 2.685380 CCAGACTCGGCCTTCCCT 60.685 66.667 0.00 0.00 0.00 4.20
741 742 2.726351 CCAGACTCGGCCTTCCCTC 61.726 68.421 0.00 0.00 0.00 4.30
742 743 1.984570 CAGACTCGGCCTTCCCTCA 60.985 63.158 0.00 0.00 0.00 3.86
743 744 1.684049 AGACTCGGCCTTCCCTCAG 60.684 63.158 0.00 0.00 0.00 3.35
744 745 3.378399 GACTCGGCCTTCCCTCAGC 62.378 68.421 0.00 0.00 0.00 4.26
745 746 4.168291 CTCGGCCTTCCCTCAGCC 62.168 72.222 0.00 0.00 43.53 4.85
748 749 3.424105 GGCCTTCCCTCAGCCCAT 61.424 66.667 0.00 0.00 41.00 4.00
749 750 2.194326 GCCTTCCCTCAGCCCATC 59.806 66.667 0.00 0.00 0.00 3.51
750 751 2.922234 CCTTCCCTCAGCCCATCC 59.078 66.667 0.00 0.00 0.00 3.51
751 752 2.002977 CCTTCCCTCAGCCCATCCA 61.003 63.158 0.00 0.00 0.00 3.41
752 753 1.574526 CCTTCCCTCAGCCCATCCAA 61.575 60.000 0.00 0.00 0.00 3.53
753 754 0.332632 CTTCCCTCAGCCCATCCAAA 59.667 55.000 0.00 0.00 0.00 3.28
754 755 1.009997 TTCCCTCAGCCCATCCAAAT 58.990 50.000 0.00 0.00 0.00 2.32
755 756 0.259647 TCCCTCAGCCCATCCAAATG 59.740 55.000 0.00 0.00 0.00 2.32
756 757 0.259647 CCCTCAGCCCATCCAAATGA 59.740 55.000 0.00 0.00 34.61 2.57
757 758 1.688772 CCTCAGCCCATCCAAATGAG 58.311 55.000 0.00 0.00 37.68 2.90
758 759 1.064166 CCTCAGCCCATCCAAATGAGT 60.064 52.381 0.00 0.00 36.49 3.41
759 760 2.622452 CCTCAGCCCATCCAAATGAGTT 60.622 50.000 0.00 0.00 36.49 3.01
760 761 3.371917 CCTCAGCCCATCCAAATGAGTTA 60.372 47.826 0.00 0.00 36.49 2.24
761 762 4.272489 CTCAGCCCATCCAAATGAGTTAA 58.728 43.478 0.00 0.00 34.61 2.01
762 763 4.671831 TCAGCCCATCCAAATGAGTTAAA 58.328 39.130 0.00 0.00 34.61 1.52
763 764 5.271598 TCAGCCCATCCAAATGAGTTAAAT 58.728 37.500 0.00 0.00 34.61 1.40
764 765 5.721000 TCAGCCCATCCAAATGAGTTAAATT 59.279 36.000 0.00 0.00 34.61 1.82
765 766 6.044682 CAGCCCATCCAAATGAGTTAAATTC 58.955 40.000 0.00 0.00 34.61 2.17
766 767 5.960202 AGCCCATCCAAATGAGTTAAATTCT 59.040 36.000 0.00 0.00 34.61 2.40
767 768 6.441604 AGCCCATCCAAATGAGTTAAATTCTT 59.558 34.615 0.00 0.00 34.61 2.52
768 769 7.038088 AGCCCATCCAAATGAGTTAAATTCTTT 60.038 33.333 0.00 0.00 34.61 2.52
769 770 7.278646 GCCCATCCAAATGAGTTAAATTCTTTC 59.721 37.037 0.00 0.00 34.61 2.62
770 771 7.489113 CCCATCCAAATGAGTTAAATTCTTTCG 59.511 37.037 0.00 0.00 34.61 3.46
771 772 7.489113 CCATCCAAATGAGTTAAATTCTTTCGG 59.511 37.037 0.00 0.00 34.61 4.30
772 773 6.386654 TCCAAATGAGTTAAATTCTTTCGGC 58.613 36.000 0.00 0.00 0.00 5.54
773 774 5.576774 CCAAATGAGTTAAATTCTTTCGGCC 59.423 40.000 0.00 0.00 0.00 6.13
774 775 6.389906 CAAATGAGTTAAATTCTTTCGGCCT 58.610 36.000 0.00 0.00 0.00 5.19
775 776 5.567138 ATGAGTTAAATTCTTTCGGCCTG 57.433 39.130 0.00 0.00 0.00 4.85
776 777 3.190535 TGAGTTAAATTCTTTCGGCCTGC 59.809 43.478 0.00 0.00 0.00 4.85
777 778 3.153919 AGTTAAATTCTTTCGGCCTGCA 58.846 40.909 0.00 0.00 0.00 4.41
778 779 3.572255 AGTTAAATTCTTTCGGCCTGCAA 59.428 39.130 0.00 0.00 0.00 4.08
779 780 4.038642 AGTTAAATTCTTTCGGCCTGCAAA 59.961 37.500 0.00 0.00 0.00 3.68
780 781 2.438868 AATTCTTTCGGCCTGCAAAC 57.561 45.000 0.00 0.00 0.00 2.93
781 782 0.603065 ATTCTTTCGGCCTGCAAACC 59.397 50.000 0.00 0.00 0.00 3.27
782 783 1.460273 TTCTTTCGGCCTGCAAACCC 61.460 55.000 0.00 0.00 0.00 4.11
834 835 0.958382 CCCCCAAAAGCGAATCACGA 60.958 55.000 0.00 0.00 45.77 4.35
867 868 1.750399 CCTCACCAGCAAATCCCCG 60.750 63.158 0.00 0.00 0.00 5.73
1066 1067 1.871080 CACCATCCTCGGATACAAGC 58.129 55.000 0.00 0.00 32.93 4.01
1117 1126 3.296709 TTCCTTCTCCCTCGCGTGC 62.297 63.158 5.77 0.00 0.00 5.34
1126 1139 2.575525 CTCGCGTGCGTCTCTGAG 60.576 66.667 14.47 0.00 40.74 3.35
1128 1141 2.429236 CGCGTGCGTCTCTGAGTT 60.429 61.111 6.00 0.00 34.35 3.01
1136 1149 1.079750 GTCTCTGAGTTCGTGGGGC 60.080 63.158 4.32 0.00 0.00 5.80
1183 1225 2.683859 CCAGTACGAGACGGCGTCA 61.684 63.158 37.71 17.81 44.39 4.35
1419 1461 1.947456 GCTTCTCCGGTTGTCTGTTTT 59.053 47.619 0.00 0.00 0.00 2.43
1430 1472 0.675633 GTCTGTTTTGGTGGCATGCT 59.324 50.000 18.92 0.00 0.00 3.79
1567 1626 6.114187 AGAATCGATCCATTGCTGGTTATA 57.886 37.500 0.00 0.00 43.61 0.98
1619 1691 6.292757 CCTGATGCACAATTTTCTAGATCGAG 60.293 42.308 0.00 0.00 0.00 4.04
1636 1708 6.634805 AGATCGAGTTGTCAGTTATTCATGT 58.365 36.000 0.00 0.00 0.00 3.21
1648 1720 8.892723 GTCAGTTATTCATGTTTCATCCATGTA 58.107 33.333 0.00 0.00 40.43 2.29
1712 1792 8.751242 TGCAATATATAATATGTGCTGGCATTT 58.249 29.630 0.00 0.00 33.19 2.32
1780 1860 6.779860 ACTTGTGTATACTGAATTTGGTCCT 58.220 36.000 4.17 0.00 0.00 3.85
1781 1861 6.655003 ACTTGTGTATACTGAATTTGGTCCTG 59.345 38.462 4.17 0.00 0.00 3.86
1802 1882 9.386010 GTCCTGTATGTAAATTTGTGTATGGTA 57.614 33.333 0.00 0.00 0.00 3.25
1883 2084 2.852449 TGGTAGGGATGAGGAATTGCTT 59.148 45.455 0.00 0.00 0.00 3.91
1898 2099 4.685169 ATTGCTTGGTGTATTTCTCGTG 57.315 40.909 0.00 0.00 0.00 4.35
1899 2100 3.120321 TGCTTGGTGTATTTCTCGTGT 57.880 42.857 0.00 0.00 0.00 4.49
1977 2320 9.121517 GGTGCATAATTATGATTCGAAATTCTG 57.878 33.333 26.22 1.49 35.75 3.02
1978 2321 9.882996 GTGCATAATTATGATTCGAAATTCTGA 57.117 29.630 26.22 0.00 35.75 3.27
2076 2419 1.447838 TGTGGAGGATTTCGCTCGC 60.448 57.895 0.00 0.00 0.00 5.03
2120 2463 3.117888 TCTTGTAAGATGGATTCAGGCCC 60.118 47.826 0.00 0.00 0.00 5.80
2146 2489 2.754552 AGCAAGTTGAACTGCTGTTTCA 59.245 40.909 17.24 7.34 36.39 2.69
2177 2520 9.296400 GAAGAACTGTAGTCTTCATGTTATCTC 57.704 37.037 14.39 0.00 39.52 2.75
2246 2590 2.307934 TGCTGTTTTTGCCCACTTTC 57.692 45.000 0.00 0.00 0.00 2.62
2294 2638 6.711194 AGCTATCAAATCTGATTCAGTGATGG 59.289 38.462 20.38 18.95 39.36 3.51
2307 2651 7.388776 TGATTCAGTGATGGTTTTACTCTTCTG 59.611 37.037 0.00 0.00 0.00 3.02
2308 2652 6.419484 TCAGTGATGGTTTTACTCTTCTGA 57.581 37.500 0.00 0.00 0.00 3.27
2399 2743 3.066621 AGCGCAAGAACTTGTTTGATTGA 59.933 39.130 11.47 0.00 42.31 2.57
2416 2796 9.862371 GTTTGATTGAGAAGATCTGTTAGACTA 57.138 33.333 0.00 0.00 0.00 2.59
2419 2799 6.438259 TTGAGAAGATCTGTTAGACTACCG 57.562 41.667 0.00 0.00 0.00 4.02
2466 2846 0.822532 TCTCCCGGATCGTTAGCCTC 60.823 60.000 0.73 0.00 0.00 4.70
2481 2861 2.464157 GCCTCTAGCTTGTTGTCAGT 57.536 50.000 0.00 0.00 38.99 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.883142 TGAAAAGCAAGAAGGAAATAAAAGAAA 57.117 25.926 0.00 0.00 0.00 2.52
2 3 9.696917 GATGAAAAGCAAGAAGGAAATAAAAGA 57.303 29.630 0.00 0.00 0.00 2.52
3 4 8.642020 CGATGAAAAGCAAGAAGGAAATAAAAG 58.358 33.333 0.00 0.00 0.00 2.27
4 5 8.141268 ACGATGAAAAGCAAGAAGGAAATAAAA 58.859 29.630 0.00 0.00 0.00 1.52
5 6 7.657336 ACGATGAAAAGCAAGAAGGAAATAAA 58.343 30.769 0.00 0.00 0.00 1.40
6 7 7.214467 ACGATGAAAAGCAAGAAGGAAATAA 57.786 32.000 0.00 0.00 0.00 1.40
7 8 6.817765 ACGATGAAAAGCAAGAAGGAAATA 57.182 33.333 0.00 0.00 0.00 1.40
8 9 5.712152 ACGATGAAAAGCAAGAAGGAAAT 57.288 34.783 0.00 0.00 0.00 2.17
9 10 5.514274 AACGATGAAAAGCAAGAAGGAAA 57.486 34.783 0.00 0.00 0.00 3.13
10 11 5.514274 AAACGATGAAAAGCAAGAAGGAA 57.486 34.783 0.00 0.00 0.00 3.36
11 12 5.514274 AAAACGATGAAAAGCAAGAAGGA 57.486 34.783 0.00 0.00 0.00 3.36
12 13 5.979517 AGAAAAACGATGAAAAGCAAGAAGG 59.020 36.000 0.00 0.00 0.00 3.46
13 14 6.473455 ACAGAAAAACGATGAAAAGCAAGAAG 59.527 34.615 0.00 0.00 0.00 2.85
14 15 6.329496 ACAGAAAAACGATGAAAAGCAAGAA 58.671 32.000 0.00 0.00 0.00 2.52
15 16 5.890334 ACAGAAAAACGATGAAAAGCAAGA 58.110 33.333 0.00 0.00 0.00 3.02
16 17 6.573617 AACAGAAAAACGATGAAAAGCAAG 57.426 33.333 0.00 0.00 0.00 4.01
17 18 6.811170 AGAAACAGAAAAACGATGAAAAGCAA 59.189 30.769 0.00 0.00 0.00 3.91
18 19 6.329496 AGAAACAGAAAAACGATGAAAAGCA 58.671 32.000 0.00 0.00 0.00 3.91
19 20 6.693113 AGAGAAACAGAAAAACGATGAAAAGC 59.307 34.615 0.00 0.00 0.00 3.51
20 21 8.125448 AGAGAGAAACAGAAAAACGATGAAAAG 58.875 33.333 0.00 0.00 0.00 2.27
21 22 7.985476 AGAGAGAAACAGAAAAACGATGAAAA 58.015 30.769 0.00 0.00 0.00 2.29
22 23 7.516785 CGAGAGAGAAACAGAAAAACGATGAAA 60.517 37.037 0.00 0.00 0.00 2.69
23 24 6.074302 CGAGAGAGAAACAGAAAAACGATGAA 60.074 38.462 0.00 0.00 0.00 2.57
24 25 5.402568 CGAGAGAGAAACAGAAAAACGATGA 59.597 40.000 0.00 0.00 0.00 2.92
25 26 5.402568 TCGAGAGAGAAACAGAAAAACGATG 59.597 40.000 0.00 0.00 34.84 3.84
26 27 5.529791 TCGAGAGAGAAACAGAAAAACGAT 58.470 37.500 0.00 0.00 34.84 3.73
27 28 4.928601 TCGAGAGAGAAACAGAAAAACGA 58.071 39.130 0.00 0.00 34.84 3.85
43 44 8.865001 AGAACGAAAAATAGAGAAAATCGAGAG 58.135 33.333 0.00 0.00 33.42 3.20
44 45 8.648097 CAGAACGAAAAATAGAGAAAATCGAGA 58.352 33.333 0.00 0.00 33.42 4.04
45 46 8.436200 ACAGAACGAAAAATAGAGAAAATCGAG 58.564 33.333 0.00 0.00 33.42 4.04
46 47 8.306680 ACAGAACGAAAAATAGAGAAAATCGA 57.693 30.769 0.00 0.00 33.42 3.59
47 48 8.831372 CAACAGAACGAAAAATAGAGAAAATCG 58.169 33.333 0.00 0.00 35.16 3.34
48 49 9.878599 TCAACAGAACGAAAAATAGAGAAAATC 57.121 29.630 0.00 0.00 0.00 2.17
50 51 9.716507 CTTCAACAGAACGAAAAATAGAGAAAA 57.283 29.630 0.00 0.00 0.00 2.29
51 52 8.889717 ACTTCAACAGAACGAAAAATAGAGAAA 58.110 29.630 0.00 0.00 0.00 2.52
52 53 8.433421 ACTTCAACAGAACGAAAAATAGAGAA 57.567 30.769 0.00 0.00 0.00 2.87
53 54 9.193133 CTACTTCAACAGAACGAAAAATAGAGA 57.807 33.333 0.00 0.00 0.00 3.10
54 55 8.979574 ACTACTTCAACAGAACGAAAAATAGAG 58.020 33.333 0.00 0.00 0.00 2.43
55 56 8.882415 ACTACTTCAACAGAACGAAAAATAGA 57.118 30.769 0.00 0.00 0.00 1.98
56 57 9.931210 AAACTACTTCAACAGAACGAAAAATAG 57.069 29.630 0.00 0.00 0.00 1.73
57 58 9.925268 GAAACTACTTCAACAGAACGAAAAATA 57.075 29.630 0.00 0.00 33.86 1.40
58 59 8.674607 AGAAACTACTTCAACAGAACGAAAAAT 58.325 29.630 0.00 0.00 36.40 1.82
59 60 8.036273 AGAAACTACTTCAACAGAACGAAAAA 57.964 30.769 0.00 0.00 36.40 1.94
60 61 7.605410 AGAAACTACTTCAACAGAACGAAAA 57.395 32.000 0.00 0.00 36.40 2.29
61 62 7.605410 AAGAAACTACTTCAACAGAACGAAA 57.395 32.000 0.00 0.00 36.40 3.46
62 63 7.605410 AAAGAAACTACTTCAACAGAACGAA 57.395 32.000 0.00 0.00 36.40 3.85
63 64 7.437267 CCTAAAGAAACTACTTCAACAGAACGA 59.563 37.037 0.00 0.00 36.40 3.85
64 65 7.224167 ACCTAAAGAAACTACTTCAACAGAACG 59.776 37.037 0.00 0.00 36.40 3.95
65 66 8.434733 ACCTAAAGAAACTACTTCAACAGAAC 57.565 34.615 0.00 0.00 36.40 3.01
66 67 9.457436 AAACCTAAAGAAACTACTTCAACAGAA 57.543 29.630 0.00 0.00 36.40 3.02
67 68 9.457436 AAAACCTAAAGAAACTACTTCAACAGA 57.543 29.630 0.00 0.00 36.40 3.41
80 81 9.952030 ACAAGGAAAATGAAAAACCTAAAGAAA 57.048 25.926 0.00 0.00 0.00 2.52
81 82 9.952030 AACAAGGAAAATGAAAAACCTAAAGAA 57.048 25.926 0.00 0.00 0.00 2.52
82 83 9.952030 AAACAAGGAAAATGAAAAACCTAAAGA 57.048 25.926 0.00 0.00 0.00 2.52
275 276 8.950007 TGGGAAAAGGTAGACATAAGAAAAAT 57.050 30.769 0.00 0.00 0.00 1.82
276 277 8.950007 ATGGGAAAAGGTAGACATAAGAAAAA 57.050 30.769 0.00 0.00 0.00 1.94
280 281 9.442062 TGTATATGGGAAAAGGTAGACATAAGA 57.558 33.333 0.00 0.00 0.00 2.10
284 285 8.502738 ACAATGTATATGGGAAAAGGTAGACAT 58.497 33.333 0.00 0.00 0.00 3.06
285 286 7.867921 ACAATGTATATGGGAAAAGGTAGACA 58.132 34.615 0.00 0.00 0.00 3.41
326 327 9.783081 ACTAAAAAGAAACGGAGGAAGTATAAA 57.217 29.630 0.00 0.00 0.00 1.40
327 328 9.428097 GACTAAAAAGAAACGGAGGAAGTATAA 57.572 33.333 0.00 0.00 0.00 0.98
328 329 8.810041 AGACTAAAAAGAAACGGAGGAAGTATA 58.190 33.333 0.00 0.00 0.00 1.47
329 330 7.603024 CAGACTAAAAAGAAACGGAGGAAGTAT 59.397 37.037 0.00 0.00 0.00 2.12
330 331 6.927381 CAGACTAAAAAGAAACGGAGGAAGTA 59.073 38.462 0.00 0.00 0.00 2.24
331 332 5.758784 CAGACTAAAAAGAAACGGAGGAAGT 59.241 40.000 0.00 0.00 0.00 3.01
332 333 5.334182 GCAGACTAAAAAGAAACGGAGGAAG 60.334 44.000 0.00 0.00 0.00 3.46
333 334 4.514066 GCAGACTAAAAAGAAACGGAGGAA 59.486 41.667 0.00 0.00 0.00 3.36
334 335 4.062991 GCAGACTAAAAAGAAACGGAGGA 58.937 43.478 0.00 0.00 0.00 3.71
335 336 3.813166 TGCAGACTAAAAAGAAACGGAGG 59.187 43.478 0.00 0.00 0.00 4.30
336 337 5.613358 ATGCAGACTAAAAAGAAACGGAG 57.387 39.130 0.00 0.00 0.00 4.63
337 338 8.780846 TTATATGCAGACTAAAAAGAAACGGA 57.219 30.769 0.00 0.00 0.00 4.69
338 339 8.879759 TCTTATATGCAGACTAAAAAGAAACGG 58.120 33.333 0.00 0.00 0.00 4.44
350 351 9.686683 ACTTTAACCAAATCTTATATGCAGACT 57.313 29.630 0.00 0.00 0.00 3.24
351 352 9.937175 GACTTTAACCAAATCTTATATGCAGAC 57.063 33.333 0.00 0.00 0.00 3.51
352 353 9.679661 TGACTTTAACCAAATCTTATATGCAGA 57.320 29.630 0.00 0.00 0.00 4.26
361 362 9.719355 AACAAAGTTTGACTTTAACCAAATCTT 57.281 25.926 22.23 0.00 45.84 2.40
365 366 9.984190 AGTTAACAAAGTTTGACTTTAACCAAA 57.016 25.926 22.23 0.00 45.84 3.28
366 367 9.984190 AAGTTAACAAAGTTTGACTTTAACCAA 57.016 25.926 22.23 0.00 45.84 3.67
367 368 9.984190 AAAGTTAACAAAGTTTGACTTTAACCA 57.016 25.926 22.63 0.15 45.84 3.67
443 444 9.878667 AAATTGATTTCATGATGCATCTAACAA 57.121 25.926 26.32 19.75 0.00 2.83
444 445 9.878667 AAAATTGATTTCATGATGCATCTAACA 57.121 25.926 26.32 8.26 0.00 2.41
532 533 9.936759 AGATTTGGTCAAAGTCAAACTTTTTAA 57.063 25.926 2.42 0.00 45.38 1.52
533 534 9.936759 AAGATTTGGTCAAAGTCAAACTTTTTA 57.063 25.926 2.42 0.00 45.38 1.52
534 535 8.846943 AAGATTTGGTCAAAGTCAAACTTTTT 57.153 26.923 2.42 0.00 45.38 1.94
539 540 9.076596 GCATATAAGATTTGGTCAAAGTCAAAC 57.923 33.333 2.55 0.00 35.97 2.93
540 541 8.801299 TGCATATAAGATTTGGTCAAAGTCAAA 58.199 29.630 2.55 0.00 37.29 2.69
541 542 8.347004 TGCATATAAGATTTGGTCAAAGTCAA 57.653 30.769 2.55 0.00 33.32 3.18
542 543 7.828717 TCTGCATATAAGATTTGGTCAAAGTCA 59.171 33.333 2.55 0.00 33.32 3.41
543 544 8.213518 TCTGCATATAAGATTTGGTCAAAGTC 57.786 34.615 2.55 1.51 33.32 3.01
544 545 8.757982 ATCTGCATATAAGATTTGGTCAAAGT 57.242 30.769 2.55 0.00 29.94 2.66
559 560 9.607988 TCTCCGTTTCTTTTTAATCTGCATATA 57.392 29.630 0.00 0.00 0.00 0.86
560 561 8.506168 TCTCCGTTTCTTTTTAATCTGCATAT 57.494 30.769 0.00 0.00 0.00 1.78
561 562 7.822334 TCTCTCCGTTTCTTTTTAATCTGCATA 59.178 33.333 0.00 0.00 0.00 3.14
562 563 6.655003 TCTCTCCGTTTCTTTTTAATCTGCAT 59.345 34.615 0.00 0.00 0.00 3.96
563 564 5.995282 TCTCTCCGTTTCTTTTTAATCTGCA 59.005 36.000 0.00 0.00 0.00 4.41
564 565 6.147985 ACTCTCTCCGTTTCTTTTTAATCTGC 59.852 38.462 0.00 0.00 0.00 4.26
565 566 7.659652 ACTCTCTCCGTTTCTTTTTAATCTG 57.340 36.000 0.00 0.00 0.00 2.90
566 567 8.365647 TGTACTCTCTCCGTTTCTTTTTAATCT 58.634 33.333 0.00 0.00 0.00 2.40
567 568 8.530269 TGTACTCTCTCCGTTTCTTTTTAATC 57.470 34.615 0.00 0.00 0.00 1.75
568 569 8.897872 TTGTACTCTCTCCGTTTCTTTTTAAT 57.102 30.769 0.00 0.00 0.00 1.40
569 570 8.897872 ATTGTACTCTCTCCGTTTCTTTTTAA 57.102 30.769 0.00 0.00 0.00 1.52
570 571 8.897872 AATTGTACTCTCTCCGTTTCTTTTTA 57.102 30.769 0.00 0.00 0.00 1.52
571 572 7.803279 AATTGTACTCTCTCCGTTTCTTTTT 57.197 32.000 0.00 0.00 0.00 1.94
572 573 7.803279 AAATTGTACTCTCTCCGTTTCTTTT 57.197 32.000 0.00 0.00 0.00 2.27
573 574 7.282450 ACAAAATTGTACTCTCTCCGTTTCTTT 59.718 33.333 0.00 0.00 40.16 2.52
574 575 6.766467 ACAAAATTGTACTCTCTCCGTTTCTT 59.234 34.615 0.00 0.00 40.16 2.52
575 576 6.289064 ACAAAATTGTACTCTCTCCGTTTCT 58.711 36.000 0.00 0.00 40.16 2.52
576 577 6.541111 ACAAAATTGTACTCTCTCCGTTTC 57.459 37.500 0.00 0.00 40.16 2.78
577 578 8.504005 CATTACAAAATTGTACTCTCTCCGTTT 58.496 33.333 5.53 0.00 42.84 3.60
578 579 7.360946 GCATTACAAAATTGTACTCTCTCCGTT 60.361 37.037 5.53 0.00 42.84 4.44
579 580 6.092259 GCATTACAAAATTGTACTCTCTCCGT 59.908 38.462 5.53 0.00 42.84 4.69
580 581 6.092122 TGCATTACAAAATTGTACTCTCTCCG 59.908 38.462 5.53 0.00 42.84 4.63
581 582 7.377766 TGCATTACAAAATTGTACTCTCTCC 57.622 36.000 5.53 0.00 42.84 3.71
582 583 8.454106 ACATGCATTACAAAATTGTACTCTCTC 58.546 33.333 0.00 0.00 42.84 3.20
583 584 8.340618 ACATGCATTACAAAATTGTACTCTCT 57.659 30.769 0.00 0.00 42.84 3.10
584 585 8.853345 CAACATGCATTACAAAATTGTACTCTC 58.147 33.333 0.00 0.00 42.84 3.20
585 586 8.575589 TCAACATGCATTACAAAATTGTACTCT 58.424 29.630 0.00 0.00 42.84 3.24
586 587 8.741101 TCAACATGCATTACAAAATTGTACTC 57.259 30.769 0.00 0.10 42.84 2.59
587 588 8.977505 GTTCAACATGCATTACAAAATTGTACT 58.022 29.630 0.00 0.00 42.84 2.73
588 589 8.759641 TGTTCAACATGCATTACAAAATTGTAC 58.240 29.630 0.00 0.00 42.84 2.90
589 590 8.877808 TGTTCAACATGCATTACAAAATTGTA 57.122 26.923 0.00 1.96 42.35 2.41
590 591 7.783090 TGTTCAACATGCATTACAAAATTGT 57.217 28.000 0.00 4.01 44.86 2.71
595 596 9.702494 TCAATAATGTTCAACATGCATTACAAA 57.298 25.926 3.07 0.00 37.97 2.83
596 597 9.702494 TTCAATAATGTTCAACATGCATTACAA 57.298 25.926 3.07 1.82 37.97 2.41
597 598 9.702494 TTTCAATAATGTTCAACATGCATTACA 57.298 25.926 3.07 0.00 37.97 2.41
601 602 9.872721 TGTATTTCAATAATGTTCAACATGCAT 57.127 25.926 3.07 0.00 37.97 3.96
602 603 9.702494 TTGTATTTCAATAATGTTCAACATGCA 57.298 25.926 3.07 0.00 37.97 3.96
637 638 9.719279 CTAAAAATGTTGACCGTGTACTAAAAA 57.281 29.630 0.00 0.00 0.00 1.94
638 639 8.891720 ACTAAAAATGTTGACCGTGTACTAAAA 58.108 29.630 0.00 0.00 0.00 1.52
639 640 8.436046 ACTAAAAATGTTGACCGTGTACTAAA 57.564 30.769 0.00 0.00 0.00 1.85
640 641 8.977505 GTACTAAAAATGTTGACCGTGTACTAA 58.022 33.333 0.00 0.00 0.00 2.24
641 642 8.140628 TGTACTAAAAATGTTGACCGTGTACTA 58.859 33.333 0.00 0.00 0.00 1.82
642 643 6.985645 TGTACTAAAAATGTTGACCGTGTACT 59.014 34.615 0.00 0.00 0.00 2.73
643 644 7.176285 TGTACTAAAAATGTTGACCGTGTAC 57.824 36.000 0.00 0.00 0.00 2.90
644 645 6.424509 CCTGTACTAAAAATGTTGACCGTGTA 59.575 38.462 0.00 0.00 0.00 2.90
645 646 5.237779 CCTGTACTAAAAATGTTGACCGTGT 59.762 40.000 0.00 0.00 0.00 4.49
646 647 5.334569 CCCTGTACTAAAAATGTTGACCGTG 60.335 44.000 0.00 0.00 0.00 4.94
647 648 4.758165 CCCTGTACTAAAAATGTTGACCGT 59.242 41.667 0.00 0.00 0.00 4.83
648 649 4.758165 ACCCTGTACTAAAAATGTTGACCG 59.242 41.667 0.00 0.00 0.00 4.79
649 650 6.294342 GGAACCCTGTACTAAAAATGTTGACC 60.294 42.308 0.00 0.00 0.00 4.02
650 651 6.675026 GGAACCCTGTACTAAAAATGTTGAC 58.325 40.000 0.00 0.00 0.00 3.18
651 652 6.887626 GGAACCCTGTACTAAAAATGTTGA 57.112 37.500 0.00 0.00 0.00 3.18
670 671 3.630101 CTTATAGCGAGACGAAGGGAAC 58.370 50.000 0.00 0.00 0.00 3.62
671 672 2.034305 GCTTATAGCGAGACGAAGGGAA 59.966 50.000 0.00 0.00 0.00 3.97
672 673 1.607628 GCTTATAGCGAGACGAAGGGA 59.392 52.381 0.00 0.00 0.00 4.20
673 674 2.053282 GCTTATAGCGAGACGAAGGG 57.947 55.000 0.00 0.00 0.00 3.95
684 685 4.508662 AGCCCATATTTCTCGCTTATAGC 58.491 43.478 0.00 0.00 38.02 2.97
685 686 5.112686 GGAGCCCATATTTCTCGCTTATAG 58.887 45.833 0.00 0.00 0.00 1.31
686 687 4.530553 TGGAGCCCATATTTCTCGCTTATA 59.469 41.667 0.00 0.00 0.00 0.98
687 688 3.327757 TGGAGCCCATATTTCTCGCTTAT 59.672 43.478 0.00 0.00 0.00 1.73
688 689 2.703536 TGGAGCCCATATTTCTCGCTTA 59.296 45.455 0.00 0.00 0.00 3.09
689 690 1.490490 TGGAGCCCATATTTCTCGCTT 59.510 47.619 0.00 0.00 0.00 4.68
690 691 1.071385 CTGGAGCCCATATTTCTCGCT 59.929 52.381 0.00 0.00 30.82 4.93
691 692 1.517242 CTGGAGCCCATATTTCTCGC 58.483 55.000 0.00 0.00 30.82 5.03
692 693 1.517242 GCTGGAGCCCATATTTCTCG 58.483 55.000 0.00 0.00 30.82 4.04
704 705 2.202946 GCGTAAGAGGGCTGGAGC 60.203 66.667 0.00 0.00 43.02 4.70
705 706 2.501610 GGCGTAAGAGGGCTGGAG 59.498 66.667 0.00 0.00 43.02 3.86
706 707 3.081409 GGGCGTAAGAGGGCTGGA 61.081 66.667 0.00 0.00 43.02 3.86
707 708 4.176752 GGGGCGTAAGAGGGCTGG 62.177 72.222 0.00 0.00 43.02 4.85
708 709 3.391665 CTGGGGCGTAAGAGGGCTG 62.392 68.421 0.00 0.00 43.02 4.85
709 710 3.083997 CTGGGGCGTAAGAGGGCT 61.084 66.667 0.00 0.00 43.02 5.19
710 711 3.081409 TCTGGGGCGTAAGAGGGC 61.081 66.667 0.00 0.00 43.02 5.19
711 712 1.677637 GAGTCTGGGGCGTAAGAGGG 61.678 65.000 0.00 0.00 43.02 4.30
712 713 1.817209 GAGTCTGGGGCGTAAGAGG 59.183 63.158 0.00 0.00 43.02 3.69
713 714 1.433879 CGAGTCTGGGGCGTAAGAG 59.566 63.158 0.00 0.00 43.02 2.85
714 715 2.050350 CCGAGTCTGGGGCGTAAGA 61.050 63.158 0.00 0.00 43.02 2.10
715 716 2.494918 CCGAGTCTGGGGCGTAAG 59.505 66.667 0.00 0.00 43.44 2.34
716 717 3.766691 GCCGAGTCTGGGGCGTAA 61.767 66.667 2.75 0.00 39.93 3.18
721 722 3.787001 GGAAGGCCGAGTCTGGGG 61.787 72.222 2.75 0.00 0.00 4.96
722 723 3.787001 GGGAAGGCCGAGTCTGGG 61.787 72.222 0.00 0.00 33.83 4.45
723 724 2.685380 AGGGAAGGCCGAGTCTGG 60.685 66.667 0.00 0.00 33.83 3.86
724 725 1.954362 CTGAGGGAAGGCCGAGTCTG 61.954 65.000 0.00 0.00 33.83 3.51
725 726 1.684049 CTGAGGGAAGGCCGAGTCT 60.684 63.158 0.00 0.00 33.83 3.24
726 727 2.896443 CTGAGGGAAGGCCGAGTC 59.104 66.667 0.00 0.00 33.83 3.36
727 728 3.394836 GCTGAGGGAAGGCCGAGT 61.395 66.667 0.00 0.00 33.83 4.18
728 729 4.168291 GGCTGAGGGAAGGCCGAG 62.168 72.222 0.00 0.00 36.77 4.63
732 733 2.194326 GATGGGCTGAGGGAAGGC 59.806 66.667 0.00 0.00 41.86 4.35
733 734 1.574526 TTGGATGGGCTGAGGGAAGG 61.575 60.000 0.00 0.00 0.00 3.46
734 735 0.332632 TTTGGATGGGCTGAGGGAAG 59.667 55.000 0.00 0.00 0.00 3.46
735 736 1.009997 ATTTGGATGGGCTGAGGGAA 58.990 50.000 0.00 0.00 0.00 3.97
736 737 0.259647 CATTTGGATGGGCTGAGGGA 59.740 55.000 0.00 0.00 0.00 4.20
737 738 0.259647 TCATTTGGATGGGCTGAGGG 59.740 55.000 0.00 0.00 33.93 4.30
738 739 1.064166 ACTCATTTGGATGGGCTGAGG 60.064 52.381 0.00 0.00 37.25 3.86
739 740 2.431954 ACTCATTTGGATGGGCTGAG 57.568 50.000 0.00 0.00 37.25 3.35
740 741 2.905415 AACTCATTTGGATGGGCTGA 57.095 45.000 0.00 0.00 37.25 4.26
741 742 5.603170 ATTTAACTCATTTGGATGGGCTG 57.397 39.130 0.00 0.00 37.25 4.85
742 743 5.960202 AGAATTTAACTCATTTGGATGGGCT 59.040 36.000 0.00 0.00 37.25 5.19
743 744 6.225981 AGAATTTAACTCATTTGGATGGGC 57.774 37.500 0.00 0.00 37.25 5.36
744 745 7.489113 CGAAAGAATTTAACTCATTTGGATGGG 59.511 37.037 0.00 0.00 39.27 4.00
745 746 7.489113 CCGAAAGAATTTAACTCATTTGGATGG 59.511 37.037 0.00 0.00 39.27 3.51
746 747 7.009540 GCCGAAAGAATTTAACTCATTTGGATG 59.990 37.037 2.35 0.00 39.27 3.51
747 748 7.035612 GCCGAAAGAATTTAACTCATTTGGAT 58.964 34.615 2.35 0.00 39.27 3.41
748 749 6.386654 GCCGAAAGAATTTAACTCATTTGGA 58.613 36.000 2.35 0.00 39.27 3.53
749 750 5.576774 GGCCGAAAGAATTTAACTCATTTGG 59.423 40.000 0.00 0.00 39.27 3.28
750 751 6.308766 CAGGCCGAAAGAATTTAACTCATTTG 59.691 38.462 0.00 0.00 39.27 2.32
751 752 6.389906 CAGGCCGAAAGAATTTAACTCATTT 58.610 36.000 0.00 0.00 39.27 2.32
752 753 5.622233 GCAGGCCGAAAGAATTTAACTCATT 60.622 40.000 0.00 0.00 39.27 2.57
753 754 4.142381 GCAGGCCGAAAGAATTTAACTCAT 60.142 41.667 0.00 0.00 39.27 2.90
754 755 3.190535 GCAGGCCGAAAGAATTTAACTCA 59.809 43.478 0.00 0.00 39.27 3.41
755 756 3.190535 TGCAGGCCGAAAGAATTTAACTC 59.809 43.478 0.00 0.00 39.27 3.01
756 757 3.153919 TGCAGGCCGAAAGAATTTAACT 58.846 40.909 0.00 0.00 39.27 2.24
757 758 3.569250 TGCAGGCCGAAAGAATTTAAC 57.431 42.857 0.00 0.00 39.27 2.01
758 759 4.303282 GTTTGCAGGCCGAAAGAATTTAA 58.697 39.130 0.00 0.00 39.27 1.52
759 760 3.305744 GGTTTGCAGGCCGAAAGAATTTA 60.306 43.478 0.00 0.00 39.27 1.40
760 761 2.547855 GGTTTGCAGGCCGAAAGAATTT 60.548 45.455 0.00 0.00 43.98 1.82
761 762 1.000843 GGTTTGCAGGCCGAAAGAATT 59.999 47.619 0.00 0.00 0.00 2.17
762 763 0.603065 GGTTTGCAGGCCGAAAGAAT 59.397 50.000 0.00 0.00 0.00 2.40
763 764 1.460273 GGGTTTGCAGGCCGAAAGAA 61.460 55.000 0.00 0.00 0.00 2.52
764 765 1.901464 GGGTTTGCAGGCCGAAAGA 60.901 57.895 0.00 0.00 0.00 2.52
765 766 1.743321 TTGGGTTTGCAGGCCGAAAG 61.743 55.000 0.00 0.00 0.00 2.62
766 767 1.758514 TTGGGTTTGCAGGCCGAAA 60.759 52.632 0.00 0.00 0.00 3.46
767 768 2.123683 TTGGGTTTGCAGGCCGAA 60.124 55.556 0.00 2.78 0.00 4.30
768 769 2.909965 GTTGGGTTTGCAGGCCGA 60.910 61.111 0.00 0.00 0.00 5.54
769 770 3.211564 CTGTTGGGTTTGCAGGCCG 62.212 63.158 0.00 0.00 0.00 6.13
770 771 2.736531 CTGTTGGGTTTGCAGGCC 59.263 61.111 0.00 0.00 0.00 5.19
771 772 2.736531 CCTGTTGGGTTTGCAGGC 59.263 61.111 0.00 0.00 42.54 4.85
773 774 2.736531 GGCCTGTTGGGTTTGCAG 59.263 61.111 0.00 0.00 37.43 4.41
774 775 2.841988 GGGCCTGTTGGGTTTGCA 60.842 61.111 0.84 0.00 37.43 4.08
775 776 3.625897 GGGGCCTGTTGGGTTTGC 61.626 66.667 0.84 0.00 37.43 3.68
776 777 3.302344 CGGGGCCTGTTGGGTTTG 61.302 66.667 3.48 0.00 37.43 2.93
834 835 1.002773 GTGAGGGTTTGTATGGACGGT 59.997 52.381 0.00 0.00 0.00 4.83
867 868 0.036732 TCTGTGTGGAAGTGGATGGC 59.963 55.000 0.00 0.00 0.00 4.40
992 993 1.067295 TCCCTTCACCATCTTGCTGT 58.933 50.000 0.00 0.00 0.00 4.40
1066 1067 4.154347 GGAGGGAGCTGCTCACCG 62.154 72.222 27.27 0.00 33.78 4.94
1099 1100 2.970639 CACGCGAGGGAGAAGGAA 59.029 61.111 15.93 0.00 35.60 3.36
1117 1126 1.213013 CCCCACGAACTCAGAGACG 59.787 63.158 3.79 11.75 0.00 4.18
1126 1139 2.561037 CCAACCAAGCCCCACGAAC 61.561 63.158 0.00 0.00 0.00 3.95
1128 1141 4.278513 CCCAACCAAGCCCCACGA 62.279 66.667 0.00 0.00 0.00 4.35
1183 1225 2.362369 CCCCTCGATCTGCACCAGT 61.362 63.158 0.00 0.00 32.61 4.00
1430 1472 6.346477 AGTCAGTACATCAAAGAGTAGCAA 57.654 37.500 0.00 0.00 0.00 3.91
1567 1626 5.774690 ACAACACATTCTGGATGGTAAACAT 59.225 36.000 0.20 0.00 44.18 2.71
1619 1691 7.592938 TGGATGAAACATGAATAACTGACAAC 58.407 34.615 0.00 0.00 0.00 3.32
1660 1732 9.507329 AAGTGTGTGATAAGATTTTACACTGAT 57.493 29.630 7.75 0.00 44.39 2.90
1694 1774 7.592885 AGAGAAAAATGCCAGCACATATTAT 57.407 32.000 0.00 0.00 0.00 1.28
1712 1792 4.098349 ACTGTGCAATTTGCTCAAGAGAAA 59.902 37.500 22.20 0.00 44.75 2.52
1732 1812 1.273327 GCCCATTTTCCCACTTCACTG 59.727 52.381 0.00 0.00 0.00 3.66
1824 2025 9.372369 CTCCCTCTTATTCAGTGTAAGTAAAAG 57.628 37.037 0.00 0.00 32.35 2.27
1833 2034 3.108376 GTCCCTCCCTCTTATTCAGTGT 58.892 50.000 0.00 0.00 0.00 3.55
1847 2048 2.370189 CCTACCATCATTCTGTCCCTCC 59.630 54.545 0.00 0.00 0.00 4.30
1883 2084 4.081917 TGAGCATACACGAGAAATACACCA 60.082 41.667 0.00 0.00 0.00 4.17
1951 2294 9.121517 CAGAATTTCGAATCATAATTATGCACC 57.878 33.333 18.89 9.70 33.76 5.01
2050 2393 3.365364 GCGAAATCCTCCACACTTCAAAG 60.365 47.826 0.00 0.00 0.00 2.77
2076 2419 4.923415 ACTCTGAAATGAAACCTAAGGGG 58.077 43.478 0.00 0.00 41.89 4.79
2120 2463 2.094894 CAGCAGTTCAACTTGCTATCCG 59.905 50.000 12.38 0.44 33.20 4.18
2146 2489 5.854010 TGAAGACTACAGTTCTTCACAGT 57.146 39.130 12.05 0.00 43.11 3.55
2177 2520 2.860293 GTGCGACCCACACATTCG 59.140 61.111 0.00 0.00 44.06 3.34
2246 2590 4.361451 AAATTGCAAGGATAGAACGCAG 57.639 40.909 4.94 0.00 33.48 5.18
2307 2651 8.196771 TCAAAAGGGCATACAAACATTCATATC 58.803 33.333 0.00 0.00 0.00 1.63
2308 2652 8.076910 TCAAAAGGGCATACAAACATTCATAT 57.923 30.769 0.00 0.00 0.00 1.78
2399 2743 5.127491 CCTCGGTAGTCTAACAGATCTTCT 58.873 45.833 0.00 0.00 0.00 2.85
2416 2796 0.108585 AAGTGCACATGAACCTCGGT 59.891 50.000 21.04 0.00 0.00 4.69
2419 2799 3.004024 CACAAAGTGCACATGAACCTC 57.996 47.619 24.19 0.00 0.00 3.85
2466 2846 3.368531 GGGAGGTACTGACAACAAGCTAG 60.369 52.174 0.00 0.00 41.55 3.42
2471 2851 1.809133 TGGGGAGGTACTGACAACAA 58.191 50.000 0.00 0.00 41.55 2.83
2481 2861 0.035820 GAAACGTGCATGGGGAGGTA 60.036 55.000 11.36 0.00 32.93 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.