Multiple sequence alignment - TraesCS6B01G358900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G358900 chr6B 100.000 2330 0 0 1 2330 630466913 630464584 0.000000e+00 4303
1 TraesCS6B01G358900 chr6B 90.196 408 40 0 976 1383 630529582 630529175 1.230000e-147 532
2 TraesCS6B01G358900 chr6B 86.842 456 41 8 967 1411 630505031 630504584 2.080000e-135 492
3 TraesCS6B01G358900 chr6B 86.667 405 54 0 976 1380 630514592 630514188 1.270000e-122 449
4 TraesCS6B01G358900 chr6B 81.452 496 42 26 453 906 630505545 630505058 6.120000e-96 361
5 TraesCS6B01G358900 chr6B 83.648 159 21 4 2079 2235 677587685 677587530 6.710000e-31 145
6 TraesCS6B01G358900 chr6B 83.648 159 21 4 2079 2235 682639853 682640008 6.710000e-31 145
7 TraesCS6B01G358900 chr6D 91.561 2287 130 30 57 2330 418314056 418311820 0.000000e+00 3096
8 TraesCS6B01G358900 chr6D 89.524 420 40 2 970 1385 418530982 418530563 1.590000e-146 529
9 TraesCS6B01G358900 chr6D 86.639 479 59 4 976 1451 418524221 418523745 2.050000e-145 525
10 TraesCS6B01G358900 chr6A 87.864 1442 89 29 1 1434 560754559 560753196 0.000000e+00 1615
11 TraesCS6B01G358900 chr6A 88.957 489 41 10 970 1449 560816812 560816328 1.990000e-165 592
12 TraesCS6B01G358900 chr6A 88.333 420 46 1 970 1386 560829438 560829019 3.460000e-138 501
13 TraesCS6B01G358900 chr6A 80.502 518 52 25 453 929 560817345 560816836 3.680000e-93 351
14 TraesCS6B01G358900 chr2A 83.665 251 37 4 2079 2328 726767948 726767701 1.390000e-57 233
15 TraesCS6B01G358900 chr7B 81.176 255 40 5 2079 2330 118127603 118127354 5.080000e-47 198
16 TraesCS6B01G358900 chr2B 83.544 158 23 2 2079 2235 780373195 780373350 6.710000e-31 145
17 TraesCS6B01G358900 chr1B 83.133 166 21 6 2073 2235 670194360 670194521 6.710000e-31 145
18 TraesCS6B01G358900 chrUn 83.019 159 22 4 2079 2235 30844188 30844033 3.120000e-29 139
19 TraesCS6B01G358900 chr3A 82.911 158 24 3 2079 2235 27881892 27882047 3.120000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G358900 chr6B 630464584 630466913 2329 True 4303.0 4303 100.0000 1 2330 1 chr6B.!!$R1 2329
1 TraesCS6B01G358900 chr6B 630504584 630505545 961 True 426.5 492 84.1470 453 1411 2 chr6B.!!$R5 958
2 TraesCS6B01G358900 chr6D 418311820 418314056 2236 True 3096.0 3096 91.5610 57 2330 1 chr6D.!!$R1 2273
3 TraesCS6B01G358900 chr6A 560753196 560754559 1363 True 1615.0 1615 87.8640 1 1434 1 chr6A.!!$R1 1433
4 TraesCS6B01G358900 chr6A 560816328 560817345 1017 True 471.5 592 84.7295 453 1449 2 chr6A.!!$R3 996

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
912 966 0.179181 CAGCAAAGCATACACGGCAG 60.179 55.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2278 2344 0.178767 TCTGGACATGATCGCCAAGG 59.821 55.0 0.0 0.0 0.0 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.034838 ACATTTGGTGTGTGCGGTGT 61.035 50.000 0.00 0.00 40.28 4.16
31 32 0.317770 CATTTGGTGTGTGCGGTGTC 60.318 55.000 0.00 0.00 0.00 3.67
32 33 1.452145 ATTTGGTGTGTGCGGTGTCC 61.452 55.000 0.00 0.00 0.00 4.02
84 85 4.301027 GGCAGCGTAGGGATCCGG 62.301 72.222 5.45 0.00 0.00 5.14
109 110 2.281484 GTCTTGGCGGCAAGTGGA 60.281 61.111 40.01 25.37 34.07 4.02
111 112 2.281761 CTTGGCGGCAAGTGGAGT 60.282 61.111 36.05 0.00 0.00 3.85
155 156 2.110213 GTGTTCGAGGTGGGTGCA 59.890 61.111 0.00 0.00 0.00 4.57
202 203 0.534873 GGCAGAGAACAGAGGAGGAC 59.465 60.000 0.00 0.00 0.00 3.85
204 205 1.827681 CAGAGAACAGAGGAGGACGA 58.172 55.000 0.00 0.00 0.00 4.20
218 219 1.469335 GGACGAGTGGAGTGTGGGAA 61.469 60.000 0.00 0.00 0.00 3.97
227 228 1.064825 GAGTGTGGGAAGGGAAAGGA 58.935 55.000 0.00 0.00 0.00 3.36
249 251 6.380274 AGGAGTTCCGATAGTTTTCTACATGA 59.620 38.462 0.00 0.00 42.08 3.07
250 252 7.039882 GGAGTTCCGATAGTTTTCTACATGAA 58.960 38.462 0.00 0.00 35.02 2.57
289 294 1.238439 CATGGCGGACAGTTCAAACT 58.762 50.000 0.00 0.00 40.60 2.66
290 295 2.224426 ACATGGCGGACAGTTCAAACTA 60.224 45.455 0.00 0.00 37.08 2.24
291 296 2.851263 TGGCGGACAGTTCAAACTAT 57.149 45.000 0.00 0.00 37.08 2.12
355 360 4.158209 GGACTATCCGGACTATTTAGAGCC 59.842 50.000 6.12 7.98 0.00 4.70
373 378 5.082425 AGAGCCCATTGGATGATATTTTCC 58.918 41.667 3.62 0.00 0.00 3.13
383 388 4.082571 GGATGATATTTTCCGAGCCCATTG 60.083 45.833 0.00 0.00 0.00 2.82
396 401 4.410099 GAGCCCATTGGATGATATTTCCA 58.590 43.478 3.62 4.63 41.50 3.53
401 406 5.387788 CCATTGGATGATATTTCCAGACCA 58.612 41.667 0.00 0.00 43.87 4.02
404 409 5.974156 TGGATGATATTTCCAGACCAGAA 57.026 39.130 4.63 0.00 38.35 3.02
421 426 3.352648 CAGAAAAATAGGGCGAAAGGGA 58.647 45.455 0.00 0.00 0.00 4.20
429 434 2.291043 GGCGAAAGGGAGGAGTCCA 61.291 63.158 12.86 0.00 46.07 4.02
445 450 6.629156 AGGAGTCCATTAGAGATGTCCTAAT 58.371 40.000 12.86 0.00 37.32 1.73
492 498 7.932335 TCTAGAGAATCGTCTACAAATCTTCC 58.068 38.462 0.00 0.00 42.67 3.46
497 503 6.555360 AGAATCGTCTACAAATCTTCCCCTAT 59.445 38.462 0.00 0.00 29.93 2.57
502 508 7.343833 TCGTCTACAAATCTTCCCCTATTTACT 59.656 37.037 0.00 0.00 0.00 2.24
647 683 0.789383 CAATCGAAACGCCGAAGCAC 60.789 55.000 0.00 0.00 42.22 4.40
649 685 1.897398 ATCGAAACGCCGAAGCACAC 61.897 55.000 0.00 0.00 42.22 3.82
677 713 1.079819 CGACGGATGCAGACCAAGT 60.080 57.895 12.20 3.89 0.00 3.16
743 779 2.100631 CGCTACCCTCCAAACTGCG 61.101 63.158 0.00 0.00 36.19 5.18
745 781 0.741221 GCTACCCTCCAAACTGCGAG 60.741 60.000 0.00 0.00 0.00 5.03
774 810 0.616371 TATCCCAACACCCACCTTCG 59.384 55.000 0.00 0.00 0.00 3.79
832 876 3.566322 CCCGTCCACAAAAACAACAGATA 59.434 43.478 0.00 0.00 0.00 1.98
897 951 1.536418 ACTCCTACCAGCACCAGCA 60.536 57.895 0.00 0.00 45.49 4.41
901 955 1.589716 CCTACCAGCACCAGCAAAGC 61.590 60.000 0.00 0.00 45.49 3.51
902 956 0.890542 CTACCAGCACCAGCAAAGCA 60.891 55.000 0.00 0.00 45.49 3.91
903 957 0.251297 TACCAGCACCAGCAAAGCAT 60.251 50.000 0.00 0.00 45.49 3.79
912 966 0.179181 CAGCAAAGCATACACGGCAG 60.179 55.000 0.00 0.00 0.00 4.85
953 1009 1.549322 TCCTCCCCTCCCCTGTAGT 60.549 63.158 0.00 0.00 0.00 2.73
991 1047 4.142381 CGGGAGATTCTTGGATTGGTTTTC 60.142 45.833 0.00 0.00 0.00 2.29
1286 1342 1.064946 GACTCATCGTCCAGGAGCG 59.935 63.158 0.00 0.00 36.62 5.03
1459 1525 6.238239 GCACGTACTACTAGTTAAGTACTCCC 60.238 46.154 23.91 13.31 43.80 4.30
1460 1526 6.019479 CACGTACTACTAGTTAAGTACTCCCG 60.019 46.154 23.91 16.97 43.80 5.14
1474 1540 5.658468 AGTACTCCCGCTGTAAAGAAATAC 58.342 41.667 0.00 0.00 0.00 1.89
1513 1579 3.068307 CCATTACTCCTTGAGACCGTAGG 59.932 52.174 0.00 0.00 43.61 3.18
1536 1602 6.948309 AGGCTTGACAGTAATAAGGACAAAAT 59.052 34.615 0.00 0.00 0.00 1.82
1539 1605 8.462016 GCTTGACAGTAATAAGGACAAAATCAT 58.538 33.333 0.00 0.00 0.00 2.45
1579 1645 5.486419 AGGGATCCTTTGATTCAAAGCAATT 59.514 36.000 26.74 14.23 46.44 2.32
1617 1683 6.157471 TGGAGGACTTAAATACTTAGGAACCC 59.843 42.308 0.00 0.00 0.00 4.11
1625 1691 8.999905 TTAAATACTTAGGAACCCTTTTGTGT 57.000 30.769 0.00 0.00 34.61 3.72
1673 1739 7.334421 TGAAATCCTTCAGAATTTCCGTAAGAG 59.666 37.037 5.60 0.00 36.62 2.85
1732 1798 6.434028 CCATCCACTCAAACCTCTTCATAAAA 59.566 38.462 0.00 0.00 0.00 1.52
1735 1801 6.710744 TCCACTCAAACCTCTTCATAAAACTC 59.289 38.462 0.00 0.00 0.00 3.01
1774 1840 3.719268 ATCAGGCATACCAAACACTCA 57.281 42.857 0.00 0.00 39.06 3.41
1806 1872 8.245491 CCTACTTCTTGTAGTTCTTCTAACTCC 58.755 40.741 0.00 0.00 45.36 3.85
1835 1901 2.762887 TCAAGAGGGCATGACACTCTAG 59.237 50.000 18.35 4.70 40.49 2.43
1873 1939 9.587772 TTTCTATTCAGGAGTTCTTAAGAATCG 57.412 33.333 20.41 8.20 36.33 3.34
1901 1967 8.622157 GTGAATTAAAGAGGCCCTTAACTATTC 58.378 37.037 0.00 10.06 34.00 1.75
1902 1968 8.333235 TGAATTAAAGAGGCCCTTAACTATTCA 58.667 33.333 0.00 12.08 34.00 2.57
1903 1969 9.355916 GAATTAAAGAGGCCCTTAACTATTCAT 57.644 33.333 0.00 0.00 34.00 2.57
1904 1970 8.926092 ATTAAAGAGGCCCTTAACTATTCATC 57.074 34.615 0.00 0.00 34.00 2.92
1905 1971 5.975988 AAGAGGCCCTTAACTATTCATCA 57.024 39.130 0.00 0.00 32.24 3.07
1906 1972 5.559148 AGAGGCCCTTAACTATTCATCAG 57.441 43.478 0.00 0.00 0.00 2.90
1907 1973 5.219739 AGAGGCCCTTAACTATTCATCAGA 58.780 41.667 0.00 0.00 0.00 3.27
1908 1974 5.306678 AGAGGCCCTTAACTATTCATCAGAG 59.693 44.000 0.00 0.00 0.00 3.35
1909 1975 4.971924 AGGCCCTTAACTATTCATCAGAGT 59.028 41.667 0.00 0.00 0.00 3.24
1910 1976 5.430089 AGGCCCTTAACTATTCATCAGAGTT 59.570 40.000 0.00 0.00 37.24 3.01
1911 1977 6.069381 AGGCCCTTAACTATTCATCAGAGTTT 60.069 38.462 0.00 0.00 35.17 2.66
1912 1978 7.127339 AGGCCCTTAACTATTCATCAGAGTTTA 59.873 37.037 0.00 0.00 35.17 2.01
2046 2112 7.816995 TGCATTTATAGTTTGGAAAATGTGGAC 59.183 33.333 8.05 0.00 40.05 4.02
2064 2130 3.057734 GGACGATTATTGACCCACGATC 58.942 50.000 0.00 0.00 0.00 3.69
2087 2153 9.741647 GATCCATTTTCTATTGAAGTGAATTCC 57.258 33.333 2.27 0.00 37.08 3.01
2110 2176 8.015185 TCCACTTTTTACTCTGTAGTTGTACT 57.985 34.615 0.00 0.00 37.15 2.73
2181 2247 6.764085 TCAGATTTTGGAGACTTTAAACACGA 59.236 34.615 0.00 0.00 0.00 4.35
2206 2272 3.726291 ACCGTAGTTTTGCATTTTGCT 57.274 38.095 0.75 0.00 45.31 3.91
2217 2283 7.697291 AGTTTTGCATTTTGCTTGTTTATGTTG 59.303 29.630 0.75 0.00 45.31 3.33
2228 2294 4.145365 TGTTTATGTTGGATAGGACCGG 57.855 45.455 0.00 0.00 0.00 5.28
2235 2301 0.180171 TGGATAGGACCGGCATGTTG 59.820 55.000 0.00 0.00 0.00 3.33
2236 2302 0.468226 GGATAGGACCGGCATGTTGA 59.532 55.000 0.00 0.00 0.00 3.18
2249 2315 3.127548 GGCATGTTGAGTCAATGATTCGT 59.872 43.478 9.18 0.00 0.00 3.85
2254 2320 7.485913 GCATGTTGAGTCAATGATTCGTAAAAT 59.514 33.333 9.18 0.00 0.00 1.82
2255 2321 9.986833 CATGTTGAGTCAATGATTCGTAAAATA 57.013 29.630 9.18 0.00 0.00 1.40
2277 2343 5.468540 AAAAATGTAAAGAACAGAGGGCC 57.531 39.130 0.00 0.00 42.70 5.80
2278 2344 2.808906 ATGTAAAGAACAGAGGGCCC 57.191 50.000 16.46 16.46 42.70 5.80
2295 2362 1.224315 CCCTTGGCGATCATGTCCA 59.776 57.895 0.00 0.00 0.00 4.02
2302 2369 1.576356 GCGATCATGTCCAGACTTCC 58.424 55.000 0.00 0.00 0.00 3.46
2307 2374 2.338809 TCATGTCCAGACTTCCCTTGT 58.661 47.619 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.115911 GGACACCGCACACACCAAA 61.116 57.895 0.00 0.00 0.00 3.28
30 31 4.893524 ACTACAGATAATGTCCATGTCGGA 59.106 41.667 0.00 0.00 42.70 4.55
31 32 4.984785 CACTACAGATAATGTCCATGTCGG 59.015 45.833 0.00 0.00 42.70 4.79
32 33 4.984785 CCACTACAGATAATGTCCATGTCG 59.015 45.833 0.00 0.00 42.70 4.35
33 34 5.300752 CCCACTACAGATAATGTCCATGTC 58.699 45.833 0.00 0.00 42.70 3.06
34 35 4.103153 CCCCACTACAGATAATGTCCATGT 59.897 45.833 0.00 0.00 42.70 3.21
35 36 4.347876 TCCCCACTACAGATAATGTCCATG 59.652 45.833 0.00 0.00 42.70 3.66
36 37 4.566837 TCCCCACTACAGATAATGTCCAT 58.433 43.478 0.00 0.00 42.70 3.41
37 38 3.967326 CTCCCCACTACAGATAATGTCCA 59.033 47.826 0.00 0.00 42.70 4.02
38 39 3.325135 CCTCCCCACTACAGATAATGTCC 59.675 52.174 0.00 0.00 42.70 4.02
39 40 3.325135 CCCTCCCCACTACAGATAATGTC 59.675 52.174 0.00 0.00 42.70 3.06
49 50 1.272554 CCCAGAACCCTCCCCACTAC 61.273 65.000 0.00 0.00 0.00 2.73
84 85 2.480555 CCGCCAAGACACAATCGC 59.519 61.111 0.00 0.00 0.00 4.58
109 110 1.412710 TCTTGCCTGACTTTCGTCACT 59.587 47.619 0.00 0.00 44.85 3.41
155 156 2.363147 GACCCTGACTCCTCCGCT 60.363 66.667 0.00 0.00 0.00 5.52
191 192 0.322997 CTCCACTCGTCCTCCTCTGT 60.323 60.000 0.00 0.00 0.00 3.41
202 203 1.293498 CCTTCCCACACTCCACTCG 59.707 63.158 0.00 0.00 0.00 4.18
204 205 0.401395 TTCCCTTCCCACACTCCACT 60.401 55.000 0.00 0.00 0.00 4.00
249 251 3.527434 GGATCGAACAGTCCGGTTT 57.473 52.632 0.00 0.00 0.00 3.27
336 341 4.122337 TGGGCTCTAAATAGTCCGGATA 57.878 45.455 7.81 1.29 44.71 2.59
337 342 2.972348 TGGGCTCTAAATAGTCCGGAT 58.028 47.619 7.81 0.00 44.71 4.18
348 353 6.721208 GGAAAATATCATCCAATGGGCTCTAA 59.279 38.462 0.00 0.00 35.71 2.10
349 354 6.248433 GGAAAATATCATCCAATGGGCTCTA 58.752 40.000 0.00 0.00 35.71 2.43
355 360 4.082571 GGCTCGGAAAATATCATCCAATGG 60.083 45.833 0.00 0.00 35.34 3.16
373 378 3.441572 GGAAATATCATCCAATGGGCTCG 59.558 47.826 0.00 0.00 36.92 5.03
383 388 7.645058 TTTTTCTGGTCTGGAAATATCATCC 57.355 36.000 1.40 1.40 37.48 3.51
396 401 3.713826 TTCGCCCTATTTTTCTGGTCT 57.286 42.857 0.00 0.00 0.00 3.85
401 406 3.621558 CTCCCTTTCGCCCTATTTTTCT 58.378 45.455 0.00 0.00 0.00 2.52
404 409 1.920351 TCCTCCCTTTCGCCCTATTTT 59.080 47.619 0.00 0.00 0.00 1.82
421 426 4.551215 AGGACATCTCTAATGGACTCCT 57.449 45.455 0.00 0.00 0.00 3.69
502 508 6.939730 TGCAACTGTTTTACTATCTGGATCAA 59.060 34.615 0.00 0.00 0.00 2.57
647 683 0.456221 ATCCGTCGGCTACTCTTGTG 59.544 55.000 6.34 0.00 0.00 3.33
649 685 0.872021 GCATCCGTCGGCTACTCTTG 60.872 60.000 6.34 0.00 0.00 3.02
677 713 2.614481 CCTCGTTACCTTTGCTTGCCTA 60.614 50.000 0.00 0.00 0.00 3.93
743 779 2.007608 GTTGGGATAGTGTTTCGCCTC 58.992 52.381 0.00 0.00 0.00 4.70
745 781 1.467342 GTGTTGGGATAGTGTTTCGCC 59.533 52.381 0.00 0.00 0.00 5.54
832 876 3.637273 GGACGGGAGGTTGTGGCT 61.637 66.667 0.00 0.00 0.00 4.75
897 951 1.812571 CTTTCCTGCCGTGTATGCTTT 59.187 47.619 0.00 0.00 0.00 3.51
901 955 2.098293 GGCTTTCCTGCCGTGTATG 58.902 57.895 0.00 0.00 43.74 2.39
902 956 4.637771 GGCTTTCCTGCCGTGTAT 57.362 55.556 0.00 0.00 43.74 2.29
912 966 2.744741 GAGCTGTACTTCTTGGCTTTCC 59.255 50.000 0.00 0.00 33.13 3.13
991 1047 1.154035 GCGAAACCATCTTTGCCGG 60.154 57.895 0.00 0.00 30.56 6.13
1056 1112 2.867472 GTCGTCCGGTTTGCCATG 59.133 61.111 0.00 0.00 34.09 3.66
1459 1525 6.390987 AAAGTCTCGTATTTCTTTACAGCG 57.609 37.500 0.00 0.00 0.00 5.18
1486 1552 4.401519 CGGTCTCAAGGAGTAATGGTCTAA 59.598 45.833 0.00 0.00 0.00 2.10
1487 1553 3.952323 CGGTCTCAAGGAGTAATGGTCTA 59.048 47.826 0.00 0.00 0.00 2.59
1489 1555 2.496470 ACGGTCTCAAGGAGTAATGGTC 59.504 50.000 0.00 0.00 0.00 4.02
1490 1556 2.537143 ACGGTCTCAAGGAGTAATGGT 58.463 47.619 0.00 0.00 0.00 3.55
1491 1557 3.068307 CCTACGGTCTCAAGGAGTAATGG 59.932 52.174 0.00 0.00 31.64 3.16
1492 1558 3.491104 GCCTACGGTCTCAAGGAGTAATG 60.491 52.174 0.00 0.00 31.64 1.90
1513 1579 7.816640 TGATTTTGTCCTTATTACTGTCAAGC 58.183 34.615 0.00 0.00 0.00 4.01
1536 1602 3.256383 CCCTGAAACTGTTTGATGCATGA 59.744 43.478 11.03 0.00 0.00 3.07
1539 1605 2.942804 TCCCTGAAACTGTTTGATGCA 58.057 42.857 11.03 1.52 0.00 3.96
1596 1662 8.737175 CAAAAGGGTTCCTAAGTATTTAAGTCC 58.263 37.037 0.00 0.00 31.13 3.85
1599 1665 9.074576 ACACAAAAGGGTTCCTAAGTATTTAAG 57.925 33.333 0.00 0.00 31.13 1.85
1702 1768 5.559148 AGAGGTTTGAGTGGATGGATATC 57.441 43.478 0.00 0.00 0.00 1.63
1706 1772 2.978978 TGAAGAGGTTTGAGTGGATGGA 59.021 45.455 0.00 0.00 0.00 3.41
1732 1798 3.973425 AGCATAGGAAAAGCAATGGAGT 58.027 40.909 0.00 0.00 0.00 3.85
1735 1801 5.048224 CCTGATAGCATAGGAAAAGCAATGG 60.048 44.000 0.00 0.00 36.11 3.16
1764 1830 6.176183 AGAAGTAGGATGAATGAGTGTTTGG 58.824 40.000 0.00 0.00 0.00 3.28
1806 1872 2.103094 TCATGCCCTCTTGAATCCTACG 59.897 50.000 0.00 0.00 0.00 3.51
1857 1923 6.969828 ATTCACACGATTCTTAAGAACTCC 57.030 37.500 19.94 11.11 36.80 3.85
1873 1939 5.710567 AGTTAAGGGCCTCTTTAATTCACAC 59.289 40.000 6.46 0.00 36.93 3.82
2046 2112 3.106242 TGGATCGTGGGTCAATAATCG 57.894 47.619 0.00 0.00 0.00 3.34
2064 2130 8.693542 GTGGAATTCACTTCAATAGAAAATGG 57.306 34.615 7.93 0.00 42.86 3.16
2097 2163 8.951787 ATGTGTTACAAAAGTACAACTACAGA 57.048 30.769 0.00 0.00 0.00 3.41
2165 2231 5.107722 CGGTAAACTCGTGTTTAAAGTCTCC 60.108 44.000 20.78 15.84 46.32 3.71
2181 2247 5.460748 GCAAAATGCAAAACTACGGTAAACT 59.539 36.000 0.00 0.00 44.26 2.66
2206 2272 4.519213 CCGGTCCTATCCAACATAAACAA 58.481 43.478 0.00 0.00 0.00 2.83
2217 2283 0.468226 TCAACATGCCGGTCCTATCC 59.532 55.000 1.90 0.00 0.00 2.59
2228 2294 4.346734 ACGAATCATTGACTCAACATGC 57.653 40.909 0.00 0.00 0.00 4.06
2254 2320 5.479027 GGGCCCTCTGTTCTTTACATTTTTA 59.521 40.000 17.04 0.00 35.85 1.52
2255 2321 4.283467 GGGCCCTCTGTTCTTTACATTTTT 59.717 41.667 17.04 0.00 35.85 1.94
2256 2322 3.832490 GGGCCCTCTGTTCTTTACATTTT 59.168 43.478 17.04 0.00 35.85 1.82
2257 2323 3.431415 GGGCCCTCTGTTCTTTACATTT 58.569 45.455 17.04 0.00 35.85 2.32
2258 2324 2.291605 GGGGCCCTCTGTTCTTTACATT 60.292 50.000 24.38 0.00 35.85 2.71
2259 2325 1.285078 GGGGCCCTCTGTTCTTTACAT 59.715 52.381 24.38 0.00 35.85 2.29
2277 2343 0.816825 CTGGACATGATCGCCAAGGG 60.817 60.000 0.00 0.00 0.00 3.95
2278 2344 0.178767 TCTGGACATGATCGCCAAGG 59.821 55.000 0.00 0.00 0.00 3.61
2302 2369 4.521146 AGGAATGCAACAGATAGACAAGG 58.479 43.478 0.00 0.00 0.00 3.61
2307 2374 4.183865 CAACGAGGAATGCAACAGATAGA 58.816 43.478 0.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.