Multiple sequence alignment - TraesCS6B01G327200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G327200 chr6B 100.000 2889 0 0 1 2889 576828254 576825366 0.000000e+00 5336.0
1 TraesCS6B01G327200 chr6A 90.701 699 45 10 1530 2216 531050478 531049788 0.000000e+00 913.0
2 TraesCS6B01G327200 chr6A 85.827 635 71 14 1 627 531071934 531071311 0.000000e+00 656.0
3 TraesCS6B01G327200 chr6A 88.121 463 30 9 760 1220 531050960 531050521 7.090000e-146 527.0
4 TraesCS6B01G327200 chr6A 81.930 487 63 12 2420 2889 531049555 531049077 3.490000e-104 388.0
5 TraesCS6B01G327200 chr6D 89.319 749 48 18 1526 2247 386186563 386185820 0.000000e+00 911.0
6 TraesCS6B01G327200 chr6D 89.512 410 34 6 763 1171 386187049 386186648 7.140000e-141 510.0
7 TraesCS6B01G327200 chr6D 86.350 337 35 7 2558 2889 386185628 386185298 9.840000e-95 357.0
8 TraesCS6B01G327200 chr1D 74.432 528 101 19 21 533 31896098 31896606 2.270000e-46 196.0
9 TraesCS6B01G327200 chr1D 84.426 122 18 1 2390 2510 322270223 322270102 5.060000e-23 119.0
10 TraesCS6B01G327200 chr1D 97.872 47 1 0 692 738 415209024 415209070 6.630000e-12 82.4
11 TraesCS6B01G327200 chr7A 79.253 241 33 11 317 543 522990653 522990416 4.990000e-33 152.0
12 TraesCS6B01G327200 chr7A 96.000 50 2 0 689 738 652007159 652007110 6.630000e-12 82.4
13 TraesCS6B01G327200 chr5A 83.036 112 17 2 2371 2480 705825370 705825481 1.830000e-17 100.0
14 TraesCS6B01G327200 chr4B 82.143 112 18 2 2371 2480 665857790 665857901 8.520000e-16 95.3
15 TraesCS6B01G327200 chr4B 96.000 50 2 0 689 738 70061943 70061992 6.630000e-12 82.4
16 TraesCS6B01G327200 chr4B 91.071 56 4 1 683 738 649708583 649708529 1.110000e-09 75.0
17 TraesCS6B01G327200 chr2B 87.671 73 7 2 693 763 15778061 15777989 1.840000e-12 84.2
18 TraesCS6B01G327200 chr2B 92.453 53 4 0 686 738 442306493 442306545 3.090000e-10 76.8
19 TraesCS6B01G327200 chrUn 97.826 46 1 0 693 738 162316494 162316539 2.390000e-11 80.5
20 TraesCS6B01G327200 chr3D 92.593 54 4 0 685 738 384578292 384578345 8.580000e-11 78.7
21 TraesCS6B01G327200 chr3D 93.182 44 3 0 689 732 587512945 587512988 6.680000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G327200 chr6B 576825366 576828254 2888 True 5336.000000 5336 100.000000 1 2889 1 chr6B.!!$R1 2888
1 TraesCS6B01G327200 chr6A 531071311 531071934 623 True 656.000000 656 85.827000 1 627 1 chr6A.!!$R1 626
2 TraesCS6B01G327200 chr6A 531049077 531050960 1883 True 609.333333 913 86.917333 760 2889 3 chr6A.!!$R2 2129
3 TraesCS6B01G327200 chr6D 386185298 386187049 1751 True 592.666667 911 88.393667 763 2889 3 chr6D.!!$R1 2126

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
550 559 0.183971 TGCTGGTTCCTCGGGAAAAA 59.816 50.0 6.91 0.0 43.86 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2303 2350 0.238817 GTGGAGCTACTATCGCGAGG 59.761 60.0 16.66 12.65 0.0 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.137675 TGCATGAGAGAATCCTCACGG 59.862 52.381 0.00 2.32 44.93 4.94
22 23 1.137872 GCATGAGAGAATCCTCACGGT 59.862 52.381 0.00 0.00 44.93 4.83
32 33 2.863401 TCCTCACGGTCGATATGTTG 57.137 50.000 0.00 0.00 0.00 3.33
35 36 0.821517 TCACGGTCGATATGTTGGCT 59.178 50.000 0.00 0.00 0.00 4.75
38 39 3.069016 TCACGGTCGATATGTTGGCTATT 59.931 43.478 0.00 0.00 0.00 1.73
58 59 4.365111 TGGCTGGCCACATGACCC 62.365 66.667 10.55 0.00 41.89 4.46
59 60 4.365111 GGCTGGCCACATGACCCA 62.365 66.667 0.00 1.47 35.81 4.51
68 69 1.100510 CACATGACCCAAGATGCCAG 58.899 55.000 0.00 0.00 0.00 4.85
90 91 0.250295 TTGTCTCCAGGCTCCAAACG 60.250 55.000 0.00 0.00 0.00 3.60
91 92 1.376037 GTCTCCAGGCTCCAAACGG 60.376 63.158 0.00 0.00 0.00 4.44
102 103 1.674322 CCAAACGGCGACCCATCTT 60.674 57.895 16.62 0.00 0.00 2.40
109 110 1.508088 GCGACCCATCTTTGCAAGG 59.492 57.895 1.35 1.35 0.00 3.61
128 129 1.078143 ATTGCCCCTTCTCAGTCGC 60.078 57.895 0.00 0.00 0.00 5.19
131 132 2.125350 CCCCTTCTCAGTCGCTGC 60.125 66.667 2.45 0.00 0.00 5.25
152 153 3.104512 CCTAGAACCATGTGTCCACCTA 58.895 50.000 0.00 0.00 0.00 3.08
154 155 2.902608 AGAACCATGTGTCCACCTAGA 58.097 47.619 0.00 0.00 0.00 2.43
170 171 2.545952 CCTAGACACACAACGACTTGCT 60.546 50.000 0.00 0.00 0.00 3.91
196 197 1.139058 CTGGTTTCCTATCGGTCCCTG 59.861 57.143 0.00 0.00 0.00 4.45
197 198 0.468648 GGTTTCCTATCGGTCCCTGG 59.531 60.000 0.00 0.00 0.00 4.45
210 211 1.134371 GTCCCTGGTAATGTCTCCTGC 60.134 57.143 0.00 0.00 0.00 4.85
211 212 1.207791 CCCTGGTAATGTCTCCTGCT 58.792 55.000 0.00 0.00 0.00 4.24
212 213 1.134280 CCCTGGTAATGTCTCCTGCTG 60.134 57.143 0.00 0.00 0.00 4.41
213 214 1.833630 CCTGGTAATGTCTCCTGCTGA 59.166 52.381 0.00 0.00 0.00 4.26
229 230 2.141517 GCTGATGGGATGAGTTGATCG 58.858 52.381 0.00 0.00 0.00 3.69
233 234 2.488204 TGGGATGAGTTGATCGCAAA 57.512 45.000 0.00 0.00 41.04 3.68
234 235 2.789213 TGGGATGAGTTGATCGCAAAA 58.211 42.857 0.00 0.00 41.04 2.44
264 265 3.349006 GGGCCGCATGCGTCATAG 61.349 66.667 35.55 22.13 42.61 2.23
265 266 2.280119 GGCCGCATGCGTCATAGA 60.280 61.111 35.55 0.00 42.61 1.98
272 273 0.465705 CATGCGTCATAGAGGTGGGT 59.534 55.000 0.00 0.00 0.00 4.51
281 282 5.710567 CGTCATAGAGGTGGGTTGATCTATA 59.289 44.000 0.00 0.00 34.11 1.31
283 284 6.017192 TCATAGAGGTGGGTTGATCTATACC 58.983 44.000 0.00 0.00 34.11 2.73
289 290 4.163458 GGTGGGTTGATCTATACCTTGTGA 59.837 45.833 10.63 0.00 34.75 3.58
291 292 6.177610 GTGGGTTGATCTATACCTTGTGAAA 58.822 40.000 10.63 0.00 34.75 2.69
292 293 6.093633 GTGGGTTGATCTATACCTTGTGAAAC 59.906 42.308 10.63 0.00 34.75 2.78
307 308 4.144297 TGTGAAACATTTGGAAGGAGAGG 58.856 43.478 0.00 0.00 45.67 3.69
308 309 4.141274 TGTGAAACATTTGGAAGGAGAGGA 60.141 41.667 0.00 0.00 45.67 3.71
315 316 1.414158 TGGAAGGAGAGGAATAGGCG 58.586 55.000 0.00 0.00 0.00 5.52
323 324 4.134563 GGAGAGGAATAGGCGCATTTTTA 58.865 43.478 10.83 0.00 0.00 1.52
324 325 4.023963 GGAGAGGAATAGGCGCATTTTTAC 60.024 45.833 10.83 0.00 0.00 2.01
349 351 0.528466 ACCGCATGACGCACTATGAG 60.528 55.000 0.00 0.00 42.60 2.90
362 364 1.615883 ACTATGAGGTGGCGATGCTAG 59.384 52.381 0.00 0.00 0.00 3.42
419 423 1.613317 TAGTCGTGCCTCATGGTGGG 61.613 60.000 7.57 2.66 35.27 4.61
425 429 0.258484 TGCCTCATGGTGGGTATTGG 59.742 55.000 7.57 0.00 35.27 3.16
444 448 1.312815 GCTGAGCCTGTGTTTGTCTT 58.687 50.000 0.00 0.00 0.00 3.01
446 450 2.292267 CTGAGCCTGTGTTTGTCTTGT 58.708 47.619 0.00 0.00 0.00 3.16
465 470 1.286305 TTAGGGTTGGCCAGATCCCC 61.286 60.000 27.92 23.77 40.70 4.81
469 474 1.691219 GTTGGCCAGATCCCCTCAA 59.309 57.895 5.11 0.00 0.00 3.02
476 481 0.804989 CAGATCCCCTCAAAACGTGC 59.195 55.000 0.00 0.00 0.00 5.34
477 482 0.322546 AGATCCCCTCAAAACGTGCC 60.323 55.000 0.00 0.00 0.00 5.01
483 488 0.744281 CCTCAAAACGTGCCCAACTT 59.256 50.000 0.00 0.00 0.00 2.66
490 495 1.975660 ACGTGCCCAACTTTGTACAT 58.024 45.000 0.00 0.00 0.00 2.29
494 499 4.083003 ACGTGCCCAACTTTGTACATATTG 60.083 41.667 0.00 1.91 0.00 1.90
495 500 4.674101 CGTGCCCAACTTTGTACATATTGG 60.674 45.833 19.35 19.35 39.67 3.16
499 504 5.867174 GCCCAACTTTGTACATATTGGTTTC 59.133 40.000 22.25 12.79 38.53 2.78
534 543 1.897133 TGAAAATGCAATGCTCCTGCT 59.103 42.857 6.82 0.00 40.59 4.24
535 544 2.268298 GAAAATGCAATGCTCCTGCTG 58.732 47.619 6.82 0.00 40.59 4.41
543 552 2.125350 GCTCCTGCTGGTTCCTCG 60.125 66.667 9.73 0.00 36.03 4.63
544 553 2.581354 CTCCTGCTGGTTCCTCGG 59.419 66.667 9.73 0.00 34.23 4.63
550 559 0.183971 TGCTGGTTCCTCGGGAAAAA 59.816 50.000 6.91 0.00 43.86 1.94
551 560 1.203001 TGCTGGTTCCTCGGGAAAAAT 60.203 47.619 6.91 0.00 43.86 1.82
555 564 4.021807 GCTGGTTCCTCGGGAAAAATAAAA 60.022 41.667 6.91 0.00 43.86 1.52
556 565 5.510009 GCTGGTTCCTCGGGAAAAATAAAAA 60.510 40.000 6.91 0.00 43.86 1.94
609 618 8.276060 GTGAAACAAAACGCTTCAATGTATTA 57.724 30.769 0.00 0.00 31.66 0.98
648 657 9.569074 TTATTATAGGGGTATTTATCCTGCTGA 57.431 33.333 0.00 0.00 32.46 4.26
649 658 8.644432 ATTATAGGGGTATTTATCCTGCTGAT 57.356 34.615 0.00 0.00 37.49 2.90
650 659 6.977244 ATAGGGGTATTTATCCTGCTGATT 57.023 37.500 0.00 0.00 34.76 2.57
651 660 5.669798 AGGGGTATTTATCCTGCTGATTT 57.330 39.130 0.00 0.00 34.76 2.17
652 661 5.388654 AGGGGTATTTATCCTGCTGATTTG 58.611 41.667 0.00 0.00 34.76 2.32
653 662 5.134339 AGGGGTATTTATCCTGCTGATTTGA 59.866 40.000 0.00 0.00 34.76 2.69
654 663 6.012745 GGGGTATTTATCCTGCTGATTTGAT 58.987 40.000 0.00 0.00 34.76 2.57
655 664 6.151817 GGGGTATTTATCCTGCTGATTTGATC 59.848 42.308 0.00 0.00 34.76 2.92
656 665 6.716628 GGGTATTTATCCTGCTGATTTGATCA 59.283 38.462 0.00 0.00 37.76 2.92
657 666 7.231317 GGGTATTTATCCTGCTGATTTGATCAA 59.769 37.037 3.38 3.38 39.11 2.57
658 667 8.295288 GGTATTTATCCTGCTGATTTGATCAAG 58.705 37.037 8.41 0.00 39.11 3.02
659 668 9.060347 GTATTTATCCTGCTGATTTGATCAAGA 57.940 33.333 8.41 0.28 39.11 3.02
660 669 8.707796 ATTTATCCTGCTGATTTGATCAAGAT 57.292 30.769 8.41 7.84 39.11 2.40
661 670 9.803507 ATTTATCCTGCTGATTTGATCAAGATA 57.196 29.630 8.41 6.91 39.11 1.98
662 671 9.803507 TTTATCCTGCTGATTTGATCAAGATAT 57.196 29.630 8.41 0.00 39.11 1.63
663 672 7.925043 ATCCTGCTGATTTGATCAAGATATC 57.075 36.000 8.41 9.61 39.11 1.63
664 673 7.075851 TCCTGCTGATTTGATCAAGATATCT 57.924 36.000 16.01 0.00 39.11 1.98
665 674 6.935208 TCCTGCTGATTTGATCAAGATATCTG 59.065 38.462 16.01 15.87 39.11 2.90
666 675 6.935208 CCTGCTGATTTGATCAAGATATCTGA 59.065 38.462 20.82 6.66 39.11 3.27
667 676 7.118535 CCTGCTGATTTGATCAAGATATCTGAG 59.881 40.741 20.82 15.95 39.11 3.35
668 677 7.506971 TGCTGATTTGATCAAGATATCTGAGT 58.493 34.615 20.82 0.00 39.11 3.41
669 678 7.656542 TGCTGATTTGATCAAGATATCTGAGTC 59.343 37.037 20.82 5.40 39.11 3.36
670 679 7.656542 GCTGATTTGATCAAGATATCTGAGTCA 59.343 37.037 20.82 7.90 39.11 3.41
671 680 9.713713 CTGATTTGATCAAGATATCTGAGTCAT 57.286 33.333 16.01 1.31 39.11 3.06
677 686 9.895138 TGATCAAGATATCTGAGTCATTTTTCA 57.105 29.630 5.86 2.37 0.00 2.69
680 689 9.170734 TCAAGATATCTGAGTCATTTTTCAAGG 57.829 33.333 5.86 0.00 0.00 3.61
681 690 8.404000 CAAGATATCTGAGTCATTTTTCAAGGG 58.596 37.037 5.86 0.00 0.00 3.95
682 691 7.865820 AGATATCTGAGTCATTTTTCAAGGGA 58.134 34.615 3.89 0.00 0.00 4.20
683 692 8.331740 AGATATCTGAGTCATTTTTCAAGGGAA 58.668 33.333 3.89 0.00 0.00 3.97
684 693 8.884124 ATATCTGAGTCATTTTTCAAGGGAAA 57.116 30.769 0.00 0.00 41.13 3.13
697 706 7.754851 TTTCAAGGGAAAAGTTATGTACTCC 57.245 36.000 0.00 0.00 39.96 3.85
698 707 5.812286 TCAAGGGAAAAGTTATGTACTCCC 58.188 41.667 4.73 4.73 38.48 4.30
699 708 5.550403 TCAAGGGAAAAGTTATGTACTCCCT 59.450 40.000 8.84 8.84 46.11 4.20
700 709 5.695424 AGGGAAAAGTTATGTACTCCCTC 57.305 43.478 8.84 0.00 42.57 4.30
701 710 4.473922 AGGGAAAAGTTATGTACTCCCTCC 59.526 45.833 8.84 0.00 42.57 4.30
702 711 4.439968 GGAAAAGTTATGTACTCCCTCCG 58.560 47.826 0.00 0.00 35.54 4.63
703 712 4.081254 GGAAAAGTTATGTACTCCCTCCGT 60.081 45.833 0.00 0.00 35.54 4.69
704 713 5.485620 GAAAAGTTATGTACTCCCTCCGTT 58.514 41.667 0.00 0.00 35.54 4.44
705 714 4.732672 AAGTTATGTACTCCCTCCGTTC 57.267 45.455 0.00 0.00 35.54 3.95
706 715 3.978610 AGTTATGTACTCCCTCCGTTCT 58.021 45.455 0.00 0.00 28.23 3.01
707 716 5.121380 AGTTATGTACTCCCTCCGTTCTA 57.879 43.478 0.00 0.00 28.23 2.10
708 717 5.513233 AGTTATGTACTCCCTCCGTTCTAA 58.487 41.667 0.00 0.00 28.23 2.10
709 718 5.954150 AGTTATGTACTCCCTCCGTTCTAAA 59.046 40.000 0.00 0.00 28.23 1.85
710 719 6.438425 AGTTATGTACTCCCTCCGTTCTAAAA 59.562 38.462 0.00 0.00 28.23 1.52
711 720 5.952347 ATGTACTCCCTCCGTTCTAAAAT 57.048 39.130 0.00 0.00 0.00 1.82
712 721 8.416329 GTTATGTACTCCCTCCGTTCTAAAATA 58.584 37.037 0.00 0.00 0.00 1.40
713 722 6.461110 TGTACTCCCTCCGTTCTAAAATAG 57.539 41.667 0.00 0.00 0.00 1.73
714 723 6.189859 TGTACTCCCTCCGTTCTAAAATAGA 58.810 40.000 0.00 0.00 0.00 1.98
715 724 6.837568 TGTACTCCCTCCGTTCTAAAATAGAT 59.162 38.462 0.00 0.00 34.22 1.98
716 725 6.163135 ACTCCCTCCGTTCTAAAATAGATG 57.837 41.667 0.00 0.00 34.22 2.90
717 726 5.897824 ACTCCCTCCGTTCTAAAATAGATGA 59.102 40.000 0.00 0.00 34.22 2.92
718 727 6.158023 TCCCTCCGTTCTAAAATAGATGAC 57.842 41.667 0.00 0.00 34.22 3.06
719 728 5.897824 TCCCTCCGTTCTAAAATAGATGACT 59.102 40.000 0.00 0.00 34.22 3.41
720 729 6.040616 TCCCTCCGTTCTAAAATAGATGACTC 59.959 42.308 0.00 0.00 34.22 3.36
721 730 6.183360 CCCTCCGTTCTAAAATAGATGACTCA 60.183 42.308 0.00 0.00 34.22 3.41
722 731 7.265673 CCTCCGTTCTAAAATAGATGACTCAA 58.734 38.462 0.00 0.00 34.22 3.02
723 732 7.928706 CCTCCGTTCTAAAATAGATGACTCAAT 59.071 37.037 0.00 0.00 34.22 2.57
724 733 9.319143 CTCCGTTCTAAAATAGATGACTCAATT 57.681 33.333 0.00 0.00 34.22 2.32
725 734 9.667107 TCCGTTCTAAAATAGATGACTCAATTT 57.333 29.630 0.00 0.00 34.22 1.82
809 818 0.320374 CTGACCAACTTAGTCGGCCA 59.680 55.000 2.24 0.00 37.04 5.36
866 875 5.512404 CCCATATGGCTCTATAAAACGACCA 60.512 44.000 16.97 0.00 0.00 4.02
928 937 3.149981 AGAGACATCGATCGATAGCCAA 58.850 45.455 28.94 1.06 32.93 4.52
952 961 1.465794 AGCTCCTTCGTCTACTCCAC 58.534 55.000 0.00 0.00 0.00 4.02
958 967 2.288030 CCTTCGTCTACTCCACACGTTT 60.288 50.000 0.00 0.00 35.05 3.60
959 968 2.410785 TCGTCTACTCCACACGTTTG 57.589 50.000 0.00 0.00 35.05 2.93
968 977 1.697432 TCCACACGTTTGATTCCCTCT 59.303 47.619 2.58 0.00 0.00 3.69
971 980 3.403038 CACACGTTTGATTCCCTCTCTT 58.597 45.455 0.00 0.00 0.00 2.85
1007 1016 0.321564 TTCACTTCGACCATGGCCTG 60.322 55.000 13.04 1.30 0.00 4.85
1008 1017 2.045926 ACTTCGACCATGGCCTGC 60.046 61.111 13.04 0.00 0.00 4.85
1009 1018 3.197790 CTTCGACCATGGCCTGCG 61.198 66.667 13.04 11.01 0.00 5.18
1041 1050 2.671177 CGCGCTCCTTGTTGTCCTG 61.671 63.158 5.56 0.00 0.00 3.86
1044 1053 1.456287 GCTCCTTGTTGTCCTGGGT 59.544 57.895 0.00 0.00 0.00 4.51
1183 1192 1.884579 GTGAGTCCGGTCTCAACACTA 59.115 52.381 29.11 6.53 44.48 2.74
1187 1196 3.080319 AGTCCGGTCTCAACACTACTAC 58.920 50.000 0.00 0.00 0.00 2.73
1189 1199 3.505293 GTCCGGTCTCAACACTACTACTT 59.495 47.826 0.00 0.00 0.00 2.24
1190 1200 3.755378 TCCGGTCTCAACACTACTACTTC 59.245 47.826 0.00 0.00 0.00 3.01
1195 1205 4.910456 GTCTCAACACTACTACTTCACACG 59.090 45.833 0.00 0.00 0.00 4.49
1196 1206 4.023450 TCTCAACACTACTACTTCACACGG 60.023 45.833 0.00 0.00 0.00 4.94
1198 1208 4.098349 TCAACACTACTACTTCACACGGTT 59.902 41.667 0.00 0.00 0.00 4.44
1204 1214 7.170320 ACACTACTACTTCACACGGTTATTTTG 59.830 37.037 0.00 0.00 0.00 2.44
1209 1219 3.840890 TCACACGGTTATTTTGGATGC 57.159 42.857 0.00 0.00 0.00 3.91
1214 1224 5.123186 CACACGGTTATTTTGGATGCTAGAA 59.877 40.000 0.00 0.00 0.00 2.10
1217 1227 5.708230 ACGGTTATTTTGGATGCTAGAACAA 59.292 36.000 0.00 0.00 0.00 2.83
1220 1230 7.029563 GGTTATTTTGGATGCTAGAACAACTG 58.970 38.462 0.00 0.00 0.00 3.16
1222 1232 3.788227 TTGGATGCTAGAACAACTGGT 57.212 42.857 0.00 0.00 0.00 4.00
1223 1233 3.057969 TGGATGCTAGAACAACTGGTG 57.942 47.619 0.00 0.00 0.00 4.17
1224 1234 2.371841 TGGATGCTAGAACAACTGGTGT 59.628 45.455 0.00 0.00 44.64 4.16
1262 1272 4.579127 AACTGGTGTTGGTCAGCC 57.421 55.556 0.00 0.00 43.10 4.85
1263 1273 1.612513 AACTGGTGTTGGTCAGCCA 59.387 52.632 0.00 0.00 43.10 4.75
1264 1274 0.751643 AACTGGTGTTGGTCAGCCAC 60.752 55.000 0.00 0.00 46.01 5.01
1265 1275 1.149174 CTGGTGTTGGTCAGCCACT 59.851 57.895 0.00 0.00 46.01 4.00
1266 1276 0.396435 CTGGTGTTGGTCAGCCACTA 59.604 55.000 0.00 0.00 46.01 2.74
1267 1277 0.840617 TGGTGTTGGTCAGCCACTAA 59.159 50.000 0.00 0.00 46.01 2.24
1268 1278 1.213182 TGGTGTTGGTCAGCCACTAAA 59.787 47.619 0.00 0.00 46.01 1.85
1269 1279 2.303175 GGTGTTGGTCAGCCACTAAAA 58.697 47.619 0.00 0.00 46.01 1.52
1270 1280 2.034179 GGTGTTGGTCAGCCACTAAAAC 59.966 50.000 0.00 0.00 46.01 2.43
1271 1281 2.034179 GTGTTGGTCAGCCACTAAAACC 59.966 50.000 0.00 0.00 46.01 3.27
1272 1282 2.092103 TGTTGGTCAGCCACTAAAACCT 60.092 45.455 0.00 0.00 46.01 3.50
1273 1283 3.136809 TGTTGGTCAGCCACTAAAACCTA 59.863 43.478 0.00 0.00 46.01 3.08
1274 1284 4.139038 GTTGGTCAGCCACTAAAACCTAA 58.861 43.478 0.00 0.00 46.01 2.69
1275 1285 4.650972 TGGTCAGCCACTAAAACCTAAT 57.349 40.909 0.00 0.00 40.46 1.73
1294 1304 3.593442 ATTGGACCCTCAGTTTGTTCA 57.407 42.857 0.00 0.00 0.00 3.18
1295 1305 2.341846 TGGACCCTCAGTTTGTTCAC 57.658 50.000 0.00 0.00 0.00 3.18
1296 1306 1.843851 TGGACCCTCAGTTTGTTCACT 59.156 47.619 0.00 0.00 0.00 3.41
1297 1307 2.222027 GGACCCTCAGTTTGTTCACTG 58.778 52.381 0.00 0.00 44.96 3.66
1298 1308 2.222027 GACCCTCAGTTTGTTCACTGG 58.778 52.381 1.14 0.00 43.92 4.00
1299 1309 1.843851 ACCCTCAGTTTGTTCACTGGA 59.156 47.619 1.14 0.00 43.92 3.86
1300 1310 2.443255 ACCCTCAGTTTGTTCACTGGAT 59.557 45.455 1.14 0.00 43.92 3.41
1301 1311 3.117512 ACCCTCAGTTTGTTCACTGGATT 60.118 43.478 1.14 0.00 43.92 3.01
1302 1312 4.104102 ACCCTCAGTTTGTTCACTGGATTA 59.896 41.667 1.14 0.00 43.92 1.75
1303 1313 4.697352 CCCTCAGTTTGTTCACTGGATTAG 59.303 45.833 1.14 0.00 43.92 1.73
1304 1314 4.154918 CCTCAGTTTGTTCACTGGATTAGC 59.845 45.833 1.14 0.00 43.92 3.09
1305 1315 4.713553 TCAGTTTGTTCACTGGATTAGCA 58.286 39.130 1.14 0.00 43.92 3.49
1306 1316 5.316167 TCAGTTTGTTCACTGGATTAGCAT 58.684 37.500 1.14 0.00 43.92 3.79
1307 1317 5.181811 TCAGTTTGTTCACTGGATTAGCATG 59.818 40.000 1.14 0.00 43.92 4.06
1308 1318 4.082571 AGTTTGTTCACTGGATTAGCATGC 60.083 41.667 10.51 10.51 0.00 4.06
1309 1319 3.070476 TGTTCACTGGATTAGCATGCA 57.930 42.857 21.98 0.00 0.00 3.96
1310 1320 2.749076 TGTTCACTGGATTAGCATGCAC 59.251 45.455 21.98 7.99 0.00 4.57
1311 1321 2.749076 GTTCACTGGATTAGCATGCACA 59.251 45.455 21.98 5.79 0.00 4.57
1312 1322 3.286329 TCACTGGATTAGCATGCACAT 57.714 42.857 21.98 11.08 0.00 3.21
1313 1323 2.946990 TCACTGGATTAGCATGCACATG 59.053 45.455 21.98 6.25 41.60 3.21
1314 1324 2.946990 CACTGGATTAGCATGCACATGA 59.053 45.455 21.98 0.00 41.20 3.07
1315 1325 2.947652 ACTGGATTAGCATGCACATGAC 59.052 45.455 21.98 5.92 41.20 3.06
1316 1326 2.292569 CTGGATTAGCATGCACATGACC 59.707 50.000 21.98 14.82 41.20 4.02
1317 1327 2.092267 TGGATTAGCATGCACATGACCT 60.092 45.455 21.98 5.54 41.20 3.85
1318 1328 2.954318 GGATTAGCATGCACATGACCTT 59.046 45.455 21.98 0.00 41.20 3.50
1319 1329 4.136796 GGATTAGCATGCACATGACCTTA 58.863 43.478 21.98 0.00 41.20 2.69
1320 1330 4.580167 GGATTAGCATGCACATGACCTTAA 59.420 41.667 21.98 6.59 41.20 1.85
1321 1331 5.242393 GGATTAGCATGCACATGACCTTAAT 59.758 40.000 21.98 11.26 41.20 1.40
1322 1332 6.239120 GGATTAGCATGCACATGACCTTAATT 60.239 38.462 21.98 0.00 41.20 1.40
1323 1333 7.040478 GGATTAGCATGCACATGACCTTAATTA 60.040 37.037 21.98 0.00 41.20 1.40
1324 1334 7.822161 TTAGCATGCACATGACCTTAATTAT 57.178 32.000 21.98 0.00 41.20 1.28
1325 1335 6.080648 AGCATGCACATGACCTTAATTATG 57.919 37.500 21.98 0.00 41.20 1.90
1326 1336 5.595542 AGCATGCACATGACCTTAATTATGT 59.404 36.000 21.98 0.00 41.20 2.29
1327 1337 6.097270 AGCATGCACATGACCTTAATTATGTT 59.903 34.615 21.98 0.00 41.20 2.71
1328 1338 6.757947 GCATGCACATGACCTTAATTATGTTT 59.242 34.615 14.21 0.00 41.20 2.83
1329 1339 7.278424 GCATGCACATGACCTTAATTATGTTTT 59.722 33.333 14.21 0.00 41.20 2.43
1330 1340 9.153721 CATGCACATGACCTTAATTATGTTTTT 57.846 29.630 4.57 0.00 41.20 1.94
1396 1406 8.922058 TTTTAGCTAGGAGTACGTTTATTCTG 57.078 34.615 0.00 0.00 0.00 3.02
1397 1407 4.934515 AGCTAGGAGTACGTTTATTCTGC 58.065 43.478 0.00 0.00 0.00 4.26
1398 1408 4.645588 AGCTAGGAGTACGTTTATTCTGCT 59.354 41.667 0.00 0.00 33.55 4.24
1399 1409 4.977347 GCTAGGAGTACGTTTATTCTGCTC 59.023 45.833 0.00 0.00 31.62 4.26
1400 1410 5.221087 GCTAGGAGTACGTTTATTCTGCTCT 60.221 44.000 0.00 0.00 31.62 4.09
1401 1411 5.662674 AGGAGTACGTTTATTCTGCTCTT 57.337 39.130 0.00 0.00 0.00 2.85
1402 1412 5.411781 AGGAGTACGTTTATTCTGCTCTTG 58.588 41.667 0.00 0.00 0.00 3.02
1403 1413 4.033014 GGAGTACGTTTATTCTGCTCTTGC 59.967 45.833 0.00 0.00 40.20 4.01
1405 1415 3.813529 ACGTTTATTCTGCTCTTGCAC 57.186 42.857 0.00 0.00 45.31 4.57
1406 1416 3.138304 ACGTTTATTCTGCTCTTGCACA 58.862 40.909 0.00 0.00 45.31 4.57
1407 1417 3.058914 ACGTTTATTCTGCTCTTGCACAC 60.059 43.478 0.00 0.00 45.31 3.82
1408 1418 3.058983 CGTTTATTCTGCTCTTGCACACA 60.059 43.478 0.00 0.00 45.31 3.72
1409 1419 4.554526 CGTTTATTCTGCTCTTGCACACAA 60.555 41.667 0.00 0.00 45.31 3.33
1410 1420 5.280945 GTTTATTCTGCTCTTGCACACAAA 58.719 37.500 0.00 0.00 45.31 2.83
1411 1421 5.512753 TTATTCTGCTCTTGCACACAAAA 57.487 34.783 0.00 0.00 45.31 2.44
1412 1422 3.865011 TTCTGCTCTTGCACACAAAAA 57.135 38.095 0.00 0.00 45.31 1.94
1438 1448 9.461312 AAAACTATATTGCACAAGTCCTAATCA 57.539 29.630 0.00 0.00 0.00 2.57
1439 1449 9.632638 AAACTATATTGCACAAGTCCTAATCAT 57.367 29.630 0.00 0.00 0.00 2.45
1441 1451 9.712305 ACTATATTGCACAAGTCCTAATCATAC 57.288 33.333 0.00 0.00 0.00 2.39
1442 1452 9.710900 CTATATTGCACAAGTCCTAATCATACA 57.289 33.333 0.00 0.00 0.00 2.29
1443 1453 8.978874 ATATTGCACAAGTCCTAATCATACAA 57.021 30.769 0.00 0.00 0.00 2.41
1444 1454 6.494893 TTGCACAAGTCCTAATCATACAAC 57.505 37.500 0.00 0.00 0.00 3.32
1445 1455 5.804639 TGCACAAGTCCTAATCATACAACT 58.195 37.500 0.00 0.00 0.00 3.16
1446 1456 5.874810 TGCACAAGTCCTAATCATACAACTC 59.125 40.000 0.00 0.00 0.00 3.01
1447 1457 6.109359 GCACAAGTCCTAATCATACAACTCT 58.891 40.000 0.00 0.00 0.00 3.24
1448 1458 6.595716 GCACAAGTCCTAATCATACAACTCTT 59.404 38.462 0.00 0.00 0.00 2.85
1449 1459 7.413438 GCACAAGTCCTAATCATACAACTCTTG 60.413 40.741 0.00 0.00 35.96 3.02
1451 1461 8.157476 ACAAGTCCTAATCATACAACTCTTGTT 58.843 33.333 0.00 0.00 42.22 2.83
1452 1462 8.660373 CAAGTCCTAATCATACAACTCTTGTTC 58.340 37.037 0.00 0.00 42.22 3.18
1453 1463 7.331791 AGTCCTAATCATACAACTCTTGTTCC 58.668 38.462 0.00 0.00 42.22 3.62
1454 1464 7.038302 AGTCCTAATCATACAACTCTTGTTCCA 60.038 37.037 0.00 0.00 42.22 3.53
1455 1465 7.606456 GTCCTAATCATACAACTCTTGTTCCAA 59.394 37.037 0.00 0.00 42.22 3.53
1456 1466 8.160765 TCCTAATCATACAACTCTTGTTCCAAA 58.839 33.333 0.00 0.00 42.22 3.28
1457 1467 8.792633 CCTAATCATACAACTCTTGTTCCAAAA 58.207 33.333 0.00 0.00 42.22 2.44
1458 1468 9.612620 CTAATCATACAACTCTTGTTCCAAAAC 57.387 33.333 0.00 0.00 42.22 2.43
1459 1469 7.581213 ATCATACAACTCTTGTTCCAAAACA 57.419 32.000 0.00 0.00 42.22 2.83
1460 1470 7.581213 TCATACAACTCTTGTTCCAAAACAT 57.419 32.000 0.00 0.00 44.59 2.71
1461 1471 8.006298 TCATACAACTCTTGTTCCAAAACATT 57.994 30.769 0.00 0.00 44.59 2.71
1462 1472 8.134895 TCATACAACTCTTGTTCCAAAACATTC 58.865 33.333 0.00 0.00 44.59 2.67
1463 1473 6.530019 ACAACTCTTGTTCCAAAACATTCT 57.470 33.333 0.00 0.00 44.59 2.40
1464 1474 6.935167 ACAACTCTTGTTCCAAAACATTCTT 58.065 32.000 0.00 0.00 44.59 2.52
1465 1475 7.386059 ACAACTCTTGTTCCAAAACATTCTTT 58.614 30.769 0.00 0.00 44.59 2.52
1466 1476 7.877612 ACAACTCTTGTTCCAAAACATTCTTTT 59.122 29.630 0.00 0.00 44.59 2.27
1467 1477 8.720562 CAACTCTTGTTCCAAAACATTCTTTTT 58.279 29.630 0.00 0.00 44.59 1.94
1468 1478 8.255394 ACTCTTGTTCCAAAACATTCTTTTTG 57.745 30.769 2.04 2.04 44.59 2.44
1481 1491 9.883142 AAACATTCTTTTTGGAATTGTTAGTGA 57.117 25.926 0.00 0.00 34.15 3.41
1482 1492 8.871686 ACATTCTTTTTGGAATTGTTAGTGAC 57.128 30.769 0.00 0.00 34.15 3.67
1483 1493 8.474025 ACATTCTTTTTGGAATTGTTAGTGACA 58.526 29.630 0.00 0.00 34.15 3.58
1514 1524 9.965902 ATTTCTGTTCTATGAACTAGAAATGGT 57.034 29.630 26.46 16.50 45.72 3.55
1517 1527 9.871238 TCTGTTCTATGAACTAGAAATGGTAAC 57.129 33.333 11.06 0.00 45.72 2.50
1518 1528 9.653287 CTGTTCTATGAACTAGAAATGGTAACA 57.347 33.333 11.06 0.00 45.72 2.41
1522 1532 9.431887 TCTATGAACTAGAAATGGTAACAACAC 57.568 33.333 0.00 0.00 41.43 3.32
1750 1760 1.737735 CATGAAGCTCGCCGTCACA 60.738 57.895 0.00 0.00 34.78 3.58
1880 1902 3.452786 TCCTCCTCAAGCTCGCCG 61.453 66.667 0.00 0.00 0.00 6.46
1920 1942 2.961522 TCGATGTTGGAAAGTTTCGC 57.038 45.000 9.46 3.72 0.00 4.70
1929 1951 1.463528 GGAAAGTTTCGCCGATCGTTG 60.464 52.381 15.09 5.91 39.67 4.10
1968 1995 1.444895 ACGCGCTAGTTTGTACCGG 60.445 57.895 5.73 0.00 0.00 5.28
1981 2008 2.288025 TACCGGAGAGTGGTTGCCC 61.288 63.158 9.46 0.00 40.96 5.36
2020 2047 6.315144 TGATATGATTGGTTGGTTTCGTAGTG 59.685 38.462 0.00 0.00 0.00 2.74
2024 2051 3.834489 TGGTTGGTTTCGTAGTGGTTA 57.166 42.857 0.00 0.00 0.00 2.85
2054 2081 8.363390 TGAGTGACTTGTATGGATCATTATCTC 58.637 37.037 0.00 0.00 32.29 2.75
2065 2092 6.226052 TGGATCATTATCTCCGATGTTTCTG 58.774 40.000 0.00 0.00 34.05 3.02
2073 2114 8.693120 TTATCTCCGATGTTTCTGTCTAGTAT 57.307 34.615 0.00 0.00 0.00 2.12
2074 2115 9.788889 TTATCTCCGATGTTTCTGTCTAGTATA 57.211 33.333 0.00 0.00 0.00 1.47
2076 2117 8.155821 TCTCCGATGTTTCTGTCTAGTATAAG 57.844 38.462 0.00 0.00 0.00 1.73
2079 2120 9.399797 TCCGATGTTTCTGTCTAGTATAAGTAA 57.600 33.333 0.00 0.00 0.00 2.24
2135 2176 4.828939 AGTTTGGATTCTGTCAATGCTGAA 59.171 37.500 0.00 0.00 31.88 3.02
2136 2177 5.479375 AGTTTGGATTCTGTCAATGCTGAAT 59.521 36.000 8.56 8.56 38.92 2.57
2200 2242 6.072119 TTTTTCCGAAAAAGAGGATAAGCCTC 60.072 38.462 13.84 4.16 44.75 4.70
2219 2266 0.788995 CGCCTCTGCATCGAATGATC 59.211 55.000 0.00 0.00 37.32 2.92
2223 2270 1.791204 CTCTGCATCGAATGATCCACG 59.209 52.381 0.00 0.00 30.49 4.94
2224 2271 1.408702 TCTGCATCGAATGATCCACGA 59.591 47.619 8.05 8.05 40.18 4.35
2228 2275 2.609459 GCATCGAATGATCCACGAAACT 59.391 45.455 9.30 0.00 39.38 2.66
2267 2314 3.810310 AAAATCCAACAGCCGAACAAA 57.190 38.095 0.00 0.00 0.00 2.83
2268 2315 4.335400 AAAATCCAACAGCCGAACAAAT 57.665 36.364 0.00 0.00 0.00 2.32
2269 2316 4.335400 AAATCCAACAGCCGAACAAATT 57.665 36.364 0.00 0.00 0.00 1.82
2270 2317 3.575965 ATCCAACAGCCGAACAAATTC 57.424 42.857 0.00 0.00 0.00 2.17
2271 2318 2.302260 TCCAACAGCCGAACAAATTCA 58.698 42.857 0.00 0.00 34.14 2.57
2272 2319 2.690497 TCCAACAGCCGAACAAATTCAA 59.310 40.909 0.00 0.00 34.14 2.69
2273 2320 2.794350 CCAACAGCCGAACAAATTCAAC 59.206 45.455 0.00 0.00 34.14 3.18
2274 2321 2.793278 ACAGCCGAACAAATTCAACC 57.207 45.000 0.00 0.00 34.14 3.77
2275 2322 2.028130 ACAGCCGAACAAATTCAACCA 58.972 42.857 0.00 0.00 34.14 3.67
2276 2323 2.034558 ACAGCCGAACAAATTCAACCAG 59.965 45.455 0.00 0.00 34.14 4.00
2277 2324 2.293122 CAGCCGAACAAATTCAACCAGA 59.707 45.455 0.00 0.00 34.14 3.86
2278 2325 2.955660 AGCCGAACAAATTCAACCAGAA 59.044 40.909 0.00 0.00 41.28 3.02
2279 2326 3.383185 AGCCGAACAAATTCAACCAGAAA 59.617 39.130 0.00 0.00 40.22 2.52
2280 2327 4.116238 GCCGAACAAATTCAACCAGAAAA 58.884 39.130 0.00 0.00 40.22 2.29
2281 2328 4.568760 GCCGAACAAATTCAACCAGAAAAA 59.431 37.500 0.00 0.00 40.22 1.94
2282 2329 5.276820 GCCGAACAAATTCAACCAGAAAAAG 60.277 40.000 0.00 0.00 40.22 2.27
2283 2330 6.039616 CCGAACAAATTCAACCAGAAAAAGA 58.960 36.000 0.00 0.00 40.22 2.52
2284 2331 6.533367 CCGAACAAATTCAACCAGAAAAAGAA 59.467 34.615 0.00 0.00 40.22 2.52
2285 2332 7.064016 CCGAACAAATTCAACCAGAAAAAGAAA 59.936 33.333 0.00 0.00 40.22 2.52
2286 2333 8.439286 CGAACAAATTCAACCAGAAAAAGAAAA 58.561 29.630 0.00 0.00 40.22 2.29
2292 2339 9.546428 AATTCAACCAGAAAAAGAAAATACCTG 57.454 29.630 0.00 0.00 40.22 4.00
2293 2340 7.889873 TCAACCAGAAAAAGAAAATACCTGA 57.110 32.000 0.00 0.00 0.00 3.86
2294 2341 7.940850 TCAACCAGAAAAAGAAAATACCTGAG 58.059 34.615 0.00 0.00 0.00 3.35
2295 2342 7.777910 TCAACCAGAAAAAGAAAATACCTGAGA 59.222 33.333 0.00 0.00 0.00 3.27
2296 2343 7.511959 ACCAGAAAAAGAAAATACCTGAGAC 57.488 36.000 0.00 0.00 0.00 3.36
2297 2344 6.490381 ACCAGAAAAAGAAAATACCTGAGACC 59.510 38.462 0.00 0.00 0.00 3.85
2298 2345 6.490040 CCAGAAAAAGAAAATACCTGAGACCA 59.510 38.462 0.00 0.00 0.00 4.02
2299 2346 7.363431 CAGAAAAAGAAAATACCTGAGACCAC 58.637 38.462 0.00 0.00 0.00 4.16
2300 2347 5.941948 AAAAGAAAATACCTGAGACCACG 57.058 39.130 0.00 0.00 0.00 4.94
2301 2348 4.618920 AAGAAAATACCTGAGACCACGT 57.381 40.909 0.00 0.00 0.00 4.49
2302 2349 3.926616 AGAAAATACCTGAGACCACGTG 58.073 45.455 9.08 9.08 0.00 4.49
2303 2350 2.094762 AAATACCTGAGACCACGTGC 57.905 50.000 10.91 0.00 0.00 5.34
2304 2351 0.249398 AATACCTGAGACCACGTGCC 59.751 55.000 10.91 3.88 0.00 5.01
2337 2384 4.415596 AGCTCCACCAATTAACCATTGAA 58.584 39.130 0.00 0.00 44.78 2.69
2340 2387 5.083533 TCCACCAATTAACCATTGAATGC 57.916 39.130 0.00 0.00 44.78 3.56
2342 2389 4.630940 CCACCAATTAACCATTGAATGCAC 59.369 41.667 0.00 0.00 44.78 4.57
2343 2390 4.630940 CACCAATTAACCATTGAATGCACC 59.369 41.667 0.00 0.00 44.78 5.01
2344 2391 4.531732 ACCAATTAACCATTGAATGCACCT 59.468 37.500 0.00 0.00 44.78 4.00
2345 2392 4.871557 CCAATTAACCATTGAATGCACCTG 59.128 41.667 0.00 0.00 44.78 4.00
2346 2393 3.591196 TTAACCATTGAATGCACCTGC 57.409 42.857 0.00 0.00 42.50 4.85
2384 2431 6.040842 ACCATTGAGTGAAAAATACACAGCTT 59.959 34.615 0.00 0.00 40.25 3.74
2385 2515 6.925165 CCATTGAGTGAAAAATACACAGCTTT 59.075 34.615 0.00 0.00 40.25 3.51
2442 2572 3.999229 GTCAATGATGACGAGTCCAAC 57.001 47.619 0.34 0.00 45.94 3.77
2448 2578 3.361786 TGATGACGAGTCCAACCATAGA 58.638 45.455 0.34 0.00 0.00 1.98
2451 2581 3.361786 TGACGAGTCCAACCATAGATCA 58.638 45.455 0.00 0.00 0.00 2.92
2458 2588 4.163078 AGTCCAACCATAGATCAGTCTTGG 59.837 45.833 0.00 0.00 38.01 3.61
2464 2594 6.332976 ACCATAGATCAGTCTTGGGATTTT 57.667 37.500 0.00 0.00 37.15 1.82
2465 2595 6.360618 ACCATAGATCAGTCTTGGGATTTTC 58.639 40.000 0.00 0.00 37.15 2.29
2467 2597 6.261826 CCATAGATCAGTCTTGGGATTTTCAC 59.738 42.308 0.00 0.00 35.87 3.18
2499 2630 1.804748 GTTTCGATCCACCACCTTCAC 59.195 52.381 0.00 0.00 0.00 3.18
2503 2634 1.544537 CGATCCACCACCTTCACCAAA 60.545 52.381 0.00 0.00 0.00 3.28
2509 2640 0.944386 CCACCTTCACCAAAGACACG 59.056 55.000 0.00 0.00 37.12 4.49
2515 2649 1.440850 CACCAAAGACACGCATGCG 60.441 57.895 36.79 36.79 46.03 4.73
2516 2650 2.502510 CCAAAGACACGCATGCGC 60.503 61.111 38.15 22.85 44.19 6.09
2530 2664 2.956964 GCGCGCTTCGACATAGCT 60.957 61.111 26.67 0.00 41.67 3.32
2536 2670 1.789464 CGCTTCGACATAGCTTGATCC 59.211 52.381 6.07 0.00 36.49 3.36
2537 2671 1.789464 GCTTCGACATAGCTTGATCCG 59.211 52.381 0.00 0.00 35.74 4.18
2542 2676 3.189495 TCGACATAGCTTGATCCGAGATC 59.811 47.826 0.00 6.87 0.00 2.75
2543 2677 3.671971 CGACATAGCTTGATCCGAGATCC 60.672 52.174 0.00 0.00 0.00 3.36
2549 2683 2.419297 GCTTGATCCGAGATCCTGTGTT 60.419 50.000 10.25 0.00 0.00 3.32
2551 2685 3.526931 TGATCCGAGATCCTGTGTTTC 57.473 47.619 10.25 0.00 0.00 2.78
2552 2686 3.099905 TGATCCGAGATCCTGTGTTTCT 58.900 45.455 10.25 0.00 0.00 2.52
2556 2690 3.315470 TCCGAGATCCTGTGTTTCTATCG 59.685 47.826 0.00 0.00 0.00 2.92
2571 2705 3.186909 TCTATCGGATTGTGCAAACTCG 58.813 45.455 0.00 0.00 0.00 4.18
2581 2715 0.934496 TGCAAACTCGTCGTTGAAGG 59.066 50.000 0.00 0.00 35.61 3.46
2584 2718 1.828331 AAACTCGTCGTTGAAGGCGC 61.828 55.000 0.00 0.00 35.61 6.53
2585 2719 2.430921 CTCGTCGTTGAAGGCGCT 60.431 61.111 7.64 0.00 0.00 5.92
2592 2726 0.669318 CGTTGAAGGCGCTTCTACCA 60.669 55.000 19.55 6.60 40.93 3.25
2598 2732 1.418334 AGGCGCTTCTACCATCATCT 58.582 50.000 7.64 0.00 0.00 2.90
2617 2755 1.226323 CTTGACTACCGACGCCTCG 60.226 63.158 0.00 0.00 39.83 4.63
2630 2768 0.654160 CGCCTCGTCTATACACACGA 59.346 55.000 0.00 0.00 42.61 4.35
2640 2778 5.108854 CGTCTATACACACGAACGCTTATTC 60.109 44.000 0.00 0.00 38.32 1.75
2665 2803 3.360867 TGAGCACCTTCAAAAGACCAAA 58.639 40.909 0.00 0.00 0.00 3.28
2677 2815 8.582433 TTCAAAAGACCAAACCGATTAATTTC 57.418 30.769 0.00 0.00 0.00 2.17
2682 2821 9.554395 AAAGACCAAACCGATTAATTTCAAAAT 57.446 25.926 0.00 0.00 0.00 1.82
2699 2838 6.403866 TCAAAATAACACTCATGCCAAGTT 57.596 33.333 0.00 0.00 0.00 2.66
2702 2841 8.081633 TCAAAATAACACTCATGCCAAGTTTAG 58.918 33.333 0.00 0.00 0.00 1.85
2730 2869 8.109634 ACTTAAACCCATGTGAGTTGATTCTAT 58.890 33.333 0.00 0.00 0.00 1.98
2740 2879 8.853077 TGTGAGTTGATTCTATCACAAGAAAT 57.147 30.769 13.26 0.00 46.57 2.17
2741 2880 9.942850 TGTGAGTTGATTCTATCACAAGAAATA 57.057 29.630 13.26 0.00 46.57 1.40
2814 2953 9.877222 TCTTATTATACCTAGTTCTGGTCATGA 57.123 33.333 0.00 0.00 38.88 3.07
2816 2955 9.877222 TTATTATACCTAGTTCTGGTCATGAGA 57.123 33.333 0.00 0.00 38.88 3.27
2823 2962 4.352009 AGTTCTGGTCATGAGAGTGAGAT 58.648 43.478 0.00 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.554723 GCCACAAATAGCCAACATATCGAC 60.555 45.833 0.00 0.00 0.00 4.20
22 23 3.563808 GCCACAAATAGCCAACATATCGA 59.436 43.478 0.00 0.00 0.00 3.59
32 33 1.682005 TGGCCAGCCACAAATAGCC 60.682 57.895 7.43 0.00 41.89 3.93
58 59 1.471684 GGAGACAAAGCTGGCATCTTG 59.528 52.381 4.08 3.33 30.13 3.02
59 60 1.074405 TGGAGACAAAGCTGGCATCTT 59.926 47.619 0.00 0.00 37.44 2.40
68 69 0.250901 TTGGAGCCTGGAGACAAAGC 60.251 55.000 0.00 0.00 42.06 3.51
90 91 3.680156 TTGCAAAGATGGGTCGCC 58.320 55.556 0.00 0.00 0.00 5.54
109 110 1.092345 GCGACTGAGAAGGGGCAATC 61.092 60.000 0.00 0.00 0.00 2.67
114 115 2.125350 GCAGCGACTGAGAAGGGG 60.125 66.667 10.46 0.00 32.44 4.79
128 129 1.278985 TGGACACATGGTTCTAGGCAG 59.721 52.381 0.00 0.00 0.00 4.85
131 132 1.909302 AGGTGGACACATGGTTCTAGG 59.091 52.381 4.69 0.00 0.00 3.02
152 153 2.100916 ACTAGCAAGTCGTTGTGTGTCT 59.899 45.455 0.00 0.00 35.92 3.41
154 155 2.470821 GACTAGCAAGTCGTTGTGTGT 58.529 47.619 0.00 0.00 42.66 3.72
196 197 2.486191 CCCATCAGCAGGAGACATTACC 60.486 54.545 0.00 0.00 0.00 2.85
197 198 2.435805 TCCCATCAGCAGGAGACATTAC 59.564 50.000 0.00 0.00 0.00 1.89
210 211 2.141517 GCGATCAACTCATCCCATCAG 58.858 52.381 0.00 0.00 0.00 2.90
211 212 1.485895 TGCGATCAACTCATCCCATCA 59.514 47.619 0.00 0.00 0.00 3.07
212 213 2.245159 TGCGATCAACTCATCCCATC 57.755 50.000 0.00 0.00 0.00 3.51
213 214 2.715749 TTGCGATCAACTCATCCCAT 57.284 45.000 0.00 0.00 0.00 4.00
229 230 1.211190 CTGCTTCGCCTCCTTTTGC 59.789 57.895 0.00 0.00 0.00 3.68
233 234 4.416738 GCCCTGCTTCGCCTCCTT 62.417 66.667 0.00 0.00 0.00 3.36
255 256 0.249120 CAACCCACCTCTATGACGCA 59.751 55.000 0.00 0.00 0.00 5.24
258 259 6.071278 GGTATAGATCAACCCACCTCTATGAC 60.071 46.154 0.00 0.00 33.93 3.06
262 263 5.681494 AGGTATAGATCAACCCACCTCTA 57.319 43.478 7.96 0.00 36.34 2.43
264 265 4.409247 ACAAGGTATAGATCAACCCACCTC 59.591 45.833 7.96 0.00 35.36 3.85
265 266 4.164221 CACAAGGTATAGATCAACCCACCT 59.836 45.833 7.96 4.10 38.01 4.00
272 273 8.739039 CCAAATGTTTCACAAGGTATAGATCAA 58.261 33.333 0.00 0.00 0.00 2.57
281 282 4.285863 TCCTTCCAAATGTTTCACAAGGT 58.714 39.130 0.00 0.00 0.00 3.50
283 284 5.278660 CCTCTCCTTCCAAATGTTTCACAAG 60.279 44.000 0.00 0.00 0.00 3.16
289 290 6.190587 CCTATTCCTCTCCTTCCAAATGTTT 58.809 40.000 0.00 0.00 0.00 2.83
291 292 4.385754 GCCTATTCCTCTCCTTCCAAATGT 60.386 45.833 0.00 0.00 0.00 2.71
292 293 4.140536 GCCTATTCCTCTCCTTCCAAATG 58.859 47.826 0.00 0.00 0.00 2.32
293 294 3.181450 CGCCTATTCCTCTCCTTCCAAAT 60.181 47.826 0.00 0.00 0.00 2.32
296 297 1.414158 CGCCTATTCCTCTCCTTCCA 58.586 55.000 0.00 0.00 0.00 3.53
297 298 0.034198 GCGCCTATTCCTCTCCTTCC 59.966 60.000 0.00 0.00 0.00 3.46
298 299 0.753262 TGCGCCTATTCCTCTCCTTC 59.247 55.000 4.18 0.00 0.00 3.46
299 300 1.428869 ATGCGCCTATTCCTCTCCTT 58.571 50.000 4.18 0.00 0.00 3.36
300 301 1.428869 AATGCGCCTATTCCTCTCCT 58.571 50.000 4.18 0.00 0.00 3.69
301 302 2.262423 AAATGCGCCTATTCCTCTCC 57.738 50.000 4.18 0.00 0.00 3.71
302 303 4.318831 CGTAAAAATGCGCCTATTCCTCTC 60.319 45.833 4.18 0.00 0.00 3.20
303 304 3.560068 CGTAAAAATGCGCCTATTCCTCT 59.440 43.478 4.18 0.00 0.00 3.69
305 306 2.616842 CCGTAAAAATGCGCCTATTCCT 59.383 45.455 4.18 0.00 0.00 3.36
306 307 2.287368 CCCGTAAAAATGCGCCTATTCC 60.287 50.000 4.18 0.00 0.00 3.01
307 308 2.356695 ACCCGTAAAAATGCGCCTATTC 59.643 45.455 4.18 0.00 0.00 1.75
308 309 2.371306 ACCCGTAAAAATGCGCCTATT 58.629 42.857 4.18 0.00 0.00 1.73
341 343 0.105593 AGCATCGCCACCTCATAGTG 59.894 55.000 0.00 0.00 37.51 2.74
362 364 4.754372 TTTGCTTGATATCATCGATGGC 57.246 40.909 24.61 17.63 0.00 4.40
425 429 1.002033 CAAGACAAACACAGGCTCAGC 60.002 52.381 0.00 0.00 0.00 4.26
444 448 0.623723 GGATCTGGCCAACCCTAACA 59.376 55.000 7.01 0.00 33.59 2.41
446 450 1.286305 GGGGATCTGGCCAACCCTAA 61.286 60.000 29.35 6.26 41.79 2.69
465 470 2.192624 CAAAGTTGGGCACGTTTTGAG 58.807 47.619 4.21 0.00 32.05 3.02
469 474 2.093106 TGTACAAAGTTGGGCACGTTT 58.907 42.857 0.00 0.00 0.00 3.60
476 481 7.040062 TGAGAAACCAATATGTACAAAGTTGGG 60.040 37.037 27.10 16.23 42.73 4.12
477 482 7.807907 GTGAGAAACCAATATGTACAAAGTTGG 59.192 37.037 24.33 24.33 43.75 3.77
494 499 6.238648 TTTCATAAGGAAGAGGTGAGAAACC 58.761 40.000 0.00 0.00 42.43 3.27
495 500 7.745620 TTTTCATAAGGAAGAGGTGAGAAAC 57.254 36.000 0.00 0.00 36.72 2.78
499 504 5.649395 TGCATTTTCATAAGGAAGAGGTGAG 59.351 40.000 0.00 0.00 36.72 3.51
567 576 5.163499 TGTTTCACATTACCGAAAAAGGCTT 60.163 36.000 0.00 0.00 33.17 4.35
568 577 4.339814 TGTTTCACATTACCGAAAAAGGCT 59.660 37.500 0.00 0.00 33.17 4.58
569 578 4.612943 TGTTTCACATTACCGAAAAAGGC 58.387 39.130 0.00 0.00 33.17 4.35
577 586 3.623863 AGCGTTTTGTTTCACATTACCG 58.376 40.909 0.00 0.00 0.00 4.02
583 592 4.489810 ACATTGAAGCGTTTTGTTTCACA 58.510 34.783 0.00 0.00 45.88 3.58
627 636 6.977244 AATCAGCAGGATAAATACCCCTAT 57.023 37.500 0.00 0.00 34.28 2.57
628 637 6.331572 TCAAATCAGCAGGATAAATACCCCTA 59.668 38.462 0.00 0.00 34.28 3.53
629 638 5.134339 TCAAATCAGCAGGATAAATACCCCT 59.866 40.000 0.00 0.00 34.28 4.79
630 639 5.385198 TCAAATCAGCAGGATAAATACCCC 58.615 41.667 0.00 0.00 34.28 4.95
631 640 6.716628 TGATCAAATCAGCAGGATAAATACCC 59.283 38.462 0.00 0.00 34.28 3.69
632 641 7.750229 TGATCAAATCAGCAGGATAAATACC 57.250 36.000 0.00 0.00 34.28 2.73
633 642 9.060347 TCTTGATCAAATCAGCAGGATAAATAC 57.940 33.333 9.88 0.00 40.94 1.89
634 643 9.803507 ATCTTGATCAAATCAGCAGGATAAATA 57.196 29.630 9.88 0.00 40.94 1.40
635 644 8.707796 ATCTTGATCAAATCAGCAGGATAAAT 57.292 30.769 9.88 0.00 40.94 1.40
636 645 9.803507 ATATCTTGATCAAATCAGCAGGATAAA 57.196 29.630 9.88 0.00 40.94 1.40
637 646 9.445878 GATATCTTGATCAAATCAGCAGGATAA 57.554 33.333 9.88 0.00 40.94 1.75
638 647 8.823794 AGATATCTTGATCAAATCAGCAGGATA 58.176 33.333 16.99 13.66 40.94 2.59
639 648 7.608376 CAGATATCTTGATCAAATCAGCAGGAT 59.392 37.037 16.99 12.28 40.94 3.24
640 649 6.935208 CAGATATCTTGATCAAATCAGCAGGA 59.065 38.462 16.99 6.76 40.94 3.86
641 650 6.935208 TCAGATATCTTGATCAAATCAGCAGG 59.065 38.462 16.99 2.02 40.94 4.85
642 651 7.658167 ACTCAGATATCTTGATCAAATCAGCAG 59.342 37.037 16.99 12.31 40.94 4.24
643 652 7.506971 ACTCAGATATCTTGATCAAATCAGCA 58.493 34.615 16.99 3.90 40.94 4.41
644 653 7.656542 TGACTCAGATATCTTGATCAAATCAGC 59.343 37.037 16.99 5.89 40.94 4.26
645 654 9.713713 ATGACTCAGATATCTTGATCAAATCAG 57.286 33.333 16.99 11.21 40.94 2.90
651 660 9.895138 TGAAAAATGACTCAGATATCTTGATCA 57.105 29.630 1.33 7.21 0.00 2.92
654 663 9.170734 CCTTGAAAAATGACTCAGATATCTTGA 57.829 33.333 1.33 3.82 0.00 3.02
655 664 8.404000 CCCTTGAAAAATGACTCAGATATCTTG 58.596 37.037 1.33 1.73 0.00 3.02
656 665 8.331740 TCCCTTGAAAAATGACTCAGATATCTT 58.668 33.333 1.33 0.00 0.00 2.40
657 666 7.865820 TCCCTTGAAAAATGACTCAGATATCT 58.134 34.615 0.00 0.00 0.00 1.98
658 667 8.511604 TTCCCTTGAAAAATGACTCAGATATC 57.488 34.615 0.00 0.00 0.00 1.63
659 668 8.884124 TTTCCCTTGAAAAATGACTCAGATAT 57.116 30.769 0.00 0.00 37.53 1.63
660 669 8.704849 TTTTCCCTTGAAAAATGACTCAGATA 57.295 30.769 0.00 0.00 45.12 1.98
661 670 7.288621 ACTTTTCCCTTGAAAAATGACTCAGAT 59.711 33.333 2.54 0.00 46.76 2.90
662 671 6.607198 ACTTTTCCCTTGAAAAATGACTCAGA 59.393 34.615 2.54 0.00 46.76 3.27
663 672 6.809869 ACTTTTCCCTTGAAAAATGACTCAG 58.190 36.000 2.54 0.00 46.76 3.35
664 673 6.790232 ACTTTTCCCTTGAAAAATGACTCA 57.210 33.333 2.54 0.00 46.76 3.41
665 674 9.196552 CATAACTTTTCCCTTGAAAAATGACTC 57.803 33.333 2.54 0.00 46.76 3.36
666 675 8.704668 ACATAACTTTTCCCTTGAAAAATGACT 58.295 29.630 13.62 0.00 46.76 3.41
667 676 8.887036 ACATAACTTTTCCCTTGAAAAATGAC 57.113 30.769 13.62 0.00 46.76 3.06
668 677 9.974980 GTACATAACTTTTCCCTTGAAAAATGA 57.025 29.630 13.62 0.00 46.76 2.57
669 678 9.981114 AGTACATAACTTTTCCCTTGAAAAATG 57.019 29.630 0.00 5.91 46.76 2.32
671 680 8.635328 GGAGTACATAACTTTTCCCTTGAAAAA 58.365 33.333 0.00 0.00 46.76 1.94
672 681 7.231925 GGGAGTACATAACTTTTCCCTTGAAAA 59.768 37.037 5.51 1.07 45.72 2.29
673 682 6.717997 GGGAGTACATAACTTTTCCCTTGAAA 59.282 38.462 5.51 0.00 39.07 2.69
674 683 6.045106 AGGGAGTACATAACTTTTCCCTTGAA 59.955 38.462 8.84 0.00 44.36 2.69
675 684 5.550403 AGGGAGTACATAACTTTTCCCTTGA 59.450 40.000 8.84 0.00 44.36 3.02
676 685 5.816682 AGGGAGTACATAACTTTTCCCTTG 58.183 41.667 8.84 0.00 44.36 3.61
677 686 5.045066 GGAGGGAGTACATAACTTTTCCCTT 60.045 44.000 14.42 1.78 45.89 3.95
679 688 4.682589 CGGAGGGAGTACATAACTTTTCCC 60.683 50.000 4.73 4.73 39.42 3.97
680 689 4.081254 ACGGAGGGAGTACATAACTTTTCC 60.081 45.833 0.00 0.00 39.07 3.13
681 690 5.082251 ACGGAGGGAGTACATAACTTTTC 57.918 43.478 0.00 0.00 39.07 2.29
682 691 5.247792 AGAACGGAGGGAGTACATAACTTTT 59.752 40.000 0.00 0.00 39.07 2.27
683 692 4.776308 AGAACGGAGGGAGTACATAACTTT 59.224 41.667 0.00 0.00 39.07 2.66
684 693 4.351127 AGAACGGAGGGAGTACATAACTT 58.649 43.478 0.00 0.00 39.07 2.66
685 694 3.978610 AGAACGGAGGGAGTACATAACT 58.021 45.455 0.00 0.00 42.80 2.24
686 695 5.841957 TTAGAACGGAGGGAGTACATAAC 57.158 43.478 0.00 0.00 0.00 1.89
687 696 6.855763 TTTTAGAACGGAGGGAGTACATAA 57.144 37.500 0.00 0.00 0.00 1.90
688 697 8.000709 TCTATTTTAGAACGGAGGGAGTACATA 58.999 37.037 0.00 0.00 0.00 2.29
689 698 5.952347 ATTTTAGAACGGAGGGAGTACAT 57.048 39.130 0.00 0.00 0.00 2.29
690 699 6.189859 TCTATTTTAGAACGGAGGGAGTACA 58.810 40.000 0.00 0.00 0.00 2.90
691 700 6.705863 TCTATTTTAGAACGGAGGGAGTAC 57.294 41.667 0.00 0.00 0.00 2.73
692 701 7.014038 GTCATCTATTTTAGAACGGAGGGAGTA 59.986 40.741 0.00 0.00 38.50 2.59
693 702 5.897824 TCATCTATTTTAGAACGGAGGGAGT 59.102 40.000 0.00 0.00 38.50 3.85
694 703 6.041069 AGTCATCTATTTTAGAACGGAGGGAG 59.959 42.308 0.00 0.00 38.50 4.30
695 704 5.897824 AGTCATCTATTTTAGAACGGAGGGA 59.102 40.000 0.00 0.00 38.50 4.20
696 705 6.163135 AGTCATCTATTTTAGAACGGAGGG 57.837 41.667 0.00 0.00 38.50 4.30
697 706 6.806751 TGAGTCATCTATTTTAGAACGGAGG 58.193 40.000 0.00 0.00 38.50 4.30
698 707 8.879342 ATTGAGTCATCTATTTTAGAACGGAG 57.121 34.615 0.00 0.00 38.50 4.63
699 708 9.667107 AAATTGAGTCATCTATTTTAGAACGGA 57.333 29.630 0.00 0.00 37.52 4.69
744 753 9.502035 TCTATTTTCTACTCCCTCTATTCCAAA 57.498 33.333 0.00 0.00 0.00 3.28
745 754 9.502035 TTCTATTTTCTACTCCCTCTATTCCAA 57.498 33.333 0.00 0.00 0.00 3.53
746 755 9.502035 TTTCTATTTTCTACTCCCTCTATTCCA 57.498 33.333 0.00 0.00 0.00 3.53
747 756 9.990360 CTTTCTATTTTCTACTCCCTCTATTCC 57.010 37.037 0.00 0.00 0.00 3.01
752 761 9.898152 CATTTCTTTCTATTTTCTACTCCCTCT 57.102 33.333 0.00 0.00 0.00 3.69
753 762 9.674068 ACATTTCTTTCTATTTTCTACTCCCTC 57.326 33.333 0.00 0.00 0.00 4.30
777 786 4.328536 AGTTGGTCAGTGTTTGTGTTACA 58.671 39.130 0.00 0.00 0.00 2.41
789 798 0.320697 GGCCGACTAAGTTGGTCAGT 59.679 55.000 18.19 0.00 41.11 3.41
809 818 2.370445 CGGGATCAAGAGGCCACCT 61.370 63.158 5.01 0.00 36.03 4.00
866 875 2.681976 CGATTGACAGGGAAGCTTGGAT 60.682 50.000 2.10 0.00 0.00 3.41
928 937 2.946990 GAGTAGACGAAGGAGCTAAGCT 59.053 50.000 0.00 0.00 43.88 3.74
952 961 3.664107 TCAAGAGAGGGAATCAAACGTG 58.336 45.455 0.00 0.00 0.00 4.49
958 967 2.697751 GCTAGCTCAAGAGAGGGAATCA 59.302 50.000 7.70 0.00 42.33 2.57
959 968 2.965147 AGCTAGCTCAAGAGAGGGAATC 59.035 50.000 12.68 0.00 42.33 2.52
968 977 1.388065 GGCTCGGAGCTAGCTCAAGA 61.388 60.000 38.32 32.95 44.40 3.02
971 980 1.380515 AAGGCTCGGAGCTAGCTCA 60.381 57.895 38.32 22.64 44.40 4.26
1007 1016 4.292178 CGATCAGAGGGGAGGCGC 62.292 72.222 0.00 0.00 0.00 6.53
1008 1017 4.292178 GCGATCAGAGGGGAGGCG 62.292 72.222 0.00 0.00 0.00 5.52
1009 1018 4.292178 CGCGATCAGAGGGGAGGC 62.292 72.222 0.00 0.00 0.00 4.70
1015 1024 1.591059 CAAGGAGCGCGATCAGAGG 60.591 63.158 27.12 8.41 0.00 3.69
1017 1026 0.737367 CAACAAGGAGCGCGATCAGA 60.737 55.000 27.12 0.00 0.00 3.27
1146 1155 0.034059 CACCGAGCTTGTCTCCAACT 59.966 55.000 0.00 0.00 38.62 3.16
1171 1180 5.221130 GTGTGAAGTAGTAGTGTTGAGACC 58.779 45.833 0.00 0.00 0.00 3.85
1172 1181 4.910456 CGTGTGAAGTAGTAGTGTTGAGAC 59.090 45.833 0.00 0.00 0.00 3.36
1173 1182 4.023450 CCGTGTGAAGTAGTAGTGTTGAGA 60.023 45.833 0.00 0.00 0.00 3.27
1174 1183 4.227538 CCGTGTGAAGTAGTAGTGTTGAG 58.772 47.826 0.00 0.00 0.00 3.02
1178 1187 5.972107 ATAACCGTGTGAAGTAGTAGTGT 57.028 39.130 0.00 0.00 0.00 3.55
1183 1192 5.613329 TCCAAAATAACCGTGTGAAGTAGT 58.387 37.500 0.00 0.00 0.00 2.73
1187 1196 4.082787 AGCATCCAAAATAACCGTGTGAAG 60.083 41.667 0.00 0.00 0.00 3.02
1189 1199 3.417101 AGCATCCAAAATAACCGTGTGA 58.583 40.909 0.00 0.00 0.00 3.58
1190 1200 3.848272 AGCATCCAAAATAACCGTGTG 57.152 42.857 0.00 0.00 0.00 3.82
1195 1205 7.029563 CAGTTGTTCTAGCATCCAAAATAACC 58.970 38.462 0.00 0.00 0.00 2.85
1196 1206 7.029563 CCAGTTGTTCTAGCATCCAAAATAAC 58.970 38.462 0.00 0.00 0.00 1.89
1198 1208 6.150976 CACCAGTTGTTCTAGCATCCAAAATA 59.849 38.462 0.00 0.00 0.00 1.40
1204 1214 3.059352 ACACCAGTTGTTCTAGCATCC 57.941 47.619 0.00 0.00 33.09 3.51
1230 1240 4.021544 ACACCAGTTGTTCTGCTTTCAAAA 60.022 37.500 0.00 0.00 42.38 2.44
1231 1241 3.509575 ACACCAGTTGTTCTGCTTTCAAA 59.490 39.130 0.00 0.00 42.38 2.69
1232 1242 3.088532 ACACCAGTTGTTCTGCTTTCAA 58.911 40.909 0.00 0.00 42.38 2.69
1234 1244 3.438360 CAACACCAGTTGTTCTGCTTTC 58.562 45.455 0.41 0.00 46.05 2.62
1235 1245 3.508744 CAACACCAGTTGTTCTGCTTT 57.491 42.857 0.41 0.00 46.05 3.51
1245 1255 1.612513 TGGCTGACCAACACCAGTT 59.387 52.632 0.00 0.00 45.37 3.16
1246 1256 3.330192 TGGCTGACCAACACCAGT 58.670 55.556 0.00 0.00 45.37 4.00
1253 1263 9.766766 TCCAATTAGGTTTTAGTGGCTGACCAA 62.767 40.741 0.00 0.00 43.24 3.67
1254 1264 4.650972 ATTAGGTTTTAGTGGCTGACCA 57.349 40.909 0.00 0.00 46.51 4.02
1255 1265 4.157840 CCAATTAGGTTTTAGTGGCTGACC 59.842 45.833 0.00 0.00 0.00 4.02
1256 1266 5.007682 TCCAATTAGGTTTTAGTGGCTGAC 58.992 41.667 0.00 0.00 39.02 3.51
1257 1267 5.007682 GTCCAATTAGGTTTTAGTGGCTGA 58.992 41.667 0.00 0.00 39.02 4.26
1258 1268 4.157840 GGTCCAATTAGGTTTTAGTGGCTG 59.842 45.833 0.00 0.00 39.02 4.85
1259 1269 4.341487 GGTCCAATTAGGTTTTAGTGGCT 58.659 43.478 0.00 0.00 39.02 4.75
1260 1270 3.446161 GGGTCCAATTAGGTTTTAGTGGC 59.554 47.826 0.00 0.00 39.02 5.01
1261 1271 4.930696 AGGGTCCAATTAGGTTTTAGTGG 58.069 43.478 0.00 0.00 39.02 4.00
1262 1272 5.566469 TGAGGGTCCAATTAGGTTTTAGTG 58.434 41.667 0.00 0.00 39.02 2.74
1263 1273 5.312443 ACTGAGGGTCCAATTAGGTTTTAGT 59.688 40.000 0.00 0.00 39.02 2.24
1264 1274 5.816682 ACTGAGGGTCCAATTAGGTTTTAG 58.183 41.667 0.00 0.00 39.02 1.85
1265 1275 5.853572 ACTGAGGGTCCAATTAGGTTTTA 57.146 39.130 0.00 0.00 39.02 1.52
1266 1276 4.741928 ACTGAGGGTCCAATTAGGTTTT 57.258 40.909 0.00 0.00 39.02 2.43
1267 1277 4.741928 AACTGAGGGTCCAATTAGGTTT 57.258 40.909 0.00 0.00 39.02 3.27
1268 1278 4.141018 ACAAACTGAGGGTCCAATTAGGTT 60.141 41.667 0.00 0.00 39.02 3.50
1269 1279 3.397955 ACAAACTGAGGGTCCAATTAGGT 59.602 43.478 0.00 0.00 39.02 3.08
1270 1280 4.034285 ACAAACTGAGGGTCCAATTAGG 57.966 45.455 0.00 0.00 39.47 2.69
1271 1281 5.048713 GTGAACAAACTGAGGGTCCAATTAG 60.049 44.000 0.00 0.00 0.00 1.73
1272 1282 4.825085 GTGAACAAACTGAGGGTCCAATTA 59.175 41.667 0.00 0.00 0.00 1.40
1273 1283 3.636764 GTGAACAAACTGAGGGTCCAATT 59.363 43.478 0.00 0.00 0.00 2.32
1274 1284 3.117512 AGTGAACAAACTGAGGGTCCAAT 60.118 43.478 0.00 0.00 0.00 3.16
1275 1285 2.241176 AGTGAACAAACTGAGGGTCCAA 59.759 45.455 0.00 0.00 0.00 3.53
1294 1304 2.947652 GTCATGTGCATGCTAATCCAGT 59.052 45.455 20.33 0.00 38.65 4.00
1295 1305 2.292569 GGTCATGTGCATGCTAATCCAG 59.707 50.000 20.33 2.65 38.65 3.86
1296 1306 2.092267 AGGTCATGTGCATGCTAATCCA 60.092 45.455 20.33 8.02 38.65 3.41
1297 1307 2.579873 AGGTCATGTGCATGCTAATCC 58.420 47.619 20.33 13.09 38.65 3.01
1298 1308 5.756195 TTAAGGTCATGTGCATGCTAATC 57.244 39.130 20.33 7.45 38.65 1.75
1299 1309 6.720112 AATTAAGGTCATGTGCATGCTAAT 57.280 33.333 20.33 9.53 38.65 1.73
1300 1310 7.285172 ACATAATTAAGGTCATGTGCATGCTAA 59.715 33.333 20.33 7.33 38.65 3.09
1301 1311 6.772233 ACATAATTAAGGTCATGTGCATGCTA 59.228 34.615 20.33 8.52 38.65 3.49
1302 1312 5.595542 ACATAATTAAGGTCATGTGCATGCT 59.404 36.000 20.33 0.00 38.65 3.79
1303 1313 5.835257 ACATAATTAAGGTCATGTGCATGC 58.165 37.500 11.82 11.82 38.65 4.06
1304 1314 8.706492 AAAACATAATTAAGGTCATGTGCATG 57.294 30.769 5.86 5.86 40.09 4.06
1370 1380 9.362539 CAGAATAAACGTACTCCTAGCTAAAAA 57.637 33.333 0.00 0.00 0.00 1.94
1371 1381 7.490402 GCAGAATAAACGTACTCCTAGCTAAAA 59.510 37.037 0.00 0.00 0.00 1.52
1372 1382 6.976925 GCAGAATAAACGTACTCCTAGCTAAA 59.023 38.462 0.00 0.00 0.00 1.85
1373 1383 6.320672 AGCAGAATAAACGTACTCCTAGCTAA 59.679 38.462 0.00 0.00 0.00 3.09
1374 1384 5.826737 AGCAGAATAAACGTACTCCTAGCTA 59.173 40.000 0.00 0.00 0.00 3.32
1375 1385 4.645588 AGCAGAATAAACGTACTCCTAGCT 59.354 41.667 0.00 0.00 0.00 3.32
1376 1386 4.934515 AGCAGAATAAACGTACTCCTAGC 58.065 43.478 0.00 0.00 0.00 3.42
1377 1387 6.380095 AGAGCAGAATAAACGTACTCCTAG 57.620 41.667 0.00 0.00 0.00 3.02
1378 1388 6.561614 CAAGAGCAGAATAAACGTACTCCTA 58.438 40.000 0.00 0.00 0.00 2.94
1379 1389 5.411781 CAAGAGCAGAATAAACGTACTCCT 58.588 41.667 0.00 0.00 0.00 3.69
1380 1390 4.033014 GCAAGAGCAGAATAAACGTACTCC 59.967 45.833 0.00 0.00 41.58 3.85
1381 1391 5.132437 GCAAGAGCAGAATAAACGTACTC 57.868 43.478 0.00 0.00 41.58 2.59
1412 1422 9.461312 TGATTAGGACTTGTGCAATATAGTTTT 57.539 29.630 0.00 0.00 0.00 2.43
1413 1423 9.632638 ATGATTAGGACTTGTGCAATATAGTTT 57.367 29.630 0.00 0.00 0.00 2.66
1415 1425 9.712305 GTATGATTAGGACTTGTGCAATATAGT 57.288 33.333 0.00 0.00 0.00 2.12
1416 1426 9.710900 TGTATGATTAGGACTTGTGCAATATAG 57.289 33.333 0.00 0.00 0.00 1.31
1418 1428 8.840321 GTTGTATGATTAGGACTTGTGCAATAT 58.160 33.333 0.00 0.00 0.00 1.28
1419 1429 8.046708 AGTTGTATGATTAGGACTTGTGCAATA 58.953 33.333 0.00 0.00 0.00 1.90
1420 1430 6.886459 AGTTGTATGATTAGGACTTGTGCAAT 59.114 34.615 0.00 0.00 0.00 3.56
1421 1431 6.237901 AGTTGTATGATTAGGACTTGTGCAA 58.762 36.000 0.00 0.00 0.00 4.08
1422 1432 5.804639 AGTTGTATGATTAGGACTTGTGCA 58.195 37.500 0.00 0.00 0.00 4.57
1423 1433 6.109359 AGAGTTGTATGATTAGGACTTGTGC 58.891 40.000 0.00 0.00 0.00 4.57
1424 1434 7.604164 ACAAGAGTTGTATGATTAGGACTTGTG 59.396 37.037 0.00 0.00 43.27 3.33
1425 1435 7.680730 ACAAGAGTTGTATGATTAGGACTTGT 58.319 34.615 0.00 0.00 43.27 3.16
1426 1436 8.553459 AACAAGAGTTGTATGATTAGGACTTG 57.447 34.615 0.00 0.00 44.59 3.16
1427 1437 7.824779 GGAACAAGAGTTGTATGATTAGGACTT 59.175 37.037 0.00 0.00 44.59 3.01
1428 1438 7.038302 TGGAACAAGAGTTGTATGATTAGGACT 60.038 37.037 0.00 0.00 44.59 3.85
1429 1439 7.103641 TGGAACAAGAGTTGTATGATTAGGAC 58.896 38.462 0.00 0.00 44.59 3.85
1430 1440 7.252612 TGGAACAAGAGTTGTATGATTAGGA 57.747 36.000 0.00 0.00 44.59 2.94
1455 1465 9.883142 TCACTAACAATTCCAAAAAGAATGTTT 57.117 25.926 0.00 0.00 36.59 2.83
1456 1466 9.313118 GTCACTAACAATTCCAAAAAGAATGTT 57.687 29.630 0.00 0.00 36.59 2.71
1457 1467 8.474025 TGTCACTAACAATTCCAAAAAGAATGT 58.526 29.630 0.00 0.00 36.59 2.71
1458 1468 8.870160 TGTCACTAACAATTCCAAAAAGAATG 57.130 30.769 0.00 0.00 36.59 2.67
1496 1506 9.431887 GTGTTGTTACCATTTCTAGTTCATAGA 57.568 33.333 0.00 0.00 38.81 1.98
1497 1507 8.380644 CGTGTTGTTACCATTTCTAGTTCATAG 58.619 37.037 0.00 0.00 0.00 2.23
1498 1508 7.332430 CCGTGTTGTTACCATTTCTAGTTCATA 59.668 37.037 0.00 0.00 0.00 2.15
1499 1509 6.148811 CCGTGTTGTTACCATTTCTAGTTCAT 59.851 38.462 0.00 0.00 0.00 2.57
1500 1510 5.467399 CCGTGTTGTTACCATTTCTAGTTCA 59.533 40.000 0.00 0.00 0.00 3.18
1501 1511 5.697633 TCCGTGTTGTTACCATTTCTAGTTC 59.302 40.000 0.00 0.00 0.00 3.01
1502 1512 5.467735 GTCCGTGTTGTTACCATTTCTAGTT 59.532 40.000 0.00 0.00 0.00 2.24
1503 1513 4.992951 GTCCGTGTTGTTACCATTTCTAGT 59.007 41.667 0.00 0.00 0.00 2.57
1504 1514 5.235516 AGTCCGTGTTGTTACCATTTCTAG 58.764 41.667 0.00 0.00 0.00 2.43
1505 1515 5.217978 AGTCCGTGTTGTTACCATTTCTA 57.782 39.130 0.00 0.00 0.00 2.10
1506 1516 4.062991 GAGTCCGTGTTGTTACCATTTCT 58.937 43.478 0.00 0.00 0.00 2.52
1507 1517 3.810941 TGAGTCCGTGTTGTTACCATTTC 59.189 43.478 0.00 0.00 0.00 2.17
1508 1518 3.811083 TGAGTCCGTGTTGTTACCATTT 58.189 40.909 0.00 0.00 0.00 2.32
1509 1519 3.478857 TGAGTCCGTGTTGTTACCATT 57.521 42.857 0.00 0.00 0.00 3.16
1510 1520 3.596214 GATGAGTCCGTGTTGTTACCAT 58.404 45.455 0.00 0.00 0.00 3.55
1511 1521 2.608506 CGATGAGTCCGTGTTGTTACCA 60.609 50.000 0.00 0.00 0.00 3.25
1512 1522 1.990563 CGATGAGTCCGTGTTGTTACC 59.009 52.381 0.00 0.00 0.00 2.85
1513 1523 2.669364 ACGATGAGTCCGTGTTGTTAC 58.331 47.619 0.00 0.00 38.97 2.50
1515 1525 3.980583 ACGATGAGTCCGTGTTGTT 57.019 47.368 0.00 0.00 38.97 2.83
1521 1531 0.968901 TTAGGCCACGATGAGTCCGT 60.969 55.000 5.01 0.00 41.36 4.69
1522 1532 0.389391 ATTAGGCCACGATGAGTCCG 59.611 55.000 5.01 0.00 0.00 4.79
1523 1533 3.963428 ATATTAGGCCACGATGAGTCC 57.037 47.619 5.01 0.00 0.00 3.85
1524 1534 5.992217 AGAAAATATTAGGCCACGATGAGTC 59.008 40.000 5.01 0.00 0.00 3.36
1528 1538 4.516698 AGCAGAAAATATTAGGCCACGATG 59.483 41.667 5.01 0.00 0.00 3.84
1640 1650 2.177580 CGCTGTTGTCACCGTTGGT 61.178 57.895 0.00 0.00 35.62 3.67
1880 1902 0.385751 TCATCGGCGGATCAGAAGAC 59.614 55.000 7.21 0.00 0.00 3.01
1920 1942 3.671928 AGAAGAAAACGTACAACGATCGG 59.328 43.478 20.98 4.82 46.05 4.18
1929 1951 1.458445 GGCCGTCAGAAGAAAACGTAC 59.542 52.381 0.00 0.00 34.71 3.67
1981 2008 3.721035 TCATATCACATCAGGAAGCACG 58.279 45.455 0.00 0.00 0.00 5.34
2020 2047 2.150397 ACAAGTCACTCACGCTAACC 57.850 50.000 0.00 0.00 0.00 2.85
2024 2051 1.893137 TCCATACAAGTCACTCACGCT 59.107 47.619 0.00 0.00 0.00 5.07
2065 2092 9.241919 GAGGGGTTCCTATTACTTATACTAGAC 57.758 40.741 0.00 0.00 45.05 2.59
2073 2114 7.456902 GTCATATGGAGGGGTTCCTATTACTTA 59.543 40.741 2.13 0.00 46.92 2.24
2074 2115 6.272558 GTCATATGGAGGGGTTCCTATTACTT 59.727 42.308 2.13 0.00 46.92 2.24
2076 2117 5.337330 CGTCATATGGAGGGGTTCCTATTAC 60.337 48.000 2.13 0.00 46.92 1.89
2079 2120 3.173965 CGTCATATGGAGGGGTTCCTAT 58.826 50.000 2.13 0.00 46.92 2.57
2080 2121 2.605257 CGTCATATGGAGGGGTTCCTA 58.395 52.381 2.13 0.00 46.92 2.94
2081 2122 1.424638 CGTCATATGGAGGGGTTCCT 58.575 55.000 2.13 0.00 46.92 3.36
2082 2123 0.396811 CCGTCATATGGAGGGGTTCC 59.603 60.000 2.13 0.00 45.78 3.62
2099 2140 7.027161 CAGAATCCAAACTTATTTAACCACCG 58.973 38.462 0.00 0.00 0.00 4.94
2178 2220 4.569719 AGGCTTATCCTCTTTTTCGGAA 57.430 40.909 0.00 0.00 43.20 4.30
2196 2238 2.985512 ATTCGATGCAGAGGCGAGGC 62.986 60.000 0.00 0.00 45.35 4.70
2200 2242 0.788995 GATCATTCGATGCAGAGGCG 59.211 55.000 0.00 0.00 45.35 5.52
2202 2244 2.538512 TGGATCATTCGATGCAGAGG 57.461 50.000 0.00 0.00 44.18 3.69
2240 2287 6.422400 TGTTCGGCTGTTGGATTTTATTTTTC 59.578 34.615 0.00 0.00 0.00 2.29
2246 2293 4.920640 TTTGTTCGGCTGTTGGATTTTA 57.079 36.364 0.00 0.00 0.00 1.52
2247 2294 3.810310 TTTGTTCGGCTGTTGGATTTT 57.190 38.095 0.00 0.00 0.00 1.82
2248 2295 4.202202 TGAATTTGTTCGGCTGTTGGATTT 60.202 37.500 0.00 0.00 0.00 2.17
2249 2296 3.320541 TGAATTTGTTCGGCTGTTGGATT 59.679 39.130 0.00 0.00 0.00 3.01
2255 2302 2.028130 TGGTTGAATTTGTTCGGCTGT 58.972 42.857 0.00 0.00 0.00 4.40
2258 2305 3.363341 TTCTGGTTGAATTTGTTCGGC 57.637 42.857 0.00 0.00 0.00 5.54
2267 2314 8.923270 TCAGGTATTTTCTTTTTCTGGTTGAAT 58.077 29.630 0.00 0.00 34.24 2.57
2268 2315 8.299990 TCAGGTATTTTCTTTTTCTGGTTGAA 57.700 30.769 0.00 0.00 0.00 2.69
2269 2316 7.777910 TCTCAGGTATTTTCTTTTTCTGGTTGA 59.222 33.333 0.00 0.00 0.00 3.18
2270 2317 7.862873 GTCTCAGGTATTTTCTTTTTCTGGTTG 59.137 37.037 0.00 0.00 0.00 3.77
2271 2318 7.014326 GGTCTCAGGTATTTTCTTTTTCTGGTT 59.986 37.037 0.00 0.00 0.00 3.67
2272 2319 6.490381 GGTCTCAGGTATTTTCTTTTTCTGGT 59.510 38.462 0.00 0.00 0.00 4.00
2273 2320 6.490040 TGGTCTCAGGTATTTTCTTTTTCTGG 59.510 38.462 0.00 0.00 0.00 3.86
2274 2321 7.363431 GTGGTCTCAGGTATTTTCTTTTTCTG 58.637 38.462 0.00 0.00 0.00 3.02
2275 2322 6.204882 CGTGGTCTCAGGTATTTTCTTTTTCT 59.795 38.462 0.00 0.00 0.00 2.52
2276 2323 6.017357 ACGTGGTCTCAGGTATTTTCTTTTTC 60.017 38.462 0.00 0.00 39.83 2.29
2277 2324 5.826208 ACGTGGTCTCAGGTATTTTCTTTTT 59.174 36.000 0.00 0.00 39.83 1.94
2278 2325 5.238650 CACGTGGTCTCAGGTATTTTCTTTT 59.761 40.000 7.95 0.00 39.64 2.27
2279 2326 4.755123 CACGTGGTCTCAGGTATTTTCTTT 59.245 41.667 7.95 0.00 39.64 2.52
2280 2327 4.315803 CACGTGGTCTCAGGTATTTTCTT 58.684 43.478 7.95 0.00 39.64 2.52
2281 2328 3.864921 GCACGTGGTCTCAGGTATTTTCT 60.865 47.826 18.88 0.00 39.64 2.52
2282 2329 2.415512 GCACGTGGTCTCAGGTATTTTC 59.584 50.000 18.88 0.00 39.64 2.29
2283 2330 2.423577 GCACGTGGTCTCAGGTATTTT 58.576 47.619 18.88 0.00 39.64 1.82
2284 2331 1.338769 GGCACGTGGTCTCAGGTATTT 60.339 52.381 18.88 0.00 39.64 1.40
2285 2332 0.249398 GGCACGTGGTCTCAGGTATT 59.751 55.000 18.88 0.00 39.64 1.89
2286 2333 0.614979 AGGCACGTGGTCTCAGGTAT 60.615 55.000 18.88 0.00 39.64 2.73
2287 2334 1.228769 AGGCACGTGGTCTCAGGTA 60.229 57.895 18.88 0.00 39.64 3.08
2288 2335 2.524394 AGGCACGTGGTCTCAGGT 60.524 61.111 18.88 0.00 42.00 4.00
2298 2345 1.647629 CTACTATCGCGAGGCACGT 59.352 57.895 16.66 9.18 44.60 4.49
2299 2346 1.726322 GCTACTATCGCGAGGCACG 60.726 63.158 16.66 0.00 45.66 5.34
2300 2347 0.386226 GAGCTACTATCGCGAGGCAC 60.386 60.000 16.66 8.49 0.00 5.01
2301 2348 1.516365 GGAGCTACTATCGCGAGGCA 61.516 60.000 16.66 0.78 0.00 4.75
2302 2349 1.210672 GGAGCTACTATCGCGAGGC 59.789 63.158 16.66 13.14 0.00 4.70
2303 2350 0.238817 GTGGAGCTACTATCGCGAGG 59.761 60.000 16.66 12.65 0.00 4.63
2304 2351 0.238817 GGTGGAGCTACTATCGCGAG 59.761 60.000 16.66 4.02 0.00 5.03
2356 2403 7.865385 GCTGTGTATTTTTCACTCAATGGTTAA 59.135 33.333 0.00 0.00 36.83 2.01
2357 2404 7.230510 AGCTGTGTATTTTTCACTCAATGGTTA 59.769 33.333 0.00 0.00 36.83 2.85
2361 2408 7.935338 AAAGCTGTGTATTTTTCACTCAATG 57.065 32.000 0.00 0.00 36.83 2.82
2363 2410 9.462174 CATAAAAGCTGTGTATTTTTCACTCAA 57.538 29.630 0.00 0.00 36.83 3.02
2364 2411 7.594758 GCATAAAAGCTGTGTATTTTTCACTCA 59.405 33.333 0.00 0.00 36.83 3.41
2365 2412 7.809806 AGCATAAAAGCTGTGTATTTTTCACTC 59.190 33.333 0.00 0.00 44.66 3.51
2366 2413 7.661040 AGCATAAAAGCTGTGTATTTTTCACT 58.339 30.769 0.00 0.00 44.66 3.41
2367 2414 7.873739 AGCATAAAAGCTGTGTATTTTTCAC 57.126 32.000 0.00 0.00 44.66 3.18
2368 2415 9.624697 CTTAGCATAAAAGCTGTGTATTTTTCA 57.375 29.630 0.00 0.00 46.11 2.69
2369 2416 8.587111 GCTTAGCATAAAAGCTGTGTATTTTTC 58.413 33.333 0.00 0.00 46.11 2.29
2384 2431 5.815581 TCCTTCTTGAAGGCTTAGCATAAA 58.184 37.500 21.16 0.00 39.80 1.40
2385 2515 5.435686 TCCTTCTTGAAGGCTTAGCATAA 57.564 39.130 21.16 1.88 39.80 1.90
2388 2518 3.788227 TTCCTTCTTGAAGGCTTAGCA 57.212 42.857 21.16 3.80 39.80 3.49
2425 2555 3.634397 ATGGTTGGACTCGTCATCATT 57.366 42.857 0.00 0.00 0.00 2.57
2434 2564 5.355596 CAAGACTGATCTATGGTTGGACTC 58.644 45.833 0.00 0.00 33.57 3.36
2438 2568 3.455910 TCCCAAGACTGATCTATGGTTGG 59.544 47.826 0.00 1.25 34.13 3.77
2442 2572 6.261826 GTGAAAATCCCAAGACTGATCTATGG 59.738 42.308 0.00 0.00 33.57 2.74
2448 2578 3.564352 GGGGTGAAAATCCCAAGACTGAT 60.564 47.826 3.37 0.00 46.26 2.90
2451 2581 2.604912 GGGGTGAAAATCCCAAGACT 57.395 50.000 3.37 0.00 46.26 3.24
2458 2588 0.246360 CGGCTTTGGGGTGAAAATCC 59.754 55.000 0.00 0.00 0.00 3.01
2464 2594 0.536460 GAAACTCGGCTTTGGGGTGA 60.536 55.000 0.00 0.00 0.00 4.02
2465 2595 1.852067 CGAAACTCGGCTTTGGGGTG 61.852 60.000 0.00 0.00 36.00 4.61
2467 2597 0.676782 ATCGAAACTCGGCTTTGGGG 60.677 55.000 0.00 0.00 40.88 4.96
2475 2606 0.739813 GGTGGTGGATCGAAACTCGG 60.740 60.000 0.00 0.00 40.88 4.63
2499 2630 2.502510 GCGCATGCGTGTCTTTGG 60.503 61.111 37.54 10.41 42.09 3.28
2509 2640 2.739214 CTATGTCGAAGCGCGCATGC 62.739 60.000 35.10 20.17 40.61 4.06
2515 2649 1.191204 GATCAAGCTATGTCGAAGCGC 59.809 52.381 0.00 0.00 44.87 5.92
2516 2650 1.789464 GGATCAAGCTATGTCGAAGCG 59.211 52.381 2.08 0.00 44.87 4.68
2519 2653 2.949644 TCTCGGATCAAGCTATGTCGAA 59.050 45.455 0.00 0.00 31.24 3.71
2530 2664 3.515502 AGAAACACAGGATCTCGGATCAA 59.484 43.478 13.59 0.00 0.00 2.57
2536 2670 3.315470 TCCGATAGAAACACAGGATCTCG 59.685 47.826 0.00 0.00 39.76 4.04
2537 2671 4.920640 TCCGATAGAAACACAGGATCTC 57.079 45.455 0.00 0.00 39.76 2.75
2542 2676 3.063997 GCACAATCCGATAGAAACACAGG 59.936 47.826 0.00 0.00 39.76 4.00
2543 2677 3.684305 TGCACAATCCGATAGAAACACAG 59.316 43.478 0.00 0.00 39.76 3.66
2549 2683 3.616821 CGAGTTTGCACAATCCGATAGAA 59.383 43.478 0.00 0.00 39.76 2.10
2551 2685 2.930040 ACGAGTTTGCACAATCCGATAG 59.070 45.455 0.00 0.00 0.00 2.08
2552 2686 2.927477 GACGAGTTTGCACAATCCGATA 59.073 45.455 0.00 0.00 0.00 2.92
2556 2690 0.865769 ACGACGAGTTTGCACAATCC 59.134 50.000 0.00 0.00 0.00 3.01
2571 2705 0.714439 GTAGAAGCGCCTTCAACGAC 59.286 55.000 17.76 9.01 42.37 4.34
2581 2715 2.799412 CAAGAGATGATGGTAGAAGCGC 59.201 50.000 0.00 0.00 0.00 5.92
2584 2718 6.514212 CGGTAGTCAAGAGATGATGGTAGAAG 60.514 46.154 0.00 0.00 40.97 2.85
2585 2719 5.299531 CGGTAGTCAAGAGATGATGGTAGAA 59.700 44.000 0.00 0.00 40.97 2.10
2592 2726 2.033550 GCGTCGGTAGTCAAGAGATGAT 59.966 50.000 0.00 0.00 40.97 2.45
2598 2732 1.642037 CGAGGCGTCGGTAGTCAAGA 61.642 60.000 20.58 0.00 42.87 3.02
2617 2755 5.172771 GGAATAAGCGTTCGTGTGTATAGAC 59.827 44.000 0.00 0.00 0.00 2.59
2630 2768 3.134804 AGGTGCTCATAGGAATAAGCGTT 59.865 43.478 0.00 0.00 37.57 4.84
2640 2778 3.691609 GGTCTTTTGAAGGTGCTCATAGG 59.308 47.826 0.00 0.00 0.00 2.57
2677 2815 7.329226 CCTAAACTTGGCATGAGTGTTATTTTG 59.671 37.037 7.45 0.00 0.00 2.44
2682 2821 5.001232 GTCCTAAACTTGGCATGAGTGTTA 58.999 41.667 7.45 1.82 0.00 2.41
2699 2838 5.836024 ACTCACATGGGTTTAAGTCCTAA 57.164 39.130 0.00 0.00 0.00 2.69
2702 2841 4.394729 TCAACTCACATGGGTTTAAGTCC 58.605 43.478 0.00 0.00 0.00 3.85
2746 2885 5.490159 TGCACACTGAATGTTGATCAGATA 58.510 37.500 10.27 0.00 45.74 1.98
2747 2886 4.329392 TGCACACTGAATGTTGATCAGAT 58.671 39.130 10.27 0.00 45.74 2.90
2753 2892 4.652421 ACAATTGCACACTGAATGTTGA 57.348 36.364 5.05 0.00 40.64 3.18
2785 2924 9.931698 TGACCAGAACTAGGTATAATAAGAAGA 57.068 33.333 0.00 0.00 40.09 2.87
2794 2933 6.773200 CACTCTCATGACCAGAACTAGGTATA 59.227 42.308 0.00 0.00 40.09 1.47
2795 2934 5.596361 CACTCTCATGACCAGAACTAGGTAT 59.404 44.000 0.00 0.00 40.09 2.73
2796 2935 4.950475 CACTCTCATGACCAGAACTAGGTA 59.050 45.833 0.00 0.00 40.09 3.08
2805 2944 4.732672 TCAATCTCACTCTCATGACCAG 57.267 45.455 0.00 0.00 0.00 4.00
2814 2953 3.542648 CCACATGCATCAATCTCACTCT 58.457 45.455 0.00 0.00 0.00 3.24
2815 2954 2.617308 CCCACATGCATCAATCTCACTC 59.383 50.000 0.00 0.00 0.00 3.51
2816 2955 2.651455 CCCACATGCATCAATCTCACT 58.349 47.619 0.00 0.00 0.00 3.41
2823 2962 0.322906 TAACCGCCCACATGCATCAA 60.323 50.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.