>input_sequence_62348
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-----------------------------------------------ATGGGCGCCGGGACGCAAGTGCCCCAAGCGGCG
GCGGCAGGAGTGCTCGCCGGGCCGGGAGTGCCCAAGGCGGCGGCGGCGGCGGCGGGGGGCCCGGCGGCCAAGCTGTCGCC
CGATTTCTACAGCCAGACGTGCCCACGGGCGGAGCGGATCATCGCGGAGGTGGTCCAGTCGAAGCAGATGGCGAACCCGA
CCACCGCCGCAGGCATGCTTCGCGTCTTCTTCCACGACTGCTTCGTGACCGGCTGCGACGCCTCCGTGCTGATCGCGCCC
ACCCGCTTCGCCAAATCCGAGAAGGACGCCGAGATCAACCACTCCCTCCCCGGCGACGCCTTCGACGCCGTGGTGCGCTC
CAAGTTGGCCCTGGAGCTGGAGTGCCCCGGCGTGGTTTCCTGCGCCGACGTCCTGGCCCTGGCGTCCAGGGTGCTGGTCA
CCATGACCGGAGGCCCCAGGTACCCGGTCCCGCTGGGCCGCAAGGACTCGCTCTCCTCCAGCCCCACCGCCCCCGACGTG
GAGCTCCCGCACTCCAACTTCACCGTGGGGCGCATCCTCGAGCTCTTCCTGGCCAAGGGGTTCACGGTGCAGGAGATGGT
GGCGCTCTCCGGCGCGCACACGCTCGGCTTCGCCCACTGCCAGGAGTTCGCGTCCAGGATCTACAACTACCGCGACAAGA
CCGGCAAGCCGGCGCCGTTCGACCCGACCATGAACCCGGGCTACGCCAAGGGGCTCCAGGCCGCCTGCAAGGAGTACCTC
AAGGACCCCACCATCGCCGCCTTCAACGACGTCATGACCCCCGGCAAGTTCGACAACATGTACTACGTGAACATTGAGCG
CGGCCTGGGCCTGCTGAGCACCGACGAGGACATGTGGTCGGACCTGCGCACCAGGCCCCTCGTGGAGCGCTACGCCGCCA
ACAACACCGCCTTCTTCGACGACTTCGCCCGCGCCATGGAGAAGCTCAGCATGTACGGCGTCAAGACCGGCGCCGATGGC
GAGATCAGGCGGCGCTGCGACGCCTACAACGACGGGCCTACCACCGTGTGA-----------------------------
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>chr6B_1_TraesCS6B01G339700
CATGATGAAGAGGGATTCGACGGCCTGCACTTTTAGGGGATCATCCCCGGCTCAAGTATGTTCATCGATCAAGACTTCCC
ATCTTT----------------AGGCGCTTTCAAAAACCATTACTGATAATGTTCGTGCAGGTGAAAGAGTGACAACATC
GTTGCTCTAATCTAATTGCAACCTCTTTACCGAAGTCCTTGGAGTATTTCTTCGAGCATAGATTGATACCATGAA---GA
TGTTTTCAAGAGATTTCGTTGTAATTGTAGTCATAGGAGTTACTATGTATTTTCTTGGGTCTTAGATCAAAATCGGTGTA
CCTGTAACAATTACGAGTGTGAATTAAGTTACAGGTGTATCA-AAGAAAATAACAGGCTAACAGCGCAGCTAGCTTTTTT
TTTCTTTTTTTTTTTTGAAAGCAAACAGCGCAGCTTAGCAGTCAGATAAGGCTAAAGG----------------------
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---------------------------------------------TAGTAAAAGAAACAGAGCGACGGACACGCTACTTC
GCTCGTACTAGTAGATGGTGCATGCATGTCTGCTCTGGCTCTCCAGCCTCTTGTTCCGCCTACGAGCACTCCCCGCCAAC
TCCGTTCCCGCCATTCGCTCTCCTCCACGGGCTCCGGCAAACATCCCCTGCAACACTCCTCCACCCTCCTCCCCTCTCCC
TCGCATTTCTAGGACCCCCACACACCTCGCCGGCCCTGACGTCGCCTGCTAGGACCTAGAGGGTCGAGTTAACCCAAGAA
CCGCACACCCGCAGGATCGACGTACCAAGCAGCTAGCAGCAGACATGCGCCTCCTGTCCCTCCTCCTCCTGGCCGCGGCC
ACCCTCCTCGCCGCCGCGGTGGCAGGAGTGCGCGCCGGGCCGGAAATGCCCCAAGCGGCGTCGGTGGCAGGAATGGGCGC
CGGGCCGGGAGTGCCCCAAGCGGCGGCGGCGGCAGGAATGGGCGCCGGGACGCAAGTGCCCAAAGCGGCGGCGGCGGCAG
GAGGACTCGCCGGGTCGGGAGTGCCCCAAGCGGCGGCGGCCGCAGGAATGGGCGCCGGGACGCAAGTGCCCCAAGCGGCG
GCGGCAGGAGTGCTCGCCGGGCCGGGAGTGCCCAAGGCGGCGGCGGCGGCGGCGGGGGGCCCGGCGGCCAAGCTGTCGCC
CGATTTCTACAGCCAGACGTGCCCACGGGCGGAGCGGATCATCGCGGAGGTGGTCCAGTCGAAGCAGATGGCGAACCCGA
CCACCGCCGCAGGCATGCTTCGCGTCTTCTTCCACGACTGCTTCGTGACCGGCTGCGACGCCTCCGTGCTGATCGCGCCC
ACCCGCTTCGCCAAATCCGAGAAGGACGCCGAGATCAACCACTCCCTCCCCGGCGACGCCTTCGACGCCGTGGTGCGCTC
CAAGTTGGCCCTGGAGCTGGAGTGCCCCGGCGTGGTTTCCTGCGCCGACGTCCTGGCCCTGGCGTCCAGGGTGCTGGTCA
CCATGACCGGAGGCCCCAGGTACCCGGTCCCGCTGGGCCGCAAGGACTCGCTCTCCTCCAGCCCCACCGCCCCCGACGTG
GAGCTCCCGCACTCCAACTTCACCGTGGGGCGCATCCTCGAGCTCTTCCTGGCCAAGGGGTTCACGGTGCAGGAGATGGT
GGCGCTCTCCGGCGCGCACACGCTCGGCTTCGCCCACTGCCAGGAGTTCGCGTCCAGGATCTACAACTACCGCGACAAGA
CCGGCAAGCCGGCGCCGTTCGACCCGACCATGAACCCGGGCTACGCCAAGGGGCTCCAGGCCGCCTGCAAGGAGTACCTC
AAGGACCCCACCATCGCCGCCTTCAACGACGTCATGACCCCCGGCAAGTTCGACAACATGTACTACGTGAACATTGAGCG
CGGCCTGGGCCTGCTGAGCACCGACGAGGACATGTGGTCGGACCTGCGCACCAGGCCCCTCGTGGAGCGCTACGCCGCCA
ACAACACCGCCTTCTTCGACGACTTCGCCCGCGCCATGGAGAAGCTCAGCATGTACGGCGTCAAGACCGGCGCCGATGGC
GAGATCAGGCGGCGCTGCGACGCCTACAACGACGGGCCTACCACCGTGTGATCGATGCGCGCATCCGTTCCGCCGGCGTC
GACGTCTCTGCCTACCACGAAACGTGCTGCATCGACCATTTCATGCATGCA------TGCGCGTTGAGTTTCCACATGGT
GGCCTTGGGATATCTTCGGGTGCGCACAAGGTTATCGATCGGGGCCGGCCGGGTGAAGCAAGTTTAATTAATTCT-----
-------------------------------TGTTCGATTGAGTAATCTCTTTAGTTTATGTGCGGTAAAAAAGTATTCG
ACATTGATGTGTTATTTGTATTCA-CTTTTTCCCCTCTTCTTTGGATCATATATCTTTGCCCCTAATTAAATCAGCATTT
GGTTTTTCCACGTGT-------------TTACTAGTTTATGTTACTATGATCATAGTGGGAAGATTG---------TTAT
GCATGTTACTATCTATCTTCATGGTGGGCAGTAACATATGTGTAGCATCATGCAAACCATTATTTATTCGGATGCTTACT
GGAAGCAGATTTGTAGCACACCTGGGTGCTTCACATCCCTATACTAACATTAAATTCAAAAATTACTGAGAAATTTGAAA
AAAAAATGCTAAGAGTATGTGATATCAAACCTGGGTTCCCGATCTACTCTTGTGTGAAATTTCGTGAAAAAAATACTAGG
AAACATATTCGTGGCAAAAAAGACAAAATATTTCTATGTATAGAAAAAAATTGTTTAGATGGATTTTTCTTCAAACAATA
TTTCCTTCGCCACAAATACTTTTCCTGGTATTTTTTACGAAACTTCACACGGGAGTACATTGAGAACCTAGGTTTGATAT
CCCCAAATTTCAGATTTTTTATATTTTTTATATTTTTCTACATTTAATATTCGTAGAGGGGTAGCACCCAGGTGCTCCTG
TGTATTTTTATAAGTTACTAGTCTATGTTATTACCTCTATAGCAGGTAGTATCGTAGGTGTGATAACATATGGACTTTCA
TTTATTACTCCATAGACTCAATTTTTATTGGGAAGCGTTATGCGATGGTAAATTATGTGGCTCTCGCCTCTTTATC
>chr6A_2
ATGAAGATATAGTGATTTGACGGCCTGCACTTCTAGGGGTCATCT-CCGGCACAAGTACGTTCATCGATCAAGGCTTCCC
ATCTTTTTGAATGGGCGACTCAAGGCGCTTTCAAAAAACATTACTGGTAATTTTCGTGCAGGTGAAAGAGTGACAACATC
GTTGCTCCAGTCTAATTGCAGCCTCTTTACCGAAGTT-TTGGAGCATTTCTTCGAGTAGAGATTGATACCATGAAGAAGA
TGTTTTCAAGAGATTTCATTGTAATTCTACTCATAGGAGTTACTCTGTATTTTCTTGGGTCTTAGATCAAAATCGGTGTA
CCTGTAACAATTACAAGTGTGAATAAAGTTACATGTGTTTCTAAAAAAAATAACAGGCTAACAGCCCAGCTAGTTTTTCT
TTTCTT-------TTTGAAAGCAAACAACGCAGCTTAGCAGTCAGATAAGGCTACTCTTTTGGTTCATAGGATAGGATTA
TCGTAGGAATAGGAATTTTGTAGGAATGAGATGGCGTGTATCTCAAATCTTATGAGTAGGAATAGGAATCGAGATGTCAT
TTGGTTGACACCAAAGGAATTTTTTCATTGAGTCTAGACTCATTTTTATTTTCCTATGAAATGTGGAGGATAGGAACCAA
TCCTATGTAGGAATAGGAATCCATTTTTATGAACCAAAGGGCTCTAAAGGAAAAAAATCCTATAAAAATCCTATCCTCTA
GAATTTTTATGAAATTCCTATGAAATTTCTCCAAACCAAAGAGGCTAGTAAAAGAAACAGAGCGACGGACACGCTACTTC
GTTCGTACTAGTAGATGGTGCATGCATGTCTGCTCTGCCTCTCCGGCCTCTTGTTCCGCCTAGGAGCACTCCCCGCCAAC
TCCGTTCCCGCCATTCGCTCTCCTCCACCGGCTCCGGCAAACATCCGCTGCAACACTCCACCACCCTCCTCCCCTCTCCC
TCGCATTTCTAGGACCCCCACACACCTCGCCGGCCCTGACGTCGCCTGCTAGGACCTAGAGGGTCGAGTTAACCCAAGAA
CCGCACACCCGCAGGATCGACGTACCAAGCAGCTAGCAGCAGACATGCGCCGCCTGTCCCTCCTCCTCCTGGCCGCGGCC
GCCCTCCTCGCCGCCGCGGTGGCAGGAGTGCGCGCCGGGCCGGAAATGCCCCAAGCGGCGTCGGTGGCAGGAATGGGCGC
CGGGCCGGGAGTGCCCCAAGCGGCGGCGGCGGCGGCG-------------------------------------------
-----------------------------------------GCAGGAATGGGCGCCGGGCCGCAAGTGCCCCAAGCGGCG
GCGGCAGGAGTGCTCGCCGGGCCGGGAGTGCCCCAGGCGGC---------GGCGGGGGGCCCGGCGGCCAAGCTGTCGCC
CGATTTCTACAGCCAGACGTGCCCACGGGCGGAGCGGATCATCGCGGAGGTGGTCCAGTCGAAGCAGATGGCGAACCCGA
CCACCGCCGCGGGCATGCTTCGCGTCTTCTTCCACGACTGCTTCGTGACCGGCTGCGACGCCTCCGTGCTGATCGCGCCC
ACCCGCTTCGCCAAATCCGAGAAGGACGCCGAGATCAACCACTCCCTCCCCGGCGACGCCTTCGACGCCGTGGTGCGCTC
CAAGTTGGCCCTGGAGCTGGAGTGCCCCGGCGTGGTTTCCTGCGCCGACGTCCTGGCCCTGGCGTCCAGGGTGCTGGTCA
CCATGACCGGAGGCCCCAGGTACCCGGTCCCGCTGGGCCGCAAGGACTCGCTCTCCTCCAGCCCCACCGCCCCCGACGTG
GAGCTCCCGCACTCCAACTTCACCGTGGGGCGCATCCTCGAGCTCTTCCTGGCCAAGGGGTTCACTGTGCAGGAGATGGT
GGCGCTCTCCGGCGCGCACACGCTGGGCTTCTCCCACTGCCAGGAGTTCGCGTCCAGGATCTACAACTACCGCGACAAGA
CCGGCAAGCCGGCGCCGTTCGACCCGACCATGAACCCGGGCTACGCCAAGGGGCTCCAGGCCGCCTGCAAGGAGTACCTC
AAGGACCCCACCATCGCCGCCTTCAACGACGTCATGACCCCCGGCAAGTTCGACAACATGTACTACGTGAACATTGAGCG
CGGCCTGGGCCTGCTGAGCACCGACGAGGACATGTGGTCGGACCTGCGCACCAGGCCCCTCGTGGAGCGCTACGCCGCCA
ACAACACCGCCTTCTTCGACGACTTCGCCCGCGCCATGGAGAAGCTCAGCATGTACGGCGTCAAGACCGGCGCCGATGGC
GAGATCAGGCGGCGCTGCGACGCCTACAACGACGGGCCCAACACCCTGTGATCGATGCGCGCATACGTTCCGCCGGCGTC
GACGTCTCTGCCTACCACGAAACGTGCTGCATCGACCATTGCATGCATGCATGCTTGTGCGCGTTGAGTTTCCACAGGGT
GGCCTTGGGATATCTTCGGGTGCGCTCAAGGTTATGGATCGGGACCGGCC-GGTGAAGCAAGTTTAATTCATTCTCGTTC
GATTGAGTTTTTCTTTTTCTTTGAGGGGTCTTGTTCGATTGAGTAATCTCTTTAGTTTGTGTGCGGTAAAAAAGTAATCG
ACATTGATGTCTTATTTGTATTCA-TTTTTT--CCTCTTCTTTCGATCATATATC-TTGCCTTTAATTAAATCAGCTTTT
GGTTTTTACGTGTTCTTGATTTATCATATTGCTAGACTATGTTACTATGGTCATAGTGAGAAGTAACATGCAAATATTAT
GCATGTTACTATCT----TCATGGTGGGTACTAACATATGTGTAATATCATACGAACCATTATTTATT------------
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>chr6D_248
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--------------------------GTAGTCATAGGAGTTACTCTGTATTTTCTTGGGTCTTAGATCAAGATAGGTGTA
CCTATAACAATTACGAATGTGAATAAAGGTACGTGTGTTTCT-AAAAAAATAACAGGCTAACAGCCCAGCTAGTTTTTTT
TT----------------AAGCAAACAGGGCAGCTTAGCAGTTAGCTAATGCTAAAGG----------------------
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---------------------------------------------TAGTAAAGGAAACAGAGCGACGGACACGCTACTTC
GTTCGTACTAGTAGATGGTGCATGCATGTCTGCTCTGGCTCTCCAGCCTCTTGTTTCGCCTACGAGCACTCCCCGCCAAC
TCCGTTCCCGCCATTCGCTCTCCTCCACCGGCTCCGGCAAACATCCGCTGCAACACTCCTCCACCCTCCTCCCCTCTCCC
TCGCATTTCTAGGACCCCCACACACCTCGCCGGCCCTGACGTCGCCTGCTAGGACCTAGAGGGTCGAGTTAACCCAAGAA
CCGCACACCCGCAGGATCGACGTACCAAGCAGCTAGCAGCAGACATGCGCCGCCTGTCCCTCCTCCTCCTGGCCGCGGCC
GCCCTCCTCGCCGCCGCGGTGGCAGTAGTGCGCGCCGGGCCGGAAATGCCCCAAGCGGCGTCGGTGGCAGGAATGGGCGC
CGGGCCGGGAGTGCCCCAAGCGGCGGCGGCGGCAGGAATGGGCGCCGGGACGCAAGTGCCCAAAGCGGCGGCGGCGGCAG
G---------------------------------------------AATGGGCGCCGGGACGCAAGTGCCCCAAGCGGCG
GCGGCAGGAGTGCTCGCCGGGCCGGGAGTGCCCCAGGCGGCGGCGG---------GGGGCCCGCCGGGCAAGCTGTCGCC
CGATTTCTACAGCCAGACGTGCCCACGGGCAGAGCGGATCATCGCGGAGGTGGTCCAGTCGAAGCAGATGGCGAACCCGA
CCACCGCCGCGGGCATGCTTCGCGTCTTCTTCCACGACTGCTTCGTGACCGGCTGCGACGCCTCCGTGCTGATCGCGCCC
ACCCGCTTCGCCAAATCCGAGAAGGACGCCGAGATCAACCACTCCCTCCCCGGCGACGCCTTCGACGCCGTGGTGCGCTC
CAAGTTGGCCCTGGAGCTGGAGTGCCCCGGCGTGGTTTCCTGCGCCGACGTCCTGGCCCTGGCGTCGAGGGTGCTGGTCA
CCATGACCGGAGGCCCCAGGTACCCGGTCCCGCTGGGCCGCAAGGACTCGCTCTCCTCCAGCCCCACCGCCCCCGACGTG
GAGCTCCCGCACTCCAACTTCACCGTGGGGCGCATCCTCGAGCTCTTCCTGGCCAAGGGGTTCACGGTGCAGGAGATGGT
GGCGCTCTCCGGCGCGCACACGCTGGGCTTCTCGCACTGCCAGGAGTTCGCGTCCAGGATCTACAACTACCGCGACAAGA
CCGGCAAGCCGGCGCCGTTCGACCCGACCATGAACCCGGGCTACGCCAAGGGGCTCCAGGCCGCCTGCAAGGAGTACCTC
AAGGACCCCACCATCGCCGCCTTCAACGACGTCATGACCCCCGGCAAGTTCGACAACATGTACTACGTGAACATTGAGCG
CGGCCTGGGCCTGCTGAGCACCGACGAGGACATGTGGTCGGACCTGCGCACCAGGCCCCTCGTGGAGCGCTACGCCGCCA
ACAACACCGCCTTCTTCGACGACTTCTCCCGCGCCATGGAGAAGCTCAGCATGTACGGCGTCAAGACCGGCGCCGACGGC
GAGATCAGGCGGCGCTGCGACGCCTACAACGACGGGCCCAACACCGTGTGATCGATGCGCGCATACGTTCCGCCGGCGTC
GACGTCTCTGCCTACCACGAAACG-------------------------------------CGTCGAGTTTCCACAGGGT
GGCCTCGGGATATCTTCGGGTGCGCTCAAGGTTATGGATCGGGGCCGGCC-GGTGAAGCAAGTTTAATTAATTCTCGTTC
GATTGAGTTTTTTTTTT--TTTGAGGGGTCTTGTTCGATTGAGTAATCTCTTTAGTTTGCGTGCGGTAAAAAAGTAATCG
ACATTGATGTGTTATTTGTATTCATTTTTTT--CCTCTTCTTTCGATCATGTATC-TTGCCTCTAATTAAATCAGCTTTT
GGTTTTTACACGTGT-------------TACTGTT---------------------------------------------
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>SNPs
SSSS-SSS-S--S----S--------------S------SSSSSSS-----S------S--------------S------
-------------------------------------S--------S----S----------------------------
-------S-S----------S---------------SS------S-----------S-S---------------------
-----------------S--------------------------S-----------------------------------
------------------------S--------S----S--S---S-------------------S-------S------
------SSSSSSS-------------------------------------------------------------------
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-S------------------------------------------------------------------------------
----------------------------S-----------------S---------------------------------
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---------------------------------------------------S----------------------------
S-------------------------------------------------------------------------------
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-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------
---------------------------------S------------SSSS------------------------------
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----------S---------------------------------------------------------------------
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------------------------S------S------------------------------------------------
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--------------------------------------S-S-----------------------S---------------
----------------------------------------S-----------------------------------S---
-------------------------S---------S--------------S-----------------------------
----------------------------------------------------------S-----------------S---
-------------------------S-----SS----------S-----------S-----S--------------S---
-------S----------------------S----SS------------S--------S----SSSS-------------
--------------SSSS----------S-S-------------SS-----S-S--------------SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_41
---------------------GGCCTGCACTTTTAGGGGAT---------------------------------------
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>reverse_2359
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--------------------------------------TACCACCGTGTGATCGATGC----------------------
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>forward_909
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----------CCATTCGCTCTCCTCCACG---------------------------------------------------
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>reverse_2506
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-------------------------ACAAGGTTATCGATCGGGGC-----------------------------------
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