>input_sequence_83002
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-------------ATGGAGAAGGTGGCCGTGGCAGCGGCGAAGACGGCGCACCCGCCGCCGCCGTCGCCGGGGAAGCCGA
CGACGCTGCTGGACGTGCACGAGGTGGAGTGGATCACGCGGGAGCTGGAGCGGCTGCTCGTCAGGGAGACCGTTGGA---
---GCCGGCGCGGACGCGCGCCGCCGCAGGAAGAGGGCCGAGGCCAAGGCGGC---CAGCCCCGAGGCGCACGCGAAGAA
GGGAGGCTTCCTGGCCGAGCTCCTCGGGAAGCACGCGGCCTCCATATGCGGCGACGGTGCCGTTTCCGGCGCCGTGCTCA
GCGCGCGCCGCGGCCGCGGCAGGAGCGGCTTTCGGGAGGTCGATAAGGTCTAG---------------------------
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>chr6B_1_TraesCS6B01G328100
AACAGAGAAGTGCTTACCGCCATTGCCGCTGCCCAAGTGATGATCCGCTCGTCGGTGATGGAGTCAGGTGGTCTTCTTGC
TCTCTCCGATCCGCCGTGCCGATGAGAGTTGGGAGAGTGGGGGAGTGGAGAGAGGGAGCGGTGAGGCTAATAACTGACGG
CGCTTCGGGAAGCAATGCGGCTTCTCGAGCGTGGCCGCGCGCGTGCAACCGCCGCCGCCCACGTGCACCGCTCGGCCCTG
GCCCTAGAGAAACTGCCGATTCGGGCGTTCCCGGCGAGCCAGGCCCAGAAGTGCTTTAAGGTTCGTGCCATGCGGGCCAA
ACAGTAAAAGCACGCAAGCAAACAGGCCGGATTCTTCCCGCGCGGGCCTGATTGGGCCTCATGCAGGCAACCAAACAAGC
CGTAACTGTAACCGATGGTGCGGTATCTTTCTTGCGATTCACGAAAACCCTTGTCATTCGAATTTGAATATAGGTTATGC
TTGGATATAGGCTACGATTTGGAGAGACTCTGAATGCCTGCAAGTGCTGGCACTCCTAACACATAGGTGTC---------
------------GATTTGAATTTACCAGATAGAGGTCCCAGCTAATTTAAAAAAAAAAATAGAGGTCGCAACTGTATGCG
GCAGTCGGGCAGTGTCTATTGCAACAAGAAACAGAGAAGAAACAGGCGA-----GGAGCACGGGCAGGAGCCAACCGCAT
CGCCTCCTTTGCCGGCGTAACCAAAACAGCGTGTTTCCATTCCCC-------CTACTGCCACGCACGCACGACCCGCGGG
AACCATAACTAC----TGGGGGTGCTCAGAGGAGTTGACCACGCGAACTCGCGTACTCGCGCGGCATCAATGCCGCCGGC
CCCACGCCGTCAGCCTCTGCGCCCCA-TCACCTTACTTTAAGCAACCAGCGGGCATGCCATCCTCGCCTCCTCTCCTCCA
CCGACTTGACTTCT------CCTCCTCCTCCTCTCACAAGTCACAATCT-------GTTAATCTCATCTCGCTGACTCGC
CTCGCCTCG--CCATGGAGAAGGTGGCCGTGGCAGCGGCGAAGACGGCGCACCCGCCGCCGCCGTCGCCGGGGAAGCCGA
CGACGCTGCTGGACGTGCACGAGGTGGAGTGGATCACGCGGGAGCTGGAGCGGCTGCTCGTCAGGGAGACCGTTGGA---
---GCCGGCGCGGACGCGCGCCGCCGCAGGAAGAGGGCCGAGGCCAAGGCGGC---CAGCCCCGAGGCGCACGCGAAGAA
GGGAGGCTTCCTGGCCGAGCTCCTCGGGAAGCACGCGGCCTCCATATGCGGCGACGGTGCCGTTTCCGGCGCCGTGCTCA
GCGCGCGCCGCGGCCGCGGCAGGAGCGGCTTTCGGGAGGTCGATAAGGTCTAGATTGGAGCGTCGGCACGGTGTGCGTGT
GACAC---GGTATCGTCGGCGTAAGTCTGGTTCTGCAATTTGTGTGTCAATTTCTCTGCGTATCGAGTGGGACTTGTAGG
CTGGAATTGCCAGTAGTTGGCTTGCAGCGAACATAGTATAGTAGGATTTGATTACTTGTAATCCTGTAAGAAAGGTTCGC
TCACTTTCATCCTGCACTTTTCCTGTTAT---CCAACATGTAAATACGAACACGGAATTTGTGTCCTGCTCGCCTTCAGT
CTCTATTTTTTCTTCCGATTTTGCTCATCTGCGTGGGTTTTTTTTTTTTTTGCGTTACTTCGAAATGCGACTGAAATTTA
ATG-----------------------------------------------------------------------------
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------TAAAATTTTCAGACAAATCAATAGCGGCCTCTT-----------------------------------------
------------------------------------------------TGTTTCTGTTCCTGCACTGAGTTGCCTGCCCG
ATAGCAACGTGGTGCGCTGTCGTACGCATCTTCAAGGAATGT--AATTAGAATCACACTGTTGTTGGTATGTTCATAGAA
TATATCCCCTCCGTCCCATAATGTAAGACATTTTCTGACAC-----------TAATTTGCAACTGGTAAATTCTGCAG--
-CGTGTTAGATTTGATAAATTTCAGGCAAAATCAGTAAATTTTCAGACAAG-----AAAAAATACCTCTGCTGATGCTGC
TAGTACTGCCCTTTGTTTGTTGAGCCTAGAGTGTAAAATCGGAAGAGATTGTTGTGGATCTGCCGCAGTTGTTGCTGTGA
TCGCTCACATGCATTCTGTGAGTTCGGAACTGTTTGTGTCAATAAAACGGG-TCCACGGACTTCAATGAACTTGCAAAAC
AAATACACTGGACTACTGGACTTCCCAACGAGCACTGACTGGGTGTTGCAGTTAAGATAACCGATTTTTTGAAAGCTGCC
TGAAGGAAGTGCACACTGCACAGTTGCGATCAAATTCGA-----------------------------------------
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---------------------------------------ATCATAAACCAAACAATTTCGGCAACAACAAAAGAGAGCGT
AAAAGTGGGTTAATTAGGCCGCATAAGTGTGCTGATCCTTGCAAATTCGAAAA
>chr6D_432
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-------------------------------TTGCGATCCACGAAAACCCTTGTCATTCAAATTTGAATGTAGGTTCTGC
TTGGATATAGGATACGAACTGGAGA--CTCTGAATGCCTGCAAATGCTGGCACTCCTCGCACATAGGGGGTACGGACGTT
AGGTCTGGATTTGAATTGAATTTACCAAACG------------------------------GAGGTCGCAGCTGTACGCG
GCAGTGTCTATTGCAAC-TTGCAACAAGAAACAGAGAAGAAACAGGCGATGCGAGGAGCACGGGCAGGAGCCAACTA---
CGCCTCCTTTGCCGGTGTAACTAAAACAGCGCATTTC-------C-------CTACTGCCACGCACGCACGACCCGCGGG
AACCATAACTAG----TGGGGGAGCTCAGAGGGGTTGACCACGCGTCCTCACGTACTCGCGCGGCATGAATGCCGCCGGC
CCCACGCCGTCAGCCTCTGCGCCCCA-TCGCCTTACTTTAAGCAACCAGCGGGCCTGCCATCCTCGCCTCCTCTCCTCCA
CCGACTTGACTTCTTCTCCTCCTCCTCCTCCTCTCACAAGTCACAACTCACAACCCGTCAATCTCATCTCACTGACTCGC
CTGTCCAATCTCCATGGAGAAGGTTGCCGTGGCAGCGGCGAAGACGGCGCAC---CCGCCGCCGTCGCCGGGGAAGCCGA
CGACGCTGCTGGACGTGCACGAGGTGGAGTGGATCACGCGGGAGCTGGAGCGGCTGCTCGTCAGGGAGACCGTTGGCGCG
GGCGCCCGCGCGGACGCGCGCCGCCGCCGGAAGAGGGCCGAGGCGGGGGTTTCCAGCAGCCCCGAGGCGCACGCGAAGAA
GGGAGGCTTCCTGGCCGAGCTCCTCGGGAAGCACGCGGCCTCCATATGCGGCGACGGT------------GCCGTGGTCA
GCGGGCGCCGGCGCCGCGGCCGGAGCGGCTTCCGGGAGGTCGATAAGGTCTAGATTGGAGCGTCGGTACGGTGTACGTAT
GGCAAGTAGGTATCGTCGGCGTAAGTCTGGTACTGCAATTTGTCTGTCAATTTCTCTGCGTAGCGAGTGGGGCTTGTAGG
CTGGAATTGCCAGCGAAC-------------------ATAGTAGGATTTGATTACTACTACTCCTGTAAGAAAGGTTCGC
TCACTTTTATCCTGCACTTTTCCTGTTATTATCCAACATGTAAATACGAACGTGGAATTTGTGTCCTGCTCGCCTGCGGT
GCCTATTTTTGCTTCCGATTTTGCTGATCAGCTGCGTG----TTTTTTTCTGAGTTACTTCGAAATGCGACTGAAATTTA
ATAAAATTTTCAGACAAATTTCTGTTTCTGCACGATTTGCCTGCCCGATAGTAATGCGACTGAAATTTAATAAAATTTTC
AGACAAATCAATAGCGGCCTCTTTTGTTTCTGTTTCTCCACGAGTTGCCTGCCCGATAGTAATGCGACTGAAATTTAATA
AAATTTTCAGACAAATCAATAGCGGCCTCTTTTGTTTCTGTTTCTCCACGAGTTGCCTGCCCGATAGCAATGCGATTGAA
ATTTAATAAAATTTTCAGACAAATCAATAGCGGCCTCTTTTGTTTCTTTTTCTGCACGAGTTGCTTGCCCGATAGCAATG
CGACTGAAATTTAATAAATTTTTAAGACAAATCAATAGCGGCTTCTTTTGTTTCTGTTTCTGCAC-GAGTTGCCTGCCCG
ATAGCAACGTGGTGCGCTGTCGTACGCATCTTCAAGGAATGT--AATTAGAATCACGCTGTTGTTGGCATGTTCATGAAA
TGCACTCCCTCCATCCCATAATGTAAGACGTTTTTTGACATGATGAAGGAAGTAATTTGCAACTGGTAAATTCTGCAG--
-CGTGTTAGATTTGGTAAATTTCAGGCAAAACCGGTAAATTTTCAGCAAG--------AAAAACCCTCTGCTGATGTTGC
TAGTACTGCCCTTTGTGTGTTGAGCCTAGAGTGTAAAA-CGGAAGAGATTGTTG--------------------------
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>chr6A_601
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-------------------------------------------------------------GAGGTCGCAGCTGCACGCG
GCAGTGTCTGTTGCAAC-TTGCAACAAGAAACAGAGAAGAAACAGGCGGTGCGAGGAGCACGGGCAGGAACCAACGG---
CGCCTCCTTTGCCGGTGTAACCAAAACAGCGAGTTTC-------CTTCCCCTCTACTGCCACGCACGCACGACCCGCGGG
AACCATAACTACGTACTGGGGGAGCTCAGAGGAGTTGACCACGCGTCCTCGCGCGGCATGAT--CATGAATGCCGCCGGC
CCCACGCCGTCAGCCTCTGCGCCCCCGTCGCCTTACTTTAAGCAACCGGCAGGCATGCCATCCTCGCCTCCTCTCCTCCA
CCGACTTGACTTC--------------CTCCTCTCACAAGCCACAATCT-------GTCAATCTCATCTCGCTGACTCGC
CTCGCCATGGAG-ATGGAGAA---------GGCAGCGGCGAAGACGGCGCA------------------------GCCGA
CGACGCTGCTGTACGTGCACGAGGTGGAGTGGATCACGCGGGAGCTGGAGCGGCTGCTCGGCAGGGAGACCGTTGGCGCC
GGCGCCCGCGCGGACGCGCGCCGCCGCCGGAAGAGGGCCGAGGCCGATGCGGCCAGCAGCCCCGAGGCGCGCGCGAAGAA
GGGAGGCTTCCTGGCCGAGCTCCTCGGGAACCACGCGGCCTCCATATGCGGCGACGGT------------GCCGTGGTCA
GCGCGCGCCGCCGCCGCGGCCGCAGCGGCTTCCGGGAGGTCGATAAGGTCTAGATTGGAGCGTCGGTACGGTGTGCGTTT
GACAC---GGTATCGTCGGCGCAAGTCTGGTCCTTCGATTTGTCTGTCAATTTCTCTGCGTAGCCAGTGGGACTTATAGG
CTGGAATTGCCAGCGAAC-------------------ATAGTAGGATTTGATTACTGCTCCTCCTGTAA-----GTTCGC
TCACTTTCATCCTGCACTTTTCCTGTTA---TCCAACATGTAAATACGAACGTGGAATTTGTGTCCTGCTCGCCTGCACT
GTCTATTTTTTCAGCCTCTTTT--------------------TTTTGGTGTGTGGTACTTAGAAATGCGACTGAAATTTA
ATAAAATTT----------------------------------------------------------------------C
AGACAAATCAGTAGCGGCCTCTTTTGTTTCTGTCTCT-------------------------------------------
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-------------------------------------------------------------GCAC-GAGTTGCCTGCCCG
ATAGCAACGTGGTGCGCTGTCGCACGCATCTTCAAGGAATGTGTAATTAGAATCACGCTGTTGTTGGCATGTTCATGGAA
TGT----------------------------------ACTC-----------TAATTTGCAACCGCTAAATTCTGCAGTA
GCGTGTTAGATTTGGTAAATTTCAAGCAAAACCGGTAAATTTTCAGACAATAATAAAAAAAATACCTCTGCTGATGCTGC
TAGTACTGCCCTTTGTTTGCTGAGCCTAGAGTGTAAAA-CGGAAGATATTGTTGTGGATCTGCCGCAGTTGTTGCTGTGA
TCGCTCACATGCATTCTGTTAGTTCAGAACTGTTTGTGTCAATAAAACCTCTTCCACGGACTTCAATGAACTTGCAAAAC
AAATACACTGGA--------CTTCCCAACGAGCACTGACCGGGTGTTGCCG-----------------------------
-GAAGGAAGTGCATACTGCACAGTTGCGATCAAATTTGGATGAGGTAATATCACCGGAAGTCATAGAACTTATGGTTGAT
GTTTAGTTTGATGCTAGAACTTTGAAATACGGATTTACAGTCACTTAACTTGACATCACATACAAATACAGTCACAAAAT
ACGCATACGAACTTATCAGGGTGTATGGCCTCACCTCTCAGTGAGTGATGGCGCATGACCGACTCATTTTTGCACAAAAC
ACACTCAGGTAATGTTTGATAGTAAAGTATTGTAAAAACTGAAGTATCAATAAACTACAGTAATTTTGCATGTAGGTATA
ATATACCGTGGTTTTGAGAAAACAGAGTATTTTGTAGTATTGACAATACACAGGACATGTTTGACGCAGCGACGTAAAAT
CAGTTGCAGCGTTAACAGTGCAAACACGTCTGCTTTTCCAGCGAAGCTAGCCGTTGCATGCAACAAAGTGATTGGCCAAA
GAACGGCCATGCACATGGCCATAGAGCAGCCTGTTACCATCAGCATGCATAAGAAAGAAAGCTTGCACTGAGAACTCCGC
TGAACGGCCGTGACCAAAAAAATCACTCGGCAGCACCGCGTAGCCGGCGGCACCAAGCGGCAGAGCTGCACGAGGACTGG
CTGCTTGGCCTCCTTCCGCATCTACGGCGGAGCTGCACGTGTAGCAGATGGGACAACGACGAGCCATGGAGAGAGGTCTA
CATGCAACAGGAGTGAGTTGTCCATCCTAACACGAGCGTAGCTGAACGACGCGCGGCGGCATCTACAAAGAGCACAGGGC
GGCGGCCGTGAATAATTTTTGTAGAGGGAGGCGAGTCATCAGCAGGGAAGAAGTTGACGACGTGCGACGTCGTTCTTTTC
GTCTGCTCTGTTTTTAATAAACAGGTTCTGGGTTCTTTTTATAAAACAGAGAAAAACAGTGTTTTGACAAATAGTGTAGT
ATTAAAATCACAGTTTATAGGGACAACCAAACAGCTCATTGTAAATAAAACTGTGGTAATCTGAAAAACTGTAATATTCG
TGAAATACATAGAAAATACTTTGCTATCAAACAGGGCCTCACTTTTTTTATTTGCAAAAAAAGCCGACCACTGTACTGCA
TATAGGTACGAAAATTAACACAAAAATAGGGGACCCCCGAGTCGAACCGGCGACCGATGTTCAAGACGCAAGCCACTTTA
GGCAACTACCCTTCCCTGTTCGCACATCAAGCACGGATAGCAAACTTTAGATGTATTGAACGTGGAGCTTGTTTTCTCTT
GAGGTGGGCGTGGAGCTTAAATGACATTCATTTTTTCACATCTACTATGAGCAGTGGGTGTACATCTGCAGCCCATTTAA
GCTTTTACCCGCCTTTTTTTTTACCTGAAACATGTAGAGGCTCGCACTGCTACAGTTGATTCCATCAAGCAGGACGAGAA
GCCATGTTCAGGTAGGTTGAACGCATTAAGATCAACATAAAATGCCATCAACACGGTACTTACAAGTGGAGCAATAAAAC
AATGAGAGTGATACTAACTGCACATTAGGACGGTTTGACAGAGCGGTAAAACTGAGTGACATCTCAACAATCAAGCCCCT
ATGCATGGAAATTTGTTCTTGCTTCCTCTGTCACTCTGGCTGGCTGTACACACAAGATGCATATCTTTTGGGAAAAAAAG
GAATGTTCTAAGAATATTATACCCACTTTTACTCATGACTTATATTAAATAAATTATATAATTTAAATATTAGACACAAT
TGAATATTCATATCAACATTTTTCATTTTAAATTTATGAATATTTTTAATTATACAAACATTGAACTATACAAATGTGAG
AATAGTTACTGAAATGTTTGTATAATTAAAATAATATTTTGAATTCTAATTTTGGAAATAATTGTGTTATTTTAAATGTA
CAAACATTTTATAATACATAAATATTATTTAAATATATTAATATTTTAAATATTACATGAAATTTTTAACACATGAATAT
TTAGATGTCATTTTTGTTACTGAAATTATAATTGACATACTATCTACAATTTTTTAGTATATTAAGACTACTAATTCATT
GTAGACGTGTATATGTGCAGGTTGTAGTGACTAGAACGTCTTGTGTGCTAACCTTTGGTTGTTGTTTGTTTGAGAGCTGG
TGGCCCGAAAAGTCCATTCTGCACCCGAGCTCATATGCTCCCGCATGAACAGTAAAATCGAAAAAAAATTCAAAAAAAAT
TCAAAAAATTCTATTTTTTTTAGAGAAACATTGACAAAAGTTCTAAGTGCCTGCAAAAATTCATCATGAAATCACATTCC
TGTAAGGCGTGGTAAAAAAAACAAATTCAGTGATTCAAAATGCATTTGAAAGTAGCTTTTTCAGAGTACTATTTTTGTTT
TTTTTTTGCCACGCCTTCTAGGAATGTGATTTCATGACGAATTTTTGCAGGCACTTAGAACTTTTGTCAATGTTTCTCTC
AAAAAAAATTTGGAATTTTTTGAATTTTTTTCGATTTTACTGTTCATGCGGGAGCATATGAGCTCGGGTGCAGATTAGCC
GCGTCCTGGCCACACTTTTTCCTGTTAATTTTCACTGTGTAATGACAGGTGGGACCCACTGTTGATGGACGTGAAAAATA
AATGTCATTTAAGTTCCGCTTTCAATACATCTAAGCTTTGCTATCAGGCTGGTCATAGTGGGGAGTAACTTAGACTAGTA
ACATACATATGCTACTAGTCTATGTTACTACCTTCATAGTGGGTAGTGTCATAGGTGTGGTAACATAGTTGCCTTCATTT
AACTTTGTAGACTCATTATGCATTGGAAACCGCTATGTGATGGTAACATATTATGTTACTCTATTTGCCTCTCTCCTCAT
TAACTACTTGCCACATCATCATTTTTGCTTATGTGGCATCTATGTTACTACCTATGTTACTCCCACTATGACCAGCCTCA
GTAGTTGACATGCGGACGTGAAGAGTGGTTTGGCATGAGTGGCTTGTGCTGTAAACATTGGTAGCTGGTTCGACTCCAGC
CTCACCTATTTGTTGTCTTAATTTTCGTGCCTATATGCAGTACTGTGGATGTCTTTTTCTGCAAATAAAAAAGTGTGAGG
GTGTTTTGTACAAAAATGAGTGAGCAGAGGGCCACCACTCAGTGACCGGTGGGGCCATATGTTCGCTTGCTTATTTTGTG
ACCGTATTTGCACGCAATGTCAAGTTAAGTGACCACAAATCTGTATTTTCAAACTTCTAGCACCAAACTGAACATCGAGC
ACAAGTTTTATGACTTCCGGTAATATTACCTCAATCAGGATCATAAACCAAACAATTTCGGAAACAACAAAAGGGAGCGT
AAAAGTGGGTTAATTAGGTCGCAGAAGTGTGCTGATCCTTGCAAATTCGAAAA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S--------------------S---------S------S---
-----------S-----SS------SS----------------S-------------SS--------S-SS---------
--------------S------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S-----S---
-----SSSSSSSSSSSSS---------------------------------------------------------S-SSS
---------------S---------------S-----SSSSSSS------------------------------------
----------------------S----------------------SS--------------------S------------
-----------------------------S--------------------------------------------------
----------------------------------------------------------S---------------------
------SS----------------S---------------------------SSS-------------------------
----------------------------------------------------------------------------S---
------S--------------------S-----------------S----------------------------------
----------------------------------------------------------SSSSSSSSSSSS------S---
-----------S--------S----------S----------------------------------S-----------S-
-------------------------------S-----------S------------------S-----------------
-------------SSSSSSSSSSSSSSSSSSSSSSSS-------------------SS--S-------------------
---------------------------------------------------SS----------------------S----
S------------------------S---S--SSS-SSSSSS-------S--S---------------------------
--S-----------------------------------------------------------------------------
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----------------------------------------------------------S------S--------------
--------------------------------------------------------S----------S--------S---
-S--SS------S----------------S----S---------------------------------------------
--------------S----------------S-S----------------S-----------------------------
--------------------------------------S-----------------------------------------
-------------------S-----S----------------------SSS-----------------------------
------------SSSSSSSS-------------------S---------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S------------S----------------------S-S-----------------------------------------
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-------------------------------------------------------------S-----------S------
------------------S----S-----------------------------
>forward_21
-ACAGAGAAGTGCTTACCGCC-----------------------------------------------------------
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>reverse_2245
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----TCCCCTCCGTCCCATAATGT--------------------------------------------------------
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