>input_sequence_83682
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---------------ATGGTTTCGCCCGTCGTGATCGCGTCGGCGGGACTCGGGATGCTGGCGGGCGTGGCCATGGCAAA
CCGGACGACGGGCGACGGGCTGCCGGCGTCATCCAGATGGGACGCGCGGCCCCGTTGCTCGACTTGCAGCGGCACCGGCC
AGGAGGAGTGCCTCTGCAGCCGTTGGTCCGACGGCGACGTCGGCTGCGGGACGTGCTCTGGCTCCGGCCGCAAGCGGTGC
CGCAGCTGCGGAGGCTCTGGCACCGGCCGGCCGCTCCCGGCGCGACTCATCGTCCAGGAGCGGAAGCTGCCGACCGCGCC
AGCGCGACGCGGAGACTACAACTGA-------------------------------------------------------
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>chr6B_1_TraesCS6B01G358900
CATTTCACCGAACATTTGGTGTGTGCGGTGTCCGACATGGACATTATCTGTAGTGGGGAGGGTTCTGGGCAGCGTAGGGA
TCCGGCGATTGTGTCTTGGCGGCAAGTGGAGTGACGAAAGTCAGGCAAGACCTGGGCGGTGTTCGAGGTGGGTGCAGCGG
AGGAGTCAGGGTCCTCTAGTGGAGGCAGAGAACAGAGGAGGACGAGTGGAGTGTGGGAAGGGAAAGGAGTTCCGAT-AGT
TTTCTACATGAAACCGGACTGTTCGATCCGACATGGCGGACAGTTCAA---ACTATCCTATTTTTTCCCTCAATTTGAGG
CGGGACTGGGAATACCGGACTATCCGGACTATTTAGAGCCCATTGGATGATATTTTCCGAGCCCATTGGATGATATTTCC
AGACCAGAAAAATAGGGCGAAAGGGAGGAGTCCATTAGAGATGTCCTAATTAAATGAAATCTTGCAAGTAATCTAGAGAA
TCGTCTACAAATC-TTCCCCTATTTACTTGATCCAG--ATAGTAAAACAGT----------TGCAGAGGACAAATCCTGT
GCGTAGCTTCGAATTCGTCTCGTAGCATGGAAGAGGAAAAGGGAACCGGCAAGCC------------------GCCAAGC
AGCTTGCAGCGCACACGAAACCGCAATCGAAACGCCGAAGCACACAAGAGTAGCCGACGGATGCAGACCAAGTAGGCAAG
CAAAGGTAACGAGGCGGGCACGCCTTCCCTTCCCCGCCTCCGCTACCCTCCAAACTGCGAGGCGAAACACTATCCCAACA
CCCACCTTCG--------TACAACCCCTGAAAAAATCCTACAAATCGACGCACCCCGTCCACAAAAACAACAGATAGCCA
CAACCTCCCGTC--C-------ACACACCCATCGAAATCTCTTCTTCTTCCA-CTCCTACCAGCACCAGCAAAGCATACA
CGGCAGGAAAGCCAAGAAGT--ACAGCTCCTCCTCCCCTCCCCTGTAGTTGCTTCGCCGTTTCCGGGAGATTCTTGGATT
GGTTTTCCGGCAAAGATGGTTTCGCCCGTCGTGATCGCGTCGGCGGGACTCGGGATGCTGGCGGGCGTGGCCATGGCAAA
CCGGACGACGGGCGACGGGCTGCCGGCGTCATCCAGATGGGACGCGCGGCCCCGTTGCTCGACTTGCAGCGGCACCGGCC
AGGAGGAGTGCCTCTGCAGCCGTTGGTCCGACGGCGACGTCGGCTGCGGGACGTGCTCTGGCTCCGGCCGCAAGCGGTGC
CGCAGCTGCGGAGGCTCTGGCACCGGCCGGCCGCTCCCGGCGCGACTCATCGTCCAGGAGCGGAAGCTGCCGACCGCGCC
AGCGCGACGCGGAGACTACAACTGATATTCATC----GGTTTCCCCGAGGAAATCGTAAGTGTAATTAAGCACAACATA-
-----GCACACCAGTATATGCAACGTGTCCATTCCTGTGTATGTTATACGCTGCATCCTGCACGTACTACTAGTTAAGTA
CTCCCGCTGTAAAGAAATACGAGACTTTTTTTTAGACCATTACTCCTTGAGACCGTAGGCTTGACAGTAATAAGGACAAA
ATCATGCATCAAACAGTTTCAGGGATCCTTTGATTCAAAGCAATTTTGCAGATTTTTTGGAGGACTTAAATACTTAGGAA
CCCTTTTGTGTTATTAGTTTGATTCACATGATTGAAATCCTTCAGAATTTCCGTAAGAGTCATTTGTATTCTATATTTGA
GAGGAAAGATATCCATCCACTCAAACCTCTTCATAAAACTCCATTGCTTTTCCTATGCTATCAGGCATACCAAACACTCA
TTCATCCTACTTCTTGTAGTTCTTCTAACTCCGTAGGATTCAAGAGGGCATGACACTCTAGTCTTACATTTTTTTCTATT
CAGGAGTTCTTAAGAATCGTGTGAATTAAAGAGGCCCTTAACTATTCATCAGAGTTTATTTATGAGAAGTAGTCAAGAGA
TTAAAGAACATTATGATATTAAATACATGTTATATATTTTAAAACTTTCATTTTAAGCCAAATCATGTACACGCCACGTG
CAACTTGCATTTATAGTTTGGAAAATGTGGACGATTATTGACCCACGATCCATTTTCTATTGAAGTGAATTCCACTTTTT
ACTCTGTAGTTGTACTTTTGTAACACATATTACTCCATTTAGTGGAACTTCAATCAAAATATCAGATTTTGGAGACTTTA
AACACGAGTTTACCGTAGTTTTGCATTTTGCTTGTTTATGTTGGATAGGACCGGCATGTTGAGTCAATGATTCGTAAAAT
AAAAATGTAAAGAACAGAGGGCCCC-TTGGCGATCATGTCCAGACTTCCCTTGTCTATCTGTTGCATTCCTCGTTG
>chr6A_1
CATTTCACCGAACACTTGGTGTGTGCGGTG----------ACATTATCTATAGTGGGAGGGTTTCAGGGCGGCGTACGGA
TTCGACGATTGTGTCTTGGCGGCAAGGT-GGAGAGGGAAGTCTGGCAAGACCTGGGCGGTGTTCGAGGTGGGCGCGGCGG
AGGAGTCAGGGTCCTCTAGTGGAAACGAAGAGCAGATGAAGAGGGGTGTAGTGCGGG-CGGGAAAGGGGTTCCTATAAGT
TTTCTACATGGGACCGAGCTGTTCGATCCAACATGGCGAACAGTTCAA---AC---CCTATTTCTTCCTTTAATTTGAGG
CGGGACTGGGGACACCGGACAGTCTGGACTATCCAGAGC--------------------AGCTCATTAGGGGATATTTTC
GGACCGGCCAAATAGGGCGAAAGGGGCGAGTCCGTTAGAGATGTCCTAAGTAAATGAAATCTTGCAAGTAATCTAGAGAA
TCGTCTACAAATC-TTCTCCTACTTACATGATCCAGATATAGTAAAACAGT----------TGCAGAGGGCAAATCCTGT
GCGTAGCTTCGAATTCGTCTCGTAGCATGGAAGAGGAAAAGGGAACCGGCAAGCC------------------GCCAAGC
AGCTTGCAGCGCACACGAAACCGCAATCGAAACGCCGAAGCATAGAAGAGTAGCCGACGGATGCAGACCAAGCAGGCAAG
CAAAGGCAACGAGGCGGGCACGCCTTCCCTTCCCCGCCTCCACTACCCTCCAAACTGCCAAGCGAAACTAT---------
-----------------------CCCCCGAAAAAATCCTACAAATCGACGCACCCCGTCCACAGAAACAACAGATTGCCA
CAACCCCCCGTCCAC-------ACACACCCATCGAAACCTCTTCTTCTTCCAACTCCTACCAGCACCAGC----------
-------AAAGCCAAGAAGT--ACAGCTCCTCCTCCCCTCCCCTGTAGCTGCTTCGCCGTTTCCGGGAGGTTCTTGGATT
GGTTTTTCGGCAGAGATGGTTTCGCCCGTCGTGATCGCGTCGGCGGGGCTCGGGATGCTGGCGGGCGTGGCGTTGGCGAG
CCGGGGGACGGGCGACGGGCTGCCGGCGTCGTCCAGATGGGACGCGCGGCCCCGTTGCTCCACGTGCAGCGGCACCGGCC
GGGAGGAGTGCCTCTGCAGCCGCTGGTCCGACGGCGACGTCGGCTGCGGGACGTGCTCTGGGTCCGGCCGCAAGCGGTGC
CGCAGCTGCGGAGGCTCTGGCACCGGCCGGCCGCTCCCGGCGCGACTCATCGTCCAGGAGCAGAAGCTGCCGACCGCGCC
AGGGCGACGCGGAGACTACAACTGATATTCATC----GGTTTCCCCGAGGAAATCGTAAGTGTAATTAAGCACAACATA-
-----GCACACCAGTATATGCAACGTGTCCATTCCTGTGTATGTTATACGCTGTCTCCT---------------------
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>chr6D_57
--------------------------------------------------------GGAGGGTTCTGGGCAGCGTAGGGA
TCCGACGATTGA-------CGGCAAGTGGGGCGACGAAAGTCGGGCAAGCCCTGGGCGGTGTTCGAGGTAGGTGCGGCGG
AGGAGTCGGGGTTCTCTAGTGGAGGTAGAGAGCAGAGGAGGAGTGGTGGAGTGTGGGACGGGAAAGGGGTTCCGATAAGT
TTTCTACATGGGACCGGACTGTTCGATCCGACATGGAGGACAGTTCAAACTAC---CCTATTTCTTCCCTCAATTTGAGG
CGGGACTGGGAATACCGGACAGTCCGGACTATCCAGAGCTCATTGGATGATATTTTCAGAGCCCATTAGATGATATTTCC
GGACCGAACAAATAGGACGAAAGGG-GGAGTCCGTTAGAGATGTCCTAAGTAAATGAAATCTTGCAATTAATTTAGAGAA
TCGTCTACAAATC-TTCGCCTACTTACATGATCCAG--ATAGTAAAACAGT----------TGCAGAGGAAAAATCCTGT
GCGTAGCTTCGAATTCGTTTCGTAGCATGGAAGAGGAAAAGGGAACCGGCAAGCC------------------GCCAAGC
AGCTTGCAGCGCACACGAAACCGCAATCGAAACGCCTAAGCATAGAAGAGTAGCCGACGGATGCAGACCAAGCAGGCAAG
CAAAGGTAACGAGGCGGGCACGCCTTCCCTTCCCCGCCTCCGCTACCCTCCAAACTGCCAAGCGAA--ACTATCCCAACA
CCCACCTTCCTACAAGGCTACAACCCGTGAAAAAATCCTACAAATCGACGCACCCCGTCCGCAAAAACAACAGATTGGCA
CAACCTCTCGTC--C-------ACACACCCATCCAAATCTCTTCTTCTTCCA-CTCCTAACAGCACCAGC----------
-------AAAGCCAAGAAGT--ACAGCTCCTCCTTCCACTCCTA-------CTTCGCCGTTTCCGGGAGATTCTTGGATT
GGTTTTTCGGCAAAGATGGTTTCGCCCGTCGTGATCGCGTCGGCGGGGCTCGGGATGCTGGCGGGCGTGGCGATGGCGAG
CCGGGGATCGGGCGACGGGCTGCCGGCGGCGTCCAGGTGGGACGCGCGGCCCCGTTGCTCCACGTGCAGCGGCACCGGCC
GGGAGGAGTGCCTCTGCAGCCGTTGGTCCGACGGCGACGTCGGCTGCGGGACGTGCTCTGGGTCCGGCCGCAAGCGCTGC
CGCAGCTGCGGAGGCTCTGGCACCGGCCGGCCGCTCCCGGCCCGACTCATCGTCCAGGAGCAGAAGCTACCGACCGCGCC
AGGGCGACGCGGAGACTACAACTGATATTCATC----GGTTTCCCCGAGGAAATCGTAAGTGTAATTAAGCAGAACATA-
-----GCACACCAGTATATGCAACGTGTCCATTCCTGTGTATGTTATACGCTGTATCCTGCACGTACTACTAGTTAAGTA
CTCCT-CTGTAAAGAAATATGAGACTTTTTTAGATG--ATTACTCCTTGAGACCGTAGACTTGACAGTAATAAGGACAAA
AGCAAGCATCAAACAGTTTCAGGGATCCTTTGATTCAAAGCAATCTTGCAGAATTTTTGGACGATTTAAATACTTAGGAA
CCTTTTTGTGCTATTAGTTTGATTCACATGATTGAAATCCTTCAGAATTTCCGTAAGATTCATTTGTATTCTATATTTGA
GAGGAAA-ATACCCATCCACTCAAACCTCTTCATAAAGCTTCATTGCTTTTCCTATGCTATCAGGCATATCAAACACTCC
TTCATCCTACTTCTTGTAGTTCTTCTAACTCTGTAGGATTCAAGAGGGCATGACACTCTAATCTTACATTTTTTTCTATT
CATGATTTCTTAAGAATCATGTGAATTAAAGAGGCCCTTAACTATTTTAT--------TTTATGAGAAGTAGTCAAGGGA
TTAAAGAACATTATGATACTAAATACATGTTACATGTTTTAAAACTTTCATTTTAAGCCAAATCATGTACACGCCACGTG
CAACTTGCATTTATAGTTTGGAAAATGTGGATGATTATTGACCCACGATGCATTTTCTATTGAAGTGAATTCTACTTTTT
ACCCTCTAGTTGTACATTTGTGACACATATTACCCCATTTAGTGGAACTTCCATCGAAATATCAGATTTTAGAGACTTTA
AACACGGGTTTACCGTAGTTTTGCATTTTGCGTGTTTATGTTAGATAGGACCGACATGTTACGTCAATGATTCGCAAAAA
GTTG-TGTAAAGAACGGAGGGCATCATTGGCGATCATGTCCGGACTTCTCTTGCCTATCTGTTGCATTCCTCGTTG
>chr6B_453
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--------------------------------------------------------AAATCTTGCAAGTAATGTAGAGAA
TCGTCTCCAAGTC-TTCGGCCAGTTACATGATCCAG--ATCGTTAACGGAGCTCATAAGAATGCAGAGGACAAATCCTGT
GCCTAGTTCCGAATTCGTCTCGTAGCGTGGAAAAGGCAAAGGAACTTGCAAGGGGAGAGTAAACACACGTGCAGCGAAGC
AGCTCGCAGCACACACGAAACAGAAATTGAAAGGCCCAAGCATAGCGGAGTAGCCGACGGATGCAGACCAAGCAGGCAAG
CAAAGGTAACGAGGCGGGCACGCCTTCCCTTCCTCGCCTCCGCTACCCTCCAAACAGCTGAA-GAA--ACTATCCCAACA
CCCACCTTCCTAGTTC-CTACAACCCCCGAAAAAATCCTATAAATCGACGCACCCCGTCCACAAAAACAACAGACTGCGA
CAACCTCCTCGCCAC-------ACACACCCATCCAAATCTCTTCTTCCACTCCT---TACCAGCAACAGGCAAGTGCATA
CGGTAAGGAAGCAACAGGTACAACAGCTCC-----------------------------------GGAGATTCTTGGATT
GGTTCTTCTGTGAAGATGGTGGCGCCCATGGTGATCGCGTCGGCGGGGCTCCGGATGCTGGCGGGCGTTGCGATGGCGAA
CCGGGGA------GACGGGCTGCCGGCGGCGTCCAGGTGGGACGCGCGGCCCCGTTGCTCCACGTGCAGCGGCACCGGCC
GGGAGGAGTGCCTCTGCAGCCGTTGGTCCGACGGCGACGTCGGCTGCGGGACGTGCTCTGGGTCTGGCCGCAAGCGGTGC
CGCAGCTGCGGAGGCTCTGGCACCGGTCGGCCGCTCCCGGCGCGACTCATCGTCCAGGAGCAGAAGCTGCCAACCCCGCC
CGGGCGACGCGGAGACTACAACTGATATTCGTCGGCAGGTTTCCCAGAGGAAATCAGTTGTGCAATTAGGCAGAACTGAA
CTAACGCACGAGTGTATATGCAACATGTTCACTCCT--------------------------------------------
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>chr6A_453
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--------------------------------------------------------AAATGTTGCAAGCAATCTAGAGAA
TCATCTACAAGTCTTTCGGCCAGTTACATGATCCAG--ATCGTTAACGGAGCTCATAAGAATGCAGAGGACAAATCCAGT
GCCTAGCTCCGAATTCGTCTCGTAGCGTGGAAAAGGCAAAGGAACTCGCAAGGGCAGAGTAAACACACGTGCAGCGAAGC
AGCTCGCAGCACACACGAAACAGAGATCGAAAGGCCCAAGCATAGCAGAGTAGCCGACGGATGCAGACCAAGCAAGCAAG
CAAAGGTAACGAGGCGGGCACGCCTTCCCTTCCTCGCCTCCGCTACCCTCCAAACTGCTAAACGAA--ACTATCCCAACA
CCCACCTTCCTACAA--------CCCGCGAAAAAATCCTATAAACCGACGCACCCCGTCCACAAAATCAACAGATTGCCA
CACCCCCCCTGGCCACACACTGACACACCCATCCAAATCTCTTCTTCCACTCCT---TACCAGCACCAGGCAAGTGCACA
CGGCAAGGAAGCAACAAGCACCGGCAATTTGGGCACCAAGAAAA--------------------GGGAGATTCTTGGATT
GTTTTTTCGGCGAAGATGGTTTCGCCCATGGTGATCGCGTCGGCGGGGCTCGGGATGCTGGCGGGCGTGGCGATGGCGAA
CCGGACGACGGGCGACGGGCTGCCGGCGGCGTCCAGGTGGAACGCGCGGCCCCGTTGCTCCACGTGCAGCGGCACCGGCC
GGGAGGAGTGCCTCTGCAGCCGTTGGTCCGACGGCGACGTCGGCTGCGGGACGTGCTCCGGCTCCGGTCGCAAGCGGTGC
CGCAGCTGTGGAGGCTCTGGCACCGGCCGGCCGCTCCCGGCGCGACTCGTCGTCCAGGAGCAGAAGCTGCCGACCCCGCC
CGGGCGACGCGGAGACTACAACTAATATTCGTC----GGTTTCCCAGAGGAAATCAGTTGTGCAATTAGGCGGAGCTGAA
CTAACGCACGAGTGTATATGCAACATGTTCACTCTTGTGGATGTGATACG-TGCCTCCTTCAAGACGTACTAGT------
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>SNPs
--------------S---------------SSSSSSSSSS---------S------------------------------
----S------------------------S-S----------S--------------------------------S----
-------------------------------S----------S-S-------------S--------S------------
----------SS-----------------------------------------SSS-------S----------------
--------------------SS----------SS-----S-----------------S---------S------------
S----S--S----------------S-------S---------------S------------------------------
-----------------S----S----S----------------------------------------------------
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------------------------------------------S-S---------------------------S-------
----------------------------------------------------------S-S-------------------
---------S-----------------------------------------------------------------S----
----------------------------------------------------------------------S---SSS---
-----S------------------------------------------S-------------------------------
------S----------------------------------------S-----------------------S-----S--
------------------------------S-----------------------------S--S----------------
S-------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
--S-----------------------------------------------------------------------------
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----SS-------------S-----------SS-SSSS--------------------S---------------------
-S--S---------------------------------------S-------S--------S--S---------------
--S-------S-----------------------------------------------S---------------------
-------S---S-------------------------S--S----------------------------S---------S
-------------------------------S----------------------------S-------------------
--S--S------------S---------------------------SSSSSSSSSSSS-------------------S--
------------------S-------------S--S--------------------------------------------
-------------------------------S-----------------S----------------------S-------
--S--S---------S-----S-----------S-----------------S---S--------------S---------
------S------------------------S----------S----------S------SS------------S----S
SSSSS----------S------SS-----------------S------S----S----------------------
>forward_966
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------------------------------------------------------------------CAGCAAAGCATACA
CGGCAG--------------------------------------------------------------------------
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>reverse_2344
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-----------------------CCTTGGCGATCATGTCCAGA---------------------------------
