Multiple sequence alignment - TraesCS6B01G332700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G332700 chr6B 100.000 2739 0 0 1 2739 584082293 584079555 0.000000e+00 5059.0
1 TraesCS6B01G332700 chr6D 93.516 1280 43 13 740 1998 390024327 390025587 0.000000e+00 1868.0
2 TraesCS6B01G332700 chr6D 95.023 221 11 0 2087 2307 390027533 390027753 5.610000e-92 348.0
3 TraesCS6B01G332700 chr6D 93.583 187 12 0 113 299 390006639 390006825 2.080000e-71 279.0
4 TraesCS6B01G332700 chr6D 85.366 246 24 5 1628 1867 390229568 390229807 7.580000e-61 244.0
5 TraesCS6B01G332700 chr6D 90.196 51 3 2 2331 2379 315810904 315810954 6.330000e-07 65.8
6 TraesCS6B01G332700 chr6D 89.362 47 4 1 350 395 390024200 390024246 1.060000e-04 58.4
7 TraesCS6B01G332700 chr6A 90.903 1407 61 32 948 2336 536575859 536577216 0.000000e+00 1827.0
8 TraesCS6B01G332700 chr6A 91.022 323 20 3 1 318 536575180 536575498 7.010000e-116 427.0
9 TraesCS6B01G332700 chr6A 94.118 272 12 2 399 670 551349021 551349288 7.060000e-111 411.0
10 TraesCS6B01G332700 chr6A 84.270 267 14 4 668 913 536575598 536575857 4.560000e-58 235.0
11 TraesCS6B01G332700 chr2A 95.572 271 9 1 399 669 761552220 761551953 5.420000e-117 431.0
12 TraesCS6B01G332700 chr2A 81.897 116 16 5 1381 1495 738342972 738343083 2.900000e-15 93.5
13 TraesCS6B01G332700 chr2B 93.907 279 14 1 387 665 26453970 26453695 4.220000e-113 418.0
14 TraesCS6B01G332700 chr2B 92.157 51 2 2 2331 2379 313853657 313853607 1.360000e-08 71.3
15 TraesCS6B01G332700 chr7B 94.161 274 12 2 399 672 608379613 608379344 5.460000e-112 414.0
16 TraesCS6B01G332700 chr7B 88.889 180 16 3 2562 2739 733840283 733840460 4.590000e-53 219.0
17 TraesCS6B01G332700 chr3A 94.776 268 10 2 402 669 58275074 58274811 5.460000e-112 414.0
18 TraesCS6B01G332700 chr3A 94.118 272 12 2 395 665 739283561 739283829 7.060000e-111 411.0
19 TraesCS6B01G332700 chr3A 89.091 55 4 2 2326 2379 628039435 628039488 1.760000e-07 67.6
20 TraesCS6B01G332700 chr7A 94.118 272 12 2 402 673 139052204 139051937 7.060000e-111 411.0
21 TraesCS6B01G332700 chr7A 94.118 272 12 2 399 670 404836665 404836932 7.060000e-111 411.0
22 TraesCS6B01G332700 chr7A 100.000 38 0 0 2374 2411 734276866 734276829 1.360000e-08 71.3
23 TraesCS6B01G332700 chr1A 94.118 272 12 2 402 673 358543553 358543286 7.060000e-111 411.0
24 TraesCS6B01G332700 chr5B 87.943 141 17 0 2375 2515 587471495 587471355 1.690000e-37 167.0
25 TraesCS6B01G332700 chr5B 82.000 150 21 6 2362 2508 419298420 419298566 3.700000e-24 122.0
26 TraesCS6B01G332700 chr5B 81.884 138 19 6 2374 2508 421457241 421457107 8.020000e-21 111.0
27 TraesCS6B01G332700 chr5B 78.049 164 25 9 2563 2718 517656752 517656912 2.900000e-15 93.5
28 TraesCS6B01G332700 chr5B 92.157 51 2 2 2331 2379 95474508 95474558 1.360000e-08 71.3
29 TraesCS6B01G332700 chr5B 90.196 51 3 2 2331 2379 490767876 490767926 6.330000e-07 65.8
30 TraesCS6B01G332700 chr2D 85.227 88 10 2 1408 1495 606695579 606695663 1.350000e-13 87.9
31 TraesCS6B01G332700 chr2D 92.157 51 2 2 2331 2379 485322762 485322712 1.360000e-08 71.3
32 TraesCS6B01G332700 chr7D 92.157 51 2 2 2331 2379 583558317 583558267 1.360000e-08 71.3
33 TraesCS6B01G332700 chr4A 92.157 51 2 2 2331 2379 407485023 407484973 1.360000e-08 71.3
34 TraesCS6B01G332700 chr1D 92.157 51 2 2 2331 2379 209964627 209964577 1.360000e-08 71.3
35 TraesCS6B01G332700 chrUn 97.500 40 1 0 2374 2413 109065113 109065074 4.890000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G332700 chr6B 584079555 584082293 2738 True 5059.000000 5059 100.000000 1 2739 1 chr6B.!!$R1 2738
1 TraesCS6B01G332700 chr6D 390024200 390027753 3553 False 758.133333 1868 92.633667 350 2307 3 chr6D.!!$F4 1957
2 TraesCS6B01G332700 chr6A 536575180 536577216 2036 False 829.666667 1827 88.731667 1 2336 3 chr6A.!!$F2 2335

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
856 887 0.256752 TGCATGCATACAGGAAGGCT 59.743 50.0 18.46 0.0 0.0 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2463 4375 0.107831 TTATGCTTTATCGGCGCCCT 59.892 50.0 23.46 11.53 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.496899 ATCTGGCTAAATATGCGGGG 57.503 50.000 0.00 0.00 0.00 5.73
30 31 1.476110 GGCTAAATATGCGGGGTGTGA 60.476 52.381 0.00 0.00 0.00 3.58
56 57 1.060729 TGGATGAAAGAACCCCGACA 58.939 50.000 0.00 0.00 0.00 4.35
58 59 1.278127 GGATGAAAGAACCCCGACAGA 59.722 52.381 0.00 0.00 0.00 3.41
68 69 1.877443 ACCCCGACAGAAATTGTTTCG 59.123 47.619 0.00 0.00 44.29 3.46
81 82 3.974871 TTGTTTCGCTTCTTGTAACCC 57.025 42.857 0.00 0.00 0.00 4.11
91 92 4.579869 CTTCTTGTAACCCATGCTACTGT 58.420 43.478 0.00 0.00 0.00 3.55
152 153 5.366829 AAACTATCGGCCTTACACAAAAC 57.633 39.130 0.00 0.00 0.00 2.43
160 161 4.201970 CGGCCTTACACAAAACTTCAGAAA 60.202 41.667 0.00 0.00 0.00 2.52
162 163 5.163550 GGCCTTACACAAAACTTCAGAAACT 60.164 40.000 0.00 0.00 0.00 2.66
227 233 3.937706 GAGGAAGAAGGATGTGACATGTG 59.062 47.826 1.15 0.00 0.00 3.21
228 234 3.328931 AGGAAGAAGGATGTGACATGTGT 59.671 43.478 1.15 0.00 0.00 3.72
264 270 4.457949 TCAACTGAGATAGCTACGTGTCAA 59.542 41.667 0.00 0.00 0.00 3.18
269 275 4.202121 TGAGATAGCTACGTGTCAATTCCC 60.202 45.833 0.00 0.00 0.00 3.97
273 279 1.636988 CTACGTGTCAATTCCCGTCC 58.363 55.000 0.00 0.00 34.95 4.79
308 314 7.696872 GTCACATCATCATTGAAGTCATTTCAG 59.303 37.037 0.00 0.00 46.01 3.02
318 324 3.481559 AGTCATTTCAGGAGAGGGAGA 57.518 47.619 0.00 0.00 0.00 3.71
320 326 4.171234 AGTCATTTCAGGAGAGGGAGAAA 58.829 43.478 0.00 0.00 34.83 2.52
322 328 4.697828 GTCATTTCAGGAGAGGGAGAAAAC 59.302 45.833 0.00 0.00 34.13 2.43
323 329 4.599241 TCATTTCAGGAGAGGGAGAAAACT 59.401 41.667 0.00 0.00 34.13 2.66
324 330 4.625607 TTTCAGGAGAGGGAGAAAACTC 57.374 45.455 0.00 0.00 0.00 3.01
325 331 2.171840 TCAGGAGAGGGAGAAAACTCG 58.828 52.381 0.00 0.00 38.72 4.18
327 333 2.763448 CAGGAGAGGGAGAAAACTCGAT 59.237 50.000 0.00 0.00 38.72 3.59
328 334 3.954904 CAGGAGAGGGAGAAAACTCGATA 59.045 47.826 0.00 0.00 38.72 2.92
330 336 5.024118 AGGAGAGGGAGAAAACTCGATAAA 58.976 41.667 0.00 0.00 38.72 1.40
331 337 5.484290 AGGAGAGGGAGAAAACTCGATAAAA 59.516 40.000 0.00 0.00 38.72 1.52
332 338 6.157123 AGGAGAGGGAGAAAACTCGATAAAAT 59.843 38.462 0.00 0.00 38.72 1.82
333 339 6.258947 GGAGAGGGAGAAAACTCGATAAAATG 59.741 42.308 0.00 0.00 38.72 2.32
334 340 6.947464 AGAGGGAGAAAACTCGATAAAATGA 58.053 36.000 0.00 0.00 38.72 2.57
336 342 6.712276 AGGGAGAAAACTCGATAAAATGACT 58.288 36.000 0.00 0.00 0.00 3.41
338 344 7.334671 AGGGAGAAAACTCGATAAAATGACTTC 59.665 37.037 0.00 0.00 0.00 3.01
339 345 7.119262 GGGAGAAAACTCGATAAAATGACTTCA 59.881 37.037 0.00 0.00 0.00 3.02
340 346 8.504005 GGAGAAAACTCGATAAAATGACTTCAA 58.496 33.333 0.00 0.00 0.00 2.69
341 347 9.535270 GAGAAAACTCGATAAAATGACTTCAAG 57.465 33.333 0.00 0.00 0.00 3.02
342 348 9.273016 AGAAAACTCGATAAAATGACTTCAAGA 57.727 29.630 0.00 0.00 0.00 3.02
345 351 7.588143 ACTCGATAAAATGACTTCAAGAGTG 57.412 36.000 0.00 0.00 39.19 3.51
346 352 7.378966 ACTCGATAAAATGACTTCAAGAGTGA 58.621 34.615 0.00 0.00 39.19 3.41
347 353 7.543868 ACTCGATAAAATGACTTCAAGAGTGAG 59.456 37.037 0.00 0.00 39.19 3.51
348 354 6.813649 TCGATAAAATGACTTCAAGAGTGAGG 59.186 38.462 0.00 0.00 39.19 3.86
349 355 6.813649 CGATAAAATGACTTCAAGAGTGAGGA 59.186 38.462 0.00 0.00 39.19 3.71
350 356 7.009999 CGATAAAATGACTTCAAGAGTGAGGAG 59.990 40.741 0.00 0.00 39.19 3.69
351 357 4.550076 AATGACTTCAAGAGTGAGGAGG 57.450 45.455 0.00 0.00 39.19 4.30
352 358 2.251818 TGACTTCAAGAGTGAGGAGGG 58.748 52.381 0.00 0.00 39.19 4.30
353 359 1.552792 GACTTCAAGAGTGAGGAGGGG 59.447 57.143 0.00 0.00 39.19 4.79
354 360 1.132689 ACTTCAAGAGTGAGGAGGGGT 60.133 52.381 0.00 0.00 37.17 4.95
390 396 7.497595 AGGGACCAAAACAAAAATAGACTTTC 58.502 34.615 0.00 0.00 0.00 2.62
410 416 9.767228 GACTTTCCTCTTTAATATACTCCTTCC 57.233 37.037 0.00 0.00 0.00 3.46
412 418 6.912951 TCCTCTTTAATATACTCCTTCCGG 57.087 41.667 0.00 0.00 0.00 5.14
413 419 6.379579 TCCTCTTTAATATACTCCTTCCGGT 58.620 40.000 0.00 0.00 0.00 5.28
414 420 6.492772 TCCTCTTTAATATACTCCTTCCGGTC 59.507 42.308 0.00 0.00 0.00 4.79
416 422 6.379579 TCTTTAATATACTCCTTCCGGTCCT 58.620 40.000 0.00 0.00 0.00 3.85
418 424 7.346436 TCTTTAATATACTCCTTCCGGTCCTTT 59.654 37.037 0.00 0.00 0.00 3.11
419 425 5.970501 AATATACTCCTTCCGGTCCTTTT 57.029 39.130 0.00 0.00 0.00 2.27
420 426 5.970501 ATATACTCCTTCCGGTCCTTTTT 57.029 39.130 0.00 0.00 0.00 1.94
421 427 7.441903 AATATACTCCTTCCGGTCCTTTTTA 57.558 36.000 0.00 0.00 0.00 1.52
422 428 3.413846 ACTCCTTCCGGTCCTTTTTAC 57.586 47.619 0.00 0.00 0.00 2.01
423 429 2.977580 ACTCCTTCCGGTCCTTTTTACT 59.022 45.455 0.00 0.00 0.00 2.24
426 432 3.007614 TCCTTCCGGTCCTTTTTACTCTG 59.992 47.826 0.00 0.00 0.00 3.35
427 433 2.467566 TCCGGTCCTTTTTACTCTGC 57.532 50.000 0.00 0.00 0.00 4.26
428 434 1.695242 TCCGGTCCTTTTTACTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
429 435 2.304761 TCCGGTCCTTTTTACTCTGCAT 59.695 45.455 0.00 0.00 0.00 3.96
430 436 3.516300 TCCGGTCCTTTTTACTCTGCATA 59.484 43.478 0.00 0.00 0.00 3.14
431 437 4.163458 TCCGGTCCTTTTTACTCTGCATAT 59.837 41.667 0.00 0.00 0.00 1.78
432 438 4.881850 CCGGTCCTTTTTACTCTGCATATT 59.118 41.667 0.00 0.00 0.00 1.28
434 440 6.202954 CCGGTCCTTTTTACTCTGCATATTAG 59.797 42.308 0.00 0.00 0.00 1.73
435 441 6.984474 CGGTCCTTTTTACTCTGCATATTAGA 59.016 38.462 0.00 0.00 0.00 2.10
436 442 7.657761 CGGTCCTTTTTACTCTGCATATTAGAT 59.342 37.037 0.00 0.00 0.00 1.98
437 443 9.343539 GGTCCTTTTTACTCTGCATATTAGATT 57.656 33.333 0.00 0.00 0.00 2.40
441 447 9.455847 CTTTTTACTCTGCATATTAGATTTGCC 57.544 33.333 0.00 0.00 36.56 4.52
443 449 4.960938 ACTCTGCATATTAGATTTGCCGA 58.039 39.130 0.00 0.75 36.56 5.54
445 451 5.822519 ACTCTGCATATTAGATTTGCCGAAA 59.177 36.000 0.00 0.00 36.56 3.46
446 452 6.017605 ACTCTGCATATTAGATTTGCCGAAAG 60.018 38.462 0.00 0.00 36.56 2.62
447 453 5.822519 TCTGCATATTAGATTTGCCGAAAGT 59.177 36.000 0.00 0.00 36.56 2.66
448 454 6.017934 TCTGCATATTAGATTTGCCGAAAGTC 60.018 38.462 0.00 0.00 36.56 3.01
449 455 5.588246 TGCATATTAGATTTGCCGAAAGTCA 59.412 36.000 1.85 0.00 36.56 3.41
450 456 6.094742 TGCATATTAGATTTGCCGAAAGTCAA 59.905 34.615 1.85 0.00 36.56 3.18
451 457 6.972328 GCATATTAGATTTGCCGAAAGTCAAA 59.028 34.615 0.00 0.00 36.72 2.69
452 458 7.044052 GCATATTAGATTTGCCGAAAGTCAAAC 60.044 37.037 0.00 0.00 35.34 2.93
453 459 6.575162 ATTAGATTTGCCGAAAGTCAAACT 57.425 33.333 0.00 0.00 35.34 2.66
454 460 4.918810 AGATTTGCCGAAAGTCAAACTT 57.081 36.364 0.00 0.00 40.80 2.66
473 479 5.869649 ACTTTGCTAAGTTGGACCAAATT 57.130 34.783 22.34 22.34 41.85 1.82
474 480 6.233905 ACTTTGCTAAGTTGGACCAAATTT 57.766 33.333 23.68 15.83 41.85 1.82
475 481 7.354751 ACTTTGCTAAGTTGGACCAAATTTA 57.645 32.000 23.68 16.08 41.85 1.40
476 482 7.962441 ACTTTGCTAAGTTGGACCAAATTTAT 58.038 30.769 23.68 3.97 41.85 1.40
477 483 9.084533 ACTTTGCTAAGTTGGACCAAATTTATA 57.915 29.630 23.68 6.70 41.85 0.98
573 579 9.806203 AATGATATTGGTGTTGTTATGTGAATG 57.194 29.630 0.00 0.00 0.00 2.67
574 580 8.347004 TGATATTGGTGTTGTTATGTGAATGT 57.653 30.769 0.00 0.00 0.00 2.71
575 581 8.458052 TGATATTGGTGTTGTTATGTGAATGTC 58.542 33.333 0.00 0.00 0.00 3.06
576 582 6.899393 ATTGGTGTTGTTATGTGAATGTCT 57.101 33.333 0.00 0.00 0.00 3.41
577 583 7.994425 ATTGGTGTTGTTATGTGAATGTCTA 57.006 32.000 0.00 0.00 0.00 2.59
578 584 7.994425 TTGGTGTTGTTATGTGAATGTCTAT 57.006 32.000 0.00 0.00 0.00 1.98
579 585 9.679661 ATTGGTGTTGTTATGTGAATGTCTATA 57.320 29.630 0.00 0.00 0.00 1.31
580 586 9.508642 TTGGTGTTGTTATGTGAATGTCTATAA 57.491 29.630 0.00 0.00 0.00 0.98
581 587 9.679661 TGGTGTTGTTATGTGAATGTCTATAAT 57.320 29.630 0.00 0.00 0.00 1.28
614 620 6.729690 AAACTTGGTCAAAATTGGATGAGA 57.270 33.333 0.00 0.00 0.00 3.27
615 621 6.923199 AACTTGGTCAAAATTGGATGAGAT 57.077 33.333 0.00 0.00 0.00 2.75
616 622 6.923199 ACTTGGTCAAAATTGGATGAGATT 57.077 33.333 0.00 0.00 0.00 2.40
617 623 6.694447 ACTTGGTCAAAATTGGATGAGATTG 58.306 36.000 0.00 0.00 0.00 2.67
618 624 6.494491 ACTTGGTCAAAATTGGATGAGATTGA 59.506 34.615 0.00 0.00 0.00 2.57
619 625 7.179694 ACTTGGTCAAAATTGGATGAGATTGAT 59.820 33.333 0.00 0.00 0.00 2.57
620 626 7.484993 TGGTCAAAATTGGATGAGATTGATT 57.515 32.000 0.00 0.00 0.00 2.57
621 627 7.909518 TGGTCAAAATTGGATGAGATTGATTT 58.090 30.769 0.00 0.00 0.00 2.17
622 628 8.036575 TGGTCAAAATTGGATGAGATTGATTTC 58.963 33.333 0.00 0.00 0.00 2.17
623 629 7.221452 GGTCAAAATTGGATGAGATTGATTTCG 59.779 37.037 0.00 0.00 0.00 3.46
624 630 7.221452 GTCAAAATTGGATGAGATTGATTTCGG 59.779 37.037 0.00 0.00 0.00 4.30
625 631 7.122501 TCAAAATTGGATGAGATTGATTTCGGA 59.877 33.333 0.00 0.00 0.00 4.55
626 632 6.382869 AATTGGATGAGATTGATTTCGGAC 57.617 37.500 0.00 0.00 0.00 4.79
627 633 4.486125 TGGATGAGATTGATTTCGGACA 57.514 40.909 0.00 0.00 0.00 4.02
628 634 4.842574 TGGATGAGATTGATTTCGGACAA 58.157 39.130 0.00 0.00 0.00 3.18
629 635 5.252547 TGGATGAGATTGATTTCGGACAAA 58.747 37.500 0.00 0.00 0.00 2.83
630 636 5.123820 TGGATGAGATTGATTTCGGACAAAC 59.876 40.000 0.00 0.00 0.00 2.93
631 637 5.449177 GGATGAGATTGATTTCGGACAAACC 60.449 44.000 0.00 0.00 0.00 3.27
632 638 4.651778 TGAGATTGATTTCGGACAAACCT 58.348 39.130 0.00 0.00 36.31 3.50
633 639 5.800296 TGAGATTGATTTCGGACAAACCTA 58.200 37.500 0.00 0.00 36.31 3.08
634 640 6.234920 TGAGATTGATTTCGGACAAACCTAA 58.765 36.000 0.00 0.00 36.31 2.69
635 641 6.884295 TGAGATTGATTTCGGACAAACCTAAT 59.116 34.615 0.00 0.00 36.31 1.73
636 642 8.044309 TGAGATTGATTTCGGACAAACCTAATA 58.956 33.333 0.00 0.00 36.31 0.98
637 643 8.980481 AGATTGATTTCGGACAAACCTAATAT 57.020 30.769 0.00 0.00 36.31 1.28
638 644 8.840321 AGATTGATTTCGGACAAACCTAATATG 58.160 33.333 0.00 0.00 36.31 1.78
639 645 6.371809 TGATTTCGGACAAACCTAATATGC 57.628 37.500 0.00 0.00 36.31 3.14
640 646 5.883115 TGATTTCGGACAAACCTAATATGCA 59.117 36.000 0.00 0.00 36.31 3.96
641 647 5.811399 TTTCGGACAAACCTAATATGCAG 57.189 39.130 0.00 0.00 36.31 4.41
642 648 4.746535 TCGGACAAACCTAATATGCAGA 57.253 40.909 0.00 0.00 36.31 4.26
643 649 4.693283 TCGGACAAACCTAATATGCAGAG 58.307 43.478 0.00 0.00 36.31 3.35
644 650 4.161565 TCGGACAAACCTAATATGCAGAGT 59.838 41.667 0.00 0.00 36.31 3.24
645 651 5.361571 TCGGACAAACCTAATATGCAGAGTA 59.638 40.000 0.00 0.00 36.31 2.59
646 652 6.046593 CGGACAAACCTAATATGCAGAGTAA 58.953 40.000 0.00 0.00 36.31 2.24
647 653 6.537301 CGGACAAACCTAATATGCAGAGTAAA 59.463 38.462 0.00 0.00 36.31 2.01
648 654 7.065324 CGGACAAACCTAATATGCAGAGTAAAA 59.935 37.037 0.00 0.00 36.31 1.52
649 655 8.736244 GGACAAACCTAATATGCAGAGTAAAAA 58.264 33.333 0.00 0.00 35.41 1.94
676 682 2.156098 GAGGGAGTATCTACTGGAGCG 58.844 57.143 0.00 0.00 36.50 5.03
679 685 2.573369 GGAGTATCTACTGGAGCGTGA 58.427 52.381 0.00 0.00 36.50 4.35
681 687 4.325119 GGAGTATCTACTGGAGCGTGATA 58.675 47.826 0.00 0.00 36.50 2.15
706 712 1.065851 CATGCATGCGATGTTGCCTAA 59.934 47.619 14.93 0.00 38.08 2.69
813 840 6.336566 ACACTTGCACTGTAGAGATAAGATG 58.663 40.000 0.00 0.61 0.00 2.90
814 841 6.153510 ACACTTGCACTGTAGAGATAAGATGA 59.846 38.462 0.00 0.00 0.00 2.92
815 842 7.147759 ACACTTGCACTGTAGAGATAAGATGAT 60.148 37.037 0.00 0.00 0.00 2.45
816 843 8.355913 CACTTGCACTGTAGAGATAAGATGATA 58.644 37.037 0.00 0.00 0.00 2.15
856 887 0.256752 TGCATGCATACAGGAAGGCT 59.743 50.000 18.46 0.00 0.00 4.58
857 888 1.341285 TGCATGCATACAGGAAGGCTT 60.341 47.619 18.46 0.00 0.00 4.35
858 889 1.753073 GCATGCATACAGGAAGGCTTT 59.247 47.619 14.21 0.00 0.00 3.51
859 890 2.951642 GCATGCATACAGGAAGGCTTTA 59.048 45.455 14.21 0.00 0.00 1.85
918 949 0.625316 AGCCTGCATGTTGACCCATA 59.375 50.000 0.00 0.00 0.00 2.74
938 969 5.048224 CCATAGGTCGATAATACCGTCAAGT 60.048 44.000 0.00 0.00 42.15 3.16
939 970 4.564940 AGGTCGATAATACCGTCAAGTC 57.435 45.455 0.00 0.00 42.15 3.01
940 971 3.003068 AGGTCGATAATACCGTCAAGTCG 59.997 47.826 0.00 0.00 42.15 4.18
941 972 3.242870 GGTCGATAATACCGTCAAGTCGT 60.243 47.826 0.00 0.00 0.00 4.34
942 973 3.964970 GTCGATAATACCGTCAAGTCGTC 59.035 47.826 0.00 0.00 0.00 4.20
943 974 3.622612 TCGATAATACCGTCAAGTCGTCA 59.377 43.478 0.00 0.00 0.00 4.35
944 975 4.094739 TCGATAATACCGTCAAGTCGTCAA 59.905 41.667 0.00 0.00 0.00 3.18
945 976 4.203764 CGATAATACCGTCAAGTCGTCAAC 59.796 45.833 0.00 0.00 0.00 3.18
946 977 2.358939 ATACCGTCAAGTCGTCAACC 57.641 50.000 0.00 0.00 0.00 3.77
1006 1037 3.754965 TGCATTAGCTTCTCACCAAACT 58.245 40.909 0.00 0.00 42.74 2.66
1026 1057 5.384063 ACTAGCTCCGATACAATCTCATG 57.616 43.478 0.00 0.00 0.00 3.07
1035 1066 6.265422 TCCGATACAATCTCATGATACAGTGT 59.735 38.462 0.00 0.00 31.70 3.55
1169 1201 1.404315 GGCCGAAGAAACTCGTGAGAT 60.404 52.381 3.44 0.00 40.84 2.75
1209 1244 9.575783 AGCTAGTTTTGTTACGATTTTTGAAAA 57.424 25.926 0.00 0.00 0.00 2.29
1325 1367 4.151582 CGTGGTTATCCCGGGCGT 62.152 66.667 18.49 9.84 35.15 5.68
1517 1559 3.044305 GTGCACCACTGAGCCGAC 61.044 66.667 5.22 0.00 0.00 4.79
1578 1623 6.363626 CACGTGCCTAGTTAATCTGCTTATAG 59.636 42.308 0.82 0.00 0.00 1.31
1661 1706 3.067461 TGTGTTTATGGTGTGCTTGTTCC 59.933 43.478 0.00 0.00 0.00 3.62
1705 1754 1.597663 GATGTATTGTACTGCACCCGC 59.402 52.381 0.00 0.00 39.24 6.13
1740 1792 7.455641 TGGAATAAAAAGACAGGCGAATTTA 57.544 32.000 0.00 0.00 0.00 1.40
1745 1797 5.864628 AAAAGACAGGCGAATTTACTCTC 57.135 39.130 0.00 0.00 0.00 3.20
1752 1804 2.125685 GCGAATTTACTCTCCTACGCC 58.874 52.381 0.00 0.00 39.13 5.68
1769 1821 1.467374 CGCCGGGCTTTGTTAATCAAG 60.467 52.381 18.34 0.00 37.35 3.02
1821 1876 3.088532 TGCCTTATTTCTGGAATTGCGT 58.911 40.909 0.00 0.00 0.00 5.24
1842 1897 5.531287 GCGTGGAGGGAAAATATAAATCAGT 59.469 40.000 0.00 0.00 0.00 3.41
1844 1899 7.639945 CGTGGAGGGAAAATATAAATCAGTTC 58.360 38.462 0.00 0.00 0.00 3.01
1950 2005 2.909006 ACTTCTCTGCTGATGGAAAGGA 59.091 45.455 0.00 0.00 0.00 3.36
1951 2006 3.055240 ACTTCTCTGCTGATGGAAAGGAG 60.055 47.826 0.00 0.00 34.65 3.69
1976 2031 3.183775 ACGTGCTTGAACGAAGATTGTAC 59.816 43.478 8.26 0.00 46.49 2.90
2018 3884 7.922278 TGCATATTGAAATACCAAAAGATGAGC 59.078 33.333 0.00 0.00 0.00 4.26
2036 3902 5.459536 TGAGCTATACATACTTCAGGCTG 57.540 43.478 8.58 8.58 0.00 4.85
2046 3912 0.543277 CTTCAGGCTGGCCTCATACA 59.457 55.000 15.73 0.00 46.28 2.29
2059 3925 3.561313 GCCTCATACACCCAGAAGGAAAA 60.561 47.826 0.00 0.00 39.89 2.29
2060 3926 4.860022 CCTCATACACCCAGAAGGAAAAT 58.140 43.478 0.00 0.00 39.89 1.82
2119 4031 8.357966 CGACATTTCAATCGTTTTGTTTCATAG 58.642 33.333 1.83 0.00 33.63 2.23
2130 4042 6.309251 CGTTTTGTTTCATAGTTTGGTTGTGT 59.691 34.615 0.00 0.00 0.00 3.72
2269 4181 8.627487 TCGAATTATTGACATTAAAACCATGC 57.373 30.769 0.00 0.00 0.00 4.06
2307 4219 6.062095 AGGAAATCGATAAATCCAAACGGAT 58.938 36.000 20.59 0.00 45.74 4.18
2308 4220 6.204882 AGGAAATCGATAAATCCAAACGGATC 59.795 38.462 20.59 0.00 42.81 3.36
2336 4248 2.159382 ACATGGAGCCTGGTAAAAACG 58.841 47.619 0.00 0.00 0.00 3.60
2337 4249 2.159382 CATGGAGCCTGGTAAAAACGT 58.841 47.619 0.00 0.00 0.00 3.99
2338 4250 1.600023 TGGAGCCTGGTAAAAACGTG 58.400 50.000 0.00 0.00 0.00 4.49
2339 4251 1.134037 TGGAGCCTGGTAAAAACGTGT 60.134 47.619 0.00 0.00 0.00 4.49
2340 4252 1.951602 GGAGCCTGGTAAAAACGTGTT 59.048 47.619 0.00 0.00 0.00 3.32
2341 4253 2.031420 GGAGCCTGGTAAAAACGTGTTC 60.031 50.000 0.00 0.00 0.00 3.18
2342 4254 1.600485 AGCCTGGTAAAAACGTGTTCG 59.400 47.619 0.00 0.00 43.34 3.95
2343 4255 1.922880 GCCTGGTAAAAACGTGTTCGC 60.923 52.381 0.00 0.00 41.18 4.70
2344 4256 1.331138 CCTGGTAAAAACGTGTTCGCA 59.669 47.619 0.00 0.00 41.18 5.10
2345 4257 2.368685 CTGGTAAAAACGTGTTCGCAC 58.631 47.619 0.00 0.00 44.33 5.34
2370 4282 4.824166 CGTCGCCGTGTACCCTCG 62.824 72.222 0.00 0.00 0.00 4.63
2371 4283 3.434319 GTCGCCGTGTACCCTCGA 61.434 66.667 0.00 0.00 0.00 4.04
2372 4284 3.434319 TCGCCGTGTACCCTCGAC 61.434 66.667 0.00 0.00 0.00 4.20
2373 4285 4.487412 CGCCGTGTACCCTCGACC 62.487 72.222 0.00 0.00 0.00 4.79
2374 4286 3.376078 GCCGTGTACCCTCGACCA 61.376 66.667 0.00 0.00 0.00 4.02
2375 4287 2.882876 CCGTGTACCCTCGACCAG 59.117 66.667 0.00 0.00 0.00 4.00
2376 4288 2.707849 CCGTGTACCCTCGACCAGG 61.708 68.421 0.00 0.00 43.01 4.45
2395 4307 4.319133 GCGGAGGCAGGATTTGAA 57.681 55.556 0.00 0.00 39.62 2.69
2396 4308 1.803289 GCGGAGGCAGGATTTGAAC 59.197 57.895 0.00 0.00 39.62 3.18
2397 4309 0.960364 GCGGAGGCAGGATTTGAACA 60.960 55.000 0.00 0.00 39.62 3.18
2398 4310 1.755179 CGGAGGCAGGATTTGAACAT 58.245 50.000 0.00 0.00 0.00 2.71
2399 4311 1.402968 CGGAGGCAGGATTTGAACATG 59.597 52.381 0.00 0.00 0.00 3.21
2400 4312 2.726821 GGAGGCAGGATTTGAACATGA 58.273 47.619 0.00 0.00 0.00 3.07
2401 4313 2.686915 GGAGGCAGGATTTGAACATGAG 59.313 50.000 0.00 0.00 0.00 2.90
2402 4314 2.686915 GAGGCAGGATTTGAACATGAGG 59.313 50.000 0.00 0.00 0.00 3.86
2403 4315 1.753073 GGCAGGATTTGAACATGAGGG 59.247 52.381 0.00 0.00 0.00 4.30
2404 4316 1.753073 GCAGGATTTGAACATGAGGGG 59.247 52.381 0.00 0.00 0.00 4.79
2405 4317 2.381911 CAGGATTTGAACATGAGGGGG 58.618 52.381 0.00 0.00 0.00 5.40
2419 4331 4.337013 GGGGGCGAACATGATTGT 57.663 55.556 0.00 0.00 37.82 2.71
2421 4333 0.173255 GGGGGCGAACATGATTGTTG 59.827 55.000 0.00 0.00 46.01 3.33
2422 4334 1.173043 GGGGCGAACATGATTGTTGA 58.827 50.000 0.00 0.00 46.01 3.18
2423 4335 1.750778 GGGGCGAACATGATTGTTGAT 59.249 47.619 0.00 0.00 46.01 2.57
2424 4336 2.480073 GGGGCGAACATGATTGTTGATG 60.480 50.000 0.00 0.00 46.01 3.07
2425 4337 2.164219 GGGCGAACATGATTGTTGATGT 59.836 45.455 0.00 0.00 46.01 3.06
2426 4338 3.376859 GGGCGAACATGATTGTTGATGTA 59.623 43.478 0.00 0.00 46.01 2.29
2427 4339 4.036734 GGGCGAACATGATTGTTGATGTAT 59.963 41.667 0.00 0.00 46.01 2.29
2428 4340 5.238432 GGGCGAACATGATTGTTGATGTATA 59.762 40.000 0.00 0.00 46.01 1.47
2429 4341 6.238621 GGGCGAACATGATTGTTGATGTATAA 60.239 38.462 0.00 0.00 46.01 0.98
2430 4342 6.852853 GGCGAACATGATTGTTGATGTATAAG 59.147 38.462 0.00 0.00 46.01 1.73
2431 4343 7.254761 GGCGAACATGATTGTTGATGTATAAGA 60.255 37.037 0.00 0.00 46.01 2.10
2432 4344 8.285394 GCGAACATGATTGTTGATGTATAAGAT 58.715 33.333 0.00 0.00 46.01 2.40
2433 4345 9.590088 CGAACATGATTGTTGATGTATAAGATG 57.410 33.333 0.00 0.00 46.01 2.90
2434 4346 9.888878 GAACATGATTGTTGATGTATAAGATGG 57.111 33.333 0.00 0.00 46.01 3.51
2435 4347 9.631257 AACATGATTGTTGATGTATAAGATGGA 57.369 29.630 0.00 0.00 44.36 3.41
2436 4348 9.631257 ACATGATTGTTGATGTATAAGATGGAA 57.369 29.630 0.00 0.00 30.86 3.53
2458 4370 9.936759 TGGAATATCACATTATATTAACGCTCA 57.063 29.630 0.00 0.00 33.24 4.26
2463 4375 8.831715 ATCACATTATATTAACGCTCATGACA 57.168 30.769 0.00 0.00 0.00 3.58
2464 4376 8.298030 TCACATTATATTAACGCTCATGACAG 57.702 34.615 0.00 0.00 0.00 3.51
2465 4377 7.384932 TCACATTATATTAACGCTCATGACAGG 59.615 37.037 0.00 0.00 0.00 4.00
2466 4378 6.650807 ACATTATATTAACGCTCATGACAGGG 59.349 38.462 0.00 0.00 0.00 4.45
2467 4379 1.668419 ATTAACGCTCATGACAGGGC 58.332 50.000 0.00 0.00 0.00 5.19
2472 4384 4.147449 CTCATGACAGGGCGCCGA 62.147 66.667 22.54 9.19 0.00 5.54
2473 4385 3.451556 CTCATGACAGGGCGCCGAT 62.452 63.158 22.54 8.99 0.00 4.18
2474 4386 2.087462 CTCATGACAGGGCGCCGATA 62.087 60.000 22.54 5.05 0.00 2.92
2475 4387 1.227527 CATGACAGGGCGCCGATAA 60.228 57.895 22.54 5.00 0.00 1.75
2476 4388 0.813610 CATGACAGGGCGCCGATAAA 60.814 55.000 22.54 6.25 0.00 1.40
2477 4389 0.532862 ATGACAGGGCGCCGATAAAG 60.533 55.000 22.54 8.58 0.00 1.85
2478 4390 2.513897 ACAGGGCGCCGATAAAGC 60.514 61.111 22.54 4.09 0.00 3.51
2479 4391 2.513666 CAGGGCGCCGATAAAGCA 60.514 61.111 22.54 0.00 0.00 3.91
2480 4392 1.893808 CAGGGCGCCGATAAAGCAT 60.894 57.895 22.54 0.00 0.00 3.79
2481 4393 0.602638 CAGGGCGCCGATAAAGCATA 60.603 55.000 22.54 0.00 0.00 3.14
2482 4394 0.107831 AGGGCGCCGATAAAGCATAA 59.892 50.000 22.54 0.00 0.00 1.90
2483 4395 0.948678 GGGCGCCGATAAAGCATAAA 59.051 50.000 22.54 0.00 0.00 1.40
2484 4396 1.335496 GGGCGCCGATAAAGCATAAAA 59.665 47.619 22.54 0.00 0.00 1.52
2485 4397 2.030274 GGGCGCCGATAAAGCATAAAAT 60.030 45.455 22.54 0.00 0.00 1.82
2486 4398 3.552068 GGGCGCCGATAAAGCATAAAATT 60.552 43.478 22.54 0.00 0.00 1.82
2487 4399 4.320641 GGGCGCCGATAAAGCATAAAATTA 60.321 41.667 22.54 0.00 0.00 1.40
2488 4400 5.399013 GGCGCCGATAAAGCATAAAATTAT 58.601 37.500 12.58 0.00 0.00 1.28
2489 4401 5.286082 GGCGCCGATAAAGCATAAAATTATG 59.714 40.000 12.58 8.48 42.61 1.90
2490 4402 5.286082 GCGCCGATAAAGCATAAAATTATGG 59.714 40.000 13.47 0.00 40.61 2.74
2532 4444 8.770010 TGGTATTTACCCCATTAATTAGTTGG 57.230 34.615 4.35 8.78 45.87 3.77
2533 4445 8.345306 TGGTATTTACCCCATTAATTAGTTGGT 58.655 33.333 12.86 8.98 45.87 3.67
2534 4446 9.865152 GGTATTTACCCCATTAATTAGTTGGTA 57.135 33.333 12.86 8.23 40.53 3.25
2553 4465 9.886132 AGTTGGTATTATCTTTTACTTCGTCAT 57.114 29.630 0.00 0.00 0.00 3.06
2554 4466 9.916397 GTTGGTATTATCTTTTACTTCGTCATG 57.084 33.333 0.00 0.00 0.00 3.07
2555 4467 9.878667 TTGGTATTATCTTTTACTTCGTCATGA 57.121 29.630 0.00 0.00 0.00 3.07
2556 4468 9.878667 TGGTATTATCTTTTACTTCGTCATGAA 57.121 29.630 0.00 0.00 34.74 2.57
2563 4475 8.961294 TCTTTTACTTCGTCATGAACTAGTAC 57.039 34.615 0.00 0.00 31.87 2.73
2564 4476 8.790718 TCTTTTACTTCGTCATGAACTAGTACT 58.209 33.333 0.00 0.00 31.87 2.73
2632 4544 9.784531 ATGAAACCTGTATCATGTAGATTAAGG 57.215 33.333 0.00 0.00 40.96 2.69
2633 4545 8.768397 TGAAACCTGTATCATGTAGATTAAGGT 58.232 33.333 0.00 0.00 45.81 3.50
2634 4546 9.262358 GAAACCTGTATCATGTAGATTAAGGTC 57.738 37.037 10.13 0.12 44.38 3.85
2635 4547 7.914427 ACCTGTATCATGTAGATTAAGGTCA 57.086 36.000 0.00 0.00 42.91 4.02
2636 4548 8.497910 ACCTGTATCATGTAGATTAAGGTCAT 57.502 34.615 0.00 0.00 42.91 3.06
2637 4549 9.601810 ACCTGTATCATGTAGATTAAGGTCATA 57.398 33.333 0.00 0.00 42.91 2.15
2671 4583 9.947433 TTAAAAATCTACTCCTATTTGTTCCGA 57.053 29.630 0.00 0.00 0.00 4.55
2672 4584 8.857694 AAAAATCTACTCCTATTTGTTCCGAA 57.142 30.769 0.00 0.00 0.00 4.30
2673 4585 8.857694 AAAATCTACTCCTATTTGTTCCGAAA 57.142 30.769 0.00 0.00 0.00 3.46
2674 4586 9.462606 AAAATCTACTCCTATTTGTTCCGAAAT 57.537 29.630 0.00 0.00 0.00 2.17
2677 4589 8.937634 TCTACTCCTATTTGTTCCGAAATAAC 57.062 34.615 0.00 0.00 29.45 1.89
2678 4590 8.755977 TCTACTCCTATTTGTTCCGAAATAACT 58.244 33.333 0.00 0.00 29.45 2.24
2679 4591 7.611213 ACTCCTATTTGTTCCGAAATAACTG 57.389 36.000 0.00 0.00 29.45 3.16
2680 4592 7.391620 ACTCCTATTTGTTCCGAAATAACTGA 58.608 34.615 0.00 0.00 29.45 3.41
2681 4593 7.881232 ACTCCTATTTGTTCCGAAATAACTGAA 59.119 33.333 0.00 0.00 29.45 3.02
2682 4594 8.801882 TCCTATTTGTTCCGAAATAACTGAAT 57.198 30.769 0.00 0.00 29.45 2.57
2683 4595 9.238368 TCCTATTTGTTCCGAAATAACTGAATT 57.762 29.630 0.00 0.00 29.45 2.17
2684 4596 9.855021 CCTATTTGTTCCGAAATAACTGAATTT 57.145 29.630 0.00 0.00 29.45 1.82
2688 4600 9.685828 TTTGTTCCGAAATAACTGAATTTTAGG 57.314 29.630 0.00 0.00 32.63 2.69
2689 4601 7.309920 TGTTCCGAAATAACTGAATTTTAGGC 58.690 34.615 0.00 0.00 32.01 3.93
2690 4602 7.175990 TGTTCCGAAATAACTGAATTTTAGGCT 59.824 33.333 0.00 0.00 32.01 4.58
2691 4603 7.696992 TCCGAAATAACTGAATTTTAGGCTT 57.303 32.000 0.00 0.00 32.01 4.35
2692 4604 8.117813 TCCGAAATAACTGAATTTTAGGCTTT 57.882 30.769 0.00 0.00 32.01 3.51
2693 4605 8.581578 TCCGAAATAACTGAATTTTAGGCTTTT 58.418 29.630 0.00 0.00 32.01 2.27
2694 4606 8.860128 CCGAAATAACTGAATTTTAGGCTTTTC 58.140 33.333 0.00 0.00 0.00 2.29
2695 4607 9.405587 CGAAATAACTGAATTTTAGGCTTTTCA 57.594 29.630 0.00 0.00 0.00 2.69
2701 4613 9.914131 AACTGAATTTTAGGCTTTTCATAAGTC 57.086 29.630 0.00 0.00 0.00 3.01
2702 4614 9.077885 ACTGAATTTTAGGCTTTTCATAAGTCA 57.922 29.630 0.00 0.00 0.00 3.41
2703 4615 9.912634 CTGAATTTTAGGCTTTTCATAAGTCAA 57.087 29.630 0.00 0.00 0.00 3.18
2708 4620 9.744468 TTTTAGGCTTTTCATAAGTCAAACTTC 57.256 29.630 0.00 0.00 39.51 3.01
2709 4621 8.691661 TTAGGCTTTTCATAAGTCAAACTTCT 57.308 30.769 0.00 0.00 39.51 2.85
2710 4622 7.588497 AGGCTTTTCATAAGTCAAACTTCTT 57.412 32.000 0.00 0.00 39.51 2.52
2711 4623 7.652727 AGGCTTTTCATAAGTCAAACTTCTTC 58.347 34.615 0.00 0.00 39.51 2.87
2712 4624 7.285401 AGGCTTTTCATAAGTCAAACTTCTTCA 59.715 33.333 0.00 0.00 39.51 3.02
2713 4625 7.920682 GGCTTTTCATAAGTCAAACTTCTTCAA 59.079 33.333 0.00 0.00 39.51 2.69
2714 4626 9.301153 GCTTTTCATAAGTCAAACTTCTTCAAA 57.699 29.630 0.00 0.00 39.51 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.941483 CCCCGCATATTTAGCCAGATTAG 59.059 47.826 0.00 0.00 0.00 1.73
9 10 0.548989 ACACCCCGCATATTTAGCCA 59.451 50.000 0.00 0.00 0.00 4.75
16 17 0.397941 CCATCTCACACCCCGCATAT 59.602 55.000 0.00 0.00 0.00 1.78
17 18 1.695114 CCCATCTCACACCCCGCATA 61.695 60.000 0.00 0.00 0.00 3.14
18 19 2.591753 CCATCTCACACCCCGCAT 59.408 61.111 0.00 0.00 0.00 4.73
25 26 2.787473 TTCATCCACCCATCTCACAC 57.213 50.000 0.00 0.00 0.00 3.82
30 31 3.372440 GGTTCTTTCATCCACCCATCT 57.628 47.619 0.00 0.00 0.00 2.90
56 57 6.206498 GGTTACAAGAAGCGAAACAATTTCT 58.794 36.000 0.00 0.00 37.52 2.52
58 59 5.163499 TGGGTTACAAGAAGCGAAACAATTT 60.163 36.000 0.00 0.00 0.00 1.82
68 69 3.375299 CAGTAGCATGGGTTACAAGAAGC 59.625 47.826 0.00 0.00 33.58 3.86
201 207 2.834549 GTCACATCCTTCTTCCTCCTCA 59.165 50.000 0.00 0.00 0.00 3.86
237 243 7.013369 TGACACGTAGCTATCTCAGTTGATAAT 59.987 37.037 0.00 0.00 0.00 1.28
264 270 0.179012 ACGTGGTTTTGGACGGGAAT 60.179 50.000 0.00 0.00 39.94 3.01
269 275 0.941542 ATGTGACGTGGTTTTGGACG 59.058 50.000 0.00 0.00 41.41 4.79
273 279 3.894782 TGATGATGTGACGTGGTTTTG 57.105 42.857 0.00 0.00 0.00 2.44
308 314 5.340439 TTTATCGAGTTTTCTCCCTCTCC 57.660 43.478 0.00 0.00 43.49 3.71
318 324 9.057089 ACTCTTGAAGTCATTTTATCGAGTTTT 57.943 29.630 0.00 0.00 30.02 2.43
320 326 7.872993 TCACTCTTGAAGTCATTTTATCGAGTT 59.127 33.333 0.00 0.00 35.45 3.01
322 328 7.009999 CCTCACTCTTGAAGTCATTTTATCGAG 59.990 40.741 0.00 0.00 35.45 4.04
323 329 6.813649 CCTCACTCTTGAAGTCATTTTATCGA 59.186 38.462 0.00 0.00 35.45 3.59
324 330 6.813649 TCCTCACTCTTGAAGTCATTTTATCG 59.186 38.462 0.00 0.00 35.45 2.92
325 331 7.279758 CCTCCTCACTCTTGAAGTCATTTTATC 59.720 40.741 0.00 0.00 35.45 1.75
327 333 6.467677 CCTCCTCACTCTTGAAGTCATTTTA 58.532 40.000 0.00 0.00 35.45 1.52
328 334 5.312079 CCTCCTCACTCTTGAAGTCATTTT 58.688 41.667 0.00 0.00 35.45 1.82
330 336 3.262915 CCCTCCTCACTCTTGAAGTCATT 59.737 47.826 0.00 0.00 35.45 2.57
331 337 2.836981 CCCTCCTCACTCTTGAAGTCAT 59.163 50.000 0.00 0.00 35.45 3.06
332 338 2.251818 CCCTCCTCACTCTTGAAGTCA 58.748 52.381 0.00 0.00 35.45 3.41
333 339 1.552792 CCCCTCCTCACTCTTGAAGTC 59.447 57.143 0.00 0.00 35.45 3.01
334 340 1.132689 ACCCCTCCTCACTCTTGAAGT 60.133 52.381 0.00 0.00 39.44 3.01
336 342 1.150135 AGACCCCTCCTCACTCTTGAA 59.850 52.381 0.00 0.00 0.00 2.69
338 344 1.650528 AAGACCCCTCCTCACTCTTG 58.349 55.000 0.00 0.00 0.00 3.02
339 345 3.562108 TTAAGACCCCTCCTCACTCTT 57.438 47.619 0.00 0.00 0.00 2.85
340 346 3.181405 ACTTTAAGACCCCTCCTCACTCT 60.181 47.826 0.00 0.00 0.00 3.24
341 347 3.174779 ACTTTAAGACCCCTCCTCACTC 58.825 50.000 0.00 0.00 0.00 3.51
342 348 3.277416 ACTTTAAGACCCCTCCTCACT 57.723 47.619 0.00 0.00 0.00 3.41
345 351 3.055021 CCTCAACTTTAAGACCCCTCCTC 60.055 52.174 0.00 0.00 0.00 3.71
346 352 2.913617 CCTCAACTTTAAGACCCCTCCT 59.086 50.000 0.00 0.00 0.00 3.69
347 353 2.026169 CCCTCAACTTTAAGACCCCTCC 60.026 54.545 0.00 0.00 0.00 4.30
348 354 2.910977 TCCCTCAACTTTAAGACCCCTC 59.089 50.000 0.00 0.00 0.00 4.30
349 355 2.643304 GTCCCTCAACTTTAAGACCCCT 59.357 50.000 0.00 0.00 0.00 4.79
350 356 2.290768 GGTCCCTCAACTTTAAGACCCC 60.291 54.545 0.00 0.00 38.25 4.95
351 357 2.374170 TGGTCCCTCAACTTTAAGACCC 59.626 50.000 0.00 0.00 42.53 4.46
352 358 3.782656 TGGTCCCTCAACTTTAAGACC 57.217 47.619 0.00 0.00 43.31 3.85
353 359 5.358725 TGTTTTGGTCCCTCAACTTTAAGAC 59.641 40.000 0.00 0.00 0.00 3.01
354 360 5.511363 TGTTTTGGTCCCTCAACTTTAAGA 58.489 37.500 0.00 0.00 0.00 2.10
407 413 2.105134 TGCAGAGTAAAAAGGACCGGAA 59.895 45.455 9.46 0.00 0.00 4.30
408 414 1.695242 TGCAGAGTAAAAAGGACCGGA 59.305 47.619 9.46 0.00 0.00 5.14
410 416 6.984474 TCTAATATGCAGAGTAAAAAGGACCG 59.016 38.462 0.00 0.00 0.00 4.79
414 420 9.455847 GCAAATCTAATATGCAGAGTAAAAAGG 57.544 33.333 0.00 0.00 39.81 3.11
416 422 8.128582 CGGCAAATCTAATATGCAGAGTAAAAA 58.871 33.333 0.00 0.00 41.80 1.94
418 424 6.989759 TCGGCAAATCTAATATGCAGAGTAAA 59.010 34.615 0.00 0.00 38.92 2.01
419 425 6.521162 TCGGCAAATCTAATATGCAGAGTAA 58.479 36.000 0.00 0.00 38.92 2.24
420 426 6.096673 TCGGCAAATCTAATATGCAGAGTA 57.903 37.500 0.00 0.00 38.92 2.59
421 427 4.960938 TCGGCAAATCTAATATGCAGAGT 58.039 39.130 0.00 0.00 38.92 3.24
422 428 5.929697 TTCGGCAAATCTAATATGCAGAG 57.070 39.130 0.00 0.00 43.26 3.35
423 429 5.822519 ACTTTCGGCAAATCTAATATGCAGA 59.177 36.000 0.00 0.00 41.37 4.26
426 432 6.060028 TGACTTTCGGCAAATCTAATATGC 57.940 37.500 0.00 0.00 39.33 3.14
427 433 8.184192 AGTTTGACTTTCGGCAAATCTAATATG 58.816 33.333 0.00 0.00 36.51 1.78
428 434 8.281212 AGTTTGACTTTCGGCAAATCTAATAT 57.719 30.769 0.00 0.00 36.51 1.28
429 435 7.681939 AGTTTGACTTTCGGCAAATCTAATA 57.318 32.000 0.00 0.00 36.51 0.98
430 436 6.575162 AGTTTGACTTTCGGCAAATCTAAT 57.425 33.333 0.00 0.00 36.51 1.73
431 437 6.385649 AAGTTTGACTTTCGGCAAATCTAA 57.614 33.333 0.00 0.00 34.11 2.10
432 438 6.205784 CAAAGTTTGACTTTCGGCAAATCTA 58.794 36.000 10.19 0.00 44.47 1.98
434 440 4.318050 GCAAAGTTTGACTTTCGGCAAATC 60.318 41.667 19.82 0.00 44.47 2.17
435 441 3.555547 GCAAAGTTTGACTTTCGGCAAAT 59.444 39.130 19.82 0.00 44.47 2.32
436 442 2.926838 GCAAAGTTTGACTTTCGGCAAA 59.073 40.909 19.82 0.00 44.47 3.68
437 443 2.165437 AGCAAAGTTTGACTTTCGGCAA 59.835 40.909 19.82 0.00 44.47 4.52
438 444 1.748493 AGCAAAGTTTGACTTTCGGCA 59.252 42.857 19.82 0.00 44.47 5.69
547 553 9.806203 CATTCACATAACAACACCAATATCATT 57.194 29.630 0.00 0.00 0.00 2.57
548 554 8.970020 ACATTCACATAACAACACCAATATCAT 58.030 29.630 0.00 0.00 0.00 2.45
549 555 8.347004 ACATTCACATAACAACACCAATATCA 57.653 30.769 0.00 0.00 0.00 2.15
550 556 8.677300 AGACATTCACATAACAACACCAATATC 58.323 33.333 0.00 0.00 0.00 1.63
551 557 8.579850 AGACATTCACATAACAACACCAATAT 57.420 30.769 0.00 0.00 0.00 1.28
552 558 7.994425 AGACATTCACATAACAACACCAATA 57.006 32.000 0.00 0.00 0.00 1.90
553 559 6.899393 AGACATTCACATAACAACACCAAT 57.101 33.333 0.00 0.00 0.00 3.16
554 560 7.994425 ATAGACATTCACATAACAACACCAA 57.006 32.000 0.00 0.00 0.00 3.67
555 561 9.679661 ATTATAGACATTCACATAACAACACCA 57.320 29.630 0.00 0.00 0.00 4.17
588 594 9.527157 TCTCATCCAATTTTGACCAAGTTTATA 57.473 29.630 0.00 0.00 0.00 0.98
589 595 8.421249 TCTCATCCAATTTTGACCAAGTTTAT 57.579 30.769 0.00 0.00 0.00 1.40
590 596 7.831691 TCTCATCCAATTTTGACCAAGTTTA 57.168 32.000 0.00 0.00 0.00 2.01
591 597 6.729690 TCTCATCCAATTTTGACCAAGTTT 57.270 33.333 0.00 0.00 0.00 2.66
592 598 6.923199 ATCTCATCCAATTTTGACCAAGTT 57.077 33.333 0.00 0.00 0.00 2.66
593 599 6.494491 TCAATCTCATCCAATTTTGACCAAGT 59.506 34.615 0.00 0.00 0.00 3.16
594 600 6.927416 TCAATCTCATCCAATTTTGACCAAG 58.073 36.000 0.00 0.00 0.00 3.61
595 601 6.914654 TCAATCTCATCCAATTTTGACCAA 57.085 33.333 0.00 0.00 0.00 3.67
596 602 7.484993 AATCAATCTCATCCAATTTTGACCA 57.515 32.000 0.00 0.00 0.00 4.02
597 603 7.221452 CGAAATCAATCTCATCCAATTTTGACC 59.779 37.037 0.00 0.00 0.00 4.02
598 604 7.221452 CCGAAATCAATCTCATCCAATTTTGAC 59.779 37.037 0.00 0.00 0.00 3.18
599 605 7.122501 TCCGAAATCAATCTCATCCAATTTTGA 59.877 33.333 0.00 0.00 0.00 2.69
600 606 7.221452 GTCCGAAATCAATCTCATCCAATTTTG 59.779 37.037 0.00 0.00 0.00 2.44
601 607 7.093814 TGTCCGAAATCAATCTCATCCAATTTT 60.094 33.333 0.00 0.00 0.00 1.82
602 608 6.377996 TGTCCGAAATCAATCTCATCCAATTT 59.622 34.615 0.00 0.00 0.00 1.82
603 609 5.887598 TGTCCGAAATCAATCTCATCCAATT 59.112 36.000 0.00 0.00 0.00 2.32
604 610 5.439721 TGTCCGAAATCAATCTCATCCAAT 58.560 37.500 0.00 0.00 0.00 3.16
605 611 4.842574 TGTCCGAAATCAATCTCATCCAA 58.157 39.130 0.00 0.00 0.00 3.53
606 612 4.486125 TGTCCGAAATCAATCTCATCCA 57.514 40.909 0.00 0.00 0.00 3.41
607 613 5.449177 GGTTTGTCCGAAATCAATCTCATCC 60.449 44.000 0.00 0.00 0.00 3.51
608 614 5.355350 AGGTTTGTCCGAAATCAATCTCATC 59.645 40.000 0.00 0.00 41.99 2.92
609 615 5.256474 AGGTTTGTCCGAAATCAATCTCAT 58.744 37.500 0.00 0.00 41.99 2.90
610 616 4.651778 AGGTTTGTCCGAAATCAATCTCA 58.348 39.130 0.00 0.00 41.99 3.27
611 617 6.737254 TTAGGTTTGTCCGAAATCAATCTC 57.263 37.500 0.00 0.00 41.99 2.75
612 618 8.840321 CATATTAGGTTTGTCCGAAATCAATCT 58.160 33.333 0.00 0.00 41.99 2.40
613 619 7.591426 GCATATTAGGTTTGTCCGAAATCAATC 59.409 37.037 0.00 0.00 41.99 2.67
614 620 7.068103 TGCATATTAGGTTTGTCCGAAATCAAT 59.932 33.333 0.00 0.00 41.99 2.57
615 621 6.375736 TGCATATTAGGTTTGTCCGAAATCAA 59.624 34.615 0.00 0.00 41.99 2.57
616 622 5.883115 TGCATATTAGGTTTGTCCGAAATCA 59.117 36.000 0.00 0.00 41.99 2.57
617 623 6.260050 TCTGCATATTAGGTTTGTCCGAAATC 59.740 38.462 0.00 0.00 41.99 2.17
618 624 6.119536 TCTGCATATTAGGTTTGTCCGAAAT 58.880 36.000 0.00 0.00 41.99 2.17
619 625 5.492895 TCTGCATATTAGGTTTGTCCGAAA 58.507 37.500 0.00 0.00 41.99 3.46
620 626 5.092554 TCTGCATATTAGGTTTGTCCGAA 57.907 39.130 0.00 0.00 41.99 4.30
621 627 4.161565 ACTCTGCATATTAGGTTTGTCCGA 59.838 41.667 0.00 0.00 41.99 4.55
622 628 4.442706 ACTCTGCATATTAGGTTTGTCCG 58.557 43.478 0.00 0.00 41.99 4.79
623 629 7.859325 TTTACTCTGCATATTAGGTTTGTCC 57.141 36.000 0.00 0.00 0.00 4.02
646 652 6.155393 CAGTAGATACTCCCTCCAGTCTTTTT 59.845 42.308 0.00 0.00 33.46 1.94
647 653 5.659079 CAGTAGATACTCCCTCCAGTCTTTT 59.341 44.000 0.00 0.00 33.46 2.27
648 654 5.205056 CAGTAGATACTCCCTCCAGTCTTT 58.795 45.833 0.00 0.00 33.46 2.52
649 655 4.386986 CCAGTAGATACTCCCTCCAGTCTT 60.387 50.000 0.00 0.00 33.46 3.01
650 656 3.139397 CCAGTAGATACTCCCTCCAGTCT 59.861 52.174 0.00 0.00 33.46 3.24
651 657 3.138653 TCCAGTAGATACTCCCTCCAGTC 59.861 52.174 0.00 0.00 33.46 3.51
652 658 3.132056 TCCAGTAGATACTCCCTCCAGT 58.868 50.000 0.00 0.00 33.46 4.00
653 659 3.761897 CTCCAGTAGATACTCCCTCCAG 58.238 54.545 0.00 0.00 33.46 3.86
654 660 2.158445 GCTCCAGTAGATACTCCCTCCA 60.158 54.545 0.00 0.00 33.46 3.86
655 661 2.521126 GCTCCAGTAGATACTCCCTCC 58.479 57.143 0.00 0.00 33.46 4.30
656 662 2.156098 CGCTCCAGTAGATACTCCCTC 58.844 57.143 0.00 0.00 33.46 4.30
657 663 1.495574 ACGCTCCAGTAGATACTCCCT 59.504 52.381 0.00 0.00 33.46 4.20
658 664 1.609555 CACGCTCCAGTAGATACTCCC 59.390 57.143 0.00 0.00 33.46 4.30
659 665 2.573369 TCACGCTCCAGTAGATACTCC 58.427 52.381 0.00 0.00 33.46 3.85
660 666 5.470777 ACTTATCACGCTCCAGTAGATACTC 59.529 44.000 0.00 0.00 33.46 2.59
661 667 5.378332 ACTTATCACGCTCCAGTAGATACT 58.622 41.667 0.00 0.00 36.90 2.12
662 668 5.692613 ACTTATCACGCTCCAGTAGATAC 57.307 43.478 0.00 0.00 0.00 2.24
663 669 5.826208 TGAACTTATCACGCTCCAGTAGATA 59.174 40.000 0.00 0.00 31.50 1.98
664 670 4.645136 TGAACTTATCACGCTCCAGTAGAT 59.355 41.667 0.00 0.00 31.50 1.98
665 671 4.014406 TGAACTTATCACGCTCCAGTAGA 58.986 43.478 0.00 0.00 31.50 2.59
666 672 4.371855 TGAACTTATCACGCTCCAGTAG 57.628 45.455 0.00 0.00 31.50 2.57
676 682 3.950087 TCGCATGCATGAACTTATCAC 57.050 42.857 30.64 7.93 41.93 3.06
679 685 4.603985 CAACATCGCATGCATGAACTTAT 58.396 39.130 30.64 11.63 0.00 1.73
681 687 2.871133 CAACATCGCATGCATGAACTT 58.129 42.857 30.64 9.87 0.00 2.66
706 712 2.758009 GTTGTGCATGCCAAGTTTGAT 58.242 42.857 16.68 0.00 0.00 2.57
747 762 1.022982 CAGGAGACATGCATGTGCGT 61.023 55.000 35.92 23.83 45.83 5.24
813 840 2.728368 GCAAGAGCTCTGCGTTTATC 57.272 50.000 19.06 0.00 37.91 1.75
836 863 0.383231 GCCTTCCTGTATGCATGCAC 59.617 55.000 25.37 12.32 0.00 4.57
846 873 5.452356 GCATGCATTAATAAAGCCTTCCTGT 60.452 40.000 14.21 0.00 0.00 4.00
856 887 4.022416 GGATGGACGGCATGCATTAATAAA 60.022 41.667 21.36 0.00 39.93 1.40
857 888 3.505680 GGATGGACGGCATGCATTAATAA 59.494 43.478 21.36 0.00 39.93 1.40
858 889 3.081061 GGATGGACGGCATGCATTAATA 58.919 45.455 21.36 0.89 39.93 0.98
859 890 1.888512 GGATGGACGGCATGCATTAAT 59.111 47.619 21.36 5.92 39.93 1.40
918 949 3.003068 CGACTTGACGGTATTATCGACCT 59.997 47.826 2.82 0.00 34.56 3.85
930 961 0.599558 TAGGGTTGACGACTTGACGG 59.400 55.000 0.00 0.00 37.61 4.79
945 976 1.872773 AGGCAGAGAAACCTCTAGGG 58.127 55.000 0.20 0.00 38.90 3.53
946 977 6.732896 TTTATAGGCAGAGAAACCTCTAGG 57.267 41.667 0.00 0.00 38.90 3.02
1006 1037 6.659242 TGTATCATGAGATTGTATCGGAGCTA 59.341 38.462 0.09 0.00 35.67 3.32
1026 1057 5.696822 TGTGTCTTAGTCGAACACTGTATC 58.303 41.667 16.04 0.00 36.43 2.24
1035 1066 3.754955 CACGCTATGTGTCTTAGTCGAA 58.245 45.455 0.00 0.00 43.88 3.71
1169 1201 2.747177 ACTAGCTAGTGGTGCATGGTA 58.253 47.619 25.52 0.00 34.72 3.25
1209 1244 6.487331 TCAACCCATAACACTGTAAAATTCGT 59.513 34.615 0.00 0.00 0.00 3.85
1325 1367 4.051167 TACCCTCCTCCGCGACCA 62.051 66.667 8.23 0.00 0.00 4.02
1661 1706 3.093717 ACACTGACCAGTACGTCTTTG 57.906 47.619 1.95 0.00 40.20 2.77
1705 1754 8.789881 TGTCTTTTTATTCCATAAACACAACG 57.210 30.769 0.00 0.00 34.68 4.10
1740 1792 3.959329 AAGCCCGGCGTAGGAGAGT 62.959 63.158 6.01 0.00 0.00 3.24
1745 1797 0.674269 TTAACAAAGCCCGGCGTAGG 60.674 55.000 6.01 1.16 0.00 3.18
1752 1804 4.438744 GGATGACTTGATTAACAAAGCCCG 60.439 45.833 0.02 0.00 38.08 6.13
1821 1876 7.066781 GGGAACTGATTTATATTTTCCCTCCA 58.933 38.462 9.54 0.00 46.03 3.86
1842 1897 3.197116 GGAGGACGACTCTTATTTGGGAA 59.803 47.826 10.70 0.00 45.83 3.97
1844 1899 3.180891 GGAGGACGACTCTTATTTGGG 57.819 52.381 10.70 0.00 45.83 4.12
1950 2005 1.202486 TCTTCGTTCAAGCACGTTCCT 60.202 47.619 0.00 0.00 41.16 3.36
1951 2006 1.214367 TCTTCGTTCAAGCACGTTCC 58.786 50.000 0.00 0.00 41.16 3.62
2018 3884 3.580458 AGGCCAGCCTGAAGTATGTATAG 59.420 47.826 11.21 0.00 46.22 1.31
2020 3886 2.412591 AGGCCAGCCTGAAGTATGTAT 58.587 47.619 11.21 0.00 46.22 2.29
2021 3887 1.879575 AGGCCAGCCTGAAGTATGTA 58.120 50.000 11.21 0.00 46.22 2.29
2022 3888 2.702093 AGGCCAGCCTGAAGTATGT 58.298 52.632 11.21 0.00 46.22 2.29
2036 3902 0.181350 CCTTCTGGGTGTATGAGGCC 59.819 60.000 0.00 0.00 0.00 5.19
2046 3912 9.547279 AAATCTGTAATAATTTTCCTTCTGGGT 57.453 29.630 0.00 0.00 36.25 4.51
2119 4031 9.092876 TCAATTCAAGAAATTACACAACCAAAC 57.907 29.630 0.00 0.00 35.77 2.93
2130 4042 8.093659 TCATGACGTGTCAATTCAAGAAATTA 57.906 30.769 6.80 0.00 43.58 1.40
2213 4125 5.043248 ACGAATGAAAGCTTGAAAACCTTG 58.957 37.500 0.00 0.00 0.00 3.61
2249 4161 7.038729 TCCTTGGCATGGTTTTAATGTCAATAA 60.039 33.333 17.94 0.00 45.69 1.40
2269 4181 4.122776 CGATTTCCTATGTGTCTCCTTGG 58.877 47.826 0.00 0.00 0.00 3.61
2307 4219 0.621571 AGGCTCCATGTAAGCTGGGA 60.622 55.000 14.78 0.00 39.75 4.37
2308 4220 0.465097 CAGGCTCCATGTAAGCTGGG 60.465 60.000 14.78 4.11 39.75 4.45
2354 4266 3.434319 TCGAGGGTACACGGCGAC 61.434 66.667 16.62 0.00 0.00 5.19
2355 4267 3.434319 GTCGAGGGTACACGGCGA 61.434 66.667 16.62 11.27 0.00 5.54
2356 4268 4.487412 GGTCGAGGGTACACGGCG 62.487 72.222 4.80 4.80 35.50 6.46
2357 4269 3.352338 CTGGTCGAGGGTACACGGC 62.352 68.421 0.00 0.00 34.18 5.68
2358 4270 2.707849 CCTGGTCGAGGGTACACGG 61.708 68.421 0.00 0.00 38.36 4.94
2359 4271 2.882876 CCTGGTCGAGGGTACACG 59.117 66.667 0.00 0.00 38.36 4.49
2375 4287 4.129148 AAATCCTGCCTCCGCCCC 62.129 66.667 0.00 0.00 0.00 5.80
2376 4288 2.830370 CAAATCCTGCCTCCGCCC 60.830 66.667 0.00 0.00 0.00 6.13
2377 4289 1.378514 TTCAAATCCTGCCTCCGCC 60.379 57.895 0.00 0.00 0.00 6.13
2378 4290 0.960364 TGTTCAAATCCTGCCTCCGC 60.960 55.000 0.00 0.00 0.00 5.54
2379 4291 1.402968 CATGTTCAAATCCTGCCTCCG 59.597 52.381 0.00 0.00 0.00 4.63
2380 4292 2.686915 CTCATGTTCAAATCCTGCCTCC 59.313 50.000 0.00 0.00 0.00 4.30
2381 4293 2.686915 CCTCATGTTCAAATCCTGCCTC 59.313 50.000 0.00 0.00 0.00 4.70
2382 4294 2.622452 CCCTCATGTTCAAATCCTGCCT 60.622 50.000 0.00 0.00 0.00 4.75
2383 4295 1.753073 CCCTCATGTTCAAATCCTGCC 59.247 52.381 0.00 0.00 0.00 4.85
2384 4296 1.753073 CCCCTCATGTTCAAATCCTGC 59.247 52.381 0.00 0.00 0.00 4.85
2385 4297 2.381911 CCCCCTCATGTTCAAATCCTG 58.618 52.381 0.00 0.00 0.00 3.86
2386 4298 2.834638 CCCCCTCATGTTCAAATCCT 57.165 50.000 0.00 0.00 0.00 3.24
2402 4314 0.173255 CAACAATCATGTTCGCCCCC 59.827 55.000 0.00 0.00 46.78 5.40
2403 4315 1.173043 TCAACAATCATGTTCGCCCC 58.827 50.000 0.00 0.00 46.78 5.80
2404 4316 2.164219 ACATCAACAATCATGTTCGCCC 59.836 45.455 0.00 0.00 46.78 6.13
2405 4317 3.492421 ACATCAACAATCATGTTCGCC 57.508 42.857 0.00 0.00 46.78 5.54
2406 4318 7.630026 TCTTATACATCAACAATCATGTTCGC 58.370 34.615 0.00 0.00 46.78 4.70
2407 4319 9.590088 CATCTTATACATCAACAATCATGTTCG 57.410 33.333 0.00 0.00 46.78 3.95
2408 4320 9.888878 CCATCTTATACATCAACAATCATGTTC 57.111 33.333 0.00 0.00 46.78 3.18
2410 4322 9.631257 TTCCATCTTATACATCAACAATCATGT 57.369 29.630 0.00 0.00 43.14 3.21
2432 4344 9.936759 TGAGCGTTAATATAATGTGATATTCCA 57.063 29.630 0.00 0.00 34.54 3.53
2437 4349 9.921637 TGTCATGAGCGTTAATATAATGTGATA 57.078 29.630 0.00 0.00 0.00 2.15
2438 4350 8.831715 TGTCATGAGCGTTAATATAATGTGAT 57.168 30.769 0.00 0.00 0.00 3.06
2439 4351 7.384932 CCTGTCATGAGCGTTAATATAATGTGA 59.615 37.037 0.00 0.00 0.00 3.58
2440 4352 7.360353 CCCTGTCATGAGCGTTAATATAATGTG 60.360 40.741 0.00 0.00 0.00 3.21
2441 4353 6.650807 CCCTGTCATGAGCGTTAATATAATGT 59.349 38.462 0.00 0.00 0.00 2.71
2442 4354 6.402550 GCCCTGTCATGAGCGTTAATATAATG 60.403 42.308 0.00 0.00 0.00 1.90
2443 4355 5.643777 GCCCTGTCATGAGCGTTAATATAAT 59.356 40.000 0.00 0.00 0.00 1.28
2444 4356 4.994852 GCCCTGTCATGAGCGTTAATATAA 59.005 41.667 0.00 0.00 0.00 0.98
2445 4357 4.566004 GCCCTGTCATGAGCGTTAATATA 58.434 43.478 0.00 0.00 0.00 0.86
2446 4358 3.403038 GCCCTGTCATGAGCGTTAATAT 58.597 45.455 0.00 0.00 0.00 1.28
2447 4359 2.801699 CGCCCTGTCATGAGCGTTAATA 60.802 50.000 16.43 0.00 43.45 0.98
2448 4360 1.668419 GCCCTGTCATGAGCGTTAAT 58.332 50.000 0.00 0.00 0.00 1.40
2449 4361 0.739462 CGCCCTGTCATGAGCGTTAA 60.739 55.000 16.43 0.00 43.45 2.01
2450 4362 1.153647 CGCCCTGTCATGAGCGTTA 60.154 57.895 16.43 0.00 43.45 3.18
2451 4363 2.434884 CGCCCTGTCATGAGCGTT 60.435 61.111 16.43 0.00 43.45 4.84
2455 4367 2.087462 TATCGGCGCCCTGTCATGAG 62.087 60.000 23.46 2.86 0.00 2.90
2456 4368 1.681486 TTATCGGCGCCCTGTCATGA 61.681 55.000 23.46 10.99 0.00 3.07
2457 4369 0.813610 TTTATCGGCGCCCTGTCATG 60.814 55.000 23.46 4.61 0.00 3.07
2458 4370 0.532862 CTTTATCGGCGCCCTGTCAT 60.533 55.000 23.46 7.77 0.00 3.06
2459 4371 1.153449 CTTTATCGGCGCCCTGTCA 60.153 57.895 23.46 0.82 0.00 3.58
2460 4372 2.534903 GCTTTATCGGCGCCCTGTC 61.535 63.158 23.46 0.00 0.00 3.51
2461 4373 2.513897 GCTTTATCGGCGCCCTGT 60.514 61.111 23.46 9.66 0.00 4.00
2462 4374 0.602638 TATGCTTTATCGGCGCCCTG 60.603 55.000 23.46 8.15 0.00 4.45
2463 4375 0.107831 TTATGCTTTATCGGCGCCCT 59.892 50.000 23.46 11.53 0.00 5.19
2464 4376 0.948678 TTTATGCTTTATCGGCGCCC 59.051 50.000 23.46 5.06 0.00 6.13
2465 4377 2.766970 TTTTATGCTTTATCGGCGCC 57.233 45.000 19.07 19.07 0.00 6.53
2466 4378 5.286082 CCATAATTTTATGCTTTATCGGCGC 59.714 40.000 0.00 0.00 39.30 6.53
2467 4379 6.378582 ACCATAATTTTATGCTTTATCGGCG 58.621 36.000 0.00 0.00 39.30 6.46
2468 4380 8.487176 CAAACCATAATTTTATGCTTTATCGGC 58.513 33.333 5.02 0.00 39.30 5.54
2469 4381 9.528018 ACAAACCATAATTTTATGCTTTATCGG 57.472 29.630 5.02 0.00 39.30 4.18
2508 4420 8.771521 ACCAACTAATTAATGGGGTAAATACC 57.228 34.615 17.09 0.73 45.71 2.73
2606 4518 9.784531 CCTTAATCTACATGATACAGGTTTCAT 57.215 33.333 0.00 0.34 34.45 2.57
2607 4519 8.768397 ACCTTAATCTACATGATACAGGTTTCA 58.232 33.333 0.00 0.00 41.43 2.69
2608 4520 9.262358 GACCTTAATCTACATGATACAGGTTTC 57.738 37.037 0.00 0.00 42.92 2.78
2609 4521 8.768397 TGACCTTAATCTACATGATACAGGTTT 58.232 33.333 0.00 0.00 42.92 3.27
2610 4522 8.319057 TGACCTTAATCTACATGATACAGGTT 57.681 34.615 0.00 0.00 42.92 3.50
2611 4523 7.914427 TGACCTTAATCTACATGATACAGGT 57.086 36.000 0.00 0.99 44.31 4.00
2645 4557 9.947433 TCGGAACAAATAGGAGTAGATTTTTAA 57.053 29.630 0.00 0.00 0.00 1.52
2646 4558 9.947433 TTCGGAACAAATAGGAGTAGATTTTTA 57.053 29.630 0.00 0.00 0.00 1.52
2647 4559 8.857694 TTCGGAACAAATAGGAGTAGATTTTT 57.142 30.769 0.00 0.00 0.00 1.94
2648 4560 8.857694 TTTCGGAACAAATAGGAGTAGATTTT 57.142 30.769 0.00 0.00 0.00 1.82
2651 4563 9.543783 GTTATTTCGGAACAAATAGGAGTAGAT 57.456 33.333 0.00 0.00 31.38 1.98
2652 4564 8.755977 AGTTATTTCGGAACAAATAGGAGTAGA 58.244 33.333 0.00 0.00 31.38 2.59
2653 4565 8.818057 CAGTTATTTCGGAACAAATAGGAGTAG 58.182 37.037 0.00 0.00 31.38 2.57
2654 4566 8.533657 TCAGTTATTTCGGAACAAATAGGAGTA 58.466 33.333 0.00 0.00 31.38 2.59
2655 4567 7.391620 TCAGTTATTTCGGAACAAATAGGAGT 58.608 34.615 0.00 0.00 31.38 3.85
2656 4568 7.843490 TCAGTTATTTCGGAACAAATAGGAG 57.157 36.000 0.00 0.00 31.38 3.69
2657 4569 8.801882 ATTCAGTTATTTCGGAACAAATAGGA 57.198 30.769 0.00 0.00 31.38 2.94
2658 4570 9.855021 AAATTCAGTTATTTCGGAACAAATAGG 57.145 29.630 0.00 0.00 31.38 2.57
2662 4574 9.685828 CCTAAAATTCAGTTATTTCGGAACAAA 57.314 29.630 0.00 0.00 0.00 2.83
2663 4575 7.810759 GCCTAAAATTCAGTTATTTCGGAACAA 59.189 33.333 0.00 0.00 0.00 2.83
2664 4576 7.175990 AGCCTAAAATTCAGTTATTTCGGAACA 59.824 33.333 0.00 0.00 0.00 3.18
2665 4577 7.535997 AGCCTAAAATTCAGTTATTTCGGAAC 58.464 34.615 0.00 0.00 0.00 3.62
2666 4578 7.696992 AGCCTAAAATTCAGTTATTTCGGAA 57.303 32.000 0.00 0.00 0.00 4.30
2667 4579 7.696992 AAGCCTAAAATTCAGTTATTTCGGA 57.303 32.000 0.00 0.00 0.00 4.55
2668 4580 8.757164 AAAAGCCTAAAATTCAGTTATTTCGG 57.243 30.769 0.00 0.00 0.00 4.30
2669 4581 9.405587 TGAAAAGCCTAAAATTCAGTTATTTCG 57.594 29.630 0.00 0.00 0.00 3.46
2675 4587 9.914131 GACTTATGAAAAGCCTAAAATTCAGTT 57.086 29.630 0.00 0.00 35.47 3.16
2676 4588 9.077885 TGACTTATGAAAAGCCTAAAATTCAGT 57.922 29.630 0.00 0.00 35.47 3.41
2677 4589 9.912634 TTGACTTATGAAAAGCCTAAAATTCAG 57.087 29.630 0.00 0.00 35.47 3.02
2682 4594 9.744468 GAAGTTTGACTTATGAAAAGCCTAAAA 57.256 29.630 0.00 0.00 38.80 1.52
2683 4595 9.131791 AGAAGTTTGACTTATGAAAAGCCTAAA 57.868 29.630 0.00 0.00 38.80 1.85
2684 4596 8.691661 AGAAGTTTGACTTATGAAAAGCCTAA 57.308 30.769 0.00 0.00 38.80 2.69
2685 4597 8.691661 AAGAAGTTTGACTTATGAAAAGCCTA 57.308 30.769 0.00 0.00 38.80 3.93
2686 4598 7.285401 TGAAGAAGTTTGACTTATGAAAAGCCT 59.715 33.333 0.00 0.00 38.80 4.58
2687 4599 7.425606 TGAAGAAGTTTGACTTATGAAAAGCC 58.574 34.615 0.00 0.00 38.80 4.35
2688 4600 8.856490 TTGAAGAAGTTTGACTTATGAAAAGC 57.144 30.769 0.00 0.00 38.80 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.