Multiple sequence alignment - TraesCS6B01G328100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G328100 chr6B 100.000 2351 0 0 1 2351 577462290 577459940 0.000000e+00 4342.0
1 TraesCS6B01G328100 chr6B 89.976 409 35 4 1 404 189103295 189102888 7.440000e-145 523.0
2 TraesCS6B01G328100 chr6B 88.614 404 38 6 4 401 313315314 313315715 3.510000e-133 484.0
3 TraesCS6B01G328100 chr6D 85.152 1320 93 41 432 1713 386519848 386518594 0.000000e+00 1256.0
4 TraesCS6B01G328100 chr6D 88.978 372 18 10 1676 2033 386518296 386517934 2.770000e-119 438.0
5 TraesCS6B01G328100 chr6D 93.548 93 2 3 1676 1767 386518472 386518383 4.080000e-28 135.0
6 TraesCS6B01G328100 chr6D 92.473 93 3 3 1676 1767 386518560 386518471 1.900000e-26 130.0
7 TraesCS6B01G328100 chr6D 91.398 93 4 3 1676 1767 386518384 386518295 8.820000e-25 124.0
8 TraesCS6B01G328100 chr6A 83.583 1267 74 55 601 1842 531717865 531716708 0.000000e+00 1064.0
9 TraesCS6B01G328100 chr6A 89.623 318 15 5 1879 2187 531716705 531716397 2.830000e-104 388.0
10 TraesCS6B01G328100 chr6A 95.745 94 4 0 2258 2351 531713076 531712983 4.050000e-33 152.0
11 TraesCS6B01G328100 chr4B 88.557 402 38 6 9 404 541445746 541445347 4.540000e-132 481.0
12 TraesCS6B01G328100 chr4B 87.841 403 43 5 4 401 551729868 551729467 3.540000e-128 468.0
13 TraesCS6B01G328100 chr7B 88.107 412 38 3 1 401 602018401 602018812 1.630000e-131 479.0
14 TraesCS6B01G328100 chr5B 88.148 405 37 8 1 401 507200546 507200149 2.730000e-129 472.0
15 TraesCS6B01G328100 chr5B 86.715 414 44 9 4 410 497909891 497909482 1.280000e-122 449.0
16 TraesCS6B01G328100 chr5B 82.192 73 9 2 1811 1883 455364236 455364168 2.520000e-05 60.2
17 TraesCS6B01G328100 chr3D 87.901 405 38 10 4 401 449746378 449745978 1.270000e-127 466.0
18 TraesCS6B01G328100 chr3D 87.282 401 40 8 4 401 562585368 562585760 4.610000e-122 448.0
19 TraesCS6B01G328100 chr1A 90.385 52 4 1 1832 1882 24721176 24721227 1.510000e-07 67.6
20 TraesCS6B01G328100 chrUn 88.889 54 4 2 1829 1881 135090706 135090758 5.420000e-07 65.8
21 TraesCS6B01G328100 chrUn 88.889 54 4 2 1829 1881 152687562 152687614 5.420000e-07 65.8
22 TraesCS6B01G328100 chr3A 87.500 56 7 0 1826 1881 501650511 501650566 5.420000e-07 65.8
23 TraesCS6B01G328100 chr2B 88.889 54 4 2 1833 1884 260607315 260607262 5.420000e-07 65.8
24 TraesCS6B01G328100 chr2B 91.489 47 4 0 1835 1881 741113217 741113171 5.420000e-07 65.8
25 TraesCS6B01G328100 chr2B 97.222 36 1 0 1962 1997 625929304 625929339 7.020000e-06 62.1
26 TraesCS6B01G328100 chr3B 88.462 52 6 0 1834 1885 305751819 305751768 1.950000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G328100 chr6B 577459940 577462290 2350 True 4342.000000 4342 100.000000 1 2351 1 chr6B.!!$R2 2350
1 TraesCS6B01G328100 chr6D 386517934 386519848 1914 True 416.600000 1256 90.309800 432 2033 5 chr6D.!!$R1 1601
2 TraesCS6B01G328100 chr6A 531712983 531717865 4882 True 534.666667 1064 89.650333 601 2351 3 chr6A.!!$R1 1750

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.037232 ACAGAGAAGTGCTTACCGCC 60.037 55.0 0.0 0.0 38.05 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1842 2245 0.030501 ACATTATGGGACGGAGGGGA 60.031 55.0 0.0 0.0 0.0 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.797025 AACAGAGAAGTGCTTACCGC 58.203 50.000 0.00 0.00 39.77 5.68
20 21 0.037232 ACAGAGAAGTGCTTACCGCC 60.037 55.000 0.00 0.00 38.05 6.13
21 22 0.037326 CAGAGAAGTGCTTACCGCCA 60.037 55.000 0.00 0.00 38.05 5.69
22 23 0.905357 AGAGAAGTGCTTACCGCCAT 59.095 50.000 0.00 0.00 38.05 4.40
23 24 1.279271 AGAGAAGTGCTTACCGCCATT 59.721 47.619 0.00 0.00 38.05 3.16
24 25 1.398390 GAGAAGTGCTTACCGCCATTG 59.602 52.381 0.00 0.00 38.05 2.82
25 26 0.179163 GAAGTGCTTACCGCCATTGC 60.179 55.000 0.00 0.00 38.05 3.56
26 27 1.595093 AAGTGCTTACCGCCATTGCC 61.595 55.000 0.00 0.00 38.05 4.52
27 28 3.130819 TGCTTACCGCCATTGCCG 61.131 61.111 0.00 0.00 38.05 5.69
28 29 4.552745 GCTTACCGCCATTGCCGC 62.553 66.667 0.00 0.00 0.00 6.53
29 30 2.824041 CTTACCGCCATTGCCGCT 60.824 61.111 0.00 0.00 0.00 5.52
30 31 3.112126 CTTACCGCCATTGCCGCTG 62.112 63.158 0.00 0.00 0.00 5.18
36 37 4.137872 CCATTGCCGCTGCCCAAG 62.138 66.667 0.00 0.75 36.33 3.61
37 38 3.376078 CATTGCCGCTGCCCAAGT 61.376 61.111 0.00 0.00 36.33 3.16
38 39 3.376078 ATTGCCGCTGCCCAAGTG 61.376 61.111 0.00 0.00 36.33 3.16
39 40 3.866379 ATTGCCGCTGCCCAAGTGA 62.866 57.895 0.00 0.00 38.83 3.41
40 41 3.866379 TTGCCGCTGCCCAAGTGAT 62.866 57.895 0.00 0.00 38.83 3.06
41 42 3.818787 GCCGCTGCCCAAGTGATG 61.819 66.667 0.00 0.00 38.83 3.07
42 43 2.046023 CCGCTGCCCAAGTGATGA 60.046 61.111 0.00 0.00 38.83 2.92
43 44 1.452651 CCGCTGCCCAAGTGATGAT 60.453 57.895 0.00 0.00 38.83 2.45
44 45 1.442526 CCGCTGCCCAAGTGATGATC 61.443 60.000 0.00 0.00 38.83 2.92
45 46 1.442526 CGCTGCCCAAGTGATGATCC 61.443 60.000 0.00 0.00 38.83 3.36
46 47 1.442526 GCTGCCCAAGTGATGATCCG 61.443 60.000 0.00 0.00 0.00 4.18
47 48 1.442526 CTGCCCAAGTGATGATCCGC 61.443 60.000 0.00 0.00 0.00 5.54
48 49 1.153086 GCCCAAGTGATGATCCGCT 60.153 57.895 0.00 0.00 0.00 5.52
49 50 1.162800 GCCCAAGTGATGATCCGCTC 61.163 60.000 0.00 0.00 0.00 5.03
50 51 0.877649 CCCAAGTGATGATCCGCTCG 60.878 60.000 0.00 0.00 0.00 5.03
51 52 0.179100 CCAAGTGATGATCCGCTCGT 60.179 55.000 0.00 0.00 0.00 4.18
52 53 1.203928 CAAGTGATGATCCGCTCGTC 58.796 55.000 0.00 0.00 39.90 4.20
53 54 0.248661 AAGTGATGATCCGCTCGTCG 60.249 55.000 0.00 0.00 42.00 5.12
62 63 2.278206 CGCTCGTCGGTGATGGAG 60.278 66.667 0.00 0.00 33.78 3.86
63 64 2.885861 GCTCGTCGGTGATGGAGT 59.114 61.111 0.00 0.00 0.00 3.85
64 65 1.226717 GCTCGTCGGTGATGGAGTC 60.227 63.158 0.00 0.00 0.00 3.36
65 66 1.934220 GCTCGTCGGTGATGGAGTCA 61.934 60.000 0.00 0.00 0.00 3.41
66 67 0.099613 CTCGTCGGTGATGGAGTCAG 59.900 60.000 0.00 0.00 37.56 3.51
67 68 1.139734 CGTCGGTGATGGAGTCAGG 59.860 63.158 0.00 0.00 37.56 3.86
68 69 1.595993 CGTCGGTGATGGAGTCAGGT 61.596 60.000 0.00 0.00 37.56 4.00
69 70 0.108615 GTCGGTGATGGAGTCAGGTG 60.109 60.000 0.00 0.00 37.56 4.00
70 71 1.219124 CGGTGATGGAGTCAGGTGG 59.781 63.158 0.00 0.00 37.56 4.61
71 72 1.544825 CGGTGATGGAGTCAGGTGGT 61.545 60.000 0.00 0.00 37.56 4.16
72 73 0.250513 GGTGATGGAGTCAGGTGGTC 59.749 60.000 0.00 0.00 37.56 4.02
73 74 1.270907 GTGATGGAGTCAGGTGGTCT 58.729 55.000 0.00 0.00 37.56 3.85
74 75 1.625818 GTGATGGAGTCAGGTGGTCTT 59.374 52.381 0.00 0.00 37.56 3.01
75 76 1.902508 TGATGGAGTCAGGTGGTCTTC 59.097 52.381 0.00 0.00 31.80 2.87
76 77 2.183679 GATGGAGTCAGGTGGTCTTCT 58.816 52.381 0.00 0.00 0.00 2.85
77 78 2.103153 TGGAGTCAGGTGGTCTTCTT 57.897 50.000 0.00 0.00 0.00 2.52
78 79 1.694150 TGGAGTCAGGTGGTCTTCTTG 59.306 52.381 0.00 0.00 0.00 3.02
79 80 1.609320 GGAGTCAGGTGGTCTTCTTGC 60.609 57.143 0.00 0.00 0.00 4.01
80 81 1.346068 GAGTCAGGTGGTCTTCTTGCT 59.654 52.381 0.00 0.00 0.00 3.91
81 82 1.346068 AGTCAGGTGGTCTTCTTGCTC 59.654 52.381 0.00 0.00 0.00 4.26
82 83 1.346068 GTCAGGTGGTCTTCTTGCTCT 59.654 52.381 0.00 0.00 0.00 4.09
83 84 1.620819 TCAGGTGGTCTTCTTGCTCTC 59.379 52.381 0.00 0.00 0.00 3.20
84 85 1.622811 CAGGTGGTCTTCTTGCTCTCT 59.377 52.381 0.00 0.00 0.00 3.10
85 86 1.899142 AGGTGGTCTTCTTGCTCTCTC 59.101 52.381 0.00 0.00 0.00 3.20
86 87 1.066502 GGTGGTCTTCTTGCTCTCTCC 60.067 57.143 0.00 0.00 0.00 3.71
87 88 0.891373 TGGTCTTCTTGCTCTCTCCG 59.109 55.000 0.00 0.00 0.00 4.63
88 89 1.178276 GGTCTTCTTGCTCTCTCCGA 58.822 55.000 0.00 0.00 0.00 4.55
89 90 1.754226 GGTCTTCTTGCTCTCTCCGAT 59.246 52.381 0.00 0.00 0.00 4.18
90 91 2.223711 GGTCTTCTTGCTCTCTCCGATC 60.224 54.545 0.00 0.00 0.00 3.69
91 92 2.028130 TCTTCTTGCTCTCTCCGATCC 58.972 52.381 0.00 0.00 0.00 3.36
92 93 0.741326 TTCTTGCTCTCTCCGATCCG 59.259 55.000 0.00 0.00 0.00 4.18
93 94 1.299773 CTTGCTCTCTCCGATCCGC 60.300 63.158 0.00 0.00 0.00 5.54
94 95 2.691674 CTTGCTCTCTCCGATCCGCC 62.692 65.000 0.00 0.00 0.00 6.13
95 96 4.335584 GCTCTCTCCGATCCGCCG 62.336 72.222 0.00 0.00 0.00 6.46
96 97 2.902846 CTCTCTCCGATCCGCCGT 60.903 66.667 0.00 0.00 0.00 5.68
97 98 3.187699 CTCTCTCCGATCCGCCGTG 62.188 68.421 0.00 0.00 0.00 4.94
98 99 4.933064 CTCTCCGATCCGCCGTGC 62.933 72.222 0.00 0.00 0.00 5.34
104 105 4.585526 GATCCGCCGTGCCGATGA 62.586 66.667 4.92 0.00 0.00 2.92
105 106 4.592192 ATCCGCCGTGCCGATGAG 62.592 66.667 0.00 0.00 0.00 2.90
108 109 4.498520 CGCCGTGCCGATGAGAGT 62.499 66.667 0.00 0.00 0.00 3.24
109 110 2.125512 GCCGTGCCGATGAGAGTT 60.126 61.111 0.00 0.00 0.00 3.01
110 111 2.456119 GCCGTGCCGATGAGAGTTG 61.456 63.158 0.00 0.00 0.00 3.16
111 112 1.811266 CCGTGCCGATGAGAGTTGG 60.811 63.158 0.00 0.00 0.00 3.77
112 113 1.811266 CGTGCCGATGAGAGTTGGG 60.811 63.158 0.00 0.00 0.00 4.12
113 114 1.596934 GTGCCGATGAGAGTTGGGA 59.403 57.895 0.00 0.00 0.00 4.37
114 115 0.460987 GTGCCGATGAGAGTTGGGAG 60.461 60.000 0.00 0.00 0.00 4.30
115 116 0.614697 TGCCGATGAGAGTTGGGAGA 60.615 55.000 0.00 0.00 0.00 3.71
116 117 0.103937 GCCGATGAGAGTTGGGAGAG 59.896 60.000 0.00 0.00 0.00 3.20
117 118 1.479709 CCGATGAGAGTTGGGAGAGT 58.520 55.000 0.00 0.00 0.00 3.24
118 119 1.135915 CCGATGAGAGTTGGGAGAGTG 59.864 57.143 0.00 0.00 0.00 3.51
119 120 1.135915 CGATGAGAGTTGGGAGAGTGG 59.864 57.143 0.00 0.00 0.00 4.00
120 121 1.484240 GATGAGAGTTGGGAGAGTGGG 59.516 57.143 0.00 0.00 0.00 4.61
121 122 0.545309 TGAGAGTTGGGAGAGTGGGG 60.545 60.000 0.00 0.00 0.00 4.96
122 123 1.229658 AGAGTTGGGAGAGTGGGGG 60.230 63.158 0.00 0.00 0.00 5.40
123 124 1.229529 GAGTTGGGAGAGTGGGGGA 60.230 63.158 0.00 0.00 0.00 4.81
124 125 1.229658 AGTTGGGAGAGTGGGGGAG 60.230 63.158 0.00 0.00 0.00 4.30
125 126 1.539124 GTTGGGAGAGTGGGGGAGT 60.539 63.158 0.00 0.00 0.00 3.85
126 127 1.538876 TTGGGAGAGTGGGGGAGTG 60.539 63.158 0.00 0.00 0.00 3.51
127 128 2.689034 GGGAGAGTGGGGGAGTGG 60.689 72.222 0.00 0.00 0.00 4.00
128 129 2.450243 GGAGAGTGGGGGAGTGGA 59.550 66.667 0.00 0.00 0.00 4.02
129 130 1.687493 GGAGAGTGGGGGAGTGGAG 60.687 68.421 0.00 0.00 0.00 3.86
130 131 1.388531 GAGAGTGGGGGAGTGGAGA 59.611 63.158 0.00 0.00 0.00 3.71
131 132 0.686112 GAGAGTGGGGGAGTGGAGAG 60.686 65.000 0.00 0.00 0.00 3.20
132 133 1.149782 AGAGTGGGGGAGTGGAGAGA 61.150 60.000 0.00 0.00 0.00 3.10
133 134 0.686112 GAGTGGGGGAGTGGAGAGAG 60.686 65.000 0.00 0.00 0.00 3.20
134 135 1.687493 GTGGGGGAGTGGAGAGAGG 60.687 68.421 0.00 0.00 0.00 3.69
135 136 2.041405 GGGGGAGTGGAGAGAGGG 60.041 72.222 0.00 0.00 0.00 4.30
136 137 2.637640 GGGGGAGTGGAGAGAGGGA 61.638 68.421 0.00 0.00 0.00 4.20
137 138 1.075600 GGGGAGTGGAGAGAGGGAG 60.076 68.421 0.00 0.00 0.00 4.30
138 139 1.760480 GGGAGTGGAGAGAGGGAGC 60.760 68.421 0.00 0.00 0.00 4.70
139 140 2.124693 GGAGTGGAGAGAGGGAGCG 61.125 68.421 0.00 0.00 0.00 5.03
140 141 2.043450 AGTGGAGAGAGGGAGCGG 60.043 66.667 0.00 0.00 0.00 5.52
141 142 2.363147 GTGGAGAGAGGGAGCGGT 60.363 66.667 0.00 0.00 0.00 5.68
142 143 2.363018 TGGAGAGAGGGAGCGGTG 60.363 66.667 0.00 0.00 0.00 4.94
143 144 2.043852 GGAGAGAGGGAGCGGTGA 60.044 66.667 0.00 0.00 0.00 4.02
144 145 2.124693 GGAGAGAGGGAGCGGTGAG 61.125 68.421 0.00 0.00 0.00 3.51
145 146 2.043450 AGAGAGGGAGCGGTGAGG 60.043 66.667 0.00 0.00 0.00 3.86
146 147 3.844090 GAGAGGGAGCGGTGAGGC 61.844 72.222 0.00 0.00 0.00 4.70
148 149 2.442272 GAGGGAGCGGTGAGGCTA 60.442 66.667 0.00 0.00 44.93 3.93
149 150 2.038975 AGGGAGCGGTGAGGCTAA 59.961 61.111 0.00 0.00 44.93 3.09
150 151 1.383248 AGGGAGCGGTGAGGCTAAT 60.383 57.895 0.00 0.00 44.93 1.73
151 152 0.105658 AGGGAGCGGTGAGGCTAATA 60.106 55.000 0.00 0.00 44.93 0.98
152 153 0.756903 GGGAGCGGTGAGGCTAATAA 59.243 55.000 0.00 0.00 44.93 1.40
153 154 1.540580 GGGAGCGGTGAGGCTAATAAC 60.541 57.143 0.00 0.00 44.93 1.89
154 155 1.413077 GGAGCGGTGAGGCTAATAACT 59.587 52.381 0.00 0.00 44.93 2.24
155 156 2.474816 GAGCGGTGAGGCTAATAACTG 58.525 52.381 0.00 0.00 44.93 3.16
156 157 2.100916 GAGCGGTGAGGCTAATAACTGA 59.899 50.000 0.00 0.00 44.93 3.41
157 158 2.159085 AGCGGTGAGGCTAATAACTGAC 60.159 50.000 0.00 0.00 42.62 3.51
158 159 2.460918 CGGTGAGGCTAATAACTGACG 58.539 52.381 0.00 0.00 0.00 4.35
159 160 2.798499 CGGTGAGGCTAATAACTGACGG 60.798 54.545 0.00 0.00 0.00 4.79
160 161 2.202566 GTGAGGCTAATAACTGACGGC 58.797 52.381 0.00 0.00 0.00 5.68
161 162 1.202371 TGAGGCTAATAACTGACGGCG 60.202 52.381 4.80 4.80 0.00 6.46
162 163 0.529992 AGGCTAATAACTGACGGCGC 60.530 55.000 6.90 0.00 0.00 6.53
163 164 0.529992 GGCTAATAACTGACGGCGCT 60.530 55.000 6.90 0.00 0.00 5.92
164 165 1.287425 GCTAATAACTGACGGCGCTT 58.713 50.000 6.90 0.00 0.00 4.68
165 166 1.258197 GCTAATAACTGACGGCGCTTC 59.742 52.381 6.90 4.82 0.00 3.86
166 167 1.517276 CTAATAACTGACGGCGCTTCG 59.483 52.381 6.90 5.82 0.00 3.79
167 168 1.082117 AATAACTGACGGCGCTTCGG 61.082 55.000 6.90 12.04 0.00 4.30
168 169 2.901051 ATAACTGACGGCGCTTCGGG 62.901 60.000 18.66 10.45 0.00 5.14
170 171 4.735132 CTGACGGCGCTTCGGGAA 62.735 66.667 6.90 0.00 0.00 3.97
171 172 4.735132 TGACGGCGCTTCGGGAAG 62.735 66.667 6.90 4.06 41.24 3.46
179 180 2.793946 CTTCGGGAAGCAATGCGG 59.206 61.111 0.00 0.00 0.00 5.69
180 181 3.401243 CTTCGGGAAGCAATGCGGC 62.401 63.158 0.00 0.00 0.00 6.53
187 188 2.265739 AGCAATGCGGCTTCTCGA 59.734 55.556 0.00 0.00 42.71 4.04
188 189 1.812922 AGCAATGCGGCTTCTCGAG 60.813 57.895 5.93 5.93 42.71 4.04
251 252 3.741325 GCCCTGGCCCTAGAGAAA 58.259 61.111 0.00 0.00 34.56 2.52
252 253 1.224870 GCCCTGGCCCTAGAGAAAC 59.775 63.158 0.00 0.00 34.56 2.78
253 254 1.275421 GCCCTGGCCCTAGAGAAACT 61.275 60.000 0.00 0.00 34.56 2.66
254 255 0.543749 CCCTGGCCCTAGAGAAACTG 59.456 60.000 0.00 0.00 0.00 3.16
255 256 0.107459 CCTGGCCCTAGAGAAACTGC 60.107 60.000 0.00 0.00 0.00 4.40
256 257 0.107459 CTGGCCCTAGAGAAACTGCC 60.107 60.000 0.00 0.00 36.24 4.85
257 258 1.153349 GGCCCTAGAGAAACTGCCG 60.153 63.158 0.00 0.00 0.00 5.69
258 259 1.614241 GGCCCTAGAGAAACTGCCGA 61.614 60.000 0.00 0.00 0.00 5.54
259 260 0.466124 GCCCTAGAGAAACTGCCGAT 59.534 55.000 0.00 0.00 0.00 4.18
260 261 1.134371 GCCCTAGAGAAACTGCCGATT 60.134 52.381 0.00 0.00 0.00 3.34
261 262 2.827652 CCCTAGAGAAACTGCCGATTC 58.172 52.381 0.00 0.00 0.00 2.52
262 263 2.464865 CCTAGAGAAACTGCCGATTCG 58.535 52.381 0.00 0.00 0.00 3.34
291 292 3.710722 CGAGCCAGGCCCAGAAGT 61.711 66.667 8.22 0.00 0.00 3.01
292 293 2.045536 GAGCCAGGCCCAGAAGTG 60.046 66.667 8.22 0.00 0.00 3.16
293 294 4.357279 AGCCAGGCCCAGAAGTGC 62.357 66.667 8.22 0.00 0.00 4.40
294 295 4.357279 GCCAGGCCCAGAAGTGCT 62.357 66.667 0.00 0.00 0.00 4.40
295 296 2.437897 CCAGGCCCAGAAGTGCTT 59.562 61.111 0.00 0.00 0.00 3.91
296 297 1.228675 CCAGGCCCAGAAGTGCTTT 60.229 57.895 0.00 0.00 0.00 3.51
297 298 0.038166 CCAGGCCCAGAAGTGCTTTA 59.962 55.000 0.00 0.00 0.00 1.85
298 299 1.547675 CCAGGCCCAGAAGTGCTTTAA 60.548 52.381 0.00 0.00 0.00 1.52
299 300 1.815003 CAGGCCCAGAAGTGCTTTAAG 59.185 52.381 0.00 0.00 0.00 1.85
300 301 1.177401 GGCCCAGAAGTGCTTTAAGG 58.823 55.000 0.00 0.00 0.00 2.69
301 302 1.547901 GGCCCAGAAGTGCTTTAAGGT 60.548 52.381 0.00 0.00 0.00 3.50
302 303 2.239400 GCCCAGAAGTGCTTTAAGGTT 58.761 47.619 0.00 0.00 0.00 3.50
303 304 2.229062 GCCCAGAAGTGCTTTAAGGTTC 59.771 50.000 0.00 0.00 0.00 3.62
304 305 2.484264 CCCAGAAGTGCTTTAAGGTTCG 59.516 50.000 0.00 0.00 0.00 3.95
305 306 3.139077 CCAGAAGTGCTTTAAGGTTCGT 58.861 45.455 0.00 0.00 0.00 3.85
306 307 3.058914 CCAGAAGTGCTTTAAGGTTCGTG 60.059 47.826 0.00 0.00 0.00 4.35
307 308 2.548480 AGAAGTGCTTTAAGGTTCGTGC 59.452 45.455 0.00 0.00 0.00 5.34
308 309 1.235724 AGTGCTTTAAGGTTCGTGCC 58.764 50.000 0.00 0.00 0.00 5.01
309 310 0.948678 GTGCTTTAAGGTTCGTGCCA 59.051 50.000 0.00 0.00 0.00 4.92
310 311 1.539827 GTGCTTTAAGGTTCGTGCCAT 59.460 47.619 0.00 0.00 0.00 4.40
311 312 1.539388 TGCTTTAAGGTTCGTGCCATG 59.461 47.619 0.00 0.00 0.00 3.66
312 313 1.732405 GCTTTAAGGTTCGTGCCATGC 60.732 52.381 0.00 0.00 0.00 4.06
313 314 0.519519 TTTAAGGTTCGTGCCATGCG 59.480 50.000 0.00 0.00 0.00 4.73
314 315 1.302383 TTAAGGTTCGTGCCATGCGG 61.302 55.000 0.00 0.00 0.00 5.69
324 325 2.990967 CCATGCGGGCCAAACAGT 60.991 61.111 4.39 0.00 0.00 3.55
325 326 1.677300 CCATGCGGGCCAAACAGTA 60.677 57.895 4.39 0.00 0.00 2.74
326 327 1.247419 CCATGCGGGCCAAACAGTAA 61.247 55.000 4.39 0.00 0.00 2.24
327 328 0.600557 CATGCGGGCCAAACAGTAAA 59.399 50.000 4.39 0.00 0.00 2.01
328 329 1.000283 CATGCGGGCCAAACAGTAAAA 60.000 47.619 4.39 0.00 0.00 1.52
329 330 0.671251 TGCGGGCCAAACAGTAAAAG 59.329 50.000 4.39 0.00 0.00 2.27
330 331 0.666274 GCGGGCCAAACAGTAAAAGC 60.666 55.000 4.39 0.00 0.00 3.51
331 332 0.671251 CGGGCCAAACAGTAAAAGCA 59.329 50.000 4.39 0.00 0.00 3.91
332 333 1.601914 CGGGCCAAACAGTAAAAGCAC 60.602 52.381 4.39 0.00 0.00 4.40
333 334 1.601914 GGGCCAAACAGTAAAAGCACG 60.602 52.381 4.39 0.00 0.00 5.34
334 335 1.128513 GCCAAACAGTAAAAGCACGC 58.871 50.000 0.00 0.00 0.00 5.34
335 336 1.535015 GCCAAACAGTAAAAGCACGCA 60.535 47.619 0.00 0.00 0.00 5.24
336 337 2.803451 CCAAACAGTAAAAGCACGCAA 58.197 42.857 0.00 0.00 0.00 4.85
338 339 2.119671 AACAGTAAAAGCACGCAAGC 57.880 45.000 0.00 0.00 45.62 4.01
339 340 1.021202 ACAGTAAAAGCACGCAAGCA 58.979 45.000 0.00 0.00 45.62 3.91
340 341 1.403679 ACAGTAAAAGCACGCAAGCAA 59.596 42.857 0.00 0.00 45.62 3.91
341 342 2.159310 ACAGTAAAAGCACGCAAGCAAA 60.159 40.909 0.00 0.00 45.62 3.68
342 343 2.216263 CAGTAAAAGCACGCAAGCAAAC 59.784 45.455 0.00 0.00 45.62 2.93
343 344 2.159310 AGTAAAAGCACGCAAGCAAACA 60.159 40.909 0.00 0.00 45.62 2.83
344 345 1.280066 AAAAGCACGCAAGCAAACAG 58.720 45.000 0.00 0.00 45.62 3.16
345 346 0.528249 AAAGCACGCAAGCAAACAGG 60.528 50.000 0.00 0.00 45.62 4.00
346 347 2.959220 AAGCACGCAAGCAAACAGGC 62.959 55.000 0.00 0.00 45.62 4.85
347 348 2.355009 CACGCAAGCAAACAGGCC 60.355 61.111 0.00 0.00 45.62 5.19
348 349 3.964875 ACGCAAGCAAACAGGCCG 61.965 61.111 0.00 0.00 45.62 6.13
349 350 4.705519 CGCAAGCAAACAGGCCGG 62.706 66.667 0.00 0.00 0.00 6.13
350 351 3.294493 GCAAGCAAACAGGCCGGA 61.294 61.111 10.86 0.00 0.00 5.14
351 352 2.639327 GCAAGCAAACAGGCCGGAT 61.639 57.895 10.86 0.00 0.00 4.18
352 353 1.966762 CAAGCAAACAGGCCGGATT 59.033 52.632 10.86 0.00 0.00 3.01
353 354 0.109132 CAAGCAAACAGGCCGGATTC 60.109 55.000 10.86 0.00 0.00 2.52
354 355 0.251341 AAGCAAACAGGCCGGATTCT 60.251 50.000 10.86 1.13 0.00 2.40
355 356 0.251341 AGCAAACAGGCCGGATTCTT 60.251 50.000 10.86 0.00 0.00 2.52
356 357 0.171231 GCAAACAGGCCGGATTCTTC 59.829 55.000 10.86 0.00 0.00 2.87
357 358 0.811281 CAAACAGGCCGGATTCTTCC 59.189 55.000 10.86 0.00 38.81 3.46
358 359 0.323451 AAACAGGCCGGATTCTTCCC 60.323 55.000 10.86 0.00 39.01 3.97
359 360 2.203070 CAGGCCGGATTCTTCCCG 60.203 66.667 5.05 0.00 46.10 5.14
360 361 4.176752 AGGCCGGATTCTTCCCGC 62.177 66.667 5.05 0.00 45.24 6.13
382 383 3.851955 GCCTGATTGGGCCTCATG 58.148 61.111 4.53 0.00 45.92 3.07
383 384 2.496291 GCCTGATTGGGCCTCATGC 61.496 63.158 4.53 6.18 45.92 4.06
384 385 1.076559 CCTGATTGGGCCTCATGCA 60.077 57.895 4.53 0.00 43.89 3.96
385 386 1.107538 CCTGATTGGGCCTCATGCAG 61.108 60.000 4.53 9.30 43.89 4.41
386 387 1.076559 TGATTGGGCCTCATGCAGG 60.077 57.895 4.53 0.00 46.82 4.85
393 394 4.100479 CCTCATGCAGGCAACCAA 57.900 55.556 0.00 0.00 34.56 3.67
394 395 2.353858 CCTCATGCAGGCAACCAAA 58.646 52.632 0.00 0.00 34.56 3.28
395 396 0.037975 CCTCATGCAGGCAACCAAAC 60.038 55.000 0.00 0.00 34.56 2.93
396 397 0.675083 CTCATGCAGGCAACCAAACA 59.325 50.000 0.00 0.00 37.17 2.83
397 398 1.068895 CTCATGCAGGCAACCAAACAA 59.931 47.619 0.00 0.00 37.17 2.83
398 399 1.068895 TCATGCAGGCAACCAAACAAG 59.931 47.619 0.00 0.00 37.17 3.16
399 400 0.249996 ATGCAGGCAACCAAACAAGC 60.250 50.000 0.00 0.00 37.17 4.01
402 403 2.811799 GGCAACCAAACAAGCCGT 59.188 55.556 0.00 0.00 37.41 5.68
403 404 2.034607 GGCAACCAAACAAGCCGTA 58.965 52.632 0.00 0.00 37.41 4.02
404 405 0.386113 GGCAACCAAACAAGCCGTAA 59.614 50.000 0.00 0.00 37.41 3.18
405 406 1.483316 GCAACCAAACAAGCCGTAAC 58.517 50.000 0.00 0.00 0.00 2.50
406 407 1.066454 GCAACCAAACAAGCCGTAACT 59.934 47.619 0.00 0.00 0.00 2.24
407 408 2.726633 CAACCAAACAAGCCGTAACTG 58.273 47.619 0.00 0.00 0.00 3.16
408 409 2.047002 ACCAAACAAGCCGTAACTGT 57.953 45.000 0.00 0.00 0.00 3.55
409 410 3.196939 ACCAAACAAGCCGTAACTGTA 57.803 42.857 0.00 0.00 0.00 2.74
410 411 3.543665 ACCAAACAAGCCGTAACTGTAA 58.456 40.909 0.00 0.00 0.00 2.41
411 412 3.313249 ACCAAACAAGCCGTAACTGTAAC 59.687 43.478 0.00 0.00 0.00 2.50
412 413 3.304190 CCAAACAAGCCGTAACTGTAACC 60.304 47.826 0.00 0.00 0.00 2.85
413 414 1.787012 ACAAGCCGTAACTGTAACCG 58.213 50.000 0.00 0.00 0.00 4.44
414 415 1.340889 ACAAGCCGTAACTGTAACCGA 59.659 47.619 0.00 0.00 0.00 4.69
415 416 2.028748 ACAAGCCGTAACTGTAACCGAT 60.029 45.455 0.00 0.00 0.00 4.18
416 417 2.288961 AGCCGTAACTGTAACCGATG 57.711 50.000 0.00 0.00 0.00 3.84
417 418 1.134907 AGCCGTAACTGTAACCGATGG 60.135 52.381 0.00 0.00 0.00 3.51
418 419 1.404583 GCCGTAACTGTAACCGATGGT 60.405 52.381 0.00 0.00 37.65 3.55
419 420 2.264813 CCGTAACTGTAACCGATGGTG 58.735 52.381 0.00 0.00 35.34 4.17
420 421 1.657094 CGTAACTGTAACCGATGGTGC 59.343 52.381 0.00 0.00 35.34 5.01
421 422 1.657094 GTAACTGTAACCGATGGTGCG 59.343 52.381 0.00 0.00 35.34 5.34
429 430 3.379650 CCGATGGTGCGGTATCTTT 57.620 52.632 0.00 0.00 46.07 2.52
430 431 1.217882 CCGATGGTGCGGTATCTTTC 58.782 55.000 0.00 0.00 46.07 2.62
438 439 2.351726 GTGCGGTATCTTTCTTGCGATT 59.648 45.455 0.00 0.00 0.00 3.34
459 460 2.546368 TCACGAAAACCCTTGTCATTCG 59.454 45.455 4.84 4.84 43.59 3.34
469 470 7.461182 AACCCTTGTCATTCGAATTTGAATA 57.539 32.000 18.59 3.36 36.46 1.75
491 492 9.495572 GAATATAGGTTATGCTTGGATATAGGC 57.504 37.037 0.00 0.00 0.00 3.93
497 498 6.407074 GGTTATGCTTGGATATAGGCTACGAT 60.407 42.308 0.00 0.00 0.00 3.73
498 499 5.683876 ATGCTTGGATATAGGCTACGATT 57.316 39.130 0.00 0.00 0.00 3.34
505 506 5.419155 TGGATATAGGCTACGATTTGGAGAG 59.581 44.000 0.00 0.00 0.00 3.20
506 507 5.652891 GGATATAGGCTACGATTTGGAGAGA 59.347 44.000 0.00 0.00 0.00 3.10
523 524 2.008329 GAGACTCTGAATGCCTGCAAG 58.992 52.381 0.00 0.00 0.00 4.01
566 588 5.880054 AGGTGTCGATTTGAATTTACCAG 57.120 39.130 0.00 0.00 0.00 4.00
568 590 6.180472 AGGTGTCGATTTGAATTTACCAGAT 58.820 36.000 0.00 0.00 0.00 2.90
569 591 7.335627 AGGTGTCGATTTGAATTTACCAGATA 58.664 34.615 0.00 0.00 0.00 1.98
570 592 7.495934 AGGTGTCGATTTGAATTTACCAGATAG 59.504 37.037 0.00 0.00 0.00 2.08
571 593 7.494625 GGTGTCGATTTGAATTTACCAGATAGA 59.505 37.037 0.00 0.00 0.00 1.98
572 594 8.543774 GTGTCGATTTGAATTTACCAGATAGAG 58.456 37.037 0.00 0.00 0.00 2.43
573 595 7.710907 TGTCGATTTGAATTTACCAGATAGAGG 59.289 37.037 0.00 0.00 0.00 3.69
574 596 7.711339 GTCGATTTGAATTTACCAGATAGAGGT 59.289 37.037 0.00 0.00 43.14 3.85
575 597 7.926555 TCGATTTGAATTTACCAGATAGAGGTC 59.073 37.037 0.00 0.00 40.54 3.85
576 598 7.171678 CGATTTGAATTTACCAGATAGAGGTCC 59.828 40.741 0.00 0.00 40.54 4.46
577 599 5.888982 TGAATTTACCAGATAGAGGTCCC 57.111 43.478 0.00 0.00 40.54 4.46
578 600 5.285401 TGAATTTACCAGATAGAGGTCCCA 58.715 41.667 0.00 0.00 40.54 4.37
579 601 5.366768 TGAATTTACCAGATAGAGGTCCCAG 59.633 44.000 0.00 0.00 40.54 4.45
580 602 2.383442 TACCAGATAGAGGTCCCAGC 57.617 55.000 0.00 0.00 40.54 4.85
581 603 0.639392 ACCAGATAGAGGTCCCAGCT 59.361 55.000 0.00 0.00 32.90 4.24
582 604 1.860240 ACCAGATAGAGGTCCCAGCTA 59.140 52.381 0.00 0.00 32.90 3.32
583 605 2.247635 ACCAGATAGAGGTCCCAGCTAA 59.752 50.000 0.00 0.00 32.90 3.09
584 606 3.116551 ACCAGATAGAGGTCCCAGCTAAT 60.117 47.826 0.00 0.00 32.90 1.73
585 607 3.906846 CCAGATAGAGGTCCCAGCTAATT 59.093 47.826 0.00 0.00 0.00 1.40
586 608 4.349342 CCAGATAGAGGTCCCAGCTAATTT 59.651 45.833 0.00 0.00 0.00 1.82
587 609 5.544176 CCAGATAGAGGTCCCAGCTAATTTA 59.456 44.000 0.00 0.00 0.00 1.40
588 610 6.043243 CCAGATAGAGGTCCCAGCTAATTTAA 59.957 42.308 0.00 0.00 0.00 1.52
589 611 7.420214 CCAGATAGAGGTCCCAGCTAATTTAAA 60.420 40.741 0.00 0.00 0.00 1.52
590 612 7.993183 CAGATAGAGGTCCCAGCTAATTTAAAA 59.007 37.037 0.00 0.00 0.00 1.52
591 613 8.557450 AGATAGAGGTCCCAGCTAATTTAAAAA 58.443 33.333 0.00 0.00 0.00 1.94
624 646 1.425428 GCAACTGTATGCGGCAGTC 59.575 57.895 9.25 4.54 45.36 3.51
625 647 1.709760 CAACTGTATGCGGCAGTCG 59.290 57.895 9.25 0.00 45.36 4.18
626 648 1.447838 AACTGTATGCGGCAGTCGG 60.448 57.895 9.25 11.17 45.36 4.79
627 649 2.586079 CTGTATGCGGCAGTCGGG 60.586 66.667 9.25 0.00 39.69 5.14
628 650 4.830765 TGTATGCGGCAGTCGGGC 62.831 66.667 9.25 0.00 39.69 6.13
629 651 4.830765 GTATGCGGCAGTCGGGCA 62.831 66.667 9.25 0.00 43.60 5.36
630 652 4.529219 TATGCGGCAGTCGGGCAG 62.529 66.667 9.25 0.00 43.60 4.85
635 657 4.008933 GGCAGTCGGGCAGTGTCT 62.009 66.667 0.00 0.00 42.77 3.41
636 658 2.646175 GGCAGTCGGGCAGTGTCTA 61.646 63.158 0.00 0.00 42.77 2.59
725 752 1.650363 GGCGTAACCAAAACAGCGT 59.350 52.632 0.00 0.00 38.86 5.07
736 763 2.793278 AAACAGCGTGTTTCCATTCC 57.207 45.000 9.39 0.00 46.61 3.01
737 764 0.958822 AACAGCGTGTTTCCATTCCC 59.041 50.000 0.00 0.00 37.26 3.97
785 823 2.202707 GGAACCATAACTACTGGGGGT 58.797 52.381 0.00 0.00 38.14 4.95
808 846 1.901948 AGAGGAGTTGACCACGCGA 60.902 57.895 15.93 0.00 0.00 5.87
809 847 1.006571 GAGGAGTTGACCACGCGAA 60.007 57.895 15.93 0.00 0.00 4.70
967 1019 4.101585 TCCTCTCACAAGTCACAATCTGTT 59.898 41.667 0.00 0.00 0.00 3.16
996 1048 4.863925 GCTGACTCGCCTCGCCTC 62.864 72.222 0.00 0.00 0.00 4.70
1011 1065 1.153289 CCTCGCCATGGAGAAGGTG 60.153 63.158 19.39 7.51 36.08 4.00
1147 1207 4.452733 GGGAGACCGTTGGAGCCG 62.453 72.222 0.00 0.00 43.64 5.52
1364 1427 0.595310 GTCTAGATTGGAGCGTCGGC 60.595 60.000 0.00 0.00 40.37 5.54
1406 1472 1.080974 CGTCGGCGTAAGTCTGGTT 60.081 57.895 6.85 0.00 42.28 3.67
1418 1484 3.996150 AGTCTGGTTCTGCAATTTGTG 57.004 42.857 0.00 0.00 0.00 3.33
1437 1503 4.314961 TGTGTGTCAATTTCTCTGCGTAT 58.685 39.130 0.00 0.00 0.00 3.06
1482 1548 1.878775 CCAGTAGTTGGCTTGCAGC 59.121 57.895 0.11 0.11 40.87 5.25
1483 1549 1.499056 CAGTAGTTGGCTTGCAGCG 59.501 57.895 0.00 0.00 43.62 5.18
1484 1550 0.950555 CAGTAGTTGGCTTGCAGCGA 60.951 55.000 0.00 0.00 43.62 4.93
1485 1551 0.250295 AGTAGTTGGCTTGCAGCGAA 60.250 50.000 0.00 2.44 43.62 4.70
1488 1554 3.762293 TTGGCTTGCAGCGAACAT 58.238 50.000 0.00 0.00 43.62 2.71
1489 1555 2.939781 TTGGCTTGCAGCGAACATA 58.060 47.368 0.00 0.00 43.62 2.29
1490 1556 0.804364 TTGGCTTGCAGCGAACATAG 59.196 50.000 0.00 0.00 43.62 2.23
1491 1557 0.321564 TGGCTTGCAGCGAACATAGT 60.322 50.000 0.00 0.00 43.62 2.12
1583 1652 8.549338 TGTTATCCAACATGTAAATACGAACA 57.451 30.769 0.00 1.91 39.75 3.18
1584 1653 8.444715 TGTTATCCAACATGTAAATACGAACAC 58.555 33.333 0.00 0.00 39.75 3.32
1607 1676 0.250901 ATTTGTGTCCTGCTCGCCTT 60.251 50.000 0.00 0.00 0.00 4.35
1612 1681 1.446966 GTCCTGCTCGCCTTCAGTC 60.447 63.158 0.00 0.00 0.00 3.51
1641 1710 5.964958 TTTTCTTCCGATTTTGCTCATCT 57.035 34.783 0.00 0.00 0.00 2.90
1644 1713 1.009078 TCCGATTTTGCTCATCTGCG 58.991 50.000 0.00 0.00 35.36 5.18
1645 1714 0.729116 CCGATTTTGCTCATCTGCGT 59.271 50.000 0.00 0.00 35.36 5.24
1646 1715 1.530441 CCGATTTTGCTCATCTGCGTG 60.530 52.381 0.00 0.00 35.36 5.34
1648 1717 0.813184 ATTTTGCTCATCTGCGTGGG 59.187 50.000 0.00 0.00 35.36 4.61
1649 1718 0.537143 TTTTGCTCATCTGCGTGGGT 60.537 50.000 0.00 0.00 35.36 4.51
1650 1719 0.537143 TTTGCTCATCTGCGTGGGTT 60.537 50.000 0.00 0.00 35.36 4.11
1651 1720 0.537143 TTGCTCATCTGCGTGGGTTT 60.537 50.000 0.00 0.00 35.36 3.27
1652 1721 0.537143 TGCTCATCTGCGTGGGTTTT 60.537 50.000 0.00 0.00 35.36 2.43
1653 1722 0.598065 GCTCATCTGCGTGGGTTTTT 59.402 50.000 0.00 0.00 0.00 1.94
1738 2139 1.335051 GCGGCCTCTTTGTTTCTGTTC 60.335 52.381 0.00 0.00 0.00 3.18
1745 2146 3.620488 TCTTTGTTTCTGTTCCTGCACT 58.380 40.909 0.00 0.00 0.00 4.40
1814 2217 9.958180 TCTTCAAGGAATGTAATTAGAATCACA 57.042 29.630 0.64 0.00 36.07 3.58
1825 2228 6.959639 AATTAGAATCACACTGTTGTTGGT 57.040 33.333 0.00 0.00 31.66 3.67
1834 2237 6.292150 TCACACTGTTGTTGGTATGTTCATA 58.708 36.000 0.00 0.00 31.66 2.15
1839 2242 9.161629 CACTGTTGTTGGTATGTTCATAGAATA 57.838 33.333 0.00 0.00 0.00 1.75
1850 2253 6.791867 TGTTCATAGAATATATCCCCTCCG 57.208 41.667 0.00 0.00 0.00 4.63
1867 2270 3.386726 CCTCCGTCCCATAATGTAAGACA 59.613 47.826 0.00 0.00 0.00 3.41
1872 2275 6.540914 TCCGTCCCATAATGTAAGACATTTTC 59.459 38.462 9.92 0.00 45.80 2.29
1918 2335 3.038788 TCTGCAGCGTGTTAGATTTGA 57.961 42.857 9.47 0.00 0.00 2.69
1937 2354 9.947433 AGATTTGATAAATTTCAGGCAAAATCA 57.053 25.926 15.98 7.63 0.00 2.57
1954 2371 8.490355 GGCAAAATCAGTAAATTTTCAGACAAG 58.510 33.333 0.00 0.00 36.86 3.16
2017 2439 6.770785 TGTTTGTTGAGCCTAGAGTGTAAAAT 59.229 34.615 0.00 0.00 0.00 1.82
2078 2500 1.081094 TCGCTCACATGCATTCTGTG 58.919 50.000 11.86 11.86 44.26 3.66
2084 2506 2.738314 TCACATGCATTCTGTGAGTTCG 59.262 45.455 15.85 0.00 45.97 3.95
2107 2529 5.170625 CGGAACTGTTTGTGTCAATAAAACG 59.829 40.000 0.00 0.00 36.75 3.60
2108 2530 5.457473 GGAACTGTTTGTGTCAATAAAACGG 59.543 40.000 11.57 11.57 42.98 4.44
2109 2531 4.927422 ACTGTTTGTGTCAATAAAACGGG 58.073 39.130 15.21 8.35 42.08 5.28
2150 2573 5.348164 ACTTGCAAAACAAATACACTGGAC 58.652 37.500 0.00 0.00 37.96 4.02
2151 2574 5.127031 ACTTGCAAAACAAATACACTGGACT 59.873 36.000 0.00 0.00 37.96 3.85
2152 2575 6.320164 ACTTGCAAAACAAATACACTGGACTA 59.680 34.615 0.00 0.00 37.96 2.59
2153 2576 6.067263 TGCAAAACAAATACACTGGACTAC 57.933 37.500 0.00 0.00 0.00 2.73
2154 2577 5.825679 TGCAAAACAAATACACTGGACTACT 59.174 36.000 0.00 0.00 0.00 2.57
2155 2578 6.142817 GCAAAACAAATACACTGGACTACTG 58.857 40.000 0.00 0.00 0.00 2.74
2156 2579 6.668323 CAAAACAAATACACTGGACTACTGG 58.332 40.000 0.00 0.00 0.00 4.00
2157 2580 5.818678 AACAAATACACTGGACTACTGGA 57.181 39.130 0.00 0.00 0.00 3.86
2177 2600 0.034059 CTTCCCAACGAGCACTGACT 59.966 55.000 0.00 0.00 0.00 3.41
2187 2610 1.823470 GCACTGACTGGGTGTTGCA 60.823 57.895 0.00 0.00 37.07 4.08
2189 2612 0.464373 CACTGACTGGGTGTTGCAGT 60.464 55.000 0.00 0.00 40.17 4.40
2190 2613 0.255890 ACTGACTGGGTGTTGCAGTT 59.744 50.000 0.00 0.00 36.49 3.16
2191 2614 1.488812 ACTGACTGGGTGTTGCAGTTA 59.511 47.619 0.00 0.00 36.49 2.24
2192 2615 2.092646 ACTGACTGGGTGTTGCAGTTAA 60.093 45.455 0.00 0.00 36.49 2.01
2193 2616 2.549754 CTGACTGGGTGTTGCAGTTAAG 59.450 50.000 0.00 0.00 0.00 1.85
2194 2617 2.171659 TGACTGGGTGTTGCAGTTAAGA 59.828 45.455 0.00 0.00 0.00 2.10
2195 2618 3.181445 TGACTGGGTGTTGCAGTTAAGAT 60.181 43.478 0.00 0.00 0.00 2.40
2196 2619 4.041075 TGACTGGGTGTTGCAGTTAAGATA 59.959 41.667 0.00 0.00 0.00 1.98
2197 2620 4.980573 ACTGGGTGTTGCAGTTAAGATAA 58.019 39.130 0.00 0.00 0.00 1.75
2198 2621 4.760204 ACTGGGTGTTGCAGTTAAGATAAC 59.240 41.667 0.00 0.00 0.00 1.89
2199 2622 4.076394 TGGGTGTTGCAGTTAAGATAACC 58.924 43.478 0.00 0.00 0.00 2.85
2200 2623 3.126343 GGGTGTTGCAGTTAAGATAACCG 59.874 47.826 0.00 0.00 0.00 4.44
2201 2624 3.998341 GGTGTTGCAGTTAAGATAACCGA 59.002 43.478 0.00 0.00 0.00 4.69
2202 2625 4.634443 GGTGTTGCAGTTAAGATAACCGAT 59.366 41.667 0.00 0.00 0.00 4.18
2203 2626 5.123344 GGTGTTGCAGTTAAGATAACCGATT 59.877 40.000 0.00 0.00 0.00 3.34
2204 2627 6.349033 GGTGTTGCAGTTAAGATAACCGATTT 60.349 38.462 0.00 0.00 0.00 2.17
2205 2628 7.081976 GTGTTGCAGTTAAGATAACCGATTTT 58.918 34.615 0.00 0.00 0.00 1.82
2206 2629 7.593644 GTGTTGCAGTTAAGATAACCGATTTTT 59.406 33.333 0.00 0.00 0.00 1.94
2231 2654 1.860484 GCTGCCTGAAGGAAGTGCAC 61.860 60.000 9.40 9.40 43.19 4.57
2256 2679 2.412716 GCACAGTTGCGATCAAATTCGA 60.413 45.455 0.00 0.00 41.62 3.71
2279 5982 6.453659 CGAATCATAAACCAAACAATTTCGGC 60.454 38.462 0.00 0.00 0.00 5.54
2291 5994 4.499183 ACAATTTCGGCAACAACAAAAGA 58.501 34.783 0.00 0.00 0.00 2.52
2316 6019 4.397103 AGCGTAAAAGTGGGTTAATTAGGC 59.603 41.667 0.00 0.00 37.52 3.93
2321 6024 1.214424 AGTGGGTTAATTAGGCCGCAT 59.786 47.619 0.00 0.00 0.00 4.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.137872 CTTGGGCAGCGGCAATGG 62.138 66.667 11.88 0.00 43.71 3.16
20 21 3.376078 ACTTGGGCAGCGGCAATG 61.376 61.111 11.88 3.31 43.71 2.82
21 22 3.376078 CACTTGGGCAGCGGCAAT 61.376 61.111 11.88 0.00 43.71 3.56
22 23 3.866379 ATCACTTGGGCAGCGGCAA 62.866 57.895 11.88 0.00 43.71 4.52
23 24 4.349503 ATCACTTGGGCAGCGGCA 62.350 61.111 11.88 0.00 43.71 5.69
24 25 3.818787 CATCACTTGGGCAGCGGC 61.819 66.667 0.00 0.00 40.13 6.53
25 26 1.442526 GATCATCACTTGGGCAGCGG 61.443 60.000 0.00 0.00 0.00 5.52
26 27 1.442526 GGATCATCACTTGGGCAGCG 61.443 60.000 0.00 0.00 0.00 5.18
27 28 1.442526 CGGATCATCACTTGGGCAGC 61.443 60.000 0.00 0.00 0.00 5.25
28 29 1.442526 GCGGATCATCACTTGGGCAG 61.443 60.000 0.00 0.00 0.00 4.85
29 30 1.451927 GCGGATCATCACTTGGGCA 60.452 57.895 0.00 0.00 0.00 5.36
30 31 1.153086 AGCGGATCATCACTTGGGC 60.153 57.895 0.00 0.00 0.00 5.36
31 32 0.877649 CGAGCGGATCATCACTTGGG 60.878 60.000 0.00 0.00 0.00 4.12
32 33 0.179100 ACGAGCGGATCATCACTTGG 60.179 55.000 0.00 0.00 0.00 3.61
33 34 1.203928 GACGAGCGGATCATCACTTG 58.796 55.000 0.00 0.00 0.00 3.16
34 35 0.248661 CGACGAGCGGATCATCACTT 60.249 55.000 0.00 0.00 36.03 3.16
35 36 1.356979 CGACGAGCGGATCATCACT 59.643 57.895 0.00 0.00 36.03 3.41
36 37 3.909312 CGACGAGCGGATCATCAC 58.091 61.111 0.00 0.00 36.03 3.06
45 46 2.278206 CTCCATCACCGACGAGCG 60.278 66.667 0.00 0.00 40.47 5.03
46 47 1.226717 GACTCCATCACCGACGAGC 60.227 63.158 0.00 0.00 0.00 5.03
47 48 0.099613 CTGACTCCATCACCGACGAG 59.900 60.000 0.00 0.00 32.37 4.18
48 49 1.313091 CCTGACTCCATCACCGACGA 61.313 60.000 0.00 0.00 32.37 4.20
49 50 1.139734 CCTGACTCCATCACCGACG 59.860 63.158 0.00 0.00 32.37 5.12
50 51 0.108615 CACCTGACTCCATCACCGAC 60.109 60.000 0.00 0.00 32.37 4.79
51 52 1.257750 CCACCTGACTCCATCACCGA 61.258 60.000 0.00 0.00 32.37 4.69
52 53 1.219124 CCACCTGACTCCATCACCG 59.781 63.158 0.00 0.00 32.37 4.94
53 54 0.250513 GACCACCTGACTCCATCACC 59.749 60.000 0.00 0.00 32.37 4.02
54 55 1.270907 AGACCACCTGACTCCATCAC 58.729 55.000 0.00 0.00 32.37 3.06
55 56 1.902508 GAAGACCACCTGACTCCATCA 59.097 52.381 0.00 0.00 35.45 3.07
56 57 2.183679 AGAAGACCACCTGACTCCATC 58.816 52.381 0.00 0.00 0.00 3.51
57 58 2.304180 CAAGAAGACCACCTGACTCCAT 59.696 50.000 0.00 0.00 0.00 3.41
58 59 1.694150 CAAGAAGACCACCTGACTCCA 59.306 52.381 0.00 0.00 0.00 3.86
59 60 1.609320 GCAAGAAGACCACCTGACTCC 60.609 57.143 0.00 0.00 0.00 3.85
60 61 1.346068 AGCAAGAAGACCACCTGACTC 59.654 52.381 0.00 0.00 0.00 3.36
61 62 1.346068 GAGCAAGAAGACCACCTGACT 59.654 52.381 0.00 0.00 0.00 3.41
62 63 1.346068 AGAGCAAGAAGACCACCTGAC 59.654 52.381 0.00 0.00 0.00 3.51
63 64 1.620819 GAGAGCAAGAAGACCACCTGA 59.379 52.381 0.00 0.00 0.00 3.86
64 65 1.622811 AGAGAGCAAGAAGACCACCTG 59.377 52.381 0.00 0.00 0.00 4.00
65 66 1.899142 GAGAGAGCAAGAAGACCACCT 59.101 52.381 0.00 0.00 0.00 4.00
66 67 1.066502 GGAGAGAGCAAGAAGACCACC 60.067 57.143 0.00 0.00 0.00 4.61
67 68 1.403514 CGGAGAGAGCAAGAAGACCAC 60.404 57.143 0.00 0.00 0.00 4.16
68 69 0.891373 CGGAGAGAGCAAGAAGACCA 59.109 55.000 0.00 0.00 0.00 4.02
69 70 1.178276 TCGGAGAGAGCAAGAAGACC 58.822 55.000 0.00 0.00 0.00 3.85
70 71 2.223711 GGATCGGAGAGAGCAAGAAGAC 60.224 54.545 0.00 0.00 43.63 3.01
71 72 2.028130 GGATCGGAGAGAGCAAGAAGA 58.972 52.381 0.00 0.00 43.63 2.87
72 73 1.268999 CGGATCGGAGAGAGCAAGAAG 60.269 57.143 0.00 0.00 43.63 2.85
73 74 0.741326 CGGATCGGAGAGAGCAAGAA 59.259 55.000 0.00 0.00 43.63 2.52
74 75 1.729470 GCGGATCGGAGAGAGCAAGA 61.729 60.000 4.16 0.00 43.63 3.02
75 76 1.299773 GCGGATCGGAGAGAGCAAG 60.300 63.158 4.16 0.00 43.63 4.01
76 77 2.786495 GGCGGATCGGAGAGAGCAA 61.786 63.158 4.16 0.00 43.63 3.91
77 78 3.219928 GGCGGATCGGAGAGAGCA 61.220 66.667 4.16 0.00 43.63 4.26
78 79 4.335584 CGGCGGATCGGAGAGAGC 62.336 72.222 4.16 0.00 43.63 4.09
79 80 2.902846 ACGGCGGATCGGAGAGAG 60.903 66.667 13.24 0.00 43.63 3.20
80 81 3.209812 CACGGCGGATCGGAGAGA 61.210 66.667 13.24 0.00 43.63 3.10
81 82 4.933064 GCACGGCGGATCGGAGAG 62.933 72.222 13.24 0.00 43.63 3.20
95 96 0.460987 CTCCCAACTCTCATCGGCAC 60.461 60.000 0.00 0.00 0.00 5.01
96 97 0.614697 TCTCCCAACTCTCATCGGCA 60.615 55.000 0.00 0.00 0.00 5.69
97 98 0.103937 CTCTCCCAACTCTCATCGGC 59.896 60.000 0.00 0.00 0.00 5.54
98 99 1.135915 CACTCTCCCAACTCTCATCGG 59.864 57.143 0.00 0.00 0.00 4.18
99 100 1.135915 CCACTCTCCCAACTCTCATCG 59.864 57.143 0.00 0.00 0.00 3.84
100 101 1.484240 CCCACTCTCCCAACTCTCATC 59.516 57.143 0.00 0.00 0.00 2.92
101 102 1.577736 CCCACTCTCCCAACTCTCAT 58.422 55.000 0.00 0.00 0.00 2.90
102 103 0.545309 CCCCACTCTCCCAACTCTCA 60.545 60.000 0.00 0.00 0.00 3.27
103 104 1.268283 CCCCCACTCTCCCAACTCTC 61.268 65.000 0.00 0.00 0.00 3.20
104 105 1.229658 CCCCCACTCTCCCAACTCT 60.230 63.158 0.00 0.00 0.00 3.24
105 106 1.229529 TCCCCCACTCTCCCAACTC 60.230 63.158 0.00 0.00 0.00 3.01
106 107 1.229658 CTCCCCCACTCTCCCAACT 60.230 63.158 0.00 0.00 0.00 3.16
107 108 1.539124 ACTCCCCCACTCTCCCAAC 60.539 63.158 0.00 0.00 0.00 3.77
108 109 1.538876 CACTCCCCCACTCTCCCAA 60.539 63.158 0.00 0.00 0.00 4.12
109 110 2.122729 CACTCCCCCACTCTCCCA 59.877 66.667 0.00 0.00 0.00 4.37
110 111 2.689034 CCACTCCCCCACTCTCCC 60.689 72.222 0.00 0.00 0.00 4.30
111 112 1.687493 CTCCACTCCCCCACTCTCC 60.687 68.421 0.00 0.00 0.00 3.71
112 113 0.686112 CTCTCCACTCCCCCACTCTC 60.686 65.000 0.00 0.00 0.00 3.20
113 114 1.149782 TCTCTCCACTCCCCCACTCT 61.150 60.000 0.00 0.00 0.00 3.24
114 115 0.686112 CTCTCTCCACTCCCCCACTC 60.686 65.000 0.00 0.00 0.00 3.51
115 116 1.390125 CTCTCTCCACTCCCCCACT 59.610 63.158 0.00 0.00 0.00 4.00
116 117 1.687493 CCTCTCTCCACTCCCCCAC 60.687 68.421 0.00 0.00 0.00 4.61
117 118 2.780693 CCTCTCTCCACTCCCCCA 59.219 66.667 0.00 0.00 0.00 4.96
118 119 2.041405 CCCTCTCTCCACTCCCCC 60.041 72.222 0.00 0.00 0.00 5.40
119 120 1.075600 CTCCCTCTCTCCACTCCCC 60.076 68.421 0.00 0.00 0.00 4.81
120 121 1.760480 GCTCCCTCTCTCCACTCCC 60.760 68.421 0.00 0.00 0.00 4.30
121 122 2.124693 CGCTCCCTCTCTCCACTCC 61.125 68.421 0.00 0.00 0.00 3.85
122 123 2.124693 CCGCTCCCTCTCTCCACTC 61.125 68.421 0.00 0.00 0.00 3.51
123 124 2.043450 CCGCTCCCTCTCTCCACT 60.043 66.667 0.00 0.00 0.00 4.00
124 125 2.363147 ACCGCTCCCTCTCTCCAC 60.363 66.667 0.00 0.00 0.00 4.02
125 126 2.363018 CACCGCTCCCTCTCTCCA 60.363 66.667 0.00 0.00 0.00 3.86
126 127 2.043852 TCACCGCTCCCTCTCTCC 60.044 66.667 0.00 0.00 0.00 3.71
127 128 2.124693 CCTCACCGCTCCCTCTCTC 61.125 68.421 0.00 0.00 0.00 3.20
128 129 2.043450 CCTCACCGCTCCCTCTCT 60.043 66.667 0.00 0.00 0.00 3.10
129 130 2.912987 TAGCCTCACCGCTCCCTCTC 62.913 65.000 0.00 0.00 40.39 3.20
130 131 2.516048 TTAGCCTCACCGCTCCCTCT 62.516 60.000 0.00 0.00 40.39 3.69
131 132 1.403687 ATTAGCCTCACCGCTCCCTC 61.404 60.000 0.00 0.00 40.39 4.30
132 133 0.105658 TATTAGCCTCACCGCTCCCT 60.106 55.000 0.00 0.00 40.39 4.20
133 134 0.756903 TTATTAGCCTCACCGCTCCC 59.243 55.000 0.00 0.00 40.39 4.30
134 135 1.413077 AGTTATTAGCCTCACCGCTCC 59.587 52.381 0.00 0.00 40.39 4.70
135 136 2.100916 TCAGTTATTAGCCTCACCGCTC 59.899 50.000 0.00 0.00 40.39 5.03
136 137 2.108168 TCAGTTATTAGCCTCACCGCT 58.892 47.619 0.00 0.00 43.09 5.52
137 138 2.202566 GTCAGTTATTAGCCTCACCGC 58.797 52.381 0.00 0.00 0.00 5.68
138 139 2.460918 CGTCAGTTATTAGCCTCACCG 58.539 52.381 0.00 0.00 0.00 4.94
139 140 2.822764 CCGTCAGTTATTAGCCTCACC 58.177 52.381 0.00 0.00 0.00 4.02
140 141 2.202566 GCCGTCAGTTATTAGCCTCAC 58.797 52.381 0.00 0.00 0.00 3.51
141 142 1.202371 CGCCGTCAGTTATTAGCCTCA 60.202 52.381 0.00 0.00 0.00 3.86
142 143 1.488527 CGCCGTCAGTTATTAGCCTC 58.511 55.000 0.00 0.00 0.00 4.70
143 144 0.529992 GCGCCGTCAGTTATTAGCCT 60.530 55.000 0.00 0.00 0.00 4.58
144 145 0.529992 AGCGCCGTCAGTTATTAGCC 60.530 55.000 2.29 0.00 0.00 3.93
145 146 1.258197 GAAGCGCCGTCAGTTATTAGC 59.742 52.381 2.29 0.00 0.00 3.09
146 147 1.517276 CGAAGCGCCGTCAGTTATTAG 59.483 52.381 2.29 0.00 0.00 1.73
147 148 1.552226 CGAAGCGCCGTCAGTTATTA 58.448 50.000 2.29 0.00 0.00 0.98
148 149 1.082117 CCGAAGCGCCGTCAGTTATT 61.082 55.000 2.29 0.00 0.00 1.40
149 150 1.518572 CCGAAGCGCCGTCAGTTAT 60.519 57.895 2.29 0.00 0.00 1.89
150 151 2.126228 CCGAAGCGCCGTCAGTTA 60.126 61.111 2.29 0.00 0.00 2.24
153 154 4.735132 TTCCCGAAGCGCCGTCAG 62.735 66.667 2.29 0.00 0.00 3.51
154 155 4.735132 CTTCCCGAAGCGCCGTCA 62.735 66.667 2.29 0.00 0.00 4.35
162 163 2.793946 CCGCATTGCTTCCCGAAG 59.206 61.111 7.12 0.00 41.24 3.79
163 164 3.439540 GCCGCATTGCTTCCCGAA 61.440 61.111 7.12 0.00 0.00 4.30
164 165 4.408821 AGCCGCATTGCTTCCCGA 62.409 61.111 7.12 0.00 38.85 5.14
170 171 1.812922 CTCGAGAAGCCGCATTGCT 60.813 57.895 6.58 0.00 45.43 3.91
171 172 2.705826 CTCGAGAAGCCGCATTGC 59.294 61.111 6.58 0.00 0.00 3.56
172 173 2.705826 GCTCGAGAAGCCGCATTG 59.294 61.111 18.75 0.00 45.92 2.82
234 235 1.224870 GTTTCTCTAGGGCCAGGGC 59.775 63.158 6.18 3.77 41.06 5.19
235 236 0.543749 CAGTTTCTCTAGGGCCAGGG 59.456 60.000 6.18 0.74 0.00 4.45
236 237 0.107459 GCAGTTTCTCTAGGGCCAGG 60.107 60.000 6.18 0.00 0.00 4.45
237 238 0.107459 GGCAGTTTCTCTAGGGCCAG 60.107 60.000 6.18 0.85 41.02 4.85
238 239 1.899437 CGGCAGTTTCTCTAGGGCCA 61.899 60.000 6.18 0.00 41.41 5.36
239 240 1.153349 CGGCAGTTTCTCTAGGGCC 60.153 63.158 0.00 0.00 38.04 5.80
240 241 0.466124 ATCGGCAGTTTCTCTAGGGC 59.534 55.000 0.00 0.00 0.00 5.19
241 242 2.799917 CGAATCGGCAGTTTCTCTAGGG 60.800 54.545 0.00 0.00 0.00 3.53
242 243 2.464865 CGAATCGGCAGTTTCTCTAGG 58.535 52.381 0.00 0.00 0.00 3.02
243 244 2.464865 CCGAATCGGCAGTTTCTCTAG 58.535 52.381 9.39 0.00 41.17 2.43
244 245 1.136305 CCCGAATCGGCAGTTTCTCTA 59.864 52.381 17.50 0.00 46.86 2.43
245 246 0.108138 CCCGAATCGGCAGTTTCTCT 60.108 55.000 17.50 0.00 46.86 3.10
246 247 2.384203 CCCGAATCGGCAGTTTCTC 58.616 57.895 17.50 0.00 46.86 2.87
247 248 4.617875 CCCGAATCGGCAGTTTCT 57.382 55.556 17.50 0.00 46.86 2.52
274 275 3.710722 ACTTCTGGGCCTGGCTCG 61.711 66.667 19.68 11.25 0.00 5.03
275 276 2.045536 CACTTCTGGGCCTGGCTC 60.046 66.667 19.68 16.49 0.00 4.70
276 277 4.357279 GCACTTCTGGGCCTGGCT 62.357 66.667 19.68 0.00 0.00 4.75
277 278 3.875510 AAGCACTTCTGGGCCTGGC 62.876 63.158 11.05 11.05 0.00 4.85
278 279 0.038166 TAAAGCACTTCTGGGCCTGG 59.962 55.000 10.79 0.45 0.00 4.45
279 280 1.815003 CTTAAAGCACTTCTGGGCCTG 59.185 52.381 4.53 4.06 0.00 4.85
280 281 1.272147 CCTTAAAGCACTTCTGGGCCT 60.272 52.381 4.53 0.00 0.00 5.19
281 282 1.177401 CCTTAAAGCACTTCTGGGCC 58.823 55.000 0.00 0.00 0.00 5.80
282 283 1.911057 ACCTTAAAGCACTTCTGGGC 58.089 50.000 0.00 0.00 0.00 5.36
283 284 2.484264 CGAACCTTAAAGCACTTCTGGG 59.516 50.000 0.00 0.00 0.00 4.45
284 285 3.058914 CACGAACCTTAAAGCACTTCTGG 60.059 47.826 0.00 0.00 0.00 3.86
285 286 3.607078 GCACGAACCTTAAAGCACTTCTG 60.607 47.826 0.00 0.00 0.00 3.02
286 287 2.548480 GCACGAACCTTAAAGCACTTCT 59.452 45.455 0.00 0.00 0.00 2.85
287 288 2.350484 GGCACGAACCTTAAAGCACTTC 60.350 50.000 0.00 0.00 0.00 3.01
288 289 1.607148 GGCACGAACCTTAAAGCACTT 59.393 47.619 0.00 0.00 0.00 3.16
289 290 1.235724 GGCACGAACCTTAAAGCACT 58.764 50.000 0.00 0.00 0.00 4.40
290 291 0.948678 TGGCACGAACCTTAAAGCAC 59.051 50.000 0.00 0.00 0.00 4.40
291 292 1.539388 CATGGCACGAACCTTAAAGCA 59.461 47.619 0.00 0.00 0.00 3.91
292 293 1.732405 GCATGGCACGAACCTTAAAGC 60.732 52.381 0.00 0.00 0.00 3.51
293 294 1.465689 CGCATGGCACGAACCTTAAAG 60.466 52.381 0.00 0.00 0.00 1.85
294 295 0.519519 CGCATGGCACGAACCTTAAA 59.480 50.000 0.00 0.00 0.00 1.52
295 296 1.302383 CCGCATGGCACGAACCTTAA 61.302 55.000 0.00 0.00 0.00 1.85
296 297 1.743623 CCGCATGGCACGAACCTTA 60.744 57.895 0.00 0.00 0.00 2.69
297 298 3.055719 CCGCATGGCACGAACCTT 61.056 61.111 0.00 0.00 0.00 3.50
307 308 1.247419 TTACTGTTTGGCCCGCATGG 61.247 55.000 0.00 0.00 37.09 3.66
308 309 0.600557 TTTACTGTTTGGCCCGCATG 59.399 50.000 0.00 0.00 0.00 4.06
309 310 1.272212 CTTTTACTGTTTGGCCCGCAT 59.728 47.619 0.00 0.00 0.00 4.73
310 311 0.671251 CTTTTACTGTTTGGCCCGCA 59.329 50.000 0.00 0.00 0.00 5.69
311 312 0.666274 GCTTTTACTGTTTGGCCCGC 60.666 55.000 0.00 0.00 0.00 6.13
312 313 0.671251 TGCTTTTACTGTTTGGCCCG 59.329 50.000 0.00 0.00 0.00 6.13
313 314 1.601914 CGTGCTTTTACTGTTTGGCCC 60.602 52.381 0.00 0.00 0.00 5.80
314 315 1.766069 CGTGCTTTTACTGTTTGGCC 58.234 50.000 0.00 0.00 0.00 5.36
315 316 1.128513 GCGTGCTTTTACTGTTTGGC 58.871 50.000 0.00 0.00 0.00 4.52
316 317 2.483583 TGCGTGCTTTTACTGTTTGG 57.516 45.000 0.00 0.00 0.00 3.28
317 318 2.216263 GCTTGCGTGCTTTTACTGTTTG 59.784 45.455 0.00 0.00 0.00 2.93
318 319 2.159310 TGCTTGCGTGCTTTTACTGTTT 60.159 40.909 2.56 0.00 0.00 2.83
319 320 1.403679 TGCTTGCGTGCTTTTACTGTT 59.596 42.857 2.56 0.00 0.00 3.16
320 321 1.021202 TGCTTGCGTGCTTTTACTGT 58.979 45.000 2.56 0.00 0.00 3.55
321 322 2.118228 TTGCTTGCGTGCTTTTACTG 57.882 45.000 2.56 0.00 0.00 2.74
322 323 2.159310 TGTTTGCTTGCGTGCTTTTACT 60.159 40.909 2.56 0.00 0.00 2.24
323 324 2.189342 TGTTTGCTTGCGTGCTTTTAC 58.811 42.857 2.56 0.00 0.00 2.01
324 325 2.458951 CTGTTTGCTTGCGTGCTTTTA 58.541 42.857 2.56 0.00 0.00 1.52
325 326 1.280066 CTGTTTGCTTGCGTGCTTTT 58.720 45.000 2.56 0.00 0.00 2.27
326 327 0.528249 CCTGTTTGCTTGCGTGCTTT 60.528 50.000 2.56 0.00 0.00 3.51
327 328 1.066257 CCTGTTTGCTTGCGTGCTT 59.934 52.632 2.56 0.00 0.00 3.91
328 329 2.723746 CCTGTTTGCTTGCGTGCT 59.276 55.556 2.56 0.00 0.00 4.40
329 330 3.032033 GCCTGTTTGCTTGCGTGC 61.032 61.111 0.00 0.00 0.00 5.34
330 331 2.355009 GGCCTGTTTGCTTGCGTG 60.355 61.111 0.00 0.00 0.00 5.34
331 332 3.964875 CGGCCTGTTTGCTTGCGT 61.965 61.111 0.00 0.00 0.00 5.24
332 333 4.705519 CCGGCCTGTTTGCTTGCG 62.706 66.667 0.00 0.00 0.00 4.85
333 334 2.158561 AATCCGGCCTGTTTGCTTGC 62.159 55.000 0.00 0.00 0.00 4.01
334 335 0.109132 GAATCCGGCCTGTTTGCTTG 60.109 55.000 0.00 0.00 0.00 4.01
335 336 0.251341 AGAATCCGGCCTGTTTGCTT 60.251 50.000 0.00 0.00 0.00 3.91
336 337 0.251341 AAGAATCCGGCCTGTTTGCT 60.251 50.000 0.00 0.00 0.00 3.91
337 338 0.171231 GAAGAATCCGGCCTGTTTGC 59.829 55.000 0.00 0.00 0.00 3.68
338 339 0.811281 GGAAGAATCCGGCCTGTTTG 59.189 55.000 0.00 0.00 35.59 2.93
339 340 3.266240 GGAAGAATCCGGCCTGTTT 57.734 52.632 0.00 0.00 35.59 2.83
366 367 1.076559 TGCATGAGGCCCAATCAGG 60.077 57.895 0.00 0.00 43.89 3.86
367 368 1.107538 CCTGCATGAGGCCCAATCAG 61.108 60.000 0.00 8.77 43.89 2.90
368 369 1.076559 CCTGCATGAGGCCCAATCA 60.077 57.895 0.00 0.00 43.89 2.57
369 370 3.851955 CCTGCATGAGGCCCAATC 58.148 61.111 0.00 0.00 43.89 2.67
376 377 0.037975 GTTTGGTTGCCTGCATGAGG 60.038 55.000 0.00 1.51 46.13 3.86
377 378 0.675083 TGTTTGGTTGCCTGCATGAG 59.325 50.000 0.00 0.00 0.00 2.90
378 379 1.068895 CTTGTTTGGTTGCCTGCATGA 59.931 47.619 0.00 0.00 0.00 3.07
379 380 1.504359 CTTGTTTGGTTGCCTGCATG 58.496 50.000 0.00 0.00 0.00 4.06
380 381 0.249996 GCTTGTTTGGTTGCCTGCAT 60.250 50.000 0.00 0.00 0.00 3.96
381 382 1.143620 GCTTGTTTGGTTGCCTGCA 59.856 52.632 0.00 0.00 0.00 4.41
382 383 1.595109 GGCTTGTTTGGTTGCCTGC 60.595 57.895 0.00 0.00 41.92 4.85
383 384 1.300080 CGGCTTGTTTGGTTGCCTG 60.300 57.895 0.00 0.00 42.90 4.85
384 385 0.466555 TACGGCTTGTTTGGTTGCCT 60.467 50.000 0.00 0.00 42.90 4.75
385 386 0.386113 TTACGGCTTGTTTGGTTGCC 59.614 50.000 0.00 0.00 41.76 4.52
386 387 1.066454 AGTTACGGCTTGTTTGGTTGC 59.934 47.619 0.00 0.00 0.00 4.17
387 388 2.098443 ACAGTTACGGCTTGTTTGGTTG 59.902 45.455 0.00 0.00 0.00 3.77
388 389 2.371306 ACAGTTACGGCTTGTTTGGTT 58.629 42.857 0.00 0.00 0.00 3.67
389 390 2.047002 ACAGTTACGGCTTGTTTGGT 57.953 45.000 0.00 0.00 0.00 3.67
390 391 3.304190 GGTTACAGTTACGGCTTGTTTGG 60.304 47.826 0.00 0.00 0.00 3.28
391 392 3.605231 CGGTTACAGTTACGGCTTGTTTG 60.605 47.826 0.00 0.00 0.00 2.93
392 393 2.545106 CGGTTACAGTTACGGCTTGTTT 59.455 45.455 0.00 0.00 0.00 2.83
393 394 2.137523 CGGTTACAGTTACGGCTTGTT 58.862 47.619 0.00 0.00 0.00 2.83
394 395 1.340889 TCGGTTACAGTTACGGCTTGT 59.659 47.619 0.00 0.00 0.00 3.16
395 396 2.068837 TCGGTTACAGTTACGGCTTG 57.931 50.000 0.00 0.00 0.00 4.01
396 397 2.613691 CATCGGTTACAGTTACGGCTT 58.386 47.619 0.00 0.00 0.00 4.35
397 398 1.134907 CCATCGGTTACAGTTACGGCT 60.135 52.381 0.00 0.00 0.00 5.52
398 399 1.283736 CCATCGGTTACAGTTACGGC 58.716 55.000 0.00 0.00 0.00 5.68
399 400 2.264813 CACCATCGGTTACAGTTACGG 58.735 52.381 0.00 0.00 31.02 4.02
400 401 1.657094 GCACCATCGGTTACAGTTACG 59.343 52.381 0.00 0.00 31.02 3.18
401 402 1.657094 CGCACCATCGGTTACAGTTAC 59.343 52.381 0.00 0.00 31.02 2.50
402 403 1.404449 CCGCACCATCGGTTACAGTTA 60.404 52.381 0.00 0.00 44.18 2.24
403 404 0.672401 CCGCACCATCGGTTACAGTT 60.672 55.000 0.00 0.00 44.18 3.16
404 405 1.079405 CCGCACCATCGGTTACAGT 60.079 57.895 0.00 0.00 44.18 3.55
405 406 3.794270 CCGCACCATCGGTTACAG 58.206 61.111 0.00 0.00 44.18 2.74
412 413 2.225068 AGAAAGATACCGCACCATCG 57.775 50.000 0.00 0.00 0.00 3.84
413 414 2.032178 GCAAGAAAGATACCGCACCATC 59.968 50.000 0.00 0.00 0.00 3.51
414 415 2.017049 GCAAGAAAGATACCGCACCAT 58.983 47.619 0.00 0.00 0.00 3.55
415 416 1.448985 GCAAGAAAGATACCGCACCA 58.551 50.000 0.00 0.00 0.00 4.17
416 417 0.373716 CGCAAGAAAGATACCGCACC 59.626 55.000 0.00 0.00 43.02 5.01
417 418 3.877801 CGCAAGAAAGATACCGCAC 57.122 52.632 0.00 0.00 43.02 5.34
430 431 1.535462 AGGGTTTTCGTGAATCGCAAG 59.465 47.619 0.00 0.00 39.67 4.01
438 439 2.546368 CGAATGACAAGGGTTTTCGTGA 59.454 45.455 0.00 0.00 37.77 4.35
469 470 7.201920 CGTAGCCTATATCCAAGCATAACCTAT 60.202 40.741 0.00 0.00 0.00 2.57
476 477 5.683876 AATCGTAGCCTATATCCAAGCAT 57.316 39.130 0.00 0.00 0.00 3.79
491 492 5.568685 TTCAGAGTCTCTCCAAATCGTAG 57.431 43.478 0.00 0.00 0.00 3.51
497 498 2.909006 AGGCATTCAGAGTCTCTCCAAA 59.091 45.455 0.00 0.00 0.00 3.28
498 499 2.235650 CAGGCATTCAGAGTCTCTCCAA 59.764 50.000 0.00 0.00 0.00 3.53
505 506 1.467734 CACTTGCAGGCATTCAGAGTC 59.532 52.381 0.00 0.00 0.00 3.36
506 507 1.531423 CACTTGCAGGCATTCAGAGT 58.469 50.000 0.00 0.00 0.00 3.24
523 524 0.250295 TGTGTTAGGAGTGCCAGCAC 60.250 55.000 14.91 14.91 46.50 4.40
547 548 7.710907 CCTCTATCTGGTAAATTCAAATCGACA 59.289 37.037 0.00 0.00 0.00 4.35
549 550 7.792032 ACCTCTATCTGGTAAATTCAAATCGA 58.208 34.615 0.00 0.00 35.80 3.59
550 551 7.171678 GGACCTCTATCTGGTAAATTCAAATCG 59.828 40.741 0.00 0.00 38.03 3.34
553 575 6.216662 TGGGACCTCTATCTGGTAAATTCAAA 59.783 38.462 0.00 0.00 38.03 2.69
566 588 8.747538 TTTTTAAATTAGCTGGGACCTCTATC 57.252 34.615 0.00 0.00 0.00 2.08
593 615 5.163754 GCATACAGTTGCGACCTCTATTTTT 60.164 40.000 0.00 0.00 32.06 1.94
594 616 4.332819 GCATACAGTTGCGACCTCTATTTT 59.667 41.667 0.00 0.00 32.06 1.82
595 617 3.871594 GCATACAGTTGCGACCTCTATTT 59.128 43.478 0.00 0.00 32.06 1.40
596 618 3.458189 GCATACAGTTGCGACCTCTATT 58.542 45.455 0.00 0.00 32.06 1.73
597 619 3.099267 GCATACAGTTGCGACCTCTAT 57.901 47.619 0.00 0.00 32.06 1.98
598 620 2.579207 GCATACAGTTGCGACCTCTA 57.421 50.000 0.00 0.00 32.06 2.43
599 621 3.442996 GCATACAGTTGCGACCTCT 57.557 52.632 0.00 0.00 32.06 3.69
624 646 0.447801 GTTGCAATAGACACTGCCCG 59.552 55.000 0.59 0.00 37.79 6.13
625 647 1.533625 TGTTGCAATAGACACTGCCC 58.466 50.000 0.59 0.00 37.79 5.36
626 648 2.813754 TCTTGTTGCAATAGACACTGCC 59.186 45.455 0.59 0.00 37.79 4.85
627 649 4.488126 TTCTTGTTGCAATAGACACTGC 57.512 40.909 0.59 0.00 39.09 4.40
628 650 5.820131 TGTTTCTTGTTGCAATAGACACTG 58.180 37.500 21.37 7.04 0.00 3.66
629 651 5.822519 TCTGTTTCTTGTTGCAATAGACACT 59.177 36.000 21.37 0.00 0.00 3.55
630 652 6.017934 TCTCTGTTTCTTGTTGCAATAGACAC 60.018 38.462 17.27 17.27 0.00 3.67
631 653 6.054941 TCTCTGTTTCTTGTTGCAATAGACA 58.945 36.000 0.59 4.46 0.00 3.41
632 654 6.545504 TCTCTGTTTCTTGTTGCAATAGAC 57.454 37.500 0.59 0.00 0.00 2.59
633 655 6.992123 TCTTCTCTGTTTCTTGTTGCAATAGA 59.008 34.615 0.59 6.27 0.00 1.98
634 656 7.194607 TCTTCTCTGTTTCTTGTTGCAATAG 57.805 36.000 0.59 3.66 0.00 1.73
635 657 7.566760 TTCTTCTCTGTTTCTTGTTGCAATA 57.433 32.000 0.59 0.00 0.00 1.90
636 658 6.455360 TTCTTCTCTGTTTCTTGTTGCAAT 57.545 33.333 0.59 0.00 0.00 3.56
689 716 3.880846 GGCAAAGGAGGCGATGCG 61.881 66.667 0.00 0.00 39.66 4.73
709 736 2.461897 AACACGCTGTTTTGGTTACG 57.538 45.000 0.00 0.00 37.26 3.18
731 758 1.153168 CGTGGCAGTAGGGGGAATG 60.153 63.158 0.00 0.00 0.00 2.67
732 759 3.043999 GCGTGGCAGTAGGGGGAAT 62.044 63.158 0.00 0.00 0.00 3.01
733 760 3.712907 GCGTGGCAGTAGGGGGAA 61.713 66.667 0.00 0.00 0.00 3.97
735 762 4.778143 GTGCGTGGCAGTAGGGGG 62.778 72.222 0.00 0.00 40.08 5.40
785 823 0.681733 GTGGTCAACTCCTCTGAGCA 59.318 55.000 0.00 0.84 46.17 4.26
871 910 2.812011 CGCTGGTTGCTTAAAGTAAGGT 59.188 45.455 0.00 0.00 40.11 3.50
967 1019 2.031595 GCGAGTCAGCGAGATGAGATTA 60.032 50.000 0.00 0.00 0.00 1.75
995 1047 2.989639 CCACCTTCTCCATGGCGA 59.010 61.111 6.96 2.70 0.00 5.54
1318 1381 3.775654 CTCCCGAAAGCCGCTCCT 61.776 66.667 0.00 0.00 36.84 3.69
1329 1392 0.549950 AGACCTTATCGACCTCCCGA 59.450 55.000 0.00 0.00 43.16 5.14
1406 1472 5.904941 AGAAATTGACACACAAATTGCAGA 58.095 33.333 0.00 0.00 42.03 4.26
1418 1484 3.857665 TCGATACGCAGAGAAATTGACAC 59.142 43.478 0.00 0.00 0.00 3.67
1437 1503 0.251653 AGCCTACAAGTCCCACTCGA 60.252 55.000 0.00 0.00 0.00 4.04
1475 1541 5.859114 CCTACTATACTATGTTCGCTGCAAG 59.141 44.000 0.00 0.00 0.00 4.01
1476 1542 5.533528 TCCTACTATACTATGTTCGCTGCAA 59.466 40.000 0.00 0.00 0.00 4.08
1477 1543 5.067954 TCCTACTATACTATGTTCGCTGCA 58.932 41.667 0.00 0.00 0.00 4.41
1478 1544 5.624344 TCCTACTATACTATGTTCGCTGC 57.376 43.478 0.00 0.00 0.00 5.25
1479 1545 8.297426 TCAAATCCTACTATACTATGTTCGCTG 58.703 37.037 0.00 0.00 0.00 5.18
1480 1546 8.405418 TCAAATCCTACTATACTATGTTCGCT 57.595 34.615 0.00 0.00 0.00 4.93
1481 1547 9.640963 AATCAAATCCTACTATACTATGTTCGC 57.359 33.333 0.00 0.00 0.00 4.70
1511 1577 4.933400 GCGAACCTTTCTTACAGGATTACA 59.067 41.667 0.00 0.00 35.14 2.41
1512 1578 5.176592 AGCGAACCTTTCTTACAGGATTAC 58.823 41.667 0.00 0.00 35.14 1.89
1515 1581 3.260884 TGAGCGAACCTTTCTTACAGGAT 59.739 43.478 0.00 0.00 35.14 3.24
1583 1652 1.523758 GAGCAGGACACAAATTCCGT 58.476 50.000 0.00 0.00 38.29 4.69
1584 1653 0.443869 CGAGCAGGACACAAATTCCG 59.556 55.000 0.00 0.00 38.29 4.30
1661 1730 1.793532 TCGCATTTCGAAGTAACGCAA 59.206 42.857 9.49 0.00 45.36 4.85
1814 2217 9.905713 ATATTCTATGAACATACCAACAACAGT 57.094 29.630 0.00 0.00 0.00 3.55
1825 2228 8.065627 ACGGAGGGGATATATTCTATGAACATA 58.934 37.037 0.00 0.00 0.00 2.29
1834 2237 2.385765 TGGGACGGAGGGGATATATTCT 59.614 50.000 0.00 0.00 0.00 2.40
1839 2242 3.115390 CATTATGGGACGGAGGGGATAT 58.885 50.000 0.00 0.00 0.00 1.63
1842 2245 0.030501 ACATTATGGGACGGAGGGGA 60.031 55.000 0.00 0.00 0.00 4.81
1843 2246 1.724545 TACATTATGGGACGGAGGGG 58.275 55.000 0.00 0.00 0.00 4.79
1867 2270 6.925165 CCAGTTGCAAATTAGTGTCAGAAAAT 59.075 34.615 0.00 0.00 0.00 1.82
1872 2275 4.836125 ACCAGTTGCAAATTAGTGTCAG 57.164 40.909 0.00 0.00 0.00 3.51
2017 2439 3.515502 AGATCCACAACAATCTCTTCCGA 59.484 43.478 0.00 0.00 0.00 4.55
2078 2500 2.933906 TGACACAAACAGTTCCGAACTC 59.066 45.455 10.98 0.00 40.46 3.01
2084 2506 5.457473 CCGTTTTATTGACACAAACAGTTCC 59.543 40.000 0.00 0.00 31.81 3.62
2107 2529 0.323629 TCATTGAAGTCCGTGGACCC 59.676 55.000 15.28 8.50 45.59 4.46
2108 2530 1.804748 GTTCATTGAAGTCCGTGGACC 59.195 52.381 15.28 2.08 45.59 4.46
2109 2531 2.767505 AGTTCATTGAAGTCCGTGGAC 58.232 47.619 11.14 11.14 44.86 4.02
2154 2577 1.070786 GTGCTCGTTGGGAAGTCCA 59.929 57.895 0.00 0.00 45.43 4.02
2155 2578 0.951040 CAGTGCTCGTTGGGAAGTCC 60.951 60.000 0.00 0.00 0.00 3.85
2156 2579 0.033504 TCAGTGCTCGTTGGGAAGTC 59.966 55.000 0.00 0.00 0.00 3.01
2157 2580 0.249911 GTCAGTGCTCGTTGGGAAGT 60.250 55.000 0.00 0.00 0.00 3.01
2177 2600 4.076394 GGTTATCTTAACTGCAACACCCA 58.924 43.478 0.00 0.00 0.00 4.51
2203 2626 3.030291 TCCTTCAGGCAGCTTTCAAAAA 58.970 40.909 0.00 0.00 34.44 1.94
2204 2627 2.665165 TCCTTCAGGCAGCTTTCAAAA 58.335 42.857 0.00 0.00 34.44 2.44
2205 2628 2.363306 TCCTTCAGGCAGCTTTCAAA 57.637 45.000 0.00 0.00 34.44 2.69
2206 2629 2.233271 CTTCCTTCAGGCAGCTTTCAA 58.767 47.619 0.00 0.00 34.44 2.69
2207 2630 1.143684 ACTTCCTTCAGGCAGCTTTCA 59.856 47.619 0.00 0.00 31.30 2.69
2208 2631 1.538950 CACTTCCTTCAGGCAGCTTTC 59.461 52.381 0.00 0.00 31.30 2.62
2209 2632 1.613836 CACTTCCTTCAGGCAGCTTT 58.386 50.000 0.00 0.00 31.30 3.51
2210 2633 0.892814 GCACTTCCTTCAGGCAGCTT 60.893 55.000 0.00 0.00 31.30 3.74
2211 2634 1.303155 GCACTTCCTTCAGGCAGCT 60.303 57.895 0.00 0.00 31.30 4.24
2212 2635 1.601759 TGCACTTCCTTCAGGCAGC 60.602 57.895 0.00 0.00 31.30 5.25
2213 2636 0.535780 TGTGCACTTCCTTCAGGCAG 60.536 55.000 19.41 0.00 34.78 4.85
2214 2637 0.819259 GTGTGCACTTCCTTCAGGCA 60.819 55.000 19.41 0.00 34.44 4.75
2215 2638 0.536006 AGTGTGCACTTCCTTCAGGC 60.536 55.000 19.41 0.00 38.83 4.85
2216 2639 1.233019 CAGTGTGCACTTCCTTCAGG 58.767 55.000 19.41 0.00 40.20 3.86
2217 2640 0.590195 GCAGTGTGCACTTCCTTCAG 59.410 55.000 19.41 1.47 44.26 3.02
2218 2641 2.706636 GCAGTGTGCACTTCCTTCA 58.293 52.632 19.41 0.00 44.26 3.02
2254 2677 6.453659 GCCGAAATTGTTTGGTTTATGATTCG 60.454 38.462 0.00 0.00 40.17 3.34
2256 2679 6.226787 TGCCGAAATTGTTTGGTTTATGATT 58.773 32.000 0.00 0.00 40.17 2.57
2279 5982 6.021468 CACTTTTACGCTCTCTTTTGTTGTTG 60.021 38.462 0.00 0.00 0.00 3.33
2291 5994 5.878669 CCTAATTAACCCACTTTTACGCTCT 59.121 40.000 0.00 0.00 0.00 4.09
2321 6024 2.857186 TGCAAGGATCAGCACACTTA 57.143 45.000 3.01 0.00 35.51 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.