Multiple sequence alignment - TraesCS6B01G364100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G364100 chr6B 100.000 2715 0 0 1 2715 635177494 635174780 0.000000e+00 5014
1 TraesCS6B01G364100 chr6D 88.204 2043 95 72 635 2613 421888686 421886726 0.000000e+00 2303
2 TraesCS6B01G364100 chr6D 86.930 329 18 2 36 364 421889114 421888811 2.000000e-91 346
3 TraesCS6B01G364100 chr6D 88.281 128 8 3 419 540 421888820 421888694 2.180000e-31 147
4 TraesCS6B01G364100 chr6D 95.556 90 4 0 2612 2701 421886640 421886551 7.830000e-31 145
5 TraesCS6B01G364100 chr6A 85.192 2080 111 95 596 2564 564725255 564723262 0.000000e+00 1953
6 TraesCS6B01G364100 chr6A 90.189 265 16 3 30 289 564725704 564725445 1.200000e-88 337
7 TraesCS6B01G364100 chr6A 97.115 104 3 0 2612 2715 564723154 564723051 2.780000e-40 176
8 TraesCS6B01G364100 chr6A 88.298 94 6 4 419 507 564725397 564725304 1.030000e-19 108
9 TraesCS6B01G364100 chr5D 91.587 523 28 8 943 1455 319327054 319327570 0.000000e+00 708
10 TraesCS6B01G364100 chr5D 97.403 77 2 0 1625 1701 319327570 319327646 6.100000e-27 132
11 TraesCS6B01G364100 chr4B 92.098 367 21 5 1038 1402 629748574 629748934 6.710000e-141 510


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G364100 chr6B 635174780 635177494 2714 True 5014.00 5014 100.00000 1 2715 1 chr6B.!!$R1 2714
1 TraesCS6B01G364100 chr6D 421886551 421889114 2563 True 735.25 2303 89.74275 36 2701 4 chr6D.!!$R1 2665
2 TraesCS6B01G364100 chr6A 564723051 564725704 2653 True 643.50 1953 90.19850 30 2715 4 chr6A.!!$R1 2685
3 TraesCS6B01G364100 chr5D 319327054 319327646 592 False 420.00 708 94.49500 943 1701 2 chr5D.!!$F1 758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
508 519 0.037139 AAATGCCGCACCGTAGTACA 60.037 50.0 0.0 0.0 0.0 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2382 2548 0.10212 GGTCTCGGCAGATCTGACTG 59.898 60.0 27.04 20.37 36.16 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.906660 ATTGCAAATTTCAATACTAAAAGTCGA 57.093 25.926 1.71 0.00 32.84 4.20
54 55 5.798125 TGGGCACATTACAAAATCTTTGA 57.202 34.783 6.15 0.00 0.00 2.69
119 120 1.101331 AGGTGGTAATCGAGTCGGTC 58.899 55.000 13.54 0.00 0.00 4.79
169 170 1.081892 CTGTGATGCACCACTAGCAC 58.918 55.000 13.59 0.00 45.95 4.40
170 171 0.321564 TGTGATGCACCACTAGCACC 60.322 55.000 13.59 0.00 45.95 5.01
171 172 1.026718 GTGATGCACCACTAGCACCC 61.027 60.000 3.13 0.00 45.95 4.61
172 173 1.815421 GATGCACCACTAGCACCCG 60.815 63.158 0.00 0.00 45.95 5.28
173 174 3.329542 ATGCACCACTAGCACCCGG 62.330 63.158 0.00 0.00 45.95 5.73
265 271 4.934356 ACTAATTTGTCCATCCACCACAT 58.066 39.130 0.00 0.00 0.00 3.21
272 278 4.671831 TGTCCATCCACCACATGTAATTT 58.328 39.130 0.00 0.00 0.00 1.82
279 285 3.576118 CCACCACATGTAATTTTCCCACA 59.424 43.478 0.00 0.00 0.00 4.17
286 292 7.228308 CCACATGTAATTTTCCCACACATTTTT 59.772 33.333 0.00 0.00 0.00 1.94
289 295 9.001542 CATGTAATTTTCCCACACATTTTTGAT 57.998 29.630 0.00 0.00 0.00 2.57
290 296 8.970859 TGTAATTTTCCCACACATTTTTGATT 57.029 26.923 0.00 0.00 0.00 2.57
295 301 7.432350 TTTCCCACACATTTTTGATTATTGC 57.568 32.000 0.00 0.00 0.00 3.56
296 302 6.106648 TCCCACACATTTTTGATTATTGCA 57.893 33.333 0.00 0.00 0.00 4.08
297 303 5.931146 TCCCACACATTTTTGATTATTGCAC 59.069 36.000 0.00 0.00 0.00 4.57
298 304 5.122082 CCCACACATTTTTGATTATTGCACC 59.878 40.000 0.00 0.00 0.00 5.01
299 305 5.699915 CCACACATTTTTGATTATTGCACCA 59.300 36.000 0.00 0.00 0.00 4.17
300 306 6.347563 CCACACATTTTTGATTATTGCACCAC 60.348 38.462 0.00 0.00 0.00 4.16
301 307 6.202379 CACACATTTTTGATTATTGCACCACA 59.798 34.615 0.00 0.00 0.00 4.17
302 308 6.202570 ACACATTTTTGATTATTGCACCACAC 59.797 34.615 0.00 0.00 0.00 3.82
303 309 6.202379 CACATTTTTGATTATTGCACCACACA 59.798 34.615 0.00 0.00 0.00 3.72
304 310 6.202570 ACATTTTTGATTATTGCACCACACAC 59.797 34.615 0.00 0.00 0.00 3.82
305 311 3.550950 TTGATTATTGCACCACACACG 57.449 42.857 0.00 0.00 0.00 4.49
306 312 2.772287 TGATTATTGCACCACACACGA 58.228 42.857 0.00 0.00 0.00 4.35
324 330 4.751098 ACACGACGAAATTTTAGCCAACTA 59.249 37.500 0.00 0.00 0.00 2.24
353 359 5.730568 GCGTGAAAACAAGACACAGAAGAAT 60.731 40.000 0.00 0.00 34.69 2.40
354 360 5.904080 CGTGAAAACAAGACACAGAAGAATC 59.096 40.000 0.00 0.00 34.69 2.52
355 361 5.904080 GTGAAAACAAGACACAGAAGAATCG 59.096 40.000 0.00 0.00 35.06 3.34
356 362 5.584649 TGAAAACAAGACACAGAAGAATCGT 59.415 36.000 0.00 0.00 0.00 3.73
357 363 6.093495 TGAAAACAAGACACAGAAGAATCGTT 59.907 34.615 0.00 0.00 0.00 3.85
358 364 5.659048 AACAAGACACAGAAGAATCGTTC 57.341 39.130 0.00 0.00 0.00 3.95
359 365 4.058817 ACAAGACACAGAAGAATCGTTCC 58.941 43.478 0.00 0.00 0.00 3.62
360 366 2.947852 AGACACAGAAGAATCGTTCCG 58.052 47.619 0.00 0.00 0.00 4.30
361 367 2.296471 AGACACAGAAGAATCGTTCCGT 59.704 45.455 0.00 0.00 0.00 4.69
362 368 3.057734 GACACAGAAGAATCGTTCCGTT 58.942 45.455 0.00 0.00 0.00 4.44
363 369 3.463944 ACACAGAAGAATCGTTCCGTTT 58.536 40.909 0.00 0.00 0.00 3.60
364 370 4.624015 ACACAGAAGAATCGTTCCGTTTA 58.376 39.130 0.00 0.00 0.00 2.01
365 371 4.446719 ACACAGAAGAATCGTTCCGTTTAC 59.553 41.667 0.00 0.00 0.00 2.01
366 372 4.684703 CACAGAAGAATCGTTCCGTTTACT 59.315 41.667 0.00 0.00 0.00 2.24
367 373 4.922103 ACAGAAGAATCGTTCCGTTTACTC 59.078 41.667 0.00 0.00 0.00 2.59
368 374 4.326548 CAGAAGAATCGTTCCGTTTACTCC 59.673 45.833 0.00 0.00 0.00 3.85
369 375 3.242549 AGAATCGTTCCGTTTACTCCC 57.757 47.619 0.00 0.00 0.00 4.30
370 376 2.093816 AGAATCGTTCCGTTTACTCCCC 60.094 50.000 0.00 0.00 0.00 4.81
371 377 1.565067 ATCGTTCCGTTTACTCCCCT 58.435 50.000 0.00 0.00 0.00 4.79
372 378 0.890683 TCGTTCCGTTTACTCCCCTC 59.109 55.000 0.00 0.00 0.00 4.30
373 379 0.604578 CGTTCCGTTTACTCCCCTCA 59.395 55.000 0.00 0.00 0.00 3.86
374 380 1.001181 CGTTCCGTTTACTCCCCTCAA 59.999 52.381 0.00 0.00 0.00 3.02
375 381 2.548493 CGTTCCGTTTACTCCCCTCAAA 60.548 50.000 0.00 0.00 0.00 2.69
376 382 3.479489 GTTCCGTTTACTCCCCTCAAAA 58.521 45.455 0.00 0.00 0.00 2.44
377 383 3.860968 TCCGTTTACTCCCCTCAAAAA 57.139 42.857 0.00 0.00 0.00 1.94
402 408 4.754372 AAAAGAATCGTTCCGTTTACCC 57.246 40.909 0.00 0.00 0.00 3.69
403 409 2.391616 AGAATCGTTCCGTTTACCCC 57.608 50.000 0.00 0.00 0.00 4.95
404 410 1.904537 AGAATCGTTCCGTTTACCCCT 59.095 47.619 0.00 0.00 0.00 4.79
405 411 2.093816 AGAATCGTTCCGTTTACCCCTC 60.094 50.000 0.00 0.00 0.00 4.30
406 412 1.269012 ATCGTTCCGTTTACCCCTCA 58.731 50.000 0.00 0.00 0.00 3.86
407 413 1.047002 TCGTTCCGTTTACCCCTCAA 58.953 50.000 0.00 0.00 0.00 3.02
408 414 1.415659 TCGTTCCGTTTACCCCTCAAA 59.584 47.619 0.00 0.00 0.00 2.69
409 415 2.158842 TCGTTCCGTTTACCCCTCAAAA 60.159 45.455 0.00 0.00 0.00 2.44
410 416 2.617774 CGTTCCGTTTACCCCTCAAAAA 59.382 45.455 0.00 0.00 0.00 1.94
465 473 4.847516 TCAGCGCGTCCGAATCCG 62.848 66.667 8.43 0.00 36.29 4.18
468 476 4.849329 GCGCGTCCGAATCCGACT 62.849 66.667 8.43 0.00 38.22 4.18
507 518 0.372334 CAAATGCCGCACCGTAGTAC 59.628 55.000 0.00 0.00 0.00 2.73
508 519 0.037139 AAATGCCGCACCGTAGTACA 60.037 50.000 0.00 0.00 0.00 2.90
511 522 0.249784 TGCCGCACCGTAGTACAAAA 60.250 50.000 0.38 0.00 0.00 2.44
512 523 0.164432 GCCGCACCGTAGTACAAAAC 59.836 55.000 0.38 0.00 0.00 2.43
513 524 1.500108 CCGCACCGTAGTACAAAACA 58.500 50.000 0.38 0.00 0.00 2.83
514 525 1.192980 CCGCACCGTAGTACAAAACAC 59.807 52.381 0.38 0.00 0.00 3.32
516 527 2.540931 CGCACCGTAGTACAAAACACTT 59.459 45.455 0.38 0.00 0.00 3.16
517 528 3.001533 CGCACCGTAGTACAAAACACTTT 59.998 43.478 0.38 0.00 0.00 2.66
518 529 4.494526 CGCACCGTAGTACAAAACACTTTT 60.495 41.667 0.38 0.00 0.00 2.27
519 530 5.334319 GCACCGTAGTACAAAACACTTTTT 58.666 37.500 0.38 0.00 35.15 1.94
541 552 6.771188 TTTTTCGAGCAAAAGTTCAAAACA 57.229 29.167 0.00 0.00 35.34 2.83
542 553 5.755330 TTTCGAGCAAAAGTTCAAAACAC 57.245 34.783 0.00 0.00 0.00 3.32
543 554 4.695217 TCGAGCAAAAGTTCAAAACACT 57.305 36.364 0.00 0.00 0.00 3.55
544 555 5.054390 TCGAGCAAAAGTTCAAAACACTT 57.946 34.783 0.00 0.00 35.94 3.16
545 556 4.856487 TCGAGCAAAAGTTCAAAACACTTG 59.144 37.500 0.00 0.00 34.59 3.16
546 557 4.621034 CGAGCAAAAGTTCAAAACACTTGT 59.379 37.500 0.00 0.00 34.59 3.16
547 558 5.797934 CGAGCAAAAGTTCAAAACACTTGTA 59.202 36.000 0.00 0.00 34.59 2.41
548 559 6.237201 CGAGCAAAAGTTCAAAACACTTGTAC 60.237 38.462 0.00 0.00 34.59 2.90
549 560 6.687604 AGCAAAAGTTCAAAACACTTGTACT 58.312 32.000 0.00 0.00 34.59 2.73
550 561 7.151976 AGCAAAAGTTCAAAACACTTGTACTT 58.848 30.769 4.31 4.31 40.24 2.24
551 562 7.655732 AGCAAAAGTTCAAAACACTTGTACTTT 59.344 29.630 13.27 13.27 45.42 2.66
626 643 2.380064 ACTGCAAGGGAAACAATGGA 57.620 45.000 0.00 0.00 39.30 3.41
633 650 5.306678 TGCAAGGGAAACAATGGAGTTAAAT 59.693 36.000 0.00 0.00 0.00 1.40
646 670 3.490249 GGAGTTAAATTTGCATACGGCCC 60.490 47.826 0.00 0.00 43.89 5.80
650 674 2.143876 AATTTGCATACGGCCCTTCT 57.856 45.000 0.00 0.00 43.89 2.85
660 684 0.539051 CGGCCCTTCTCAGTCAGAAT 59.461 55.000 0.00 0.00 40.55 2.40
661 685 1.472376 CGGCCCTTCTCAGTCAGAATC 60.472 57.143 0.00 0.00 40.55 2.52
708 736 4.085733 CCCCGAATCAATGCCCAATAATA 58.914 43.478 0.00 0.00 0.00 0.98
718 746 0.891904 CCCAATAATAACCCCCGCCG 60.892 60.000 0.00 0.00 0.00 6.46
757 800 4.891727 CCGTTCGATCCGGCCCTG 62.892 72.222 10.62 0.00 38.85 4.45
774 817 3.508793 GCCCTGCCACGAGTACTATATAA 59.491 47.826 0.00 0.00 0.00 0.98
776 819 4.521639 CCCTGCCACGAGTACTATATAACA 59.478 45.833 0.00 0.00 0.00 2.41
777 820 5.335740 CCCTGCCACGAGTACTATATAACAG 60.336 48.000 0.00 0.00 0.00 3.16
778 821 5.117355 TGCCACGAGTACTATATAACAGC 57.883 43.478 0.00 0.00 0.00 4.40
779 822 4.022589 TGCCACGAGTACTATATAACAGCC 60.023 45.833 0.00 0.00 0.00 4.85
780 823 4.617762 GCCACGAGTACTATATAACAGCCC 60.618 50.000 0.00 0.00 0.00 5.19
781 824 4.379186 CCACGAGTACTATATAACAGCCCG 60.379 50.000 0.00 0.00 0.00 6.13
852 898 5.701290 CGCTAAGGAAAAGGAAAGAAGAAGA 59.299 40.000 0.00 0.00 0.00 2.87
853 899 6.204882 CGCTAAGGAAAAGGAAAGAAGAAGAA 59.795 38.462 0.00 0.00 0.00 2.52
938 985 3.715097 GCAGCCAGCAGTCCTCCT 61.715 66.667 0.00 0.00 44.79 3.69
939 986 2.583520 CAGCCAGCAGTCCTCCTC 59.416 66.667 0.00 0.00 0.00 3.71
940 987 3.073735 AGCCAGCAGTCCTCCTCG 61.074 66.667 0.00 0.00 0.00 4.63
941 988 4.154347 GCCAGCAGTCCTCCTCGG 62.154 72.222 0.00 0.00 0.00 4.63
1479 1584 1.673920 ACGCACATTCAGTTCCGTTTT 59.326 42.857 0.00 0.00 0.00 2.43
1480 1585 2.286772 ACGCACATTCAGTTCCGTTTTC 60.287 45.455 0.00 0.00 0.00 2.29
1481 1586 2.307049 GCACATTCAGTTCCGTTTTCG 58.693 47.619 0.00 0.00 43.67 3.46
1502 1607 5.284864 TCGCTGATCTGTTGATTAGATGAC 58.715 41.667 1.27 0.00 38.21 3.06
1517 1622 2.103263 AGATGACCCGCCTCTGAATTAC 59.897 50.000 0.00 0.00 0.00 1.89
1526 1635 5.238650 CCCGCCTCTGAATTACGAAATAATT 59.761 40.000 0.00 0.00 44.63 1.40
1528 1637 5.621228 CGCCTCTGAATTACGAAATAATTGC 59.379 40.000 0.00 0.00 42.47 3.56
1553 1662 1.497991 TCTCTTCAACCAAACGCGAG 58.502 50.000 15.93 1.33 0.00 5.03
1572 1681 3.310774 CGAGTCAATTCCGATTGCTGATT 59.689 43.478 0.00 0.00 41.94 2.57
1719 1840 1.896660 GCAGCCGTTCCTGAACCAA 60.897 57.895 4.54 0.00 38.03 3.67
1733 1861 1.686052 GAACCAACCAGCCATGAAACA 59.314 47.619 0.00 0.00 0.00 2.83
1787 1919 2.357517 AACCAGCGACGCAGAAGG 60.358 61.111 23.70 19.06 0.00 3.46
1797 1929 2.736721 CGACGCAGAAGGAAAGAATCAA 59.263 45.455 0.00 0.00 0.00 2.57
1800 1932 2.813754 CGCAGAAGGAAAGAATCAACCA 59.186 45.455 0.00 0.00 0.00 3.67
1801 1933 3.441572 CGCAGAAGGAAAGAATCAACCAT 59.558 43.478 0.00 0.00 0.00 3.55
1804 1936 4.400567 CAGAAGGAAAGAATCAACCATCCC 59.599 45.833 0.00 0.00 0.00 3.85
1845 1984 3.441572 AGTACCAATGATGAGCAAGCAAC 59.558 43.478 0.00 0.00 0.00 4.17
1984 2128 4.846137 GTCACATGTTTATCGTTGAGCAAC 59.154 41.667 0.00 3.32 37.92 4.17
2006 2150 7.465513 GCAACTCGAAAATCATACTCCGTAATT 60.466 37.037 0.00 0.00 0.00 1.40
2015 2159 2.927553 ACTCCGTAATTCGCGTTACT 57.072 45.000 15.09 0.00 38.35 2.24
2023 2167 5.060816 CCGTAATTCGCGTTACTTCTGTTAA 59.939 40.000 15.09 0.00 38.35 2.01
2024 2168 6.237648 CCGTAATTCGCGTTACTTCTGTTAAT 60.238 38.462 15.09 0.00 38.35 1.40
2025 2169 7.168796 CGTAATTCGCGTTACTTCTGTTAATT 58.831 34.615 15.09 8.16 33.44 1.40
2026 2170 8.313227 CGTAATTCGCGTTACTTCTGTTAATTA 58.687 33.333 15.09 7.35 33.44 1.40
2027 2171 9.615779 GTAATTCGCGTTACTTCTGTTAATTAG 57.384 33.333 5.77 0.00 32.97 1.73
2028 2172 7.823149 ATTCGCGTTACTTCTGTTAATTAGT 57.177 32.000 5.77 0.00 0.00 2.24
2029 2173 7.642071 TTCGCGTTACTTCTGTTAATTAGTT 57.358 32.000 5.77 0.00 0.00 2.24
2035 2189 9.420551 CGTTACTTCTGTTAATTAGTTTCTCCT 57.579 33.333 0.00 0.00 0.00 3.69
2037 2191 9.939802 TTACTTCTGTTAATTAGTTTCTCCTCC 57.060 33.333 0.00 0.00 0.00 4.30
2102 2256 3.449737 CACCTCCCCTGATTTCGTAGTAA 59.550 47.826 0.00 0.00 0.00 2.24
2105 2267 5.901276 ACCTCCCCTGATTTCGTAGTAATAA 59.099 40.000 0.00 0.00 0.00 1.40
2135 2297 0.378257 CCTGTACATTGGCGCATCAC 59.622 55.000 10.83 0.00 0.00 3.06
2155 2317 2.240414 ACCACCATCAATCATCAGCAGA 59.760 45.455 0.00 0.00 0.00 4.26
2183 2347 5.339990 AGATTAATTTCAATTTGCGTCCCG 58.660 37.500 0.00 0.00 0.00 5.14
2185 2349 1.540267 ATTTCAATTTGCGTCCCGGA 58.460 45.000 0.73 0.00 0.00 5.14
2187 2351 1.540267 TTCAATTTGCGTCCCGGAAT 58.460 45.000 0.73 0.00 37.01 3.01
2188 2352 2.404923 TCAATTTGCGTCCCGGAATA 57.595 45.000 0.73 0.00 37.01 1.75
2190 2354 3.283751 TCAATTTGCGTCCCGGAATATT 58.716 40.909 0.73 0.00 37.01 1.28
2192 2356 4.513692 TCAATTTGCGTCCCGGAATATTAG 59.486 41.667 0.73 0.00 37.01 1.73
2194 2358 4.345859 TTTGCGTCCCGGAATATTAGAT 57.654 40.909 0.73 0.00 37.01 1.98
2195 2359 5.471556 TTTGCGTCCCGGAATATTAGATA 57.528 39.130 0.73 0.00 37.01 1.98
2196 2360 5.471556 TTGCGTCCCGGAATATTAGATAA 57.528 39.130 0.73 0.00 31.36 1.75
2197 2361 5.670792 TGCGTCCCGGAATATTAGATAAT 57.329 39.130 0.73 0.00 0.00 1.28
2239 2403 1.069636 GTTGCTGTTGCTTCTTCCTCG 60.070 52.381 0.00 0.00 40.48 4.63
2256 2420 4.188462 TCCTCGTGCAAAATAATCGATGT 58.812 39.130 0.00 0.00 0.00 3.06
2268 2433 2.310309 TCGATGTGCGATTCATGCC 58.690 52.632 0.00 0.00 45.59 4.40
2274 2439 2.253452 GCGATTCATGCCGCCATC 59.747 61.111 13.46 0.00 45.06 3.51
2298 2463 2.827921 GTTTGCTCACCCAATCAATCCT 59.172 45.455 0.00 0.00 0.00 3.24
2300 2465 1.303309 GCTCACCCAATCAATCCTCG 58.697 55.000 0.00 0.00 0.00 4.63
2360 2526 1.195115 AGCAGCTCACCGATCCTTTA 58.805 50.000 0.00 0.00 0.00 1.85
2381 2547 1.638133 CTCATCTGACGACCAAGCAG 58.362 55.000 0.00 0.00 0.00 4.24
2382 2548 0.390340 TCATCTGACGACCAAGCAGC 60.390 55.000 0.00 0.00 0.00 5.25
2383 2549 0.671472 CATCTGACGACCAAGCAGCA 60.671 55.000 0.00 0.00 0.00 4.41
2384 2550 0.390866 ATCTGACGACCAAGCAGCAG 60.391 55.000 0.00 0.00 0.00 4.24
2385 2551 1.301244 CTGACGACCAAGCAGCAGT 60.301 57.895 0.00 0.00 0.00 4.40
2416 2582 2.541556 GAGACCAAGCAACGGAGATAC 58.458 52.381 0.00 0.00 0.00 2.24
2417 2583 1.135083 AGACCAAGCAACGGAGATACG 60.135 52.381 0.00 0.00 40.31 3.06
2418 2584 0.108329 ACCAAGCAACGGAGATACGG 60.108 55.000 0.00 0.00 38.39 4.02
2419 2585 0.174845 CCAAGCAACGGAGATACGGA 59.825 55.000 0.00 0.00 38.39 4.69
2420 2586 1.404986 CCAAGCAACGGAGATACGGAA 60.405 52.381 0.00 0.00 38.39 4.30
2422 2588 3.491964 CCAAGCAACGGAGATACGGAATA 60.492 47.826 0.00 0.00 38.39 1.75
2423 2589 3.644884 AGCAACGGAGATACGGAATAG 57.355 47.619 0.00 0.00 38.39 1.73
2425 2591 4.139786 AGCAACGGAGATACGGAATAGTA 58.860 43.478 0.00 0.00 38.39 1.82
2429 2595 6.423001 GCAACGGAGATACGGAATAGTATTTT 59.577 38.462 0.00 0.00 37.43 1.82
2430 2596 7.042254 GCAACGGAGATACGGAATAGTATTTTT 60.042 37.037 0.00 0.00 37.43 1.94
2431 2597 7.941795 ACGGAGATACGGAATAGTATTTTTG 57.058 36.000 0.00 0.00 37.43 2.44
2432 2598 7.495055 ACGGAGATACGGAATAGTATTTTTGT 58.505 34.615 0.00 0.00 37.43 2.83
2433 2599 7.437267 ACGGAGATACGGAATAGTATTTTTGTG 59.563 37.037 0.00 0.00 37.43 3.33
2434 2600 7.437267 CGGAGATACGGAATAGTATTTTTGTGT 59.563 37.037 0.00 0.00 37.43 3.72
2435 2601 8.548721 GGAGATACGGAATAGTATTTTTGTGTG 58.451 37.037 0.00 0.00 37.43 3.82
2436 2602 9.095065 GAGATACGGAATAGTATTTTTGTGTGT 57.905 33.333 0.00 0.00 37.43 3.72
2437 2603 8.879759 AGATACGGAATAGTATTTTTGTGTGTG 58.120 33.333 0.00 0.00 37.43 3.82
2438 2604 6.870971 ACGGAATAGTATTTTTGTGTGTGT 57.129 33.333 0.00 0.00 0.00 3.72
2439 2605 6.664515 ACGGAATAGTATTTTTGTGTGTGTG 58.335 36.000 0.00 0.00 0.00 3.82
2445 2611 6.019779 AGTATTTTTGTGTGTGTGTGTGTT 57.980 33.333 0.00 0.00 0.00 3.32
2453 2619 3.058846 GTGTGTGTGTGTGTTTGTGTGTA 60.059 43.478 0.00 0.00 0.00 2.90
2470 2636 5.647658 TGTGTGTAATTCATGATCCAGGTTC 59.352 40.000 0.00 0.00 0.00 3.62
2471 2637 5.647658 GTGTGTAATTCATGATCCAGGTTCA 59.352 40.000 2.49 2.49 0.00 3.18
2473 2639 6.543465 TGTGTAATTCATGATCCAGGTTCATC 59.457 38.462 9.78 0.07 31.50 2.92
2474 2640 5.759763 TGTAATTCATGATCCAGGTTCATCG 59.240 40.000 9.78 6.77 31.50 3.84
2475 2641 3.912496 TTCATGATCCAGGTTCATCGT 57.088 42.857 9.78 0.00 31.50 3.73
2476 2642 3.459232 TCATGATCCAGGTTCATCGTC 57.541 47.619 9.78 0.00 31.50 4.20
2477 2643 2.765699 TCATGATCCAGGTTCATCGTCA 59.234 45.455 9.78 0.00 31.50 4.35
2478 2644 2.967599 TGATCCAGGTTCATCGTCAG 57.032 50.000 0.00 0.00 0.00 3.51
2479 2645 1.482182 TGATCCAGGTTCATCGTCAGG 59.518 52.381 0.00 0.00 0.00 3.86
2480 2646 0.179000 ATCCAGGTTCATCGTCAGGC 59.821 55.000 0.00 0.00 0.00 4.85
2483 2650 2.511600 GGTTCATCGTCAGGCCGG 60.512 66.667 0.00 0.00 0.00 6.13
2503 2670 2.322355 CAGGGTTCTGCATCGAGATT 57.678 50.000 0.00 0.00 33.86 2.40
2526 2694 1.135333 GAGAAGGAGGATGACGACACC 59.865 57.143 0.00 0.00 0.00 4.16
2534 2702 2.554462 AGGATGACGACACCGATAGATG 59.446 50.000 0.00 0.00 39.50 2.90
2585 2753 4.859629 AGAGAATTATTTGTTCGGCGTC 57.140 40.909 6.85 2.07 0.00 5.19
2690 2946 0.543749 CCACCACCCATCTCTTCTCC 59.456 60.000 0.00 0.00 0.00 3.71
2701 2957 4.163839 CCATCTCTTCTCCCAATCAGTTCT 59.836 45.833 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.176181 GTCGACTTTTAGTATTGAAATTTGCAA 57.824 29.630 8.70 0.00 0.00 4.08
4 5 7.532546 CGTCGACTTTTAGTATTGAAATTTGCA 59.467 33.333 14.70 0.00 0.00 4.08
5 6 7.742963 TCGTCGACTTTTAGTATTGAAATTTGC 59.257 33.333 14.70 0.00 0.00 3.68
6 7 9.755064 ATCGTCGACTTTTAGTATTGAAATTTG 57.245 29.630 14.70 0.00 0.00 2.32
7 8 9.755064 CATCGTCGACTTTTAGTATTGAAATTT 57.245 29.630 14.70 0.00 0.00 1.82
8 9 8.388103 CCATCGTCGACTTTTAGTATTGAAATT 58.612 33.333 14.70 0.00 0.00 1.82
9 10 7.011109 CCCATCGTCGACTTTTAGTATTGAAAT 59.989 37.037 14.70 0.00 0.00 2.17
10 11 6.311935 CCCATCGTCGACTTTTAGTATTGAAA 59.688 38.462 14.70 0.00 0.00 2.69
11 12 5.808540 CCCATCGTCGACTTTTAGTATTGAA 59.191 40.000 14.70 0.00 0.00 2.69
12 13 5.345702 CCCATCGTCGACTTTTAGTATTGA 58.654 41.667 14.70 0.00 0.00 2.57
13 14 4.025979 GCCCATCGTCGACTTTTAGTATTG 60.026 45.833 14.70 0.00 0.00 1.90
14 15 4.117685 GCCCATCGTCGACTTTTAGTATT 58.882 43.478 14.70 0.00 0.00 1.89
15 16 3.131577 TGCCCATCGTCGACTTTTAGTAT 59.868 43.478 14.70 0.00 0.00 2.12
16 17 2.492881 TGCCCATCGTCGACTTTTAGTA 59.507 45.455 14.70 0.00 0.00 1.82
17 18 1.274167 TGCCCATCGTCGACTTTTAGT 59.726 47.619 14.70 0.00 0.00 2.24
18 19 1.659098 GTGCCCATCGTCGACTTTTAG 59.341 52.381 14.70 0.00 0.00 1.85
19 20 1.001068 TGTGCCCATCGTCGACTTTTA 59.999 47.619 14.70 0.00 0.00 1.52
20 21 0.250124 TGTGCCCATCGTCGACTTTT 60.250 50.000 14.70 0.00 0.00 2.27
21 22 0.036388 ATGTGCCCATCGTCGACTTT 60.036 50.000 14.70 0.00 0.00 2.66
22 23 0.036388 AATGTGCCCATCGTCGACTT 60.036 50.000 14.70 0.00 0.00 3.01
23 24 0.821517 TAATGTGCCCATCGTCGACT 59.178 50.000 14.70 0.00 0.00 4.18
24 25 0.928229 GTAATGTGCCCATCGTCGAC 59.072 55.000 5.18 5.18 0.00 4.20
25 26 0.533032 TGTAATGTGCCCATCGTCGA 59.467 50.000 0.00 0.00 0.00 4.20
26 27 1.364721 TTGTAATGTGCCCATCGTCG 58.635 50.000 0.00 0.00 0.00 5.12
27 28 3.840890 TTTTGTAATGTGCCCATCGTC 57.159 42.857 0.00 0.00 0.00 4.20
28 29 4.016444 AGATTTTGTAATGTGCCCATCGT 58.984 39.130 0.00 0.00 0.00 3.73
54 55 2.639327 GGTGGGATTTGCTTGCGCT 61.639 57.895 9.73 0.00 36.97 5.92
240 246 3.509575 TGGTGGATGGACAAATTAGTTGC 59.490 43.478 0.00 0.00 41.31 4.17
265 271 8.970859 AATCAAAAATGTGTGGGAAAATTACA 57.029 26.923 0.00 0.00 0.00 2.41
272 278 6.426328 GTGCAATAATCAAAAATGTGTGGGAA 59.574 34.615 0.00 0.00 0.00 3.97
279 285 6.202570 GTGTGTGGTGCAATAATCAAAAATGT 59.797 34.615 0.00 0.00 0.00 2.71
286 292 2.482336 GTCGTGTGTGGTGCAATAATCA 59.518 45.455 0.00 0.00 0.00 2.57
289 295 0.862490 CGTCGTGTGTGGTGCAATAA 59.138 50.000 0.00 0.00 0.00 1.40
290 296 0.032267 TCGTCGTGTGTGGTGCAATA 59.968 50.000 0.00 0.00 0.00 1.90
291 297 0.812014 TTCGTCGTGTGTGGTGCAAT 60.812 50.000 0.00 0.00 0.00 3.56
292 298 1.019805 TTTCGTCGTGTGTGGTGCAA 61.020 50.000 0.00 0.00 0.00 4.08
293 299 0.812014 ATTTCGTCGTGTGTGGTGCA 60.812 50.000 0.00 0.00 0.00 4.57
294 300 0.306533 AATTTCGTCGTGTGTGGTGC 59.693 50.000 0.00 0.00 0.00 5.01
295 301 2.748461 AAATTTCGTCGTGTGTGGTG 57.252 45.000 0.00 0.00 0.00 4.17
296 302 3.303526 GCTAAAATTTCGTCGTGTGTGGT 60.304 43.478 0.00 0.00 0.00 4.16
297 303 3.223157 GCTAAAATTTCGTCGTGTGTGG 58.777 45.455 0.00 0.00 0.00 4.17
298 304 3.223157 GGCTAAAATTTCGTCGTGTGTG 58.777 45.455 0.00 0.00 0.00 3.82
299 305 2.873472 TGGCTAAAATTTCGTCGTGTGT 59.127 40.909 0.00 0.00 0.00 3.72
300 306 3.529634 TGGCTAAAATTTCGTCGTGTG 57.470 42.857 0.00 0.00 0.00 3.82
301 307 3.562557 AGTTGGCTAAAATTTCGTCGTGT 59.437 39.130 0.00 0.00 0.00 4.49
302 308 4.141855 AGTTGGCTAAAATTTCGTCGTG 57.858 40.909 0.00 0.00 0.00 4.35
303 309 5.467735 AGTTAGTTGGCTAAAATTTCGTCGT 59.532 36.000 0.00 0.00 38.74 4.34
304 310 5.788531 CAGTTAGTTGGCTAAAATTTCGTCG 59.211 40.000 0.00 0.00 38.74 5.12
305 311 6.084277 CCAGTTAGTTGGCTAAAATTTCGTC 58.916 40.000 0.00 0.00 38.74 4.20
306 312 6.009115 CCAGTTAGTTGGCTAAAATTTCGT 57.991 37.500 0.00 0.00 38.74 3.85
324 330 2.088423 TGTCTTGTTTTCACGCCAGTT 58.912 42.857 0.00 0.00 0.00 3.16
355 361 2.845363 TTGAGGGGAGTAAACGGAAC 57.155 50.000 0.00 0.00 0.00 3.62
356 362 3.860968 TTTTGAGGGGAGTAAACGGAA 57.139 42.857 0.00 0.00 0.00 4.30
357 363 3.860968 TTTTTGAGGGGAGTAAACGGA 57.139 42.857 0.00 0.00 0.00 4.69
465 473 0.874390 TGGCTGTTTGAATCGCAGTC 59.126 50.000 0.00 0.00 35.62 3.51
468 476 0.890542 AGCTGGCTGTTTGAATCGCA 60.891 50.000 0.00 0.00 0.00 5.10
518 529 6.422400 AGTGTTTTGAACTTTTGCTCGAAAAA 59.578 30.769 0.00 0.00 31.84 1.94
519 530 5.923684 AGTGTTTTGAACTTTTGCTCGAAAA 59.076 32.000 0.00 0.00 31.84 2.29
520 531 5.465935 AGTGTTTTGAACTTTTGCTCGAAA 58.534 33.333 0.00 0.00 0.00 3.46
521 532 5.054390 AGTGTTTTGAACTTTTGCTCGAA 57.946 34.783 0.00 0.00 0.00 3.71
522 533 4.695217 AGTGTTTTGAACTTTTGCTCGA 57.305 36.364 0.00 0.00 0.00 4.04
523 534 4.621034 ACAAGTGTTTTGAACTTTTGCTCG 59.379 37.500 0.00 0.00 35.70 5.03
524 535 6.806739 AGTACAAGTGTTTTGAACTTTTGCTC 59.193 34.615 0.00 3.49 35.70 4.26
525 536 6.687604 AGTACAAGTGTTTTGAACTTTTGCT 58.312 32.000 0.00 0.00 35.70 3.91
526 537 6.944557 AGTACAAGTGTTTTGAACTTTTGC 57.055 33.333 0.00 0.00 35.70 3.68
583 594 5.630121 ACAAGTGTTTTGTATCCATCCTCA 58.370 37.500 0.00 0.00 0.00 3.86
584 595 6.879458 AGTACAAGTGTTTTGTATCCATCCTC 59.121 38.462 0.00 0.00 37.25 3.71
585 596 6.655003 CAGTACAAGTGTTTTGTATCCATCCT 59.345 38.462 0.00 0.00 37.25 3.24
586 597 6.622896 GCAGTACAAGTGTTTTGTATCCATCC 60.623 42.308 0.00 0.00 37.25 3.51
587 598 6.072728 TGCAGTACAAGTGTTTTGTATCCATC 60.073 38.462 0.00 0.00 37.25 3.51
588 599 5.767665 TGCAGTACAAGTGTTTTGTATCCAT 59.232 36.000 0.00 0.00 37.25 3.41
617 634 7.330700 CCGTATGCAAATTTAACTCCATTGTTT 59.669 33.333 0.00 0.00 0.00 2.83
621 638 5.348164 GCCGTATGCAAATTTAACTCCATT 58.652 37.500 0.00 0.00 40.77 3.16
626 643 3.361786 AGGGCCGTATGCAAATTTAACT 58.638 40.909 0.00 0.00 43.89 2.24
633 650 0.326595 TGAGAAGGGCCGTATGCAAA 59.673 50.000 0.00 0.00 43.89 3.68
646 670 2.998316 GGGGGATTCTGACTGAGAAG 57.002 55.000 0.00 0.00 44.14 2.85
752 795 1.325355 TATAGTACTCGTGGCAGGGC 58.675 55.000 7.42 0.00 0.00 5.19
753 796 4.521639 TGTTATATAGTACTCGTGGCAGGG 59.478 45.833 7.42 0.94 0.00 4.45
754 797 5.700722 TGTTATATAGTACTCGTGGCAGG 57.299 43.478 0.00 0.00 0.00 4.85
755 798 5.154932 GCTGTTATATAGTACTCGTGGCAG 58.845 45.833 0.00 3.95 0.00 4.85
756 799 4.022589 GGCTGTTATATAGTACTCGTGGCA 60.023 45.833 0.00 0.00 0.00 4.92
757 800 4.483311 GGCTGTTATATAGTACTCGTGGC 58.517 47.826 0.00 0.00 0.00 5.01
765 808 3.094572 GGGCTCGGGCTGTTATATAGTA 58.905 50.000 7.48 0.00 38.73 1.82
766 809 1.900486 GGGCTCGGGCTGTTATATAGT 59.100 52.381 7.48 0.00 38.73 2.12
767 810 1.135083 CGGGCTCGGGCTGTTATATAG 60.135 57.143 7.48 0.00 38.73 1.31
778 821 4.842091 CGACGTAACGGGCTCGGG 62.842 72.222 12.42 0.00 41.39 5.14
817 863 2.658593 CTTAGCGGATCGGGTGCG 60.659 66.667 14.54 0.00 45.31 5.34
837 883 3.149981 CCGCCTTCTTCTTCTTTCCTTT 58.850 45.455 0.00 0.00 0.00 3.11
840 886 2.474410 TCCGCCTTCTTCTTCTTTCC 57.526 50.000 0.00 0.00 0.00 3.13
841 887 2.744741 CCTTCCGCCTTCTTCTTCTTTC 59.255 50.000 0.00 0.00 0.00 2.62
852 898 3.808218 TTGCCTTGCCTTCCGCCTT 62.808 57.895 0.00 0.00 36.24 4.35
853 899 4.284550 TTGCCTTGCCTTCCGCCT 62.285 61.111 0.00 0.00 36.24 5.52
923 970 3.073735 CGAGGAGGACTGCTGGCT 61.074 66.667 0.00 0.00 0.00 4.75
941 988 2.284515 ATTTGGATGGGGGCGAGGAC 62.285 60.000 0.00 0.00 0.00 3.85
1005 1062 0.043485 GGAACCCCTTCCTCTCCTCT 59.957 60.000 0.00 0.00 42.72 3.69
1479 1584 5.284864 GTCATCTAATCAACAGATCAGCGA 58.715 41.667 0.00 0.00 30.18 4.93
1480 1585 4.447054 GGTCATCTAATCAACAGATCAGCG 59.553 45.833 0.00 0.00 30.18 5.18
1481 1586 4.754114 GGGTCATCTAATCAACAGATCAGC 59.246 45.833 0.00 0.00 30.18 4.26
1502 1607 2.018542 TTTCGTAATTCAGAGGCGGG 57.981 50.000 0.00 0.00 0.00 6.13
1517 1622 8.420189 GTTGAAGAGAAACAAGCAATTATTTCG 58.580 33.333 0.00 0.00 36.41 3.46
1528 1637 3.791353 GCGTTTGGTTGAAGAGAAACAAG 59.209 43.478 0.00 0.00 34.09 3.16
1553 1662 3.063997 ACGAATCAGCAATCGGAATTGAC 59.936 43.478 2.44 0.00 44.25 3.18
1555 1664 3.611517 GACGAATCAGCAATCGGAATTG 58.388 45.455 0.00 0.00 44.31 2.32
1560 1669 1.273887 GCGACGAATCAGCAATCGG 59.726 57.895 0.00 0.00 43.11 4.18
1622 1733 1.817099 GGTCATCTGCAGGGAAGCG 60.817 63.158 15.13 0.00 37.31 4.68
1708 1824 0.482446 ATGGCTGGTTGGTTCAGGAA 59.518 50.000 0.00 0.00 33.16 3.36
1719 1840 1.039856 GTTGGTGTTTCATGGCTGGT 58.960 50.000 0.00 0.00 0.00 4.00
1733 1861 2.231964 TCGGTATAGCTTTCACGTTGGT 59.768 45.455 0.00 0.00 0.00 3.67
1787 1919 3.053320 AGGGAGGGATGGTTGATTCTTTC 60.053 47.826 0.00 0.00 0.00 2.62
1797 1929 2.367512 GAGGCAGGGAGGGATGGT 60.368 66.667 0.00 0.00 0.00 3.55
1800 1932 2.029892 ATCTCGAGGCAGGGAGGGAT 62.030 60.000 13.56 0.00 0.00 3.85
1801 1933 2.648613 GATCTCGAGGCAGGGAGGGA 62.649 65.000 13.56 0.00 0.00 4.20
1804 1936 1.527148 TCGATCTCGAGGCAGGGAG 60.527 63.158 13.56 0.00 44.22 4.30
1825 1957 2.754552 GGTTGCTTGCTCATCATTGGTA 59.245 45.455 0.00 0.00 0.00 3.25
1845 1984 5.317733 ACACTAGATTCTCTTCTCGTTGG 57.682 43.478 0.00 0.00 0.00 3.77
1984 2128 6.613745 GCGAATTACGGAGTATGATTTTCGAG 60.614 42.308 0.00 0.00 45.21 4.04
2006 2150 7.596248 AGAAACTAATTAACAGAAGTAACGCGA 59.404 33.333 15.93 0.00 0.00 5.87
2015 2159 6.296836 GGGGGAGGAGAAACTAATTAACAGAA 60.297 42.308 0.00 0.00 0.00 3.02
2037 2191 1.337823 CCGCGACTGAATATTAGGGGG 60.338 57.143 8.23 0.00 0.00 5.40
2043 2197 0.464036 TGCCTCCGCGACTGAATATT 59.536 50.000 8.23 0.00 38.08 1.28
2046 2200 1.091771 CAATGCCTCCGCGACTGAAT 61.092 55.000 8.23 0.00 38.08 2.57
2102 2256 6.486657 CCAATGTACAGGGATGTCGAAATTAT 59.513 38.462 10.14 0.00 0.00 1.28
2105 2267 4.199310 CCAATGTACAGGGATGTCGAAAT 58.801 43.478 10.14 0.00 0.00 2.17
2135 2297 2.927028 TCTGCTGATGATTGATGGTGG 58.073 47.619 0.00 0.00 0.00 4.61
2175 2339 7.356089 ATATTATCTAATATTCCGGGACGCA 57.644 36.000 0.00 0.00 42.20 5.24
2192 2356 7.444183 TGCTACCAGCCAACAGTTTATATTATC 59.556 37.037 0.00 0.00 41.51 1.75
2194 2358 6.654959 TGCTACCAGCCAACAGTTTATATTA 58.345 36.000 0.00 0.00 41.51 0.98
2195 2359 5.505780 TGCTACCAGCCAACAGTTTATATT 58.494 37.500 0.00 0.00 41.51 1.28
2196 2360 5.110814 TGCTACCAGCCAACAGTTTATAT 57.889 39.130 0.00 0.00 41.51 0.86
2197 2361 4.019681 ACTGCTACCAGCCAACAGTTTATA 60.020 41.667 0.00 0.00 43.02 0.98
2239 2403 3.679725 TCGCACATCGATTATTTTGCAC 58.320 40.909 0.00 0.00 43.16 4.57
2268 2433 2.745884 TGAGCAAACCCGATGGCG 60.746 61.111 0.00 0.00 33.59 5.69
2298 2463 1.026182 GTGGCCAATGACATGAGCGA 61.026 55.000 7.24 0.00 0.00 4.93
2300 2465 1.669999 GGGTGGCCAATGACATGAGC 61.670 60.000 7.24 2.07 0.00 4.26
2360 2526 0.247736 GCTTGGTCGTCAGATGAGGT 59.752 55.000 0.00 0.00 0.00 3.85
2382 2548 0.102120 GGTCTCGGCAGATCTGACTG 59.898 60.000 27.04 20.37 36.16 3.51
2383 2549 0.323816 TGGTCTCGGCAGATCTGACT 60.324 55.000 27.04 0.00 36.16 3.41
2384 2550 0.532573 TTGGTCTCGGCAGATCTGAC 59.467 55.000 27.04 23.34 29.98 3.51
2385 2551 0.820226 CTTGGTCTCGGCAGATCTGA 59.180 55.000 27.04 4.58 29.98 3.27
2416 2582 6.577055 CACACACACACAAAAATACTATTCCG 59.423 38.462 0.00 0.00 0.00 4.30
2417 2583 7.378461 CACACACACACACAAAAATACTATTCC 59.622 37.037 0.00 0.00 0.00 3.01
2418 2584 7.913297 ACACACACACACACAAAAATACTATTC 59.087 33.333 0.00 0.00 0.00 1.75
2419 2585 7.767261 ACACACACACACACAAAAATACTATT 58.233 30.769 0.00 0.00 0.00 1.73
2420 2586 7.328277 ACACACACACACACAAAAATACTAT 57.672 32.000 0.00 0.00 0.00 2.12
2422 2588 5.637006 ACACACACACACACAAAAATACT 57.363 34.783 0.00 0.00 0.00 2.12
2423 2589 6.144724 ACAAACACACACACACACAAAAATAC 59.855 34.615 0.00 0.00 0.00 1.89
2425 2591 5.050499 CACAAACACACACACACACAAAAAT 60.050 36.000 0.00 0.00 0.00 1.82
2429 2595 2.359214 ACACAAACACACACACACACAA 59.641 40.909 0.00 0.00 0.00 3.33
2430 2596 1.950216 ACACAAACACACACACACACA 59.050 42.857 0.00 0.00 0.00 3.72
2431 2597 2.287308 ACACACAAACACACACACACAC 60.287 45.455 0.00 0.00 0.00 3.82
2432 2598 1.950216 ACACACAAACACACACACACA 59.050 42.857 0.00 0.00 0.00 3.72
2433 2599 2.697431 ACACACAAACACACACACAC 57.303 45.000 0.00 0.00 0.00 3.82
2434 2600 5.048713 TGAATTACACACAAACACACACACA 60.049 36.000 0.00 0.00 0.00 3.72
2435 2601 5.394802 TGAATTACACACAAACACACACAC 58.605 37.500 0.00 0.00 0.00 3.82
2436 2602 5.629079 TGAATTACACACAAACACACACA 57.371 34.783 0.00 0.00 0.00 3.72
2437 2603 6.261859 TCATGAATTACACACAAACACACAC 58.738 36.000 0.00 0.00 0.00 3.82
2438 2604 6.442513 TCATGAATTACACACAAACACACA 57.557 33.333 0.00 0.00 0.00 3.72
2439 2605 6.582295 GGATCATGAATTACACACAAACACAC 59.418 38.462 0.00 0.00 0.00 3.82
2445 2611 5.569355 ACCTGGATCATGAATTACACACAA 58.431 37.500 0.00 0.00 0.00 3.33
2453 2619 4.785301 ACGATGAACCTGGATCATGAATT 58.215 39.130 22.32 0.47 37.64 2.17
2503 2670 1.743958 GTCGTCATCCTCCTTCTCGAA 59.256 52.381 0.00 0.00 0.00 3.71
2585 2753 0.401738 TTTTCTCTGCAGAGGGGTGG 59.598 55.000 36.92 16.83 42.30 4.61
2690 2946 0.813184 AATGGCGCAGAACTGATTGG 59.187 50.000 10.83 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.