>input_sequence_70878
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----------------ATGGAAGAGGAGAGGAAGGGGTTCCAGCCCCACCTGAT----GGGCCTGGGCGGCGGG---AGG
CTGAGGGGCGCGGCGGGGGCGATGGGCCTGCAGAAGCAGAACTCGTGGTCGCCCGACATCGAGCGGGACGAGGCGTGGGA
GCGGCGGCGGCGCGGGATACTGGCCAGGGGCCGCCGCTCGCCGCTGCAGCGCGCGCAGAGCGTCACCGACGACCAGCTCG
ACGAGCTGCGCGGCTCCCTCGATCTGGGCTTCCGCTTCGACCCGCCCTCGCAGCGCTGCGCCGCCTGCGACGCCGGGAGG
AGCCGCCTCGTCGAGACGCTCCCGGCGCTCGACCTCCTCTACGCCGTCGCCGCCAACGCTAACGCCGGGGGCTGCGCGGC
C------------AGCCAGTGCTCCTGCGGCGCCTCCTCGGAGGCCTCCGAGCCGTCGCCGATCGGGAGCCCCCTCTCCA
TACTCTCCCCAGGTACGCACATTCA-----------------------------GTTCCGTTTTCGCTGATCTGTTGATT
AGATGACCCGCCTCTGAATTACGAAA----TAATTGCTTGTTTCTCTTCAACCAAACGCGAGTCAATTCCGATTGCTGAT
TCGTCGCGGGTCAGCGCGATTGGAG-TTTTGATCTGACTTTTC-GGCGGCGGCG-----CTTCCCTGCAGATGACCCGCC
GGAGACGGTGAAGATGAGGCTGAAGCAGTGGGCGCAGGTGGTGGCGCTGTCCATGCGCAGCCGTTCCTG-----A-----
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>chr6B_1_TraesCS6B01G364100
AGATTGCAAATTTCAATACTAAAAGTCGACGATGGGCACATTACAAAATCTTTGAGCGCAAGCAAATCCCACCGGCCTGA
CATAATCACGCACGTCGGTTAGGTGGTAATCGAGTCGGTCGTCGCAAACAGGCGCCCTTCACCCTCTCCACTGTGATGCA
CCACTAGCACCCGGCCGGCCGGCCGGCGGTGGTTACATTCGTGTGATGCACTCGCCAA-----CTAAATTATTCCCGAGG
AATTAGCAACTAATTTGTCCATCCACCACATGTAATTTTCCCACACATTTTTGATTATTGCACCACACACGACGAAATTT
TAGCCAACTAACTGGCGTGAAAACAAGACACAGAAGAATCGTTCCGTTTACTCCCCTCAAAAAAAAAAAAGAATCGTTCC
GTTTACCCCTCAAAAAAAAAGTTCGTTCCGTTTTACGCGCCGCACGCGAGAATTCAGCGCG--TCCGAATCCGACTGCGA
TT---CAAACAGCCAGCTCAAATGCCGCACCGTAGTACAAAACACTTTTTTTTCGAGCAAAAGTTCAAAACACTTGTACT
TTTATTTTTGAGGATACAAAACACTTTTTTTTTTGAGGATGGATA------CAAAACACTTGTACTGCAAGGGAAACAAT
GGAGTTAAAT-------TTGCATACGGCCCTTCTCAGTCAGAATC----CCCCCCGGCCCACGTTCCCCGTGACCCCGAA
TCAATGCCCAATAATAACCCCCGCCGTAGCAGTTGGAAGAAATCCAGCCGTTCGATCC---------------GGCCCTG
CCACGAGTACTATATAACAGCCCGAGCCCGTTA--CGTCGGCCGA-CGCCCGCCCGCCCGCCCGCACCCGATCCGCTAAG
GAAAAGGAAAGAAGAAGAAGGCGGAAGGCAAGGCA-AGGCAGGCCGAGGGAGATAAATTACTCCACCCCGGCCACTCGCC
CCCGGCAGCAGCCAGCAGTCCTCCTCGGTCCTCGCCCCCATCCAAATCCCCCGCCGCCCCCCTCGC----GGAGG-----
-AGGAGGCCGGCGGCCATGGAAGAGGAGAGGAAGGGGTTCCAGCCCCACCTGAT----GGGCCTGGGCGGCGGG---AGG
CTGAGGGGCGCGGCGGGGGCGATGGGCCTGCAGAAGCAGAACTCGTGGTCGCCCGACATCGAGCGGGACGAGGCGTGGGA
GCGGCGGCGGCGCGGGATACTGGCCAGGGGCCGCCGCTCGCCGCTGCAGCGCGCGCAGAGCGTCACCGACGACCAGCTCG
ACGAGCTGCGCGGCTCCCTCGATCTGGGCTTCCGCTTCGACCCGCCCTCGCAGCGCTGCGCCGCCTGCGACGCCGGGAGG
AGCCGCCTCGTCGAGACGCTCCCGGCGCTCGACCTCCTCTACGCCGTCGCCGCCAACGCTAACGCCGGGGGCTGCGCGGC
C------------AGCCAGTGCTCCTGCGGCGCCTCCTCGGAGGCCTCCGAGCCGTCGCCGATCGGGAGCCCCCTCTCCA
TACTCTCCCCAGGTACGCACATTCA-----------------------------GTTCCGTTTTCGCTGATCTGTTGATT
AGATGACCCGCCTCTGAATTACGAAA----TAATTGCTTGTTTCTCTTCAACCAAACGCGAGTCAATTCCGATTGCTGAT
TCGTCGCGGGTCAGCGCGATTGGAG-TTTTGATCTGACTTTTC-GGCGGCGGCG-----CTTCCCTGCAGATGACCCGCC
GGAGACGGTGAAGATGAGGCTGAAGCAGTGGGCGCAGGTGGTGGCGCTGTCCATGCGCAGCCGTTCCTG-----AACCAA
CCAGCCATGAA-------ACACCAACGTGAAAGCTATACCGAATTCAGAGGAGGGACAACCAGC----GACGCAGAAGGA
AAGAATCAACCATCCCTCCCTGCCTCGAGATCGAAGT----ACCA---ATGATGAGCAAGCAACCAACGAGAAGAGAATC
TA----GTGTCGTCGGACGATCGGCCAGCCGCCTTCCACATCTGCTCTCGCATCGCATCTTGGACTAGCTATAGC-TTAG
CCTGCTGCTACTAATCGACTTTCTGTCACATGTTTATCGTTGAGCAACTCGAAAATCATACTCCGTAATTCGCGTTACTT
CTGTTAATTAGTTT----------CTCCTCCCCCCTAATATTCAGTCGCGGAGGCATTGCTTCCGTTAGTAGTCACCTCC
CCTGATTTCGTAGTAA--------TAATTTCGACATCCCTGTACATTGGCGCATCACCACCATCAATCATCAGCAGATAG
--TAGATTAATTTCAATTTGCGTCCCGGAATATTAGATAATATAAACTGTTGGCTGGTAGCAGTTGCTGTTGCTTCTTCC
TCGTGCAAAATAATCGATGT-GCGATTCATGCCGCCATCGGGTTTGCTCACCCAATCAATCCTCG-CTCATGTCATTGGC
CACCCGATCAAGCAACAGCAATCTGAAGCAGCTCACCGATCCTTTACCTCATCTGACGACCAAGCAGCAGTCAGATCTGC
CGAGACCAAGCAACGGAGATACGGAATAGTATTTTTGTGTGTGTGTGTGTTTGTGTGTAATTCATGATCCAGGTTCATCG
TCAGGC-CGGCAGGGTTCTGCATCGAGATTTCGAG-AAGGAGGATGACGACACCGATAGATGCTGTACCACCATCCTTTC
TGCAGTGGTGAAGAGAATTATTTGTTCGGCGTCCACCCCTCTGCAGAGAAAATTCCCTTT--------------------
--------------------------------------------------------------------GGCTGTCCCTCT
CTGTCGTCGTCTCGGCACGGCGAGCTGTCCACCGTAGCTGTCAGTGCCACCACCCATCTCTTCTCCCAATCAGTTCTGCG
CCATTCTACC
>chr6A_30
-----------------------------CGATGGGCACATTACAAAATCTTTGCGCGCAAGCAAATCCCACCGGCCTGA
CATAATCGCGCACGTCGGTTAGGTGGTAATCGAGTCGGTTGTCGCAAACAGGCGCCCTTCACCCTCTCCACTGTGATGCG
CCACTAGCA-----CCGGCCGGCCGGCGGTGGTTACGTTCGTGTGATGCACTCACCAACTAAGCTGATTTATTCCCGAGG
AACTACCAACCAATTCGCCCATCCACGACACGTAATTCTCCCACGCATTTTCGA------------------CGGGATTT
TAGCCAACTGACCGGCGTGAAAACAAGACACGGAAGAAC-----------------------------------------
-----------------------CGTTCCGTTTTACCCGCCGCACGCGAGGATTCAGGGGGGATCCGAATCCAACCGCGA
TGATACAAACAGCCAGCTCAAATGCCGCACCGTAGTAGTAATACGTAG--------------------------------
--------------TACAAAACACCTTTTTTTTCTTCTTTGAGCAAAAGTTCAAAACACTTGTACTGCAAGGGGAACGAT
GGGGTTAAAAGTTGGGGTTGCATACGGCCGTTCCCAGTCAGAAAGAATTCCCCCCGGCCCACGTTCCCCGTGACCCCGAA
TCAATGCCCAATAATGAGCCCCGCCCTAGCAGCCGGAGGAAATCCCACCGTTCGTTCCGTCCGCCAGGGCCACGCAT---
CCACGAGGGGTATATATC------AGCCCGTTATGCGTCGGCGGA-CGCCCGCAG-------AGCACCCGATCCGCTAAG
GAGAA--AAAGAAGAAGGCGGCGGAAGGCAAGGCAGAGGCAGGCCGAGGGAGATAAATTACTCCACCCCGGCCACTCGCC
CCCGGCAGCGGCCAGCAGTCC-------TCCCCGCCCCCACCCAAATCCCCCGCCGCCCCCCCTCGCGGAGGAGG-----
-AGGAGGCCGGCGGCCATGGAGGAGGAGAGGAAGGGGTTCCAGCCCCACCTGAT----GGGCCTGGGCGGCGGGAGCAGG
CTGAGGGGCGCGGCGGGGGCGATGGGCCTGCAGAAGCAGAACTCGTGGTCGCCCGACATCGAGCGGGACGAGGCGTGGGA
GCGGCGGCGGCGCGGGATTCTCGGCAGGGGCCGCCGCTCGCCGCTGCAGCGCGCGCAGAGCGTCACCGACGACCAGCTCG
ACGAGCTGCGCGGCTCCCTCGATCTGGGCTTCCGCTTCGACCCGCCCTCGCAGCGCTGCGCCGCCTGCGACGCCGGCAGG
AGCCGCCTCGTCGAGACGCTCCCGGCGCTCGACCTCCTCTACGCCGTCGCCGCCAACGCCAACGCCGGGGGCTGCGCCGG
CGCGGCCAGTCA---CCAGTGCTCCTGCGGCGCCTCCTCGGAGGCCTCCGAGCCGTCGCCCATCGGGAGCCCCCTCTCCA
TACTCTCCCCAGGTACGCACATTCAGTTCGGTTTCAGATTTCAGCAGAGTTCTGGTTCGGTCTCATCTGATCTGTTGATT
AGATTAGACGAGCGGTCTCTGAA-----------------TTTCTCTTCAACCAAACCCGAATAAATTTCGATTGTT---
------------AGAGCGATTGGAACTTTTGATCTGACTTTTC-GGCGGCGGTGCTTCCCTTCCCTGCAGATGACCCGCC
GGAGACGGTGAAGATGAGGCTGAAGCAGTGGGCGCAGGTGGTGGCGCTGTCCATGCGCAGCCGCTCCTGAACCAAACCAC
CCAGCCATGAA-------ACGCCAACGTGAAAGCCATACCGAATTCAGAGGAGGGACAACAACCAGCAGACGCAGAAGAA
AAGAATCATCCCCCCATCCCTGCCTCGAGATCGAAGAAGCAACCAATGATGATGAGCAAGCAAGCAACGAGAAGAGAATC
TACCAGGTGTCGTCGGGCGATCGGCCGGCCGCCTTCCACATCTGCTCTCGCATCGCATCTTGGACTAGCTATAGCTTTAG
CCTGCTGCTGCTAATCGACTTTGTGTCACATGTTTATCGTTGAGCAATTCGAAACT-ATACTCCGTAATCCGCACTCCCC
CTGTTATAATTAGCTCCTCCTCCCCTCCCCTCCGCTGATCTTCAGCCGCGGCGGCATTGCTTCCGTTAGTAGTCACCTCC
CCTGATTTCGTAGCAGTAATAATTTACTTTCGACATCTCTGTACATTG-CGCATCATCGCCATCAATCATCAGCAGGTAG
ATTAGATTAATTTCAATTCGCGTTCGTGGAATTGATA----ATAAACTGTTGCCTGGTAGCAGTTGCTGTTGCTTCTTCC
CCTTGCAAAATAATTTGACCAGCGATGGGTGCTGCCATTGGGTTTGCTCACCCAATCAATCCCCCCCTCGTGTCATTGGC
CACCCGATCAAGCAACAGCAATCTGAAGCAGCTCACCGATCCTTTGCCTCATCTGCAATCAG---------CAGATCTGC
CGAGACCAAGCAACGGAGATAGATTTTTTT---------------TGTATGTGTGTGTGATTCATGATCCAGGT------
---------ACAGGGTTCTGCATCGAGAT-TCGAG-AAGGAGGATGACGACACGGATAGATACTGTGCCACCATCCTTTC
TGCAGCGGTGAGG----------------------------TGCAGAGAAAATTCCCTTTCTCGCGAATGACGGGACAGG
CTGTGGTCCGCCCGGCCATGGCCCCCGTATGGGAACGGGAGGAAGCGAGATGGAGAGCAGGTTTCGTTGGCTGTCCCTCT
CTGTCGTCGTCTCGGCACGGCGAGCTGTCCGCCGTAGCTGTCAGTGCCACCACCCATCTCTTCTCTCAATCAGTTCCGCG
CCATTCTACC
>chr6D_36
GCACATTGT-----------------------------------AAAATCTTTGCGCGCAAGCAAATCCCACCGGCCTGA
CATAATCACGCACGTCGGTTAGGTGGTAATCGAGTCGGTTGTCGCAAACAGGCGCCCTTCACCCTCTCCACCGTGATGCA
CCACTAG-------CCGGCCGGCCGGCGGTGGTTACGTCCGTGTGATGCACTCGCTAA-----CTAAATTATTCCCGAGG
CATTACCAACTAATTTGTCCATCCACCACACGTAATTCTCCCACGCATTTTCGA------------------CGAAATTT
TAGCTAACTGACTGACGTGAAAACAAGACACAGAAGAAC-----------------------------------------
-----------------------CGTGCCGTTTTACCCGCCGCACGCGAGGATTCAGCGCG--TCCGAGTCCAACCGCGG
TT---CAAACAGCCAGCTCAAATGCCGCACCGTAGC----------AG--------------------------------
--------------TACAAAACACCTTTTTTT----CTTTGAGCAAAAGTTAAAATTTGGA-------------------
----------------GTTGCATACGGCCGTTCCCAGTCAGAAAGAATTCCCCCCGGCCCACGTTCCCCGTGACCCCGAA
TCAATGCCCAATAATGACCCCCGCCCTAGCACTTGGAAGAAATCCCACCGTTGGATCC---------------GCAT---
CCACGA---GTATATATC------AGCCCGTTA--CGTCGGCAGCCCGCCCGCCCGGCCGCCAGCACCCGATCCGCTAAG
GAGAA--AA-GAAGAAGGCGGCGGAAGGA-----A-AGGCAGGCCGAGGGAGATAAATTACTCCACCCCGGCCACTCGCC
CCCGGCAGCGGCCAGCGGTCC-------TCCTCGCCCCCATCCAAATCCCACGCCGTCCCCCTCGC-------GG-----
-AGGAGGCCGGCGGCCATGGAGGAGGAGAGGAAGGGGTTCCAGCCCCATCTGAT----GGGCCTGGGCGGCGGGGGCAGG
CTGAGGGGCGCGGCGGGGGCGATGGGCCTGCAGAAGCAGAACTCGTGGTCGCCCGACATCGAGCGCGACGAGGCGTGGGA
GCGGCGGCGGCGCGGGATTCTCGGCCGGGGCCGCCGCTCGCCGCTGCAGCGCGCGCAGAGCGTCACCGACGACCAGCTCG
ACGAGCTGCGCGGCTCCCTCGATCTGGGCTTCCGCTTCGACCCGCCCTCGCAGCGCTGCGCCGCCTGCGACGCCGGCAGG
AGCCGCCTCGTCGAGACGCTCCCGGCGCTCGACCTCCTCTACGCCGTCGCCGCCAACGCCGGCGCCGGTGCCGGCGGCTG
CGCGGCCGGCCAGAGCCAGTGCTCTTGCGGCGCCTCCTCGGAGGCCTCCGAGCCGTCGCCCATCGGGAGCCCCCTCTCCA
TACTCTCCCCAGGTACGCACATTCA-----------------------------GTTCCGTTTCATCTGATCTGTTGATT
AGATGAACAACCTCTGAATTATGAAATAAGTAATCGATTGTTTCTT----ACCAAACGCGAATAGATTTTGATTGCTGAT
CCGTCGCGGGTCGGCGCGATTGGAG-TTTTGATCTGACTTTTTTGGCGGCGGTGCTTCACTTCCCTGCAGATGACCCGCC
GGAGACGGTGAAGATGAGGCTGAAGCAGTGGGCGCAGGTGGTGGCGCTGTCCATGCGCAGCCGCTCCTGAACCAACCAGC
CATCAACAACTCCGTGGTACGCCAACGTGAAAGCTATACCGAATTCAGAGGAGGGACAACCAGC----GACGCAGAAGAA
AAGAATCATCCC----TCCCTGGCTCGAGATCGAAGAAGCAACCA---ATGATGAGCAAGCAAGCAACGAGAAGAGAATC
TATTAGGTGTCGTCGGACGATCGGCCAGCCGCCTTCCACATCTGCTCTGGCATCGCATCTTGGACTAGCTATAGC-TTAG
CCTGCTGCTACTAATCGACTTTCTGTCACATGTTTATCGTTGAGCAATTCGAAAACCATACTCCGTAATCCGCGTTACCT
CTGTTATAATTAGTTCCT-----CCTCCCCTCCCCTGATCTTCAGTCGCGGAGGCATTGCTTCCGTTAGTAGTTACCTCC
CCTGATTTCGTCGTAGTAATAA-----TTTCGACATCCCTGTACATTGGCGCATCATCACCATCAATCATCAGCAGGTAG
ATTAGATTAATTTTAATTCGCGTTCCTGGAATTGATA----ATAAACTGTTGGCTGGTAGCAGTTGTTGTTGCTTCTTCC
TCTTGCAAAATAATCGATGG-GCGATGGATGCTGCCATTGGGTTTGCTCACCAAATCAAT-CCCCCCTCATGTCATTGGC
CACCCGATCAAGCAACAACAATCTGAAGCAGCTCGCCGATCCTTTGCCTCATCTGACGACCAAGCA--------------
------------ACGGGGATAGATTTTTTTTTTT-----------TGTGTGTGTGTGTGAATCATGATCTAGGTTTTTAT
GACCAGGCGACAGGGTTCTGCGTCGAGAT-TCGAGAAAGGAGGATGACGACACGGATAGATACTGTACCACCATCCTTTC
TGCAGTGGTGAAGAGAATTATTTGTTCGGCGTTCACCCCTCTGCAGAGAAAATTCCCTTTATCGCGAATGATGGGACAGG
CTGTGGTCCGCCTGGCCCCGGA-CCCGTATGGGAACGGGAGGAAACGAGATGGAGAGCAGGTTTCGTTGGCTGTCCCTCT
CTGTCGCCGTCTCGGCACGGCTAGCTGTCCACCGTAGCTGTCAGTGCCACCACCCATCTCTTCTCTCAATCAGCTC----
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>chr5D_943
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----------------------------TCCTCGCCCCCATCCAAATCCCCCGCCGCCCCCCTCGT-------GGAGGAG
GAGGAGGCTGGCGGCCATGGAGGAGGAGAGGAAGGGGTTCCAGCCTGCGAGGAGGAGAGGGCCTGGGCGGCGGGGGCAGG
TTGAGGGGCGCGGCGGGGGCGATGGGCCTGCAGAAGCAGAATTCGTGGTCGCCCGACATCGAGTTGGACGAGGCGTGGGA
GCGGCGGCGGCGCGGGATACTGGGCAGGAGCCGCCGCTCGCCGCTGCAGCACGCGCAGAGCGTCACCGACGACCAGCTCG
ACAAGCTACGCGGCTCCTTCGATCTGGGCTTCCGCTTCAACCCGCCCTCGCAGCGCTGCGCCGCCTGCGACGCCGGTAGG
AGCCGCCTCGTCGAGACGCTCCCGGCGCTCGACCTTCTCTACGCCATCGCCGCCAACACCAACGCCGGCGCA------GC
C------------AGCCAGTGCTCCTGCAGCACCTCCTCGGAGGCCTCCGAGCTGTCGCCGATCGGGAGCCCCCTCTCCA
TACTCTCC------------------------------------------------------------------------
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----------------------------------------------------------CCTTCCGTGCAGATGACCCGCC
GGAGACGGTGAAGATGAGCCTGAAGCAGTGGGCGCAGGTGGTGGCGCTGTCCATGC------------------------
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>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------S-------------------------
---------------------------------------S----------------------------------------
---------SSSSS----------------------S-------------------------------------------
-----S------------------------S------S------S------S--SSSSSSSSSSSSSSSSSS--------
---------S----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS-------------S-------------S---------------------S--S----
-------------------------------------SS--SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS----------S--------SSSSSS--SSS-----------------------------S---S--
--S------S-------------------S---S---------SS-----------------------------------
---------------S---------S-------------------SS---------------------------SSSSSS
-------SSS------S-SSSSSS------------------S-------------S-----S-----------------
--S--SS----------SS-------------------------------------------------------------
---------S-----------SSSSSSS----------------------------------------------------
---------------------S----------------------------------------------------------
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-----------------------S--------------------------------------------------------
----------------------------------------------------------------------------S---
-----------------------------------------------------------S-----------------S--
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---------------------------------------------------------------SSS--------------
------S--------------S------------S-S------------------------S-S----S-----------
S---------------------------------------------------S---------------------------
---------------------------------------------------------------S---------------S
--------------------S---------------------------------------------------------S-
--------S--SS--S--------------------S--------------------------S----------------
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-----------------------------------------------S---------------------S--------S-
------SSSSSSS---------------S-S-----S--S----------------------------------------
---------------S----------S-----------------------------S-------------------S---
------------------S----S--S-S-SS-S-S-SSSS---------------------------------------
--S----------------S------SS----S-----S-----------------------S-S---------------
---------------------------------------------S--------------------SSSSS---------
---------------------SSSSS-SS-S---SSSSSSSSSSS-----S-------S----------------SS-SS
SSSSSS---S-------------------S-----------------------S-------S------------------
--------------------------------S-----------------------------------------------
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-----------------------------------------------------------------S----------S---
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>forward_519
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-------------------AAATGCCGCACCGTAGTACA-----------------------------------------
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>reverse_2548
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-------------------------------------------------------------------CAGTCAGATCTGC
CGAGACC-------------------------------------------------------------------------
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