Multiple sequence alignment - TraesCS6B01G339700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G339700 chr6B 100.000 3044 0 0 1 3044 599123967 599120924 0.000000e+00 5622.0
1 TraesCS6B01G339700 chr6B 86.170 188 23 1 899 1083 599123159 599122972 1.850000e-47 200.0
2 TraesCS6B01G339700 chr6B 82.955 88 13 2 2902 2988 16390465 16390379 9.050000e-11 78.7
3 TraesCS6B01G339700 chr6A 95.997 1349 32 6 899 2235 545884643 545883305 0.000000e+00 2172.0
4 TraesCS6B01G339700 chr6A 95.567 564 15 3 436 992 545885017 545884457 0.000000e+00 894.0
5 TraesCS6B01G339700 chr6A 86.564 454 31 9 2 434 545885769 545885325 9.880000e-130 473.0
6 TraesCS6B01G339700 chr6A 82.079 279 21 14 2220 2476 545883284 545883013 8.550000e-51 211.0
7 TraesCS6B01G339700 chr6D 96.460 1243 35 2 855 2097 400090050 400088817 0.000000e+00 2043.0
8 TraesCS6B01G339700 chr6D 92.079 808 41 6 248 1055 400090596 400089812 0.000000e+00 1116.0
9 TraesCS6B01G339700 chr6D 90.968 155 10 4 2220 2374 400088692 400088542 3.980000e-49 206.0
10 TraesCS6B01G339700 chr6D 84.324 185 26 1 899 1080 400090051 400089867 8.670000e-41 178.0
11 TraesCS6B01G339700 chr3D 86.538 416 41 11 2488 2896 283311636 283311229 7.740000e-121 444.0
12 TraesCS6B01G339700 chr3D 82.456 342 39 5 11 331 599404567 599404908 2.310000e-71 279.0
13 TraesCS6B01G339700 chr3D 80.711 197 19 4 11 189 17117616 17117811 5.290000e-28 135.0
14 TraesCS6B01G339700 chr3D 81.720 93 14 3 2902 2993 144252135 144252225 1.170000e-09 75.0
15 TraesCS6B01G339700 chr7D 85.372 417 43 15 2490 2897 155265509 155265102 1.690000e-112 416.0
16 TraesCS6B01G339700 chr7D 81.717 361 42 5 11 350 91748711 91749068 2.310000e-71 279.0
17 TraesCS6B01G339700 chr7D 81.111 360 46 8 11 350 104368798 104369155 5.000000e-68 268.0
18 TraesCS6B01G339700 chr7D 81.111 360 46 10 14 352 207314431 207314073 5.000000e-68 268.0
19 TraesCS6B01G339700 chr7D 80.571 350 47 5 22 350 500257754 500257405 1.810000e-62 250.0
20 TraesCS6B01G339700 chr7D 80.645 93 16 2 2897 2988 604569206 604569115 1.510000e-08 71.3
21 TraesCS6B01G339700 chr4B 84.096 415 50 12 2489 2896 120422491 120422896 1.320000e-103 387.0
22 TraesCS6B01G339700 chr4A 83.493 418 52 11 2485 2896 563507555 563507961 1.030000e-99 374.0
23 TraesCS6B01G339700 chr4A 80.208 96 14 4 2899 2991 598620600 598620693 1.960000e-07 67.6
24 TraesCS6B01G339700 chr7A 82.619 420 52 14 2490 2897 156877828 156877418 4.830000e-93 351.0
25 TraesCS6B01G339700 chr3A 82.567 413 55 12 2490 2896 471581838 471582239 6.250000e-92 348.0
26 TraesCS6B01G339700 chr3A 90.909 44 4 0 1590 1633 730116437 730116394 3.280000e-05 60.2
27 TraesCS6B01G339700 chr5A 82.452 416 54 15 2488 2893 597428298 597428704 2.250000e-91 346.0
28 TraesCS6B01G339700 chr2A 82.227 422 56 12 2485 2896 165230660 165231072 2.250000e-91 346.0
29 TraesCS6B01G339700 chr2A 100.000 44 0 0 1841 1884 595832130 595832087 6.990000e-12 82.4
30 TraesCS6B01G339700 chr2A 100.000 44 0 0 1841 1884 595872816 595872773 6.990000e-12 82.4
31 TraesCS6B01G339700 chr3B 82.324 413 49 16 2489 2897 448844816 448844424 1.350000e-88 337.0
32 TraesCS6B01G339700 chr3B 82.303 356 42 4 15 350 417489136 417488782 3.840000e-74 289.0
33 TraesCS6B01G339700 chr3B 81.505 319 36 8 11 308 418717733 418718049 1.090000e-59 241.0
34 TraesCS6B01G339700 chr3B 80.511 313 39 9 14 306 411454613 411454303 1.420000e-53 220.0
35 TraesCS6B01G339700 chr3B 93.182 44 3 0 1590 1633 807976520 807976563 7.040000e-07 65.8
36 TraesCS6B01G339700 chr7B 81.944 360 44 9 11 350 35636398 35636756 4.970000e-73 285.0
37 TraesCS6B01G339700 chr7B 80.645 93 15 3 2902 2993 736040183 736040093 5.450000e-08 69.4
38 TraesCS6B01G339700 chrUn 82.698 341 38 9 14 334 92407113 92406774 1.790000e-72 283.0
39 TraesCS6B01G339700 chrUn 82.558 344 39 9 11 334 380756454 380756796 1.790000e-72 283.0
40 TraesCS6B01G339700 chrUn 81.337 359 44 11 14 350 97466520 97466163 1.390000e-68 270.0
41 TraesCS6B01G339700 chr4D 81.067 375 40 14 2 353 20454612 20454246 1.390000e-68 270.0
42 TraesCS6B01G339700 chr4D 80.128 312 37 12 11 302 50755642 50755948 3.080000e-50 209.0
43 TraesCS6B01G339700 chr4D 80.645 93 15 3 2902 2993 291187865 291187775 5.450000e-08 69.4
44 TraesCS6B01G339700 chr4D 80.645 93 15 3 2902 2993 291195644 291195554 5.450000e-08 69.4
45 TraesCS6B01G339700 chr4D 80.682 88 15 2 2902 2988 274620139 274620053 1.960000e-07 67.6
46 TraesCS6B01G339700 chr4D 97.143 35 1 0 2366 2400 178096354 178096320 3.280000e-05 60.2
47 TraesCS6B01G339700 chr1A 79.558 362 54 7 14 355 538801699 538801338 1.090000e-59 241.0
48 TraesCS6B01G339700 chr5D 81.538 260 27 11 11 250 235863292 235863550 8.610000e-46 195.0
49 TraesCS6B01G339700 chr2D 80.645 93 15 3 2902 2993 556954962 556954872 5.450000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G339700 chr6B 599120924 599123967 3043 True 2911.00 5622 93.08500 1 3044 2 chr6B.!!$R2 3043
1 TraesCS6B01G339700 chr6A 545883013 545885769 2756 True 937.50 2172 90.05175 2 2476 4 chr6A.!!$R1 2474
2 TraesCS6B01G339700 chr6D 400088542 400090596 2054 True 885.75 2043 90.95775 248 2374 4 chr6D.!!$R1 2126

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.033109 GGCCTGCACTTTTAGGGGAT 60.033 55.000 0.0 0.0 34.58 3.85 F
581 909 1.227089 CCATTCGCTCTCCTCCACG 60.227 63.158 0.0 0.0 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2031 2359 0.179121 GCATCGATCACACGGTGGTA 60.179 55.0 13.48 0.0 43.42 3.25 R
2172 2506 0.106149 GCCCCGATCGATAACCTTGT 59.894 55.0 18.66 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.298859 GATTCGACGGCCTGCACTTT 61.299 55.000 0.00 0.00 0.00 2.66
39 40 1.382629 GGCCTGCACTTTTAGGGGA 59.617 57.895 0.00 0.00 34.58 4.81
40 41 0.033109 GGCCTGCACTTTTAGGGGAT 60.033 55.000 0.00 0.00 34.58 3.85
41 42 1.393603 GCCTGCACTTTTAGGGGATC 58.606 55.000 0.00 0.00 34.58 3.36
42 43 1.340991 GCCTGCACTTTTAGGGGATCA 60.341 52.381 0.00 0.00 34.58 2.92
43 44 2.687914 GCCTGCACTTTTAGGGGATCAT 60.688 50.000 0.00 0.00 34.58 2.45
44 45 3.217626 CCTGCACTTTTAGGGGATCATC 58.782 50.000 0.00 0.00 0.00 2.92
45 46 3.217626 CTGCACTTTTAGGGGATCATCC 58.782 50.000 0.00 0.00 35.23 3.51
58 59 1.625818 GATCATCCCCGGCTCAAGTAT 59.374 52.381 0.00 0.00 0.00 2.12
73 74 5.750547 GCTCAAGTATGTTCATCGATCAAGA 59.249 40.000 0.00 0.00 0.00 3.02
101 118 4.385748 CCATCTTTAGGCGCTTTCAAAAAC 59.614 41.667 7.64 0.00 0.00 2.43
110 127 4.295051 GCGCTTTCAAAAACCATTACTGA 58.705 39.130 0.00 0.00 0.00 3.41
115 132 8.586273 CGCTTTCAAAAACCATTACTGATAATG 58.414 33.333 0.87 0.87 45.06 1.90
151 168 2.036475 AGAGTGACAACATCGTTGCTCT 59.964 45.455 6.77 7.90 0.00 4.09
153 170 3.987868 GAGTGACAACATCGTTGCTCTAA 59.012 43.478 6.77 0.00 0.00 2.10
164 181 6.316140 ACATCGTTGCTCTAATCTAATTGCAA 59.684 34.615 0.00 0.00 37.96 4.08
180 197 2.762745 TGCAACCTCTTTACCGAAGTC 58.237 47.619 0.00 0.00 36.70 3.01
181 198 2.074576 GCAACCTCTTTACCGAAGTCC 58.925 52.381 0.00 0.00 36.70 3.85
188 205 3.236896 TCTTTACCGAAGTCCTTGGAGT 58.763 45.455 0.00 0.00 36.70 3.85
200 217 3.866327 GTCCTTGGAGTATTTCTTCGAGC 59.134 47.826 0.00 0.00 32.90 5.03
202 219 4.162320 TCCTTGGAGTATTTCTTCGAGCAT 59.838 41.667 0.00 0.00 32.90 3.79
238 258 7.484007 CCATGAAGATGTTTTCAAGAGATTTCG 59.516 37.037 0.00 0.00 40.21 3.46
325 345 6.708949 ACCTGTAACAATTACGAGTGTGAATT 59.291 34.615 0.00 0.00 38.98 2.17
334 354 9.741168 CAATTACGAGTGTGAATTAAGTTACAG 57.259 33.333 0.30 0.00 0.00 2.74
339 359 6.864685 CGAGTGTGAATTAAGTTACAGGTGTA 59.135 38.462 0.30 0.00 0.00 2.90
342 362 8.372459 AGTGTGAATTAAGTTACAGGTGTATCA 58.628 33.333 0.30 0.00 0.00 2.15
365 386 4.946784 AGAAAATAACAGGCTAACAGCG 57.053 40.909 0.00 0.00 43.62 5.18
474 802 2.126580 ACGGACACGCTACTTCGC 60.127 61.111 0.00 0.00 46.04 4.70
581 909 1.227089 CCATTCGCTCTCCTCCACG 60.227 63.158 0.00 0.00 0.00 4.94
599 927 3.140814 GGCTCCGGCAAACATCCC 61.141 66.667 0.00 0.00 40.87 3.85
2031 2359 4.078516 GCCTACAACGACGGGCCT 62.079 66.667 0.84 0.00 38.77 5.19
2033 2361 1.140375 CCTACAACGACGGGCCTAC 59.860 63.158 0.84 0.00 0.00 3.18
2113 2441 0.955428 ACGTGCTGCATCGACCATTT 60.955 50.000 23.94 5.03 0.00 2.32
2143 2477 1.163420 TGCGCGTTGAGTTTCCACAT 61.163 50.000 8.43 0.00 0.00 3.21
2172 2506 1.069090 GGATATCTTCGGGTGCGCA 59.931 57.895 5.66 5.66 0.00 6.09
2182 2516 1.800681 GGGTGCGCACAAGGTTATC 59.199 57.895 38.60 20.12 0.00 1.75
2295 2666 8.998989 CGACATTGATGTGTTATTTGTATTCAC 58.001 33.333 0.57 0.00 41.95 3.18
2313 2684 5.852282 TTCACTTTTTCCCCTCTTCTTTG 57.148 39.130 0.00 0.00 0.00 2.77
2325 2696 7.259391 TCCCCTCTTCTTTGGATCATATATCT 58.741 38.462 0.00 0.00 0.00 1.98
2331 2702 7.667219 TCTTCTTTGGATCATATATCTTTGCCC 59.333 37.037 0.00 0.00 0.00 5.36
2346 2717 5.268387 TCTTTGCCCCTAATTAAATCAGCA 58.732 37.500 0.00 0.00 0.00 4.41
2372 2756 5.184711 TGGTTTTTCCACGTGTTTACTAGT 58.815 37.500 15.65 0.00 41.93 2.57
2373 2757 5.647225 TGGTTTTTCCACGTGTTTACTAGTT 59.353 36.000 15.65 0.00 41.93 2.24
2436 2829 4.899352 ACTATCTATCTTCATGGTGGGC 57.101 45.455 0.00 0.00 0.00 5.36
2438 2831 3.784511 ATCTATCTTCATGGTGGGCAG 57.215 47.619 0.00 0.00 0.00 4.85
2452 2845 4.127171 GGTGGGCAGTAACATATGTGTAG 58.873 47.826 9.63 1.49 37.67 2.74
2453 2846 3.560068 GTGGGCAGTAACATATGTGTAGC 59.440 47.826 9.63 11.12 37.67 3.58
2459 2852 6.347969 GGCAGTAACATATGTGTAGCATCATG 60.348 42.308 9.63 0.54 37.67 3.07
2461 2854 6.203338 CAGTAACATATGTGTAGCATCATGCA 59.797 38.462 13.38 0.00 41.38 3.96
2477 2870 7.503991 GCATCATGCAAACCATTATTTATTCG 58.496 34.615 4.20 0.00 44.26 3.34
2478 2871 7.359431 GCATCATGCAAACCATTATTTATTCGG 60.359 37.037 4.20 0.00 44.26 4.30
2479 2872 7.340122 TCATGCAAACCATTATTTATTCGGA 57.660 32.000 0.00 0.00 29.71 4.55
2480 2873 7.950512 TCATGCAAACCATTATTTATTCGGAT 58.049 30.769 0.00 0.00 29.71 4.18
2481 2874 7.866898 TCATGCAAACCATTATTTATTCGGATG 59.133 33.333 0.00 0.00 29.71 3.51
2482 2875 5.982516 TGCAAACCATTATTTATTCGGATGC 59.017 36.000 0.00 0.00 35.30 3.91
2483 2876 6.183360 TGCAAACCATTATTTATTCGGATGCT 60.183 34.615 0.00 0.00 35.56 3.79
2484 2877 6.701400 GCAAACCATTATTTATTCGGATGCTT 59.299 34.615 0.00 0.00 33.44 3.91
2485 2878 7.865385 GCAAACCATTATTTATTCGGATGCTTA 59.135 33.333 0.00 0.00 33.44 3.09
2486 2879 9.180678 CAAACCATTATTTATTCGGATGCTTAC 57.819 33.333 0.00 0.00 0.00 2.34
2487 2880 8.691661 AACCATTATTTATTCGGATGCTTACT 57.308 30.769 0.00 0.00 0.00 2.24
2488 2881 8.099364 ACCATTATTTATTCGGATGCTTACTG 57.901 34.615 0.00 0.00 0.00 2.74
2489 2882 7.174946 ACCATTATTTATTCGGATGCTTACTGG 59.825 37.037 0.00 0.00 0.00 4.00
2490 2883 7.390440 CCATTATTTATTCGGATGCTTACTGGA 59.610 37.037 0.00 0.00 0.00 3.86
2491 2884 8.783093 CATTATTTATTCGGATGCTTACTGGAA 58.217 33.333 0.00 0.00 0.00 3.53
2492 2885 6.867662 ATTTATTCGGATGCTTACTGGAAG 57.132 37.500 0.00 0.00 42.29 3.46
2504 2897 5.476752 CTTACTGGAAGCAGATTTGTAGC 57.523 43.478 0.00 0.00 37.60 3.58
2505 2898 3.423539 ACTGGAAGCAGATTTGTAGCA 57.576 42.857 0.00 0.00 37.60 3.49
2506 2899 3.077359 ACTGGAAGCAGATTTGTAGCAC 58.923 45.455 0.00 0.00 37.60 4.40
2507 2900 3.076621 CTGGAAGCAGATTTGTAGCACA 58.923 45.455 0.00 0.00 0.00 4.57
2508 2901 2.813754 TGGAAGCAGATTTGTAGCACAC 59.186 45.455 0.00 0.00 0.00 3.82
2509 2902 2.162408 GGAAGCAGATTTGTAGCACACC 59.838 50.000 0.00 0.00 0.00 4.16
2510 2903 2.867109 AGCAGATTTGTAGCACACCT 57.133 45.000 0.00 0.00 0.00 4.00
2511 2904 2.430465 AGCAGATTTGTAGCACACCTG 58.570 47.619 0.00 0.00 0.00 4.00
2512 2905 1.470098 GCAGATTTGTAGCACACCTGG 59.530 52.381 0.00 0.00 0.00 4.45
2513 2906 2.086869 CAGATTTGTAGCACACCTGGG 58.913 52.381 0.00 0.00 0.00 4.45
2514 2907 1.705186 AGATTTGTAGCACACCTGGGT 59.295 47.619 0.00 0.00 0.00 4.51
2523 2916 4.828409 CACCTGGGTGCTTCACAT 57.172 55.556 6.84 0.00 39.39 3.21
2524 2917 2.559785 CACCTGGGTGCTTCACATC 58.440 57.895 6.84 0.00 39.39 3.06
2531 2924 3.127425 GGGTGCTTCACATCCCTATAC 57.873 52.381 0.00 0.00 44.72 1.47
2532 2925 2.706190 GGGTGCTTCACATCCCTATACT 59.294 50.000 0.00 0.00 44.72 2.12
2533 2926 3.901844 GGGTGCTTCACATCCCTATACTA 59.098 47.826 0.00 0.00 44.72 1.82
2534 2927 4.347000 GGGTGCTTCACATCCCTATACTAA 59.653 45.833 0.00 0.00 44.72 2.24
2535 2928 5.298347 GGTGCTTCACATCCCTATACTAAC 58.702 45.833 0.00 0.00 35.86 2.34
2536 2929 5.163343 GGTGCTTCACATCCCTATACTAACA 60.163 44.000 0.00 0.00 35.86 2.41
2537 2930 6.464465 GGTGCTTCACATCCCTATACTAACAT 60.464 42.308 0.00 0.00 35.86 2.71
2538 2931 6.992715 GTGCTTCACATCCCTATACTAACATT 59.007 38.462 0.00 0.00 34.08 2.71
2539 2932 8.148351 GTGCTTCACATCCCTATACTAACATTA 58.852 37.037 0.00 0.00 34.08 1.90
2540 2933 8.710239 TGCTTCACATCCCTATACTAACATTAA 58.290 33.333 0.00 0.00 0.00 1.40
2541 2934 9.555727 GCTTCACATCCCTATACTAACATTAAA 57.444 33.333 0.00 0.00 0.00 1.52
2598 2991 8.839310 ATGCTAAGAGTATGTGATATCAAACC 57.161 34.615 7.07 0.00 0.00 3.27
2599 2992 8.023021 TGCTAAGAGTATGTGATATCAAACCT 57.977 34.615 7.07 1.70 0.00 3.50
2600 2993 7.928167 TGCTAAGAGTATGTGATATCAAACCTG 59.072 37.037 7.07 0.00 0.00 4.00
2601 2994 7.386299 GCTAAGAGTATGTGATATCAAACCTGG 59.614 40.741 7.07 0.00 0.00 4.45
2602 2995 6.179906 AGAGTATGTGATATCAAACCTGGG 57.820 41.667 7.07 0.00 0.00 4.45
2603 2996 5.667626 AGAGTATGTGATATCAAACCTGGGT 59.332 40.000 7.07 0.00 0.00 4.51
2604 2997 6.158695 AGAGTATGTGATATCAAACCTGGGTT 59.841 38.462 7.07 0.00 40.45 4.11
2605 2998 6.357367 AGTATGTGATATCAAACCTGGGTTC 58.643 40.000 7.07 0.00 37.35 3.62
2606 2999 3.963129 TGTGATATCAAACCTGGGTTCC 58.037 45.455 7.07 0.00 37.35 3.62
2607 3000 3.288092 GTGATATCAAACCTGGGTTCCC 58.712 50.000 7.07 0.12 37.35 3.97
2608 3001 2.092646 TGATATCAAACCTGGGTTCCCG 60.093 50.000 1.98 0.00 37.35 5.14
2609 3002 1.659022 TATCAAACCTGGGTTCCCGA 58.341 50.000 5.42 4.01 37.35 5.14
2610 3003 0.999712 ATCAAACCTGGGTTCCCGAT 59.000 50.000 5.42 5.98 37.35 4.18
2611 3004 0.326927 TCAAACCTGGGTTCCCGATC 59.673 55.000 5.42 0.00 37.35 3.69
2612 3005 0.328258 CAAACCTGGGTTCCCGATCT 59.672 55.000 5.42 0.00 37.35 2.75
2613 3006 1.557832 CAAACCTGGGTTCCCGATCTA 59.442 52.381 5.42 0.00 37.35 1.98
2614 3007 1.201424 AACCTGGGTTCCCGATCTAC 58.799 55.000 0.00 0.00 32.09 2.59
2615 3008 0.338814 ACCTGGGTTCCCGATCTACT 59.661 55.000 0.00 0.00 0.00 2.57
2616 3009 1.041437 CCTGGGTTCCCGATCTACTC 58.959 60.000 3.27 0.00 0.00 2.59
2617 3010 1.411787 CCTGGGTTCCCGATCTACTCT 60.412 57.143 3.27 0.00 0.00 3.24
2618 3011 2.389715 CTGGGTTCCCGATCTACTCTT 58.610 52.381 3.27 0.00 0.00 2.85
2619 3012 2.101582 CTGGGTTCCCGATCTACTCTTG 59.898 54.545 3.27 0.00 0.00 3.02
2620 3013 2.108970 GGGTTCCCGATCTACTCTTGT 58.891 52.381 0.00 0.00 0.00 3.16
2621 3014 2.159085 GGGTTCCCGATCTACTCTTGTG 60.159 54.545 0.00 0.00 0.00 3.33
2622 3015 2.496470 GGTTCCCGATCTACTCTTGTGT 59.504 50.000 0.00 0.00 0.00 3.72
2623 3016 3.512680 GTTCCCGATCTACTCTTGTGTG 58.487 50.000 0.00 0.00 0.00 3.82
2624 3017 3.081710 TCCCGATCTACTCTTGTGTGA 57.918 47.619 0.00 0.00 0.00 3.58
2625 3018 3.427573 TCCCGATCTACTCTTGTGTGAA 58.572 45.455 0.00 0.00 0.00 3.18
2626 3019 3.830178 TCCCGATCTACTCTTGTGTGAAA 59.170 43.478 0.00 0.00 0.00 2.69
2627 3020 4.466370 TCCCGATCTACTCTTGTGTGAAAT 59.534 41.667 0.00 0.00 0.00 2.17
2628 3021 5.046591 TCCCGATCTACTCTTGTGTGAAATT 60.047 40.000 0.00 0.00 0.00 1.82
2629 3022 5.643777 CCCGATCTACTCTTGTGTGAAATTT 59.356 40.000 0.00 0.00 0.00 1.82
2630 3023 6.183360 CCCGATCTACTCTTGTGTGAAATTTC 60.183 42.308 11.41 11.41 0.00 2.17
2631 3024 6.454318 CCGATCTACTCTTGTGTGAAATTTCG 60.454 42.308 13.34 0.00 0.00 3.46
2632 3025 6.089551 CGATCTACTCTTGTGTGAAATTTCGT 59.910 38.462 13.34 5.23 0.00 3.85
2633 3026 6.525121 TCTACTCTTGTGTGAAATTTCGTG 57.475 37.500 13.34 2.16 0.00 4.35
2634 3027 6.277605 TCTACTCTTGTGTGAAATTTCGTGA 58.722 36.000 13.34 4.60 0.00 4.35
2635 3028 5.811399 ACTCTTGTGTGAAATTTCGTGAA 57.189 34.783 13.34 3.28 0.00 3.18
2636 3029 6.189677 ACTCTTGTGTGAAATTTCGTGAAA 57.810 33.333 13.34 0.00 34.46 2.69
2637 3030 6.616947 ACTCTTGTGTGAAATTTCGTGAAAA 58.383 32.000 13.34 3.90 33.56 2.29
2638 3031 7.087639 ACTCTTGTGTGAAATTTCGTGAAAAA 58.912 30.769 13.34 2.96 33.56 1.94
2662 3055 7.492352 AAATACTAGGAAACATATTCGTGGC 57.508 36.000 0.00 0.00 0.00 5.01
2663 3056 4.481368 ACTAGGAAACATATTCGTGGCA 57.519 40.909 0.00 0.00 0.00 4.92
2664 3057 4.839121 ACTAGGAAACATATTCGTGGCAA 58.161 39.130 0.00 0.00 0.00 4.52
2665 3058 5.250200 ACTAGGAAACATATTCGTGGCAAA 58.750 37.500 0.00 0.00 0.00 3.68
2666 3059 5.708230 ACTAGGAAACATATTCGTGGCAAAA 59.292 36.000 0.00 0.00 0.00 2.44
2667 3060 5.461032 AGGAAACATATTCGTGGCAAAAA 57.539 34.783 0.00 0.00 0.00 1.94
2737 3130 7.867445 TTTCTTCAAACAATATTTCCTTCGC 57.133 32.000 0.00 0.00 0.00 4.70
2738 3131 5.949735 TCTTCAAACAATATTTCCTTCGCC 58.050 37.500 0.00 0.00 0.00 5.54
2739 3132 5.475220 TCTTCAAACAATATTTCCTTCGCCA 59.525 36.000 0.00 0.00 0.00 5.69
2740 3133 5.054390 TCAAACAATATTTCCTTCGCCAC 57.946 39.130 0.00 0.00 0.00 5.01
2741 3134 4.520874 TCAAACAATATTTCCTTCGCCACA 59.479 37.500 0.00 0.00 0.00 4.17
2742 3135 5.010112 TCAAACAATATTTCCTTCGCCACAA 59.990 36.000 0.00 0.00 0.00 3.33
2743 3136 5.461032 AACAATATTTCCTTCGCCACAAA 57.539 34.783 0.00 0.00 0.00 2.83
2744 3137 5.659440 ACAATATTTCCTTCGCCACAAAT 57.341 34.783 0.00 0.00 0.00 2.32
2745 3138 6.767524 ACAATATTTCCTTCGCCACAAATA 57.232 33.333 0.00 0.00 0.00 1.40
2746 3139 6.560711 ACAATATTTCCTTCGCCACAAATAC 58.439 36.000 0.00 0.00 0.00 1.89
2747 3140 6.377146 ACAATATTTCCTTCGCCACAAATACT 59.623 34.615 0.00 0.00 0.00 2.12
2748 3141 7.093945 ACAATATTTCCTTCGCCACAAATACTT 60.094 33.333 0.00 0.00 0.00 2.24
2749 3142 5.722021 ATTTCCTTCGCCACAAATACTTT 57.278 34.783 0.00 0.00 0.00 2.66
2750 3143 5.523438 TTTCCTTCGCCACAAATACTTTT 57.477 34.783 0.00 0.00 0.00 2.27
2751 3144 4.759516 TCCTTCGCCACAAATACTTTTC 57.240 40.909 0.00 0.00 0.00 2.29
2752 3145 3.504520 TCCTTCGCCACAAATACTTTTCC 59.495 43.478 0.00 0.00 0.00 3.13
2753 3146 3.506067 CCTTCGCCACAAATACTTTTCCT 59.494 43.478 0.00 0.00 0.00 3.36
2754 3147 4.475944 CTTCGCCACAAATACTTTTCCTG 58.524 43.478 0.00 0.00 0.00 3.86
2755 3148 2.817258 TCGCCACAAATACTTTTCCTGG 59.183 45.455 0.00 0.00 0.00 4.45
2756 3149 2.556622 CGCCACAAATACTTTTCCTGGT 59.443 45.455 0.00 0.00 0.00 4.00
2757 3150 3.754323 CGCCACAAATACTTTTCCTGGTA 59.246 43.478 0.00 0.00 0.00 3.25
2758 3151 4.398044 CGCCACAAATACTTTTCCTGGTAT 59.602 41.667 0.00 0.00 0.00 2.73
2759 3152 5.105917 CGCCACAAATACTTTTCCTGGTATT 60.106 40.000 0.00 0.00 39.41 1.89
2760 3153 6.571537 CGCCACAAATACTTTTCCTGGTATTT 60.572 38.462 0.00 0.00 44.40 1.40
2761 3154 7.158697 GCCACAAATACTTTTCCTGGTATTTT 58.841 34.615 7.93 0.64 42.38 1.82
2762 3155 7.659799 GCCACAAATACTTTTCCTGGTATTTTT 59.340 33.333 7.93 1.46 42.38 1.94
2780 3173 3.948196 TTTTACGAAACTTCACACGGG 57.052 42.857 0.00 0.00 0.00 5.28
2781 3174 2.886862 TTACGAAACTTCACACGGGA 57.113 45.000 0.00 0.00 0.00 5.14
2782 3175 2.427232 TACGAAACTTCACACGGGAG 57.573 50.000 0.00 0.00 0.00 4.30
2784 3177 1.682854 ACGAAACTTCACACGGGAGTA 59.317 47.619 0.00 0.00 44.67 2.59
2785 3178 2.056577 CGAAACTTCACACGGGAGTAC 58.943 52.381 0.00 0.00 44.67 2.73
2786 3179 2.544277 CGAAACTTCACACGGGAGTACA 60.544 50.000 0.00 0.00 44.67 2.90
2787 3180 3.660865 GAAACTTCACACGGGAGTACAT 58.339 45.455 0.00 0.00 44.67 2.29
2788 3181 3.764237 AACTTCACACGGGAGTACATT 57.236 42.857 0.00 0.00 44.67 2.71
2789 3182 3.040147 ACTTCACACGGGAGTACATTG 57.960 47.619 0.00 0.00 44.67 2.82
2790 3183 2.631062 ACTTCACACGGGAGTACATTGA 59.369 45.455 0.00 0.00 44.67 2.57
2791 3184 3.254060 CTTCACACGGGAGTACATTGAG 58.746 50.000 0.00 0.00 44.67 3.02
2792 3185 2.521126 TCACACGGGAGTACATTGAGA 58.479 47.619 0.00 0.00 44.67 3.27
2793 3186 2.894765 TCACACGGGAGTACATTGAGAA 59.105 45.455 0.00 0.00 44.67 2.87
2794 3187 2.993899 CACACGGGAGTACATTGAGAAC 59.006 50.000 0.00 0.00 44.67 3.01
2795 3188 2.028385 ACACGGGAGTACATTGAGAACC 60.028 50.000 0.00 0.00 44.67 3.62
2796 3189 2.233922 CACGGGAGTACATTGAGAACCT 59.766 50.000 0.00 0.00 44.67 3.50
2797 3190 3.446161 CACGGGAGTACATTGAGAACCTA 59.554 47.826 0.00 0.00 44.67 3.08
2798 3191 3.700038 ACGGGAGTACATTGAGAACCTAG 59.300 47.826 0.00 0.00 44.60 3.02
2799 3192 3.068307 CGGGAGTACATTGAGAACCTAGG 59.932 52.174 7.41 7.41 0.00 3.02
2800 3193 4.031611 GGGAGTACATTGAGAACCTAGGT 58.968 47.826 9.21 9.21 0.00 3.08
2801 3194 4.470304 GGGAGTACATTGAGAACCTAGGTT 59.530 45.833 27.43 27.43 41.54 3.50
2802 3195 5.045797 GGGAGTACATTGAGAACCTAGGTTT 60.046 44.000 27.72 17.15 38.60 3.27
2803 3196 5.875359 GGAGTACATTGAGAACCTAGGTTTG 59.125 44.000 27.72 22.20 38.60 2.93
2804 3197 6.295688 GGAGTACATTGAGAACCTAGGTTTGA 60.296 42.308 27.72 14.21 38.60 2.69
2805 3198 7.259088 AGTACATTGAGAACCTAGGTTTGAT 57.741 36.000 27.72 16.78 38.60 2.57
2806 3199 8.375493 AGTACATTGAGAACCTAGGTTTGATA 57.625 34.615 27.72 14.37 38.60 2.15
2807 3200 8.993424 AGTACATTGAGAACCTAGGTTTGATAT 58.007 33.333 27.72 15.84 38.60 1.63
2808 3201 9.262358 GTACATTGAGAACCTAGGTTTGATATC 57.738 37.037 27.72 19.08 38.60 1.63
2809 3202 7.283329 ACATTGAGAACCTAGGTTTGATATCC 58.717 38.462 27.72 13.24 38.60 2.59
2810 3203 5.888982 TGAGAACCTAGGTTTGATATCCC 57.111 43.478 27.72 12.52 38.60 3.85
2811 3204 4.658901 TGAGAACCTAGGTTTGATATCCCC 59.341 45.833 27.72 11.82 38.60 4.81
2812 3205 4.641868 AGAACCTAGGTTTGATATCCCCA 58.358 43.478 27.72 0.00 38.60 4.96
2813 3206 5.043762 AGAACCTAGGTTTGATATCCCCAA 58.956 41.667 27.72 0.00 38.60 4.12
2814 3207 5.494706 AGAACCTAGGTTTGATATCCCCAAA 59.505 40.000 27.72 0.00 38.60 3.28
2815 3208 6.162241 AGAACCTAGGTTTGATATCCCCAAAT 59.838 38.462 27.72 0.00 38.60 2.32
2816 3209 6.355588 ACCTAGGTTTGATATCCCCAAATT 57.644 37.500 9.21 0.00 36.14 1.82
2817 3210 6.752091 ACCTAGGTTTGATATCCCCAAATTT 58.248 36.000 9.21 0.00 36.14 1.82
2818 3211 6.839134 ACCTAGGTTTGATATCCCCAAATTTC 59.161 38.462 9.21 0.00 36.14 2.17
2819 3212 6.838612 CCTAGGTTTGATATCCCCAAATTTCA 59.161 38.462 0.00 0.00 36.14 2.69
2820 3213 6.796785 AGGTTTGATATCCCCAAATTTCAG 57.203 37.500 0.00 0.00 36.14 3.02
2821 3214 6.502138 AGGTTTGATATCCCCAAATTTCAGA 58.498 36.000 0.00 0.00 36.14 3.27
2822 3215 7.134842 AGGTTTGATATCCCCAAATTTCAGAT 58.865 34.615 0.00 0.00 36.14 2.90
2823 3216 7.624879 AGGTTTGATATCCCCAAATTTCAGATT 59.375 33.333 0.00 0.00 36.14 2.40
2824 3217 8.267183 GGTTTGATATCCCCAAATTTCAGATTT 58.733 33.333 0.00 0.00 36.14 2.17
2825 3218 9.671279 GTTTGATATCCCCAAATTTCAGATTTT 57.329 29.630 0.00 0.00 36.14 1.82
2868 3261 9.991906 TTTCTACATTTAATATTCGTAGAGGGG 57.008 33.333 12.76 0.00 39.59 4.79
2869 3262 8.716674 TCTACATTTAATATTCGTAGAGGGGT 57.283 34.615 10.56 0.00 38.43 4.95
2870 3263 9.812347 TCTACATTTAATATTCGTAGAGGGGTA 57.188 33.333 10.56 0.00 38.43 3.69
2872 3265 7.384477 ACATTTAATATTCGTAGAGGGGTAGC 58.616 38.462 0.00 0.00 38.43 3.58
2873 3266 6.982160 TTTAATATTCGTAGAGGGGTAGCA 57.018 37.500 0.00 0.00 38.43 3.49
2874 3267 4.868314 AATATTCGTAGAGGGGTAGCAC 57.132 45.455 0.00 0.00 38.43 4.40
2875 3268 1.411041 ATTCGTAGAGGGGTAGCACC 58.589 55.000 0.00 0.00 38.43 5.01
2901 3294 7.865706 AGGTGCTCCTGTGTATTTTTATAAG 57.134 36.000 6.51 0.00 43.33 1.73
2902 3295 7.402862 AGGTGCTCCTGTGTATTTTTATAAGT 58.597 34.615 6.51 0.00 43.33 2.24
2903 3296 7.888546 AGGTGCTCCTGTGTATTTTTATAAGTT 59.111 33.333 6.51 0.00 43.33 2.66
2904 3297 9.169592 GGTGCTCCTGTGTATTTTTATAAGTTA 57.830 33.333 0.00 0.00 0.00 2.24
2905 3298 9.983804 GTGCTCCTGTGTATTTTTATAAGTTAC 57.016 33.333 0.00 0.00 0.00 2.50
2906 3299 9.953565 TGCTCCTGTGTATTTTTATAAGTTACT 57.046 29.630 0.00 0.00 0.00 2.24
2933 3326 9.469097 AGTCTATGTTATTACCTCTATAGCAGG 57.531 37.037 13.60 13.60 37.03 4.85
2934 3327 9.245481 GTCTATGTTATTACCTCTATAGCAGGT 57.755 37.037 20.64 20.64 46.60 4.00
2941 3334 9.610705 TTATTACCTCTATAGCAGGTAGTATCG 57.389 37.037 21.04 0.00 45.42 2.92
2942 3335 5.502089 ACCTCTATAGCAGGTAGTATCGT 57.498 43.478 17.36 0.00 42.91 3.73
2943 3336 6.617782 ACCTCTATAGCAGGTAGTATCGTA 57.382 41.667 17.36 0.00 42.91 3.43
2944 3337 6.642430 ACCTCTATAGCAGGTAGTATCGTAG 58.358 44.000 17.36 0.00 42.91 3.51
2945 3338 6.050432 CCTCTATAGCAGGTAGTATCGTAGG 58.950 48.000 9.07 0.00 0.00 3.18
2946 3339 6.352051 CCTCTATAGCAGGTAGTATCGTAGGT 60.352 46.154 9.07 0.00 0.00 3.08
2947 3340 6.404708 TCTATAGCAGGTAGTATCGTAGGTG 58.595 44.000 0.00 0.00 0.00 4.00
2948 3341 3.294038 AGCAGGTAGTATCGTAGGTGT 57.706 47.619 0.00 0.00 0.00 4.16
2949 3342 2.950309 AGCAGGTAGTATCGTAGGTGTG 59.050 50.000 0.00 0.00 0.00 3.82
2950 3343 2.947652 GCAGGTAGTATCGTAGGTGTGA 59.052 50.000 0.00 0.00 0.00 3.58
2951 3344 3.568853 GCAGGTAGTATCGTAGGTGTGAT 59.431 47.826 0.00 0.00 0.00 3.06
2952 3345 4.758674 GCAGGTAGTATCGTAGGTGTGATA 59.241 45.833 0.00 0.00 0.00 2.15
2953 3346 5.240183 GCAGGTAGTATCGTAGGTGTGATAA 59.760 44.000 0.00 0.00 0.00 1.75
2954 3347 6.666417 CAGGTAGTATCGTAGGTGTGATAAC 58.334 44.000 0.00 0.00 0.00 1.89
2955 3348 6.261603 CAGGTAGTATCGTAGGTGTGATAACA 59.738 42.308 0.00 0.00 0.00 2.41
2956 3349 7.002879 AGGTAGTATCGTAGGTGTGATAACAT 58.997 38.462 0.00 0.00 0.00 2.71
2957 3350 8.159447 AGGTAGTATCGTAGGTGTGATAACATA 58.841 37.037 0.00 0.00 0.00 2.29
2958 3351 8.954350 GGTAGTATCGTAGGTGTGATAACATAT 58.046 37.037 0.00 0.00 0.00 1.78
2959 3352 9.770503 GTAGTATCGTAGGTGTGATAACATATG 57.229 37.037 0.00 0.00 0.00 1.78
2960 3353 7.827701 AGTATCGTAGGTGTGATAACATATGG 58.172 38.462 7.80 0.00 0.00 2.74
2961 3354 6.911250 ATCGTAGGTGTGATAACATATGGA 57.089 37.500 7.80 0.00 0.00 3.41
2962 3355 6.080648 TCGTAGGTGTGATAACATATGGAC 57.919 41.667 7.80 0.00 0.00 4.02
2963 3356 5.831525 TCGTAGGTGTGATAACATATGGACT 59.168 40.000 7.80 0.00 0.00 3.85
2964 3357 6.322969 TCGTAGGTGTGATAACATATGGACTT 59.677 38.462 7.80 0.00 0.00 3.01
2965 3358 6.984474 CGTAGGTGTGATAACATATGGACTTT 59.016 38.462 7.80 0.00 0.00 2.66
2966 3359 7.169308 CGTAGGTGTGATAACATATGGACTTTC 59.831 40.741 7.80 0.00 0.00 2.62
2967 3360 6.957631 AGGTGTGATAACATATGGACTTTCA 58.042 36.000 7.80 0.37 0.00 2.69
2968 3361 7.577303 AGGTGTGATAACATATGGACTTTCAT 58.423 34.615 7.80 0.00 0.00 2.57
2969 3362 8.055181 AGGTGTGATAACATATGGACTTTCATT 58.945 33.333 7.80 0.00 0.00 2.57
2970 3363 8.686334 GGTGTGATAACATATGGACTTTCATTT 58.314 33.333 7.80 0.00 0.00 2.32
2984 3377 9.832445 TGGACTTTCATTTATTACTCCATAGAC 57.168 33.333 0.00 0.00 0.00 2.59
2999 3392 8.525290 ACTCCATAGACTCAATTTTTATTGGG 57.475 34.615 0.00 0.00 37.99 4.12
3000 3393 8.336235 ACTCCATAGACTCAATTTTTATTGGGA 58.664 33.333 4.85 0.00 35.64 4.37
3001 3394 9.189156 CTCCATAGACTCAATTTTTATTGGGAA 57.811 33.333 4.85 0.00 35.64 3.97
3002 3395 9.189156 TCCATAGACTCAATTTTTATTGGGAAG 57.811 33.333 4.85 0.00 35.64 3.46
3003 3396 7.922811 CCATAGACTCAATTTTTATTGGGAAGC 59.077 37.037 4.85 0.00 35.64 3.86
3004 3397 5.954335 AGACTCAATTTTTATTGGGAAGCG 58.046 37.500 4.85 0.00 35.64 4.68
3005 3398 5.476945 AGACTCAATTTTTATTGGGAAGCGT 59.523 36.000 4.85 0.00 35.64 5.07
3006 3399 6.015434 AGACTCAATTTTTATTGGGAAGCGTT 60.015 34.615 4.85 0.00 35.64 4.84
3007 3400 7.175990 AGACTCAATTTTTATTGGGAAGCGTTA 59.824 33.333 4.85 0.00 35.64 3.18
3008 3401 7.836842 ACTCAATTTTTATTGGGAAGCGTTAT 58.163 30.769 4.85 0.00 35.64 1.89
3009 3402 7.759433 ACTCAATTTTTATTGGGAAGCGTTATG 59.241 33.333 4.85 0.00 35.64 1.90
3010 3403 6.533367 TCAATTTTTATTGGGAAGCGTTATGC 59.467 34.615 0.00 0.00 36.63 3.14
3011 3404 8.571757 TCAATTTTTATTGGGAAGCGTTATGCG 61.572 37.037 0.00 0.00 39.24 4.73
3025 3418 5.685841 GCGTTATGCGATGGTAAATTATGT 58.314 37.500 0.00 0.00 44.77 2.29
3026 3419 5.563751 GCGTTATGCGATGGTAAATTATGTG 59.436 40.000 0.00 0.00 44.77 3.21
3027 3420 6.077197 CGTTATGCGATGGTAAATTATGTGG 58.923 40.000 0.00 0.00 44.77 4.17
3028 3421 3.980646 TGCGATGGTAAATTATGTGGC 57.019 42.857 0.00 0.00 0.00 5.01
3029 3422 3.550820 TGCGATGGTAAATTATGTGGCT 58.449 40.909 0.00 0.00 0.00 4.75
3030 3423 3.563808 TGCGATGGTAAATTATGTGGCTC 59.436 43.478 0.00 0.00 0.00 4.70
3031 3424 3.815401 GCGATGGTAAATTATGTGGCTCT 59.185 43.478 0.00 0.00 0.00 4.09
3032 3425 4.083802 GCGATGGTAAATTATGTGGCTCTC 60.084 45.833 0.00 0.00 0.00 3.20
3033 3426 4.150627 CGATGGTAAATTATGTGGCTCTCG 59.849 45.833 0.00 0.00 0.00 4.04
3034 3427 3.202906 TGGTAAATTATGTGGCTCTCGC 58.797 45.455 0.00 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.055591 CGTCGAATCCCTCTTCATCATG 58.944 50.000 0.00 0.00 0.00 3.07
1 2 2.036475 CCGTCGAATCCCTCTTCATCAT 59.964 50.000 0.00 0.00 0.00 2.45
2 3 1.409064 CCGTCGAATCCCTCTTCATCA 59.591 52.381 0.00 0.00 0.00 3.07
3 4 1.870167 GCCGTCGAATCCCTCTTCATC 60.870 57.143 0.00 0.00 0.00 2.92
5 6 1.515954 GCCGTCGAATCCCTCTTCA 59.484 57.895 0.00 0.00 0.00 3.02
6 7 1.227292 GGCCGTCGAATCCCTCTTC 60.227 63.158 0.00 0.00 0.00 2.87
7 8 1.686110 AGGCCGTCGAATCCCTCTT 60.686 57.895 0.00 0.00 0.00 2.85
9 10 2.107141 CAGGCCGTCGAATCCCTC 59.893 66.667 0.00 0.00 0.00 4.30
12 13 3.195698 GTGCAGGCCGTCGAATCC 61.196 66.667 0.00 0.00 0.00 3.01
17 18 1.635663 CCTAAAAGTGCAGGCCGTCG 61.636 60.000 0.00 0.00 0.00 5.12
39 40 1.349026 CATACTTGAGCCGGGGATGAT 59.651 52.381 2.18 0.00 0.00 2.45
40 41 0.758734 CATACTTGAGCCGGGGATGA 59.241 55.000 2.18 0.00 0.00 2.92
41 42 0.469917 ACATACTTGAGCCGGGGATG 59.530 55.000 2.18 0.11 0.00 3.51
42 43 1.141053 GAACATACTTGAGCCGGGGAT 59.859 52.381 2.18 0.00 0.00 3.85
43 44 0.539986 GAACATACTTGAGCCGGGGA 59.460 55.000 2.18 0.00 0.00 4.81
44 45 0.251916 TGAACATACTTGAGCCGGGG 59.748 55.000 2.18 0.00 0.00 5.73
45 46 2.213499 GATGAACATACTTGAGCCGGG 58.787 52.381 2.18 0.00 0.00 5.73
51 52 6.867550 AGTCTTGATCGATGAACATACTTGA 58.132 36.000 0.54 0.00 0.00 3.02
58 59 3.260632 TGGGAAGTCTTGATCGATGAACA 59.739 43.478 0.54 0.00 0.00 3.18
73 74 0.912486 AGCGCCTAAAGATGGGAAGT 59.088 50.000 2.29 0.00 0.00 3.01
110 127 4.323417 TCTTTCACCTGCACGAACATTAT 58.677 39.130 0.00 0.00 0.00 1.28
115 132 1.261619 CACTCTTTCACCTGCACGAAC 59.738 52.381 0.00 0.00 0.00 3.95
151 168 7.332557 TCGGTAAAGAGGTTGCAATTAGATTA 58.667 34.615 0.59 0.00 0.00 1.75
153 170 5.741011 TCGGTAAAGAGGTTGCAATTAGAT 58.259 37.500 0.59 0.00 0.00 1.98
164 181 2.302157 CCAAGGACTTCGGTAAAGAGGT 59.698 50.000 0.00 0.00 38.44 3.85
180 197 3.861840 TGCTCGAAGAAATACTCCAAGG 58.138 45.455 0.00 0.00 34.09 3.61
181 198 6.507900 TCTATGCTCGAAGAAATACTCCAAG 58.492 40.000 0.00 0.00 34.09 3.61
188 205 8.585018 TGGTATCAATCTATGCTCGAAGAAATA 58.415 33.333 0.00 0.00 34.09 1.40
202 219 9.904198 TGAAAACATCTTCATGGTATCAATCTA 57.096 29.630 0.00 0.00 33.82 1.98
265 285 9.753674 TTTGATCTAAGACCCAAGAAAATACAT 57.246 29.630 0.00 0.00 0.00 2.29
334 354 7.158099 AGCCTGTTATTTTCTTTGATACACC 57.842 36.000 0.00 0.00 0.00 4.16
339 359 7.315890 GCTGTTAGCCTGTTATTTTCTTTGAT 58.684 34.615 0.00 0.00 34.48 2.57
342 362 5.699839 CGCTGTTAGCCTGTTATTTTCTTT 58.300 37.500 0.00 0.00 38.18 2.52
345 366 3.119990 TGCGCTGTTAGCCTGTTATTTTC 60.120 43.478 9.73 0.00 38.18 2.29
391 412 2.341257 TGCGCTGTTTGCTTTCAAAAA 58.659 38.095 9.73 0.00 43.12 1.94
392 413 1.925847 CTGCGCTGTTTGCTTTCAAAA 59.074 42.857 9.73 0.00 43.12 2.44
474 802 4.788690 CATGCACCATCTACTAGTACGAG 58.211 47.826 0.00 0.91 0.00 4.18
581 909 3.140814 GGATGTTTGCCGGAGCCC 61.141 66.667 5.05 0.00 38.69 5.19
599 927 1.302832 GGTGGAGGAGTGTTGCAGG 60.303 63.158 0.00 0.00 0.00 4.85
764 1092 1.547755 AGGAGGAGGAGGGACAGGA 60.548 63.158 0.00 0.00 0.00 3.86
1624 1952 2.360475 GAACTCCTGGCAGTGGGC 60.360 66.667 14.43 0.00 43.74 5.36
2031 2359 0.179121 GCATCGATCACACGGTGGTA 60.179 55.000 13.48 0.00 43.42 3.25
2033 2361 2.516589 CGCATCGATCACACGGTGG 61.517 63.158 13.48 1.73 43.42 4.61
2143 2477 1.494721 GAAGATATCCCAAGGCCACCA 59.505 52.381 5.01 0.00 0.00 4.17
2172 2506 0.106149 GCCCCGATCGATAACCTTGT 59.894 55.000 18.66 0.00 0.00 3.16
2197 2531 8.925700 CAAGAATTAATTAAACTTGCTTCACCC 58.074 33.333 22.93 0.00 32.05 4.61
2267 2637 9.767684 GAATACAAATAACACATCAATGTCGAA 57.232 29.630 0.00 0.00 39.39 3.71
2295 2666 5.079643 TGATCCAAAGAAGAGGGGAAAAAG 58.920 41.667 0.00 0.00 32.25 2.27
2301 2672 7.507797 AGATATATGATCCAAAGAAGAGGGG 57.492 40.000 0.00 0.00 0.00 4.79
2302 2673 9.228949 CAAAGATATATGATCCAAAGAAGAGGG 57.771 37.037 0.00 0.00 0.00 4.30
2313 2684 9.920946 TTAATTAGGGGCAAAGATATATGATCC 57.079 33.333 0.00 0.00 0.00 3.36
2325 2696 6.558488 AATGCTGATTTAATTAGGGGCAAA 57.442 33.333 0.00 0.00 32.28 3.68
2357 2728 8.524870 AGTAACATAAACTAGTAAACACGTGG 57.475 34.615 21.57 2.04 0.00 4.94
2386 2770 6.604171 TGCATAACAATCTTCCCACTATGAT 58.396 36.000 0.00 0.00 0.00 2.45
2395 2779 9.277783 AGATAGTAACATGCATAACAATCTTCC 57.722 33.333 0.00 0.00 0.00 3.46
2422 2815 2.308570 TGTTACTGCCCACCATGAAGAT 59.691 45.455 0.00 0.00 0.00 2.40
2423 2816 1.702401 TGTTACTGCCCACCATGAAGA 59.298 47.619 0.00 0.00 0.00 2.87
2424 2817 2.198827 TGTTACTGCCCACCATGAAG 57.801 50.000 0.00 0.00 0.00 3.02
2425 2818 2.897271 ATGTTACTGCCCACCATGAA 57.103 45.000 0.00 0.00 0.00 2.57
2436 2829 6.203338 TGCATGATGCTACACATATGTTACTG 59.797 38.462 19.19 0.00 45.31 2.74
2438 2831 6.544038 TGCATGATGCTACACATATGTTAC 57.456 37.500 19.19 0.00 45.31 2.50
2452 2845 7.359431 CCGAATAAATAATGGTTTGCATGATGC 60.359 37.037 11.12 11.12 45.29 3.91
2453 2846 7.866898 TCCGAATAAATAATGGTTTGCATGATG 59.133 33.333 0.00 0.00 0.00 3.07
2459 2852 6.215845 AGCATCCGAATAAATAATGGTTTGC 58.784 36.000 0.00 0.00 33.32 3.68
2461 2854 9.131791 AGTAAGCATCCGAATAAATAATGGTTT 57.868 29.630 3.78 0.00 38.54 3.27
2482 2875 4.937620 TGCTACAAATCTGCTTCCAGTAAG 59.062 41.667 0.00 0.00 40.09 2.34
2483 2876 4.695455 GTGCTACAAATCTGCTTCCAGTAA 59.305 41.667 0.00 0.00 40.09 2.24
2484 2877 4.253685 GTGCTACAAATCTGCTTCCAGTA 58.746 43.478 0.00 0.00 40.09 2.74
2485 2878 3.077359 GTGCTACAAATCTGCTTCCAGT 58.923 45.455 0.00 0.00 40.09 4.00
2486 2879 3.076621 TGTGCTACAAATCTGCTTCCAG 58.923 45.455 0.00 0.00 40.54 3.86
2487 2880 2.813754 GTGTGCTACAAATCTGCTTCCA 59.186 45.455 0.00 0.00 0.00 3.53
2488 2881 2.162408 GGTGTGCTACAAATCTGCTTCC 59.838 50.000 0.00 0.00 0.00 3.46
2489 2882 3.077359 AGGTGTGCTACAAATCTGCTTC 58.923 45.455 0.00 0.00 0.00 3.86
2490 2883 2.816087 CAGGTGTGCTACAAATCTGCTT 59.184 45.455 0.00 0.00 0.00 3.91
2491 2884 2.430465 CAGGTGTGCTACAAATCTGCT 58.570 47.619 0.00 0.00 0.00 4.24
2492 2885 1.470098 CCAGGTGTGCTACAAATCTGC 59.530 52.381 0.00 0.00 0.00 4.26
2493 2886 2.086869 CCCAGGTGTGCTACAAATCTG 58.913 52.381 0.00 0.00 0.00 2.90
2494 2887 1.705186 ACCCAGGTGTGCTACAAATCT 59.295 47.619 0.00 0.00 0.00 2.40
2495 2888 1.812571 CACCCAGGTGTGCTACAAATC 59.187 52.381 8.75 0.00 40.91 2.17
2496 2889 1.909700 CACCCAGGTGTGCTACAAAT 58.090 50.000 8.75 0.00 40.91 2.32
2497 2890 3.412722 CACCCAGGTGTGCTACAAA 57.587 52.632 8.75 0.00 40.91 2.83
2504 2897 0.538057 ATGTGAAGCACCCAGGTGTG 60.538 55.000 17.82 10.67 46.90 3.82
2505 2898 0.250901 GATGTGAAGCACCCAGGTGT 60.251 55.000 17.82 0.00 46.90 4.16
2507 2900 1.380302 GGATGTGAAGCACCCAGGT 59.620 57.895 0.00 0.00 32.73 4.00
2508 2901 1.379044 GGGATGTGAAGCACCCAGG 60.379 63.158 0.00 0.00 37.93 4.45
2509 2902 0.911769 TAGGGATGTGAAGCACCCAG 59.088 55.000 0.00 0.00 39.41 4.45
2510 2903 1.595311 ATAGGGATGTGAAGCACCCA 58.405 50.000 0.00 0.00 39.41 4.51
2511 2904 2.706190 AGTATAGGGATGTGAAGCACCC 59.294 50.000 0.00 0.00 38.14 4.61
2512 2905 5.163343 TGTTAGTATAGGGATGTGAAGCACC 60.163 44.000 0.00 0.00 32.73 5.01
2513 2906 5.914033 TGTTAGTATAGGGATGTGAAGCAC 58.086 41.667 0.00 0.00 34.56 4.40
2514 2907 6.747414 ATGTTAGTATAGGGATGTGAAGCA 57.253 37.500 0.00 0.00 0.00 3.91
2515 2908 9.555727 TTTAATGTTAGTATAGGGATGTGAAGC 57.444 33.333 0.00 0.00 0.00 3.86
2572 2965 9.277783 GGTTTGATATCACATACTCTTAGCATT 57.722 33.333 4.48 0.00 0.00 3.56
2573 2966 8.654997 AGGTTTGATATCACATACTCTTAGCAT 58.345 33.333 4.48 0.00 0.00 3.79
2574 2967 7.928167 CAGGTTTGATATCACATACTCTTAGCA 59.072 37.037 4.48 0.00 0.00 3.49
2575 2968 7.386299 CCAGGTTTGATATCACATACTCTTAGC 59.614 40.741 4.48 0.00 0.00 3.09
2576 2969 7.875041 CCCAGGTTTGATATCACATACTCTTAG 59.125 40.741 4.48 0.06 0.00 2.18
2577 2970 7.347222 ACCCAGGTTTGATATCACATACTCTTA 59.653 37.037 4.48 0.00 0.00 2.10
2578 2971 6.158695 ACCCAGGTTTGATATCACATACTCTT 59.841 38.462 4.48 0.00 0.00 2.85
2579 2972 5.667626 ACCCAGGTTTGATATCACATACTCT 59.332 40.000 4.48 1.99 0.00 3.24
2580 2973 5.930135 ACCCAGGTTTGATATCACATACTC 58.070 41.667 4.48 0.00 0.00 2.59
2581 2974 5.975988 ACCCAGGTTTGATATCACATACT 57.024 39.130 4.48 0.00 0.00 2.12
2582 2975 5.531287 GGAACCCAGGTTTGATATCACATAC 59.469 44.000 4.48 4.24 38.60 2.39
2583 2976 5.690865 GGAACCCAGGTTTGATATCACATA 58.309 41.667 4.48 0.00 38.60 2.29
2584 2977 4.536765 GGAACCCAGGTTTGATATCACAT 58.463 43.478 4.48 0.00 38.60 3.21
2585 2978 3.963129 GGAACCCAGGTTTGATATCACA 58.037 45.455 4.48 0.00 38.60 3.58
2602 2995 3.192844 TCACACAAGAGTAGATCGGGAAC 59.807 47.826 0.00 0.00 0.00 3.62
2603 2996 3.427573 TCACACAAGAGTAGATCGGGAA 58.572 45.455 0.00 0.00 0.00 3.97
2604 2997 3.081710 TCACACAAGAGTAGATCGGGA 57.918 47.619 0.00 0.00 0.00 5.14
2605 2998 3.868757 TTCACACAAGAGTAGATCGGG 57.131 47.619 0.00 0.00 0.00 5.14
2606 2999 6.454318 CGAAATTTCACACAAGAGTAGATCGG 60.454 42.308 17.99 0.00 0.00 4.18
2607 3000 6.089551 ACGAAATTTCACACAAGAGTAGATCG 59.910 38.462 17.99 1.23 0.00 3.69
2608 3001 7.116376 TCACGAAATTTCACACAAGAGTAGATC 59.884 37.037 17.99 0.00 0.00 2.75
2609 3002 6.929049 TCACGAAATTTCACACAAGAGTAGAT 59.071 34.615 17.99 0.00 0.00 1.98
2610 3003 6.277605 TCACGAAATTTCACACAAGAGTAGA 58.722 36.000 17.99 3.78 0.00 2.59
2611 3004 6.525121 TCACGAAATTTCACACAAGAGTAG 57.475 37.500 17.99 0.06 0.00 2.57
2612 3005 6.912203 TTCACGAAATTTCACACAAGAGTA 57.088 33.333 17.99 0.00 0.00 2.59
2613 3006 5.811399 TTCACGAAATTTCACACAAGAGT 57.189 34.783 17.99 2.51 0.00 3.24
2614 3007 7.504922 TTTTTCACGAAATTTCACACAAGAG 57.495 32.000 17.99 1.90 0.00 2.85
2636 3029 8.403236 GCCACGAATATGTTTCCTAGTATTTTT 58.597 33.333 0.00 0.00 0.00 1.94
2637 3030 7.554835 TGCCACGAATATGTTTCCTAGTATTTT 59.445 33.333 0.00 0.00 0.00 1.82
2638 3031 7.051623 TGCCACGAATATGTTTCCTAGTATTT 58.948 34.615 0.00 0.00 0.00 1.40
2639 3032 6.588204 TGCCACGAATATGTTTCCTAGTATT 58.412 36.000 0.00 0.00 0.00 1.89
2640 3033 6.169557 TGCCACGAATATGTTTCCTAGTAT 57.830 37.500 0.00 0.00 0.00 2.12
2641 3034 5.601583 TGCCACGAATATGTTTCCTAGTA 57.398 39.130 0.00 0.00 0.00 1.82
2642 3035 4.481368 TGCCACGAATATGTTTCCTAGT 57.519 40.909 0.00 0.00 0.00 2.57
2643 3036 5.811399 TTTGCCACGAATATGTTTCCTAG 57.189 39.130 0.00 0.00 0.00 3.02
2644 3037 6.576662 TTTTTGCCACGAATATGTTTCCTA 57.423 33.333 0.00 0.00 0.00 2.94
2645 3038 5.461032 TTTTTGCCACGAATATGTTTCCT 57.539 34.783 0.00 0.00 0.00 3.36
2711 3104 8.760569 GCGAAGGAAATATTGTTTGAAGAAAAA 58.239 29.630 0.00 0.00 0.00 1.94
2712 3105 7.383843 GGCGAAGGAAATATTGTTTGAAGAAAA 59.616 33.333 0.00 0.00 0.00 2.29
2713 3106 6.866248 GGCGAAGGAAATATTGTTTGAAGAAA 59.134 34.615 0.00 0.00 0.00 2.52
2714 3107 6.015856 TGGCGAAGGAAATATTGTTTGAAGAA 60.016 34.615 0.00 0.00 0.00 2.52
2715 3108 5.475220 TGGCGAAGGAAATATTGTTTGAAGA 59.525 36.000 0.00 0.00 0.00 2.87
2716 3109 5.572896 GTGGCGAAGGAAATATTGTTTGAAG 59.427 40.000 0.00 0.00 0.00 3.02
2717 3110 5.010112 TGTGGCGAAGGAAATATTGTTTGAA 59.990 36.000 0.00 0.00 0.00 2.69
2718 3111 4.520874 TGTGGCGAAGGAAATATTGTTTGA 59.479 37.500 0.00 0.00 0.00 2.69
2719 3112 4.804108 TGTGGCGAAGGAAATATTGTTTG 58.196 39.130 0.00 0.00 0.00 2.93
2720 3113 5.461032 TTGTGGCGAAGGAAATATTGTTT 57.539 34.783 0.00 0.00 0.00 2.83
2721 3114 5.461032 TTTGTGGCGAAGGAAATATTGTT 57.539 34.783 0.00 0.00 0.00 2.83
2722 3115 5.659440 ATTTGTGGCGAAGGAAATATTGT 57.341 34.783 0.00 0.00 0.00 2.71
2723 3116 6.795399 AGTATTTGTGGCGAAGGAAATATTG 58.205 36.000 0.00 0.00 0.00 1.90
2724 3117 7.404671 AAGTATTTGTGGCGAAGGAAATATT 57.595 32.000 0.00 0.00 0.00 1.28
2725 3118 7.404671 AAAGTATTTGTGGCGAAGGAAATAT 57.595 32.000 0.00 0.00 36.60 1.28
2726 3119 6.827586 AAAGTATTTGTGGCGAAGGAAATA 57.172 33.333 0.00 0.00 36.60 1.40
2727 3120 5.722021 AAAGTATTTGTGGCGAAGGAAAT 57.278 34.783 0.00 0.00 36.60 2.17
2728 3121 5.508320 GGAAAAGTATTTGTGGCGAAGGAAA 60.508 40.000 0.00 0.00 39.02 3.13
2729 3122 4.022676 GGAAAAGTATTTGTGGCGAAGGAA 60.023 41.667 0.00 0.00 39.02 3.36
2730 3123 3.504520 GGAAAAGTATTTGTGGCGAAGGA 59.495 43.478 0.00 0.00 39.02 3.36
2731 3124 3.506067 AGGAAAAGTATTTGTGGCGAAGG 59.494 43.478 0.00 0.00 39.02 3.46
2732 3125 4.475944 CAGGAAAAGTATTTGTGGCGAAG 58.524 43.478 0.00 0.00 39.02 3.79
2733 3126 3.254657 CCAGGAAAAGTATTTGTGGCGAA 59.745 43.478 0.00 0.00 39.02 4.70
2734 3127 2.817258 CCAGGAAAAGTATTTGTGGCGA 59.183 45.455 0.00 0.00 39.02 5.54
2735 3128 2.556622 ACCAGGAAAAGTATTTGTGGCG 59.443 45.455 0.00 0.00 39.02 5.69
2736 3129 5.914898 ATACCAGGAAAAGTATTTGTGGC 57.085 39.130 0.00 0.00 39.02 5.01
2759 3152 3.937706 TCCCGTGTGAAGTTTCGTAAAAA 59.062 39.130 0.00 0.00 0.00 1.94
2760 3153 3.529533 TCCCGTGTGAAGTTTCGTAAAA 58.470 40.909 0.00 0.00 0.00 1.52
2761 3154 3.125316 CTCCCGTGTGAAGTTTCGTAAA 58.875 45.455 0.00 0.00 0.00 2.01
2762 3155 2.101249 ACTCCCGTGTGAAGTTTCGTAA 59.899 45.455 0.00 0.00 0.00 3.18
2763 3156 1.682854 ACTCCCGTGTGAAGTTTCGTA 59.317 47.619 0.00 0.00 0.00 3.43
2764 3157 0.462789 ACTCCCGTGTGAAGTTTCGT 59.537 50.000 0.00 0.00 0.00 3.85
2765 3158 2.056577 GTACTCCCGTGTGAAGTTTCG 58.943 52.381 0.00 0.00 0.00 3.46
2766 3159 3.102052 TGTACTCCCGTGTGAAGTTTC 57.898 47.619 0.00 0.00 0.00 2.78
2767 3160 3.764237 ATGTACTCCCGTGTGAAGTTT 57.236 42.857 0.00 0.00 0.00 2.66
2768 3161 3.070446 TCAATGTACTCCCGTGTGAAGTT 59.930 43.478 0.00 0.00 0.00 2.66
2769 3162 2.631062 TCAATGTACTCCCGTGTGAAGT 59.369 45.455 0.00 0.00 0.00 3.01
2770 3163 3.056821 TCTCAATGTACTCCCGTGTGAAG 60.057 47.826 0.00 0.00 0.00 3.02
2771 3164 2.894765 TCTCAATGTACTCCCGTGTGAA 59.105 45.455 0.00 0.00 0.00 3.18
2772 3165 2.521126 TCTCAATGTACTCCCGTGTGA 58.479 47.619 0.00 0.00 0.00 3.58
2773 3166 2.993899 GTTCTCAATGTACTCCCGTGTG 59.006 50.000 0.00 0.00 0.00 3.82
2774 3167 2.028385 GGTTCTCAATGTACTCCCGTGT 60.028 50.000 0.00 0.00 0.00 4.49
2775 3168 2.233922 AGGTTCTCAATGTACTCCCGTG 59.766 50.000 0.00 0.00 0.00 4.94
2776 3169 2.537143 AGGTTCTCAATGTACTCCCGT 58.463 47.619 0.00 0.00 0.00 5.28
2777 3170 3.068307 CCTAGGTTCTCAATGTACTCCCG 59.932 52.174 0.00 0.00 0.00 5.14
2778 3171 4.031611 ACCTAGGTTCTCAATGTACTCCC 58.968 47.826 9.21 0.00 0.00 4.30
2779 3172 5.678955 AACCTAGGTTCTCAATGTACTCC 57.321 43.478 21.96 0.00 32.09 3.85
2780 3173 6.698380 TCAAACCTAGGTTCTCAATGTACTC 58.302 40.000 27.24 0.00 37.35 2.59
2781 3174 6.681729 TCAAACCTAGGTTCTCAATGTACT 57.318 37.500 27.24 4.96 37.35 2.73
2782 3175 9.262358 GATATCAAACCTAGGTTCTCAATGTAC 57.738 37.037 27.24 9.95 37.35 2.90
2783 3176 8.429641 GGATATCAAACCTAGGTTCTCAATGTA 58.570 37.037 27.24 14.89 37.35 2.29
2784 3177 7.283329 GGATATCAAACCTAGGTTCTCAATGT 58.717 38.462 27.24 15.29 37.35 2.71
2785 3178 6.712547 GGGATATCAAACCTAGGTTCTCAATG 59.287 42.308 27.24 20.21 37.35 2.82
2786 3179 6.183361 GGGGATATCAAACCTAGGTTCTCAAT 60.183 42.308 27.24 17.61 37.35 2.57
2787 3180 5.132144 GGGGATATCAAACCTAGGTTCTCAA 59.868 44.000 27.24 13.84 37.35 3.02
2788 3181 4.658901 GGGGATATCAAACCTAGGTTCTCA 59.341 45.833 27.24 14.22 37.35 3.27
2789 3182 4.658901 TGGGGATATCAAACCTAGGTTCTC 59.341 45.833 27.24 13.64 37.35 2.87
2790 3183 4.641868 TGGGGATATCAAACCTAGGTTCT 58.358 43.478 27.24 16.68 37.35 3.01
2791 3184 5.382664 TTGGGGATATCAAACCTAGGTTC 57.617 43.478 27.24 13.65 37.35 3.62
2792 3185 5.806955 TTTGGGGATATCAAACCTAGGTT 57.193 39.130 21.96 21.96 40.45 3.50
2793 3186 6.355588 AATTTGGGGATATCAAACCTAGGT 57.644 37.500 9.21 9.21 37.00 3.08
2794 3187 6.838612 TGAAATTTGGGGATATCAAACCTAGG 59.161 38.462 7.41 7.41 37.00 3.02
2795 3188 7.779798 TCTGAAATTTGGGGATATCAAACCTAG 59.220 37.037 4.83 0.00 37.00 3.02
2796 3189 7.647827 TCTGAAATTTGGGGATATCAAACCTA 58.352 34.615 4.83 0.00 37.00 3.08
2797 3190 6.502138 TCTGAAATTTGGGGATATCAAACCT 58.498 36.000 4.83 0.00 37.00 3.50
2798 3191 6.790232 TCTGAAATTTGGGGATATCAAACC 57.210 37.500 4.83 4.34 37.00 3.27
2799 3192 9.671279 AAAATCTGAAATTTGGGGATATCAAAC 57.329 29.630 4.83 0.00 37.00 2.93
2842 3235 9.991906 CCCCTCTACGAATATTAAATGTAGAAA 57.008 33.333 14.87 2.14 40.50 2.52
2843 3236 9.151177 ACCCCTCTACGAATATTAAATGTAGAA 57.849 33.333 14.87 5.53 40.50 2.10
2844 3237 8.716674 ACCCCTCTACGAATATTAAATGTAGA 57.283 34.615 13.96 13.96 39.21 2.59
2846 3239 8.526147 GCTACCCCTCTACGAATATTAAATGTA 58.474 37.037 0.00 0.00 0.00 2.29
2847 3240 7.015877 TGCTACCCCTCTACGAATATTAAATGT 59.984 37.037 0.00 0.00 0.00 2.71
2848 3241 7.331193 GTGCTACCCCTCTACGAATATTAAATG 59.669 40.741 0.00 0.00 0.00 2.32
2849 3242 7.384477 GTGCTACCCCTCTACGAATATTAAAT 58.616 38.462 0.00 0.00 0.00 1.40
2850 3243 6.239402 GGTGCTACCCCTCTACGAATATTAAA 60.239 42.308 0.00 0.00 30.04 1.52
2851 3244 5.244626 GGTGCTACCCCTCTACGAATATTAA 59.755 44.000 0.00 0.00 30.04 1.40
2852 3245 4.768968 GGTGCTACCCCTCTACGAATATTA 59.231 45.833 0.00 0.00 30.04 0.98
2853 3246 3.577415 GGTGCTACCCCTCTACGAATATT 59.423 47.826 0.00 0.00 30.04 1.28
2854 3247 3.163467 GGTGCTACCCCTCTACGAATAT 58.837 50.000 0.00 0.00 30.04 1.28
2855 3248 2.590821 GGTGCTACCCCTCTACGAATA 58.409 52.381 0.00 0.00 30.04 1.75
2856 3249 1.411041 GGTGCTACCCCTCTACGAAT 58.589 55.000 0.00 0.00 30.04 3.34
2857 3250 2.892025 GGTGCTACCCCTCTACGAA 58.108 57.895 0.00 0.00 30.04 3.85
2858 3251 4.672251 GGTGCTACCCCTCTACGA 57.328 61.111 0.00 0.00 30.04 3.43
2878 3271 7.625828 ACTTATAAAAATACACAGGAGCACC 57.374 36.000 0.00 0.00 0.00 5.01
2879 3272 9.983804 GTAACTTATAAAAATACACAGGAGCAC 57.016 33.333 0.00 0.00 0.00 4.40
2880 3273 9.953565 AGTAACTTATAAAAATACACAGGAGCA 57.046 29.630 0.00 0.00 0.00 4.26
2907 3300 9.469097 CCTGCTATAGAGGTAATAACATAGACT 57.531 37.037 3.21 0.00 0.00 3.24
2908 3301 9.245481 ACCTGCTATAGAGGTAATAACATAGAC 57.755 37.037 17.36 0.00 42.35 2.59
2915 3308 9.610705 CGATACTACCTGCTATAGAGGTAATAA 57.389 37.037 21.52 14.53 43.94 1.40
2916 3309 8.766476 ACGATACTACCTGCTATAGAGGTAATA 58.234 37.037 21.52 18.59 43.94 0.98
2917 3310 7.631933 ACGATACTACCTGCTATAGAGGTAAT 58.368 38.462 21.52 17.56 43.94 1.89
2918 3311 7.013823 ACGATACTACCTGCTATAGAGGTAA 57.986 40.000 21.52 13.85 43.94 2.85
2919 3312 6.617782 ACGATACTACCTGCTATAGAGGTA 57.382 41.667 20.66 20.66 42.35 3.08
2920 3313 5.502089 ACGATACTACCTGCTATAGAGGT 57.498 43.478 20.64 20.64 46.10 3.85
2921 3314 6.050432 CCTACGATACTACCTGCTATAGAGG 58.950 48.000 3.21 9.93 36.57 3.69
2922 3315 6.535865 CACCTACGATACTACCTGCTATAGAG 59.464 46.154 3.21 0.00 0.00 2.43
2923 3316 6.013898 ACACCTACGATACTACCTGCTATAGA 60.014 42.308 3.21 0.00 0.00 1.98
2924 3317 6.092396 CACACCTACGATACTACCTGCTATAG 59.908 46.154 0.00 0.00 0.00 1.31
2925 3318 5.936372 CACACCTACGATACTACCTGCTATA 59.064 44.000 0.00 0.00 0.00 1.31
2926 3319 4.760715 CACACCTACGATACTACCTGCTAT 59.239 45.833 0.00 0.00 0.00 2.97
2927 3320 4.132336 CACACCTACGATACTACCTGCTA 58.868 47.826 0.00 0.00 0.00 3.49
2928 3321 2.950309 CACACCTACGATACTACCTGCT 59.050 50.000 0.00 0.00 0.00 4.24
2929 3322 2.947652 TCACACCTACGATACTACCTGC 59.052 50.000 0.00 0.00 0.00 4.85
2930 3323 6.261603 TGTTATCACACCTACGATACTACCTG 59.738 42.308 0.00 0.00 0.00 4.00
2931 3324 6.359804 TGTTATCACACCTACGATACTACCT 58.640 40.000 0.00 0.00 0.00 3.08
2932 3325 6.624352 TGTTATCACACCTACGATACTACC 57.376 41.667 0.00 0.00 0.00 3.18
2933 3326 9.770503 CATATGTTATCACACCTACGATACTAC 57.229 37.037 0.00 0.00 35.03 2.73
2934 3327 8.953313 CCATATGTTATCACACCTACGATACTA 58.047 37.037 1.24 0.00 35.03 1.82
2935 3328 7.668469 TCCATATGTTATCACACCTACGATACT 59.332 37.037 1.24 0.00 35.03 2.12
2936 3329 7.754027 GTCCATATGTTATCACACCTACGATAC 59.246 40.741 1.24 0.00 35.03 2.24
2937 3330 7.668469 AGTCCATATGTTATCACACCTACGATA 59.332 37.037 1.24 0.00 35.03 2.92
2938 3331 6.493802 AGTCCATATGTTATCACACCTACGAT 59.506 38.462 1.24 0.00 35.03 3.73
2939 3332 5.831525 AGTCCATATGTTATCACACCTACGA 59.168 40.000 1.24 0.00 35.03 3.43
2940 3333 6.085555 AGTCCATATGTTATCACACCTACG 57.914 41.667 1.24 0.00 35.03 3.51
2941 3334 7.985184 TGAAAGTCCATATGTTATCACACCTAC 59.015 37.037 1.24 0.00 35.03 3.18
2942 3335 8.084985 TGAAAGTCCATATGTTATCACACCTA 57.915 34.615 1.24 0.00 35.03 3.08
2943 3336 6.957631 TGAAAGTCCATATGTTATCACACCT 58.042 36.000 1.24 0.00 35.03 4.00
2944 3337 7.807977 ATGAAAGTCCATATGTTATCACACC 57.192 36.000 1.24 0.00 35.03 4.16
2958 3351 9.832445 GTCTATGGAGTAATAAATGAAAGTCCA 57.168 33.333 0.52 0.52 43.69 4.02
2973 3366 9.627123 CCCAATAAAAATTGAGTCTATGGAGTA 57.373 33.333 0.00 0.00 33.55 2.59
2974 3367 8.336235 TCCCAATAAAAATTGAGTCTATGGAGT 58.664 33.333 0.00 0.00 33.55 3.85
2975 3368 8.752005 TCCCAATAAAAATTGAGTCTATGGAG 57.248 34.615 0.00 0.00 33.55 3.86
2976 3369 9.189156 CTTCCCAATAAAAATTGAGTCTATGGA 57.811 33.333 0.00 0.00 33.55 3.41
2977 3370 7.922811 GCTTCCCAATAAAAATTGAGTCTATGG 59.077 37.037 0.00 0.00 33.55 2.74
2978 3371 7.645340 CGCTTCCCAATAAAAATTGAGTCTATG 59.355 37.037 0.00 0.00 33.55 2.23
2979 3372 7.339466 ACGCTTCCCAATAAAAATTGAGTCTAT 59.661 33.333 0.00 0.00 33.55 1.98
2980 3373 6.657541 ACGCTTCCCAATAAAAATTGAGTCTA 59.342 34.615 0.00 0.00 33.55 2.59
2981 3374 5.476945 ACGCTTCCCAATAAAAATTGAGTCT 59.523 36.000 0.00 0.00 33.55 3.24
2982 3375 5.709966 ACGCTTCCCAATAAAAATTGAGTC 58.290 37.500 0.00 0.00 33.55 3.36
2983 3376 5.722021 ACGCTTCCCAATAAAAATTGAGT 57.278 34.783 0.00 0.00 33.55 3.41
2984 3377 7.254084 GCATAACGCTTCCCAATAAAAATTGAG 60.254 37.037 0.00 0.00 37.77 3.02
2985 3378 6.533367 GCATAACGCTTCCCAATAAAAATTGA 59.467 34.615 0.00 0.00 37.77 2.57
2986 3379 6.507771 CGCATAACGCTTCCCAATAAAAATTG 60.508 38.462 0.00 0.00 39.08 2.32
2987 3380 5.518487 CGCATAACGCTTCCCAATAAAAATT 59.482 36.000 0.00 0.00 39.08 1.82
2988 3381 5.040635 CGCATAACGCTTCCCAATAAAAAT 58.959 37.500 0.00 0.00 39.08 1.82
2989 3382 4.156190 TCGCATAACGCTTCCCAATAAAAA 59.844 37.500 0.00 0.00 43.23 1.94
2990 3383 3.690139 TCGCATAACGCTTCCCAATAAAA 59.310 39.130 0.00 0.00 43.23 1.52
2991 3384 3.271729 TCGCATAACGCTTCCCAATAAA 58.728 40.909 0.00 0.00 43.23 1.40
2992 3385 2.907634 TCGCATAACGCTTCCCAATAA 58.092 42.857 0.00 0.00 43.23 1.40
2993 3386 2.605837 TCGCATAACGCTTCCCAATA 57.394 45.000 0.00 0.00 43.23 1.90
2994 3387 1.603802 CATCGCATAACGCTTCCCAAT 59.396 47.619 0.00 0.00 43.23 3.16
2995 3388 1.013596 CATCGCATAACGCTTCCCAA 58.986 50.000 0.00 0.00 43.23 4.12
2996 3389 0.813610 CCATCGCATAACGCTTCCCA 60.814 55.000 0.00 0.00 43.23 4.37
2997 3390 0.814010 ACCATCGCATAACGCTTCCC 60.814 55.000 0.00 0.00 43.23 3.97
2998 3391 1.860676 TACCATCGCATAACGCTTCC 58.139 50.000 0.00 0.00 43.23 3.46
2999 3392 3.936902 TTTACCATCGCATAACGCTTC 57.063 42.857 0.00 0.00 43.23 3.86
3000 3393 4.893424 AATTTACCATCGCATAACGCTT 57.107 36.364 0.00 0.00 43.23 4.68
3001 3394 5.468746 ACATAATTTACCATCGCATAACGCT 59.531 36.000 0.00 0.00 43.23 5.07
3002 3395 5.563751 CACATAATTTACCATCGCATAACGC 59.436 40.000 0.00 0.00 43.23 4.84
3003 3396 6.077197 CCACATAATTTACCATCGCATAACG 58.923 40.000 0.00 0.00 45.62 3.18
3004 3397 5.856455 GCCACATAATTTACCATCGCATAAC 59.144 40.000 0.00 0.00 0.00 1.89
3005 3398 5.767665 AGCCACATAATTTACCATCGCATAA 59.232 36.000 0.00 0.00 0.00 1.90
3006 3399 5.312895 AGCCACATAATTTACCATCGCATA 58.687 37.500 0.00 0.00 0.00 3.14
3007 3400 4.144297 AGCCACATAATTTACCATCGCAT 58.856 39.130 0.00 0.00 0.00 4.73
3008 3401 3.550820 AGCCACATAATTTACCATCGCA 58.449 40.909 0.00 0.00 0.00 5.10
3009 3402 3.815401 AGAGCCACATAATTTACCATCGC 59.185 43.478 0.00 0.00 0.00 4.58
3010 3403 4.150627 CGAGAGCCACATAATTTACCATCG 59.849 45.833 0.00 0.00 0.00 3.84
3011 3404 5.597813 CGAGAGCCACATAATTTACCATC 57.402 43.478 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.