>input_sequence_66182
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------------------------------------------------ATGGCCTGCGCCTCCCCTCTGATCGCGCTCCT
TGTTGTCCTGGGTTGCGCTGCGGCGGCCTCTGCGGCAACGTTCACCGTCGGAGACGGGCAAGGGTGGACGACCGGCGCCA
ACTACGCCACCTGGGCCAGCGGCAAGACCTTCGCAGTTGGAGACAAGCTCGGTGAGTCCGGTCTCAACACTACTAC-TTC
ACACGGTTATTTTGGATGCTAGAACAACTGGTGTTTTTTTTTTGAAAGCAGAACAACTGGTGTTGGTCAGCCACTAAAAC
CTAATTGGACCCTCAGTTTGTTCACTGGATTAGCATGCACATGACCTTAATTATGTTTTTTTCTTATGCTCAAAAAAAAA
TTATGTTTTTTTCTTCATTTTTTTAGCTAGGAGTACGTTTATTCTGCTCTTGCACACAAAAAAAACTATATTGCACAAGT
CCTAATCATACAACTCTTGTTCCAAAACATTCTTTTTGGAATTGTTAGTGACAATTAATTTCTGTTCTATGAACTAGAAA
TGGTAACAACACGGACTCATCGTGGCCTAATATTTTCTGCTCTCTGTTTTCTCAGTGTTCAACTACGCCAGCCAGGCCCA
CACAGTGACCGAAGTCACCAAGAGCGAGTACGACGCCTGCTCCAGCAACACCAACGGTGACAACAGCGGCGCCACCACCA
TGACCCTCAAAGCCGGCGCGAACTACTACATCTGCACCATCGGCACCCACTGCGCCGCCGGCATGAAGCTCGCCGTCACA
GCCGGCGACTCCAGCC------CCGGTACCCCCGCGGCCGGGACGCCGCCTACCAACCCGTCCGGGTCCGGCGGCTAC--
----CGCATGGAGGTCGGCCCCATTCTCGCGGCCACCGCTGGCGTCCTCCTCAAGCTCGCCGTCTTCTGA----------
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>chr6B_1_TraesCS6B01G327200
TTGCATGAGAGAATCCTCACGGTCGATATGTTGGCTATTTGTGGCTGGCCACATGACCCAAGATGCCAGCTTTGTCTCCA
GGCTCCAAACGGCGACCCATCTTTGCAAGGATTGCCCCTTCTCAGTCGCTGCCTAGAACCATGTGTCCACCTAGACACAC
AACGACTTGCTAGTCTCTGGTTTCCTATCGGTCCCTGGTAATGTCTCCTGCTGATGGGATGAGTTGATCGCAAAAGGAGG
CGAAGCAGGGCCGCATGCGTCATAGAGGTGGGTTGATCTATACCTTGTGAAACATTTGGAAGGAGAGGAATAGGCGCATT
TTTAC-GGGTTACCGCATGACGCACTATGAGGTGGCGATGCTAGCCATCGATGATATCAAGCAAAAAGAGAGGGCGTTTG
G--TAGTCGTGCCTCATGGTGGGTATTGGCTGAGCCTGTGTTTGTCTTGTTAGGGTTGGCCA-GATCCCCTCAAAACGTG
CCCAACTTTGTACATATTGGTTTCTCACCTCTTCCTT----ATGAAAATGCAATGCTCCTGCTGGTTCCTCGGGAAAAAT
AAAAAACAGAGAAAAAAGCCTTTTTCGGTAATGTGAAACAAAACGCTTCAATGTATTATTTTTTATTTTATTATTATAGG
GGTATTTATCCTGCTGATTTGATCAAGATATCTGAGTCATTTTTCAAGGGAAAAGTTATGTACTCCCTCCGTTCTAAAAT
AGATGACTCAATTTTGTATTAATTTTTTTTATTTTGGAATAGAGGGAGTAGAAAATAGAAAGAAATGTAACACAAACACT
GACCAACTTAGTCGGCCAGGTGGCCTCTTGATCCCGTGACAAGCACGTGACCCATATGGCTCTATAAAACGACCATCCAA
GCTTCCCTGTCAATCGCGCAATCCAGTTAGTAGCGAGAGACATCGATCGATAGCCAAGCTTAGCTCCTTCGTCTACTCCA
CACGTTTGATTCCCTCTCTTGAGCTAGCTCCGAGCCTTCACTTCGACCATGGCCTGCGCCTCCCCTCTGATCGCGCTCCT
TGTTGTCCTGGGTTGCGCTGCGGCGGCCTCTGCGGCAACGTTCACCGTCGGAGACGGGCAAGGGTGGACGACCGGCGCCA
ACTACGCCACCTGGGCCAGCGGCAAGACCTTCGCAGTTGGAGACAAGCTCGGTGAGTCCGGTCTCAACACTACTAC-TTC
ACACGGTTATTTTGGATGCTAGAACAACTGGTGTTTTTTTTTTGAAAGCAGAACAACTGGTGTTGGTCAGCCACTAAAAC
CTAATTGGACCCTCAGTTTGTTCACTGGATTAGCATGCACATGACCTTAATTATGTTTTTTTCTTATGCTCAAAAAAAAA
TTATGTTTTTTTCTTCATTTTTTTAGCTAGGAGTACGTTTATTCTGCTCTTGCACACAAAAAAAACTATATTGCACAAGT
CCTAATCATACAACTCTTGTTCCAAAACATTCTTTTTGGAATTGTTAGTGACAATTAATTTCTGTTCTATGAACTAGAAA
TGGTAACAACACGGACTCATCGTGGCCTAATATTTTCTGCTCTCTGTTTTCTCAGTGTTCAACTACGCCAGCCAGGCCCA
CACAGTGACCGAAGTCACCAAGAGCGAGTACGACGCCTGCTCCAGCAACACCAACGGTGACAACAGCGGCGCCACCACCA
TGACCCTCAAAGCCGGCGCGAACTACTACATCTGCACCATCGGCACCCACTGCGCCGCCGGCATGAAGCTCGCCGTCACA
GCCGGCGACTCCAGCC------CCGGTACCCCCGCGGCCGGGACGCCGCCTACCAACCCGTCCGGGTCCGGCGGCTAC--
----CGCATGGAGGTCGGCCCCATTCTCGCGGCCACCGCTGGCGTCCTCCTCAAGCTCGCCGTCTTCTGATCCGCCGATG
ATTCGATGTTGGAAAGTTTCGCCGATCGTTGTACGTTTTCTTCTGACGGCCACGC----GCTAGTTTGTACC-GGAGAGT
GGTTGCCCGTGCTTCCTGATGTGATATGATTGGTTGGTTTCGTAGTGGTTAGCGTGAGTGACTTGTATGGATCATTATCT
CCGATGTTTCTGTCTA--------------GTATAAGTAATAGGAACCCCTCCATATGACGGTGGTTAAATAAGTTTGGA
TTCTGTCAATGCTGAATTTTAATTGTTCTTACATTTGAGGAAAAAACGTAGATTTT-TTTTCCGAAAAAGAGGATAAGCC
TCGCCTCTGC-----ATCGAATGATCCACGAAACTATATATTATTAGAAAAATAAAATCCAACAGCCGAACAAATTCAAC
CAGAAAAAGAAAATACCTGAGACCACGTGCCTCGCGATAGTAGCTCCACCAATTAACCATTGAATGCACCTGCAAAAAAA
AATTAACCATTGAGTGAAAAATACACAGCTT-------------------------------------------------
----------------------------------TTATGCTAAGCCTTCAAGAAGGAAACACCGCACGTGCGTCAATGAT
GACGAGTCCAACCATAGATCAGTCTTGGGATTTTCACCC-CAAAGCCGAGTTTCGATCCACCACCTTCACCAAAGACACG
--C-ATGCGCGCTTCGACATAGCTTGATCCGAGATCCTGTGTTTCTATCGGATTGTGCAAACTCGTCGTTGAAGGCGCTT
CTACCATCATCTCTTGA----CTACCGACGCCTCGTCTATACACACGAACGCTTATTCCTATGAGCACCTTCAAAAGACC
AAACCGATTAATTTC-AAAATAACACTCATGCCAAGTTTAGGACTTAAACCCATGTGAGTTGATTCTATCACAAGAAATA
TAATTATCTGATCAACATTCAGTGTGCAATTGTTCTTGCTTTTTCTTCTTATTATACCTAGTTCTGGTCATGAGAGTGAG
ATTGATGCATGTGGGCGGTTAGGCAGGCTATGGTC-------GTAAGACTATGACTAGACTGAAGGAACTAAAG
>chr6A_1
TTGCATTAGAGAATCCTCACGACCGATATGTTTGCCATCTGTGGCTGGCCACATGACCTGAGATGCCAACTTTGTCTCCA
GGCTCCAAACAACGACCCATCTCTGCAAGAATTGTCCCTTCTCAGTCGTTGTCTAGAACCATGTGTCCACCTGGGCACAC
GACGACTTGCCAGTCTCTGGTTTCCTATCGGTCCCTCTTAATGTCTCCTGG---TGGGATGAGTTGATCACAAT-GGAGG
CGAAGCAAGGCCGCAGGCATCACAACGGTGGGCTGATCTATTCTTTGTGGATTTTTGAAGGATTGG---ATAGGCACATT
TTTTAAGGGTTACCGCATGACGAACTATGAAGTGGCGATGCTAACCATCGATGATATCAAGCAAAAAGAGAGGGCGTTTG
GCGTAGTCGTGCCTCATGGTGGATATTGACTGAGCCTGTGTTTGTCTAGCTAGGGTTGGCCACGATCCCTTCAGAACGTG
TGCAACTCTGTACACATTATTTTTTCACCTCTTCCTTTTGTATGAAAATGCAATGCTCCTGCCAGTTCCTCACGAAAAGA
AAAGCGGAGCGAAAA---CCTTTTTTGGTAAAGTGAAACAAAATGCGTTAATGTATT-TTATTTATTTTATTATT-----
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>chr6A_760
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-----------------------------------------------GTAGAAAATGGATCGAAAAGTAACACAAACGCT
GACCAACTTAGTCGGCCGGGTGGCCTCTTGATCCCGTGACAAGCACGTGACCCATATGGCTCTATAAAACGACCGTCCAA
GCTTCCCCGTCAATCGCGCAATCCAGTTAGTAGCGAGAGACATCGATCGATAGCCACGCTTAGCTCCTTCATCTACTCCA
TAC------------------AGCTAACTCCGAGCCTTCACTTCGACCATGGCCTCGTCCTCCGCGCTGATCGCGCTCCT
TGTTGTCCTTGGCTGCGCTGCGGCGGCCTCCGCGGCCACGTTCACCGTCGGAGATGGGCAAGGGTGGACGACCGGCGCCA
ACTACGCCACCTGGGCCAGCGGCAAGACCTTCGCGGTCGGAGACAAGCTCGGTGAGTCG----TCAGCACTCCTATTTCT
ACACAATGATTTTAGATGATAGAGCAGCTAGCTGATGATGGCTAGGTGG-------------------------------
-----TTGACTCTCAGTTTGTTC---------------------------------------------------------
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--------------ACGGATCGTGGCCTAATATTTTCTGCTCTCTGTTTTCTCAGTGTTCAACTACGCGAGCCAGGCCCA
CACAGTGACCGAAGTCACCAAGAGCGAGTACGACGCCTGCTCCAGCAACGCCAACGGTGACAACAGCGGCGCCACCACCA
TGACCCTCAAAGCCGGCGCGAACTACTACATCTGCACCATCGGCACCCACTGCGCCGCCGGCATGAAGCTAGCCGTCACC
GCCGGCGACTCCAGCC------CCGGTACCCCCGCGGCGGGGACGCCGCCCACCACCCCGTCCGGGTCCGGCGGCTCCCG
CGTGCGCATGGAGGCCGGCCCCGTCCTCGCGGCCACCGCCGGCGTCCTCCTCAAGCTCGCCCTCTTCTGATCCTCCGATG
ATTCGATGTTGGAAAGTTTCGTCGATCGTTCTACGTTTTCTTCTGACGGCCACGCACACGCTAGTTTGGAAC-G-AGAGT
GGTTGCCTGTGCTTCTTGATGTGATATGATTGGTTGGTTTCGTAGTAGTTGGCGCGAGTGACTTGTATGGATCATTATCT
-CGATGTTTCTATCTA--------------GTAGTAATAGG----ACTCCTCCATACGAGGGTGATCAAATAAGTTTGGA
TTCTGTCAATGCTGAGGTTTAATTGTTCTTACTTTCGAGAAAAATGCAGAT-TTTTCTTCTTCATAAAGGTGGATAACCC
CGGGCTTTGCATCGAATCGAATGATGCATACAACCATGTATTATTAAAAAAA----ATCCAGCAACCAAACAA-------
-------------------------------TCACGACAGTAGCTCCACCAATTAACCACTGACTG--ATAAAAAACAGA
AGCAAACA--------AAAA-TACACAGCTACTCCCTCTGTAAACTAATATAAGAGCGTTTAGATCACTAAAATAGTAAT
CTAAACGCTTTTATATTACTTTACGAAGGAAGTACTAGGCTAAGCCTTCAATAAGAAAATGT------TGCGTCGATGGT
GACAAGTGCAA-CATAGGTCGGTCTTGTGATTTCTATCCTCAAAGTCGAGCTTCGATCCACCACCTTCAATAAGGACACA
ACATATGCATGCGTCGACATAGCCTGATCAAAGATATTGTGTCTTCATCACATTGTGCAAACTCATCGTTGAAGCTGTCT
CTACTTTCATCCCTTGATCGGCTACCGACGCCTCATCTATACGCACGCACGCTTATTTCTATGAGCACCTTCAAAAGACC
GAGCCGATTAATTTTAAAAAGAACACTCATGGCAAGTATATGACTTAAACCCAT-TGAGTTGATTCTACCGCAAGAAACC
TAATCGTCTGAGCAACGCTCAATGTGCAATTGTTCTTGCATTTCCTTCTTAT---ACCTAGTTTTGGTCATGG--GAGAG
AGTGATGCATGTGGGCGGTTAGGCAGGCTATGGACTATGGTAGTAAGACTGTGACTAGACTGGAGGAACTAAAG
>chr6D_763
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--------------------------------------------------GAAAATAGTAAGAAAAGTAGCACAAACGCT
GACCAACGTAGTCGGCCGGGTGGCCTCTTGATCCCGTGACAAGCACGTGACCCGTATGGCTCTAT-AAACGACCCTCCAA
CCTTCCCTGTCAATCGCGCAA-CCAGTTACTAGCGAGAGATATTCATCGATAGATA-----AGCTCCTTGGTCTACTCCA
TACGTTCCATTCCCTCCCTCGAGCTAGGTCCGAGCCTTCACTTCGACCATGGCCTCGTCCTCCGCGCTGATAGCGCTCCT
TGTGGTCCTTGGCTGCGCTGCGGCGGCCTCCGCGGCCACGTTCACCGTCGGAGATGGGCAAGGCTGGACGACCGGCGCCA
ATTACGCCACCTGGGCCAGTGGCAAGACCTTCGCGGTTGGAGACAAGCTCGGTGAGTCC----TCAGCACTCGTATTTCT
ACACAATGATTTTAGATGATAGAGCAGCTAGCTGATGATGGCTAGGTGG-------------------------------
-----TGCACCCTCAGTAACTAC---------------------------------------------------------
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--------------ACTGATCGTGGCCTAATATTTTCGTCTCTCTGTTTTCTCAGTGTTCAACTACGCCAGCCAGGCCCA
CACAGTGACCGAAGTCACCAAGAGCGAGTACGACGCCTGCTCCAGCAACGCCAACGGTGACAACAGCGGCGCCACCACCA
TGACCCTCAAAGCCGGCGCGAACTACTACATCTGCACCATCGGCACCCACTGCGCCGCCGGCATGAAGCTCGCCGTCACC
GCCGGCGACTCCAGTTCCGGTTCCGGTACCCCCGCGGCGGGGACGCCACCTACCACCCCGTCCGGGTCCGGCGGCCAC--
----CGCATGGAGGTCGGCCCCGTTCTCGCGGCCACCGCTGGCGTCCTCCTCAAGCTCGCCCTCTTCTGATCCGCCGATG
ATTCGATGTTGGAAAGTTTCGTCGATCGTTCTATGTTTGATTCTGACGGCCACGCACACGCTAGTTTGTACCGG-ACAGT
GGTTGCCTGTGCTTCCTGATGTGATATGATTGGTTGGTTTCGTAGTAGTTGGCGTGAGTGACTTGTATGGATTATTATCT
-CGATGTATCTATCTAGTACAGTAGTACTCGTAGTAATAGG----GCTCCTCCATATGAGTGTGGTTAAATAAGTTTGGA
TTCTGTCAATGCTGAGGTTTAATCGTTCTCACTTTCAAGAAAAATGCAGAT-TTTT-TTCTTTGCAAATGAGGATAACCC
TAGATTCGGCATCAAATCGAATGATGCACACAACCATATATTATTAAAAT------ATCCAGCAACCGAACAA-------
-------------------------------TCGCGATGATAGCTCCACCAATTAACCATTGACTCTAATAAAAGACAGA
AACAAACA--------AAAAATACACAGCTC-------------------------------------------------
----------------------------------CTAGACTAAGCCTTCAAGAAAAAATG-CCGCACGTGCGTCGATGAT
GA--------------------------------------------CGAGTTTCGATCCACCATCTTTAACAAGGACACA
ACC-ATGCATGTGTCGGCATAGCC--------------------------GATTGTGCAAACTCATCGTTGAAGCCGTCT
CTACCTTCATCCCTTGACCGGCGACCGACGCCTCATTTATACACACGCACGCTTATTTCTATGAGCACCTTTAAAAGACC
AGGCCGATTAATTTTAAAAAGAACACTCATGTCAAGTATATGACTTAAACCCAT-TGAGTTGATTCTACCACAAGAAACC
TAATCGTCTGAGCAACGCTCAATGTGCAATTGTTCTTGCATTTCCTTCTTAT---ACCTAGTTTTGGTCATGG--GTGAG
AGTGATGCATGTGGGCGGTTAGGCAGGCTATGGTC-------GTAAGACTGTGACTAGATTGACGGAACTAAAG
>SNPs
------S--------------SS---------S--S--S-------------------SS--------S-----------
----------SS----------S------S----S-------------S--S--------------------S-S-----
S---------S-------------------------SS------------SSSS---------------S---SS-----
-------S-------S--S---S-SS------S--------S-S-----S-SSS--SSSSSSSS-SSSS------S----
---SS-----------------S-------S------------S------------------------------------
----------------------S-----S------------------S-S-------------------S---S------
SS-----S------S---SS---S--------------------------------------SS-------SS-----SS
---SSSS--S-----SSS-------S-----S-----------S--S-S--------S--S--------------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S-----------S--
-----------------S--------------------------------------------------------S-----
--------------------------------------------------------S-----------------------
S-----SS--------S--S-----------------------------------SSS-----S-S--------------
---------S--S-----------------S-----S-----------------S-------------------------
----------------------------------S------------------------SSSS---S----S---S--SS
----SS-S-----S----S----S--S--S-SSSS-SS-SSS-SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS---S--------------------------------------------------------------
-------------------------------------------------S------------------------------
-------------------------------------------------------------------------------S
--------------------------------------S----------------S------------------------
----------------------S--------------------------------------S------------------
---------------------S--------S-------------------------------------------S-----
-------S--------------------------------------S---S-----------------------------
S----------S---------------------SS-S--SSSSSS--S-----------S--------------------
---------------SS---------------S--S---S----SS-SS-SS-------S-S--S---S--------S--
-S-S---------------------S---SS---S-----------S-----SSSS-----S--S--------SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------S--S-SSSSS---S-S-
--SS---SSSSSSSSS--------------S-------------------------------------------------
----------------------------------S--S-----------------S---SS-------------S-----
---S---S---S-----S--S------S-----SS-S--------S-----------------------S---S-----S
--------SS--S----------S-----SS----SS-----S-SS---S--------------S---------S--SS-
-----S-----S----------------------S------------S---------S----------------------
--S-----------S-----S----------S-----S--S-------------S-------------S---------SS
----SS-----S----SS---S-----------------S---S--------SSS--------S--------SSS-----
-S------------------------------------------------S-----------------------
>forward_559
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-----------------------------------------------------------TGCTGGTTCCTCGGGAAAAA-
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>reverse_2350
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-----------------------------CCTCGCGATAGTAGCTCCAC-------------------------------
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