Multiple sequence alignment - TraesCS6B01G323000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G323000 chr6B 100.000 2174 0 0 1 2174 572093058 572090885 0.000000e+00 4015.0
1 TraesCS6B01G323000 chr6D 88.050 1615 116 45 614 2173 382552485 382550893 0.000000e+00 1842.0
2 TraesCS6B01G323000 chr6D 83.898 236 20 11 338 561 382552727 382552498 2.190000e-50 209.0
3 TraesCS6B01G323000 chr6A 85.997 707 73 22 1474 2159 524332704 524332003 0.000000e+00 734.0
4 TraesCS6B01G323000 chr6A 90.608 543 32 10 905 1435 524333232 524332697 0.000000e+00 702.0
5 TraesCS6B01G323000 chr6A 82.516 469 35 23 347 775 524333775 524333314 3.410000e-98 368.0
6 TraesCS6B01G323000 chr5A 87.146 459 41 12 783 1230 8058912 8059363 2.490000e-139 505.0
7 TraesCS6B01G323000 chr2B 98.246 285 5 0 1 285 237040272 237039988 1.160000e-137 499.0
8 TraesCS6B01G323000 chr2B 96.842 285 9 0 1 285 470486067 470486351 5.430000e-131 477.0
9 TraesCS6B01G323000 chr5D 83.247 579 52 26 784 1326 10038026 10038595 6.970000e-135 490.0
10 TraesCS6B01G323000 chr5D 96.491 285 8 2 1 285 245720251 245720533 9.090000e-129 470.0
11 TraesCS6B01G323000 chr5D 89.506 162 10 5 584 738 10037796 10037957 4.730000e-47 198.0
12 TraesCS6B01G323000 chr5D 91.139 79 4 2 515 593 10037464 10037539 1.060000e-18 104.0
13 TraesCS6B01G323000 chr5D 90.141 71 5 2 379 448 10037405 10037474 8.260000e-15 91.6
14 TraesCS6B01G323000 chr4A 95.470 287 10 3 1 285 743662553 743662268 2.540000e-124 455.0
15 TraesCS6B01G323000 chr4A 95.105 286 11 3 1 285 608052277 608051994 4.260000e-122 448.0
16 TraesCS6B01G323000 chr4A 96.970 33 1 0 2029 2061 485708788 485708820 3.010000e-04 56.5
17 TraesCS6B01G323000 chr1B 95.439 285 10 2 1 285 603659524 603659805 3.290000e-123 451.0
18 TraesCS6B01G323000 chr3B 95.122 287 11 3 1 285 252956426 252956141 1.180000e-122 449.0
19 TraesCS6B01G323000 chr4B 94.845 291 8 6 1 285 3844878 3844589 4.260000e-122 448.0
20 TraesCS6B01G323000 chr4B 96.970 33 1 0 2029 2061 134047225 134047193 3.010000e-04 56.5
21 TraesCS6B01G323000 chr1D 95.088 285 12 2 1 285 297541633 297541351 4.260000e-122 448.0
22 TraesCS6B01G323000 chr5B 80.379 581 60 29 791 1326 42158409 42157838 2.020000e-105 392.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G323000 chr6B 572090885 572093058 2173 True 4015.000000 4015 100.000000 1 2174 1 chr6B.!!$R1 2173
1 TraesCS6B01G323000 chr6D 382550893 382552727 1834 True 1025.500000 1842 85.974000 338 2173 2 chr6D.!!$R1 1835
2 TraesCS6B01G323000 chr6A 524332003 524333775 1772 True 601.333333 734 86.373667 347 2159 3 chr6A.!!$R1 1812
3 TraesCS6B01G323000 chr5D 10037405 10038595 1190 False 220.900000 490 88.508250 379 1326 4 chr5D.!!$F2 947
4 TraesCS6B01G323000 chr5B 42157838 42158409 571 True 392.000000 392 80.379000 791 1326 1 chr5B.!!$R1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
343 344 0.112995 TGATTTGGCAGGCTTGGAGT 59.887 50.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1510 1930 0.178068 TGGATGGACTAGCGCTTTCC 59.822 55.0 24.3 24.3 0.0 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.109799 CACCCGGCCTCTGCATAG 59.890 66.667 0.00 0.00 40.13 2.23
18 19 2.041922 ACCCGGCCTCTGCATAGA 60.042 61.111 0.00 0.00 40.13 1.98
19 20 1.460305 ACCCGGCCTCTGCATAGAT 60.460 57.895 0.00 0.00 40.13 1.98
20 21 0.178932 ACCCGGCCTCTGCATAGATA 60.179 55.000 0.00 0.00 40.13 1.98
21 22 0.976641 CCCGGCCTCTGCATAGATAA 59.023 55.000 0.00 0.00 40.13 1.75
22 23 1.066573 CCCGGCCTCTGCATAGATAAG 60.067 57.143 0.00 0.00 40.13 1.73
23 24 1.895798 CCGGCCTCTGCATAGATAAGA 59.104 52.381 0.00 0.00 40.13 2.10
24 25 2.499289 CCGGCCTCTGCATAGATAAGAT 59.501 50.000 0.00 0.00 40.13 2.40
25 26 3.519579 CGGCCTCTGCATAGATAAGATG 58.480 50.000 0.00 0.00 40.13 2.90
26 27 3.056250 CGGCCTCTGCATAGATAAGATGT 60.056 47.826 0.00 0.00 40.13 3.06
27 28 4.158579 CGGCCTCTGCATAGATAAGATGTA 59.841 45.833 0.00 0.00 40.13 2.29
28 29 5.415221 GGCCTCTGCATAGATAAGATGTAC 58.585 45.833 0.00 0.00 40.13 2.90
29 30 5.047021 GGCCTCTGCATAGATAAGATGTACA 60.047 44.000 0.00 0.00 40.13 2.90
30 31 5.866633 GCCTCTGCATAGATAAGATGTACAC 59.133 44.000 0.00 0.00 37.47 2.90
31 32 6.517362 GCCTCTGCATAGATAAGATGTACACA 60.517 42.308 0.00 0.00 37.47 3.72
32 33 7.089538 CCTCTGCATAGATAAGATGTACACAG 58.910 42.308 0.00 0.00 31.21 3.66
33 34 6.450545 TCTGCATAGATAAGATGTACACAGC 58.549 40.000 0.00 0.00 0.00 4.40
34 35 5.541845 TGCATAGATAAGATGTACACAGCC 58.458 41.667 0.00 0.00 31.57 4.85
35 36 5.070313 TGCATAGATAAGATGTACACAGCCA 59.930 40.000 0.00 0.00 31.57 4.75
36 37 5.991606 GCATAGATAAGATGTACACAGCCAA 59.008 40.000 0.00 0.00 31.57 4.52
37 38 6.483307 GCATAGATAAGATGTACACAGCCAAA 59.517 38.462 0.00 0.00 31.57 3.28
38 39 7.519008 GCATAGATAAGATGTACACAGCCAAAC 60.519 40.741 0.00 0.00 31.57 2.93
39 40 5.804639 AGATAAGATGTACACAGCCAAACA 58.195 37.500 0.00 0.00 31.57 2.83
40 41 6.237901 AGATAAGATGTACACAGCCAAACAA 58.762 36.000 0.00 0.00 31.57 2.83
41 42 6.886459 AGATAAGATGTACACAGCCAAACAAT 59.114 34.615 0.00 0.00 31.57 2.71
42 43 8.046708 AGATAAGATGTACACAGCCAAACAATA 58.953 33.333 0.00 0.00 31.57 1.90
43 44 8.752005 ATAAGATGTACACAGCCAAACAATAT 57.248 30.769 0.00 0.00 31.57 1.28
44 45 6.683974 AGATGTACACAGCCAAACAATATC 57.316 37.500 0.00 0.00 31.57 1.63
45 46 5.590259 AGATGTACACAGCCAAACAATATCC 59.410 40.000 0.00 0.00 31.57 2.59
46 47 4.917385 TGTACACAGCCAAACAATATCCT 58.083 39.130 0.00 0.00 0.00 3.24
47 48 4.941263 TGTACACAGCCAAACAATATCCTC 59.059 41.667 0.00 0.00 0.00 3.71
48 49 4.307032 ACACAGCCAAACAATATCCTCT 57.693 40.909 0.00 0.00 0.00 3.69
49 50 4.265073 ACACAGCCAAACAATATCCTCTC 58.735 43.478 0.00 0.00 0.00 3.20
50 51 4.263462 ACACAGCCAAACAATATCCTCTCA 60.263 41.667 0.00 0.00 0.00 3.27
51 52 4.334759 CACAGCCAAACAATATCCTCTCAG 59.665 45.833 0.00 0.00 0.00 3.35
52 53 4.018960 ACAGCCAAACAATATCCTCTCAGT 60.019 41.667 0.00 0.00 0.00 3.41
53 54 4.946157 CAGCCAAACAATATCCTCTCAGTT 59.054 41.667 0.00 0.00 0.00 3.16
54 55 5.065731 CAGCCAAACAATATCCTCTCAGTTC 59.934 44.000 0.00 0.00 0.00 3.01
55 56 4.943705 GCCAAACAATATCCTCTCAGTTCA 59.056 41.667 0.00 0.00 0.00 3.18
56 57 5.415701 GCCAAACAATATCCTCTCAGTTCAA 59.584 40.000 0.00 0.00 0.00 2.69
57 58 6.071952 GCCAAACAATATCCTCTCAGTTCAAA 60.072 38.462 0.00 0.00 0.00 2.69
58 59 7.523709 GCCAAACAATATCCTCTCAGTTCAAAA 60.524 37.037 0.00 0.00 0.00 2.44
59 60 8.025445 CCAAACAATATCCTCTCAGTTCAAAAG 58.975 37.037 0.00 0.00 0.00 2.27
60 61 8.786898 CAAACAATATCCTCTCAGTTCAAAAGA 58.213 33.333 0.00 0.00 0.00 2.52
61 62 8.924511 AACAATATCCTCTCAGTTCAAAAGAA 57.075 30.769 0.00 0.00 0.00 2.52
62 63 8.924511 ACAATATCCTCTCAGTTCAAAAGAAA 57.075 30.769 0.00 0.00 0.00 2.52
63 64 9.354673 ACAATATCCTCTCAGTTCAAAAGAAAA 57.645 29.630 0.00 0.00 0.00 2.29
93 94 6.838198 AAAAAGGCGAAATACAAGGAAAAC 57.162 33.333 0.00 0.00 0.00 2.43
94 95 5.523438 AAAGGCGAAATACAAGGAAAACA 57.477 34.783 0.00 0.00 0.00 2.83
95 96 5.722021 AAGGCGAAATACAAGGAAAACAT 57.278 34.783 0.00 0.00 0.00 2.71
96 97 5.059404 AGGCGAAATACAAGGAAAACATG 57.941 39.130 0.00 0.00 0.00 3.21
97 98 4.522789 AGGCGAAATACAAGGAAAACATGT 59.477 37.500 0.00 0.00 34.92 3.21
98 99 5.708230 AGGCGAAATACAAGGAAAACATGTA 59.292 36.000 0.00 0.00 37.62 2.29
99 100 6.027749 GGCGAAATACAAGGAAAACATGTAG 58.972 40.000 0.00 0.00 36.78 2.74
100 101 6.349033 GGCGAAATACAAGGAAAACATGTAGT 60.349 38.462 0.00 0.00 36.78 2.73
101 102 7.148373 GGCGAAATACAAGGAAAACATGTAGTA 60.148 37.037 0.00 0.00 36.78 1.82
102 103 8.395633 GCGAAATACAAGGAAAACATGTAGTAT 58.604 33.333 0.00 0.00 36.78 2.12
103 104 9.916397 CGAAATACAAGGAAAACATGTAGTATC 57.084 33.333 0.00 0.00 36.78 2.24
105 106 8.433421 AATACAAGGAAAACATGTAGTATCCG 57.567 34.615 0.00 0.00 39.88 4.18
106 107 5.801380 ACAAGGAAAACATGTAGTATCCGT 58.199 37.500 0.00 0.34 39.88 4.69
107 108 6.938507 ACAAGGAAAACATGTAGTATCCGTA 58.061 36.000 0.00 0.00 39.88 4.02
108 109 7.562135 ACAAGGAAAACATGTAGTATCCGTAT 58.438 34.615 0.00 0.00 39.88 3.06
109 110 8.698210 ACAAGGAAAACATGTAGTATCCGTATA 58.302 33.333 0.00 0.00 39.88 1.47
110 111 9.537192 CAAGGAAAACATGTAGTATCCGTATAA 57.463 33.333 0.00 0.00 39.88 0.98
111 112 9.538508 AAGGAAAACATGTAGTATCCGTATAAC 57.461 33.333 0.00 0.00 39.88 1.89
112 113 7.864379 AGGAAAACATGTAGTATCCGTATAACG 59.136 37.037 0.00 0.00 39.88 3.18
113 114 6.998258 AAACATGTAGTATCCGTATAACGC 57.002 37.500 0.00 0.00 40.91 4.84
114 115 5.051891 ACATGTAGTATCCGTATAACGCC 57.948 43.478 0.00 0.00 40.91 5.68
115 116 4.763793 ACATGTAGTATCCGTATAACGCCT 59.236 41.667 0.00 0.00 40.91 5.52
116 117 5.939883 ACATGTAGTATCCGTATAACGCCTA 59.060 40.000 0.00 0.00 40.91 3.93
117 118 6.430925 ACATGTAGTATCCGTATAACGCCTAA 59.569 38.462 0.00 0.00 40.91 2.69
118 119 6.875948 TGTAGTATCCGTATAACGCCTAAA 57.124 37.500 0.00 0.00 40.91 1.85
119 120 6.902341 TGTAGTATCCGTATAACGCCTAAAG 58.098 40.000 0.00 0.00 40.91 1.85
120 121 4.802999 AGTATCCGTATAACGCCTAAAGC 58.197 43.478 0.00 0.00 40.91 3.51
129 130 2.124695 GCCTAAAGCGGAGGTGGG 60.125 66.667 3.90 0.00 39.47 4.61
130 131 2.124695 CCTAAAGCGGAGGTGGGC 60.125 66.667 0.00 0.00 39.47 5.36
131 132 2.124695 CTAAAGCGGAGGTGGGCC 60.125 66.667 0.00 0.00 39.47 5.80
132 133 2.931105 TAAAGCGGAGGTGGGCCA 60.931 61.111 0.00 0.00 39.47 5.36
133 134 2.478335 CTAAAGCGGAGGTGGGCCAA 62.478 60.000 8.40 0.00 39.47 4.52
134 135 1.858739 TAAAGCGGAGGTGGGCCAAT 61.859 55.000 8.40 0.00 39.47 3.16
135 136 3.645268 AAGCGGAGGTGGGCCAATC 62.645 63.158 8.40 9.91 39.47 2.67
137 138 3.411517 CGGAGGTGGGCCAATCCT 61.412 66.667 27.59 22.49 37.19 3.24
138 139 2.070039 CGGAGGTGGGCCAATCCTA 61.070 63.158 27.59 0.00 37.19 2.94
139 140 1.632018 CGGAGGTGGGCCAATCCTAA 61.632 60.000 27.59 0.00 37.19 2.69
140 141 0.183731 GGAGGTGGGCCAATCCTAAG 59.816 60.000 24.99 0.00 37.19 2.18
141 142 1.213296 GAGGTGGGCCAATCCTAAGA 58.787 55.000 15.23 0.00 37.19 2.10
142 143 1.777272 GAGGTGGGCCAATCCTAAGAT 59.223 52.381 15.23 0.00 37.19 2.40
143 144 1.777272 AGGTGGGCCAATCCTAAGATC 59.223 52.381 13.77 0.00 37.19 2.75
144 145 1.494721 GGTGGGCCAATCCTAAGATCA 59.505 52.381 8.40 0.00 34.39 2.92
145 146 2.108952 GGTGGGCCAATCCTAAGATCAT 59.891 50.000 8.40 0.00 34.39 2.45
146 147 3.152341 GTGGGCCAATCCTAAGATCATG 58.848 50.000 8.40 0.00 34.39 3.07
147 148 2.165998 GGGCCAATCCTAAGATCATGC 58.834 52.381 4.39 0.00 34.39 4.06
148 149 2.224967 GGGCCAATCCTAAGATCATGCT 60.225 50.000 4.39 0.00 34.39 3.79
149 150 2.818432 GGCCAATCCTAAGATCATGCTG 59.182 50.000 0.00 0.00 0.00 4.41
150 151 2.228343 GCCAATCCTAAGATCATGCTGC 59.772 50.000 0.00 0.00 0.00 5.25
151 152 2.818432 CCAATCCTAAGATCATGCTGCC 59.182 50.000 0.00 0.00 0.00 4.85
152 153 3.483421 CAATCCTAAGATCATGCTGCCA 58.517 45.455 0.00 0.00 0.00 4.92
153 154 2.627515 TCCTAAGATCATGCTGCCAC 57.372 50.000 0.00 0.00 0.00 5.01
154 155 1.141657 TCCTAAGATCATGCTGCCACC 59.858 52.381 0.00 0.00 0.00 4.61
155 156 1.602311 CTAAGATCATGCTGCCACCC 58.398 55.000 0.00 0.00 0.00 4.61
156 157 0.918258 TAAGATCATGCTGCCACCCA 59.082 50.000 0.00 0.00 0.00 4.51
157 158 0.260816 AAGATCATGCTGCCACCCAT 59.739 50.000 0.00 0.00 0.00 4.00
158 159 0.467474 AGATCATGCTGCCACCCATG 60.467 55.000 0.00 0.00 40.05 3.66
159 160 0.754217 GATCATGCTGCCACCCATGT 60.754 55.000 0.00 0.00 39.74 3.21
160 161 0.324923 ATCATGCTGCCACCCATGTT 60.325 50.000 0.00 0.00 39.74 2.71
161 162 1.216977 CATGCTGCCACCCATGTTG 59.783 57.895 0.00 0.00 35.33 3.33
162 163 1.985662 ATGCTGCCACCCATGTTGG 60.986 57.895 6.28 6.28 37.25 3.77
176 177 4.867086 CCATGTTGGGTAAAAGTATCCCT 58.133 43.478 0.00 0.00 41.58 4.20
177 178 4.887655 CCATGTTGGGTAAAAGTATCCCTC 59.112 45.833 0.00 0.00 41.58 4.30
178 179 4.210724 TGTTGGGTAAAAGTATCCCTCG 57.789 45.455 0.00 0.00 41.58 4.63
179 180 2.941064 GTTGGGTAAAAGTATCCCTCGC 59.059 50.000 0.00 0.00 41.58 5.03
180 181 1.487558 TGGGTAAAAGTATCCCTCGCC 59.512 52.381 0.00 0.00 41.58 5.54
181 182 1.539712 GGGTAAAAGTATCCCTCGCCG 60.540 57.143 0.00 0.00 38.29 6.46
182 183 1.137675 GGTAAAAGTATCCCTCGCCGT 59.862 52.381 0.00 0.00 0.00 5.68
183 184 2.362077 GGTAAAAGTATCCCTCGCCGTA 59.638 50.000 0.00 0.00 0.00 4.02
184 185 2.884894 AAAAGTATCCCTCGCCGTAG 57.115 50.000 0.00 0.00 0.00 3.51
185 186 0.388294 AAAGTATCCCTCGCCGTAGC 59.612 55.000 0.00 0.00 0.00 3.58
186 187 1.461911 AAGTATCCCTCGCCGTAGCC 61.462 60.000 0.00 0.00 34.57 3.93
187 188 1.902432 GTATCCCTCGCCGTAGCCT 60.902 63.158 0.00 0.00 34.57 4.58
188 189 1.602888 TATCCCTCGCCGTAGCCTC 60.603 63.158 0.00 0.00 34.57 4.70
191 192 3.458163 CCTCGCCGTAGCCTCCAA 61.458 66.667 0.00 0.00 34.57 3.53
192 193 2.797278 CCTCGCCGTAGCCTCCAAT 61.797 63.158 0.00 0.00 34.57 3.16
193 194 1.300233 CTCGCCGTAGCCTCCAATC 60.300 63.158 0.00 0.00 34.57 2.67
194 195 2.658593 CGCCGTAGCCTCCAATCG 60.659 66.667 0.00 0.00 34.57 3.34
195 196 2.499685 GCCGTAGCCTCCAATCGT 59.500 61.111 0.00 0.00 0.00 3.73
196 197 1.883084 GCCGTAGCCTCCAATCGTG 60.883 63.158 0.00 0.00 0.00 4.35
197 198 1.515954 CCGTAGCCTCCAATCGTGT 59.484 57.895 0.00 0.00 0.00 4.49
198 199 0.742505 CCGTAGCCTCCAATCGTGTA 59.257 55.000 0.00 0.00 0.00 2.90
199 200 1.535437 CCGTAGCCTCCAATCGTGTAC 60.535 57.143 0.00 0.00 0.00 2.90
200 201 1.133598 CGTAGCCTCCAATCGTGTACA 59.866 52.381 0.00 0.00 0.00 2.90
201 202 2.537401 GTAGCCTCCAATCGTGTACAC 58.463 52.381 16.32 16.32 0.00 2.90
202 203 0.973632 AGCCTCCAATCGTGTACACA 59.026 50.000 24.98 12.85 0.00 3.72
203 204 1.076332 GCCTCCAATCGTGTACACAC 58.924 55.000 24.98 2.41 43.15 3.82
204 205 1.722011 CCTCCAATCGTGTACACACC 58.278 55.000 24.98 0.00 43.66 4.16
205 206 1.275291 CCTCCAATCGTGTACACACCT 59.725 52.381 24.98 6.48 43.66 4.00
206 207 2.607187 CTCCAATCGTGTACACACCTC 58.393 52.381 24.98 0.00 43.66 3.85
207 208 1.274167 TCCAATCGTGTACACACCTCC 59.726 52.381 24.98 0.00 43.66 4.30
208 209 1.001520 CCAATCGTGTACACACCTCCA 59.998 52.381 24.98 2.43 43.66 3.86
209 210 2.354704 CCAATCGTGTACACACCTCCAT 60.355 50.000 24.98 4.59 43.66 3.41
210 211 3.118920 CCAATCGTGTACACACCTCCATA 60.119 47.826 24.98 1.02 43.66 2.74
211 212 4.500127 CAATCGTGTACACACCTCCATAA 58.500 43.478 24.98 0.07 43.66 1.90
212 213 4.811969 ATCGTGTACACACCTCCATAAA 57.188 40.909 24.98 0.00 43.66 1.40
213 214 3.916761 TCGTGTACACACCTCCATAAAC 58.083 45.455 24.98 0.00 43.66 2.01
214 215 3.321396 TCGTGTACACACCTCCATAAACA 59.679 43.478 24.98 0.00 43.66 2.83
215 216 3.678072 CGTGTACACACCTCCATAAACAG 59.322 47.826 24.98 0.38 43.66 3.16
216 217 4.000988 GTGTACACACCTCCATAAACAGG 58.999 47.826 21.14 0.00 40.85 4.00
217 218 3.649023 TGTACACACCTCCATAAACAGGT 59.351 43.478 0.00 0.00 44.42 4.00
218 219 3.418684 ACACACCTCCATAAACAGGTC 57.581 47.619 0.00 0.00 41.41 3.85
219 220 2.979678 ACACACCTCCATAAACAGGTCT 59.020 45.455 0.00 0.00 41.41 3.85
220 221 3.008049 ACACACCTCCATAAACAGGTCTC 59.992 47.826 0.00 0.00 41.41 3.36
221 222 2.233922 ACACCTCCATAAACAGGTCTCG 59.766 50.000 0.00 0.00 41.41 4.04
222 223 2.496070 CACCTCCATAAACAGGTCTCGA 59.504 50.000 0.00 0.00 41.41 4.04
223 224 3.133003 CACCTCCATAAACAGGTCTCGAT 59.867 47.826 0.00 0.00 41.41 3.59
224 225 3.775316 ACCTCCATAAACAGGTCTCGATT 59.225 43.478 0.00 0.00 38.83 3.34
225 226 4.141914 ACCTCCATAAACAGGTCTCGATTC 60.142 45.833 0.00 0.00 38.83 2.52
226 227 4.100189 CCTCCATAAACAGGTCTCGATTCT 59.900 45.833 0.00 0.00 0.00 2.40
227 228 5.263968 TCCATAAACAGGTCTCGATTCTC 57.736 43.478 0.00 0.00 0.00 2.87
228 229 4.099573 TCCATAAACAGGTCTCGATTCTCC 59.900 45.833 0.00 0.00 0.00 3.71
229 230 4.141937 CCATAAACAGGTCTCGATTCTCCA 60.142 45.833 0.00 0.00 0.00 3.86
230 231 3.320673 AAACAGGTCTCGATTCTCCAC 57.679 47.619 0.00 0.00 0.00 4.02
231 232 1.924731 ACAGGTCTCGATTCTCCACA 58.075 50.000 0.00 0.00 0.00 4.17
232 233 1.546476 ACAGGTCTCGATTCTCCACAC 59.454 52.381 0.00 0.00 0.00 3.82
233 234 0.811915 AGGTCTCGATTCTCCACACG 59.188 55.000 0.00 0.00 0.00 4.49
234 235 0.526662 GGTCTCGATTCTCCACACGT 59.473 55.000 0.00 0.00 0.00 4.49
235 236 1.067776 GGTCTCGATTCTCCACACGTT 60.068 52.381 0.00 0.00 0.00 3.99
236 237 1.986378 GTCTCGATTCTCCACACGTTG 59.014 52.381 0.00 0.00 0.00 4.10
237 238 1.611977 TCTCGATTCTCCACACGTTGT 59.388 47.619 0.00 0.00 0.00 3.32
238 239 2.815503 TCTCGATTCTCCACACGTTGTA 59.184 45.455 0.00 0.00 0.00 2.41
239 240 3.119955 TCTCGATTCTCCACACGTTGTAG 60.120 47.826 0.00 0.00 0.00 2.74
240 241 2.815503 TCGATTCTCCACACGTTGTAGA 59.184 45.455 0.00 0.00 0.00 2.59
241 242 3.119955 TCGATTCTCCACACGTTGTAGAG 60.120 47.826 7.06 7.06 37.44 2.43
242 243 3.119955 CGATTCTCCACACGTTGTAGAGA 60.120 47.826 10.45 10.45 41.96 3.10
243 244 3.917329 TTCTCCACACGTTGTAGAGAG 57.083 47.619 12.85 9.33 43.78 3.20
244 245 2.160205 TCTCCACACGTTGTAGAGAGG 58.840 52.381 10.45 0.00 39.55 3.69
245 246 2.160205 CTCCACACGTTGTAGAGAGGA 58.840 52.381 7.45 0.00 38.17 3.71
246 247 1.884579 TCCACACGTTGTAGAGAGGAC 59.115 52.381 0.00 0.00 0.00 3.85
247 248 1.067776 CCACACGTTGTAGAGAGGACC 60.068 57.143 0.00 0.00 0.00 4.46
248 249 1.611977 CACACGTTGTAGAGAGGACCA 59.388 52.381 0.00 0.00 0.00 4.02
249 250 2.231478 CACACGTTGTAGAGAGGACCAT 59.769 50.000 0.00 0.00 0.00 3.55
250 251 3.442625 CACACGTTGTAGAGAGGACCATA 59.557 47.826 0.00 0.00 0.00 2.74
251 252 4.082408 CACACGTTGTAGAGAGGACCATAA 60.082 45.833 0.00 0.00 0.00 1.90
252 253 4.525487 ACACGTTGTAGAGAGGACCATAAA 59.475 41.667 0.00 0.00 0.00 1.40
253 254 4.863131 CACGTTGTAGAGAGGACCATAAAC 59.137 45.833 0.00 0.00 0.00 2.01
254 255 4.103357 CGTTGTAGAGAGGACCATAAACG 58.897 47.826 0.00 0.00 33.01 3.60
255 256 4.142534 CGTTGTAGAGAGGACCATAAACGA 60.143 45.833 0.00 0.00 40.01 3.85
256 257 5.620654 CGTTGTAGAGAGGACCATAAACGAA 60.621 44.000 0.00 0.00 40.01 3.85
257 258 5.578005 TGTAGAGAGGACCATAAACGAAG 57.422 43.478 0.00 0.00 0.00 3.79
258 259 5.258841 TGTAGAGAGGACCATAAACGAAGA 58.741 41.667 0.00 0.00 0.00 2.87
259 260 4.993029 AGAGAGGACCATAAACGAAGAG 57.007 45.455 0.00 0.00 0.00 2.85
260 261 4.345854 AGAGAGGACCATAAACGAAGAGT 58.654 43.478 0.00 0.00 0.00 3.24
261 262 4.399934 AGAGAGGACCATAAACGAAGAGTC 59.600 45.833 0.00 0.00 0.00 3.36
262 263 3.447944 AGAGGACCATAAACGAAGAGTCC 59.552 47.826 0.00 0.00 43.33 3.85
263 264 3.889520 GGACCATAAACGAAGAGTCCT 57.110 47.619 0.00 0.00 40.51 3.85
264 265 3.522553 GGACCATAAACGAAGAGTCCTG 58.477 50.000 0.00 0.00 40.51 3.86
265 266 3.522553 GACCATAAACGAAGAGTCCTGG 58.477 50.000 0.00 0.00 34.00 4.45
266 267 2.904434 ACCATAAACGAAGAGTCCTGGT 59.096 45.455 0.00 0.00 35.37 4.00
267 268 4.091549 ACCATAAACGAAGAGTCCTGGTA 58.908 43.478 0.00 0.00 37.16 3.25
268 269 4.081807 ACCATAAACGAAGAGTCCTGGTAC 60.082 45.833 0.00 0.00 37.16 3.34
269 270 4.081862 CCATAAACGAAGAGTCCTGGTACA 60.082 45.833 0.00 0.00 0.00 2.90
270 271 5.395324 CCATAAACGAAGAGTCCTGGTACAT 60.395 44.000 0.00 0.00 38.20 2.29
271 272 3.870633 AACGAAGAGTCCTGGTACATC 57.129 47.619 0.00 0.00 38.20 3.06
272 273 3.088789 ACGAAGAGTCCTGGTACATCT 57.911 47.619 0.00 0.00 38.20 2.90
273 274 2.755655 ACGAAGAGTCCTGGTACATCTG 59.244 50.000 0.00 0.00 38.20 2.90
274 275 2.755655 CGAAGAGTCCTGGTACATCTGT 59.244 50.000 0.00 0.00 38.20 3.41
275 276 3.945921 CGAAGAGTCCTGGTACATCTGTA 59.054 47.826 0.00 0.00 38.20 2.74
276 277 4.035792 CGAAGAGTCCTGGTACATCTGTAG 59.964 50.000 0.00 0.00 38.20 2.74
277 278 4.864483 AGAGTCCTGGTACATCTGTAGA 57.136 45.455 0.00 0.00 38.20 2.59
278 279 5.396057 AGAGTCCTGGTACATCTGTAGAT 57.604 43.478 0.00 0.00 38.20 1.98
279 280 6.517013 AGAGTCCTGGTACATCTGTAGATA 57.483 41.667 0.00 0.00 38.20 1.98
280 281 6.912426 AGAGTCCTGGTACATCTGTAGATAA 58.088 40.000 0.00 0.00 38.20 1.75
281 282 6.773685 AGAGTCCTGGTACATCTGTAGATAAC 59.226 42.308 0.00 0.00 38.20 1.89
282 283 5.834204 AGTCCTGGTACATCTGTAGATAACC 59.166 44.000 14.29 14.29 38.90 2.85
283 284 5.834204 GTCCTGGTACATCTGTAGATAACCT 59.166 44.000 18.74 0.00 39.06 3.50
284 285 5.833667 TCCTGGTACATCTGTAGATAACCTG 59.166 44.000 18.74 17.80 39.06 4.00
285 286 5.598830 CCTGGTACATCTGTAGATAACCTGT 59.401 44.000 18.74 8.08 39.06 4.00
286 287 6.776116 CCTGGTACATCTGTAGATAACCTGTA 59.224 42.308 18.74 7.34 39.06 2.74
287 288 7.040340 CCTGGTACATCTGTAGATAACCTGTAG 60.040 44.444 18.74 11.91 39.06 2.74
288 289 7.580007 TGGTACATCTGTAGATAACCTGTAGA 58.420 38.462 18.74 0.00 39.06 2.59
289 290 8.225416 TGGTACATCTGTAGATAACCTGTAGAT 58.775 37.037 18.74 0.00 39.06 1.98
290 291 9.736414 GGTACATCTGTAGATAACCTGTAGATA 57.264 37.037 14.05 0.00 37.07 1.98
306 307 9.978336 ACCTGTAGATAATCTTATACTACCTCC 57.022 37.037 0.00 0.00 34.44 4.30
307 308 9.976776 CCTGTAGATAATCTTATACTACCTCCA 57.023 37.037 0.00 0.00 34.44 3.86
327 328 9.887862 ACCTCCATTCCAAAAATATAAGATGAT 57.112 29.630 0.00 0.00 0.00 2.45
334 335 9.820725 TTCCAAAAATATAAGATGATTTGGCAG 57.179 29.630 9.60 0.00 43.97 4.85
335 336 8.423349 TCCAAAAATATAAGATGATTTGGCAGG 58.577 33.333 9.60 0.00 43.97 4.85
336 337 7.172019 CCAAAAATATAAGATGATTTGGCAGGC 59.828 37.037 2.52 0.00 40.00 4.85
337 338 7.607615 AAAATATAAGATGATTTGGCAGGCT 57.392 32.000 0.00 0.00 0.00 4.58
338 339 7.607615 AAATATAAGATGATTTGGCAGGCTT 57.392 32.000 0.00 0.00 0.00 4.35
339 340 4.931661 ATAAGATGATTTGGCAGGCTTG 57.068 40.909 0.00 0.00 0.00 4.01
340 341 1.481871 AGATGATTTGGCAGGCTTGG 58.518 50.000 0.00 0.00 0.00 3.61
341 342 1.006281 AGATGATTTGGCAGGCTTGGA 59.994 47.619 0.00 0.00 0.00 3.53
342 343 1.407979 GATGATTTGGCAGGCTTGGAG 59.592 52.381 0.00 0.00 0.00 3.86
343 344 0.112995 TGATTTGGCAGGCTTGGAGT 59.887 50.000 0.00 0.00 0.00 3.85
344 345 0.813821 GATTTGGCAGGCTTGGAGTC 59.186 55.000 0.00 0.00 0.00 3.36
345 346 0.962356 ATTTGGCAGGCTTGGAGTCG 60.962 55.000 0.00 0.00 0.00 4.18
386 387 1.347062 GCCAAAAACCAGGGATGGAA 58.653 50.000 0.31 0.00 32.82 3.53
387 388 1.276138 GCCAAAAACCAGGGATGGAAG 59.724 52.381 0.31 0.00 32.82 3.46
388 389 1.901833 CCAAAAACCAGGGATGGAAGG 59.098 52.381 0.31 0.00 32.82 3.46
436 437 1.869132 GGTAACAAGTGGTCGTGGTTC 59.131 52.381 0.00 0.00 0.00 3.62
437 438 2.484241 GGTAACAAGTGGTCGTGGTTCT 60.484 50.000 0.00 0.00 0.00 3.01
438 439 3.243839 GGTAACAAGTGGTCGTGGTTCTA 60.244 47.826 0.00 0.00 0.00 2.10
439 440 2.814280 ACAAGTGGTCGTGGTTCTAG 57.186 50.000 0.00 0.00 0.00 2.43
440 441 1.270147 ACAAGTGGTCGTGGTTCTAGC 60.270 52.381 0.00 0.00 0.00 3.42
441 442 1.045407 AAGTGGTCGTGGTTCTAGCA 58.955 50.000 0.00 0.00 0.00 3.49
453 463 5.428253 GTGGTTCTAGCATGGTATTCTTGA 58.572 41.667 4.84 0.00 0.00 3.02
455 465 6.037610 GTGGTTCTAGCATGGTATTCTTGAAG 59.962 42.308 4.84 0.00 0.00 3.02
461 471 3.624707 GCATGGTATTCTTGAAGGGTGGA 60.625 47.826 0.00 0.00 0.00 4.02
467 477 6.833416 TGGTATTCTTGAAGGGTGGAATATTG 59.167 38.462 0.00 0.00 34.56 1.90
476 487 9.540538 TTGAAGGGTGGAATATTGAAGAATTTA 57.459 29.630 0.00 0.00 0.00 1.40
485 496 9.599866 GGAATATTGAAGAATTTAAAGGGTTGG 57.400 33.333 0.00 0.00 0.00 3.77
487 498 8.909423 ATATTGAAGAATTTAAAGGGTTGGGA 57.091 30.769 0.00 0.00 0.00 4.37
488 499 7.625498 ATTGAAGAATTTAAAGGGTTGGGAA 57.375 32.000 0.00 0.00 0.00 3.97
489 500 6.664428 TGAAGAATTTAAAGGGTTGGGAAG 57.336 37.500 0.00 0.00 0.00 3.46
490 501 6.140377 TGAAGAATTTAAAGGGTTGGGAAGT 58.860 36.000 0.00 0.00 0.00 3.01
500 514 1.975680 GGTTGGGAAGTGTAGGACAGA 59.024 52.381 0.00 0.00 0.00 3.41
505 519 3.011821 TGGGAAGTGTAGGACAGAGAGAT 59.988 47.826 0.00 0.00 0.00 2.75
522 536 7.393796 ACAGAGAGATTTTTCTCATTGCTTGAT 59.606 33.333 5.84 0.00 44.85 2.57
523 537 8.890718 CAGAGAGATTTTTCTCATTGCTTGATA 58.109 33.333 5.84 0.00 44.85 2.15
524 538 8.891720 AGAGAGATTTTTCTCATTGCTTGATAC 58.108 33.333 5.84 0.00 44.85 2.24
554 568 4.717280 ACACAGCTAGGCTTAAATACTCCT 59.283 41.667 0.00 0.00 36.40 3.69
561 575 7.956881 AGCTAGGCTTAAATACTCCTATTAGGT 59.043 37.037 9.57 0.00 33.89 3.08
582 596 0.902048 CTCTGGCTCACTGGACTGGA 60.902 60.000 0.00 0.00 0.00 3.86
611 891 5.563592 ACTCATTCAGTCATTGGTCATTCA 58.436 37.500 0.00 0.00 0.00 2.57
652 932 5.411781 TCGACTTTTCCTCTGCTTAATCTC 58.588 41.667 0.00 0.00 0.00 2.75
655 936 5.495640 ACTTTTCCTCTGCTTAATCTCCTG 58.504 41.667 0.00 0.00 0.00 3.86
746 1041 1.800805 AGCAACTCAACATCCTGACG 58.199 50.000 0.00 0.00 0.00 4.35
758 1053 2.472695 TCCTGACGTTGGGAATTCTG 57.527 50.000 5.23 0.00 0.00 3.02
762 1057 2.738846 CTGACGTTGGGAATTCTGTCTG 59.261 50.000 5.23 6.61 0.00 3.51
769 1069 5.586243 CGTTGGGAATTCTGTCTGTAATGAT 59.414 40.000 5.23 0.00 0.00 2.45
777 1077 6.706055 TTCTGTCTGTAATGATCAAACGTC 57.294 37.500 0.00 0.00 0.00 4.34
801 1127 6.600032 TCCGTTATTACACAATGCCAGTAAAT 59.400 34.615 0.00 0.00 32.18 1.40
887 1226 8.185506 TGTTTGGATAGAGTAGTGTGTTTCTA 57.814 34.615 0.00 0.00 0.00 2.10
902 1241 4.036262 GTGTTTCTACCACATGACAGCAAA 59.964 41.667 0.00 0.00 33.00 3.68
904 1243 3.769739 TCTACCACATGACAGCAAACT 57.230 42.857 0.00 0.00 0.00 2.66
910 1250 3.552699 CCACATGACAGCAAACTTTTGTG 59.447 43.478 0.00 0.00 40.24 3.33
915 1262 4.671377 TGACAGCAAACTTTTGTGTCATC 58.329 39.130 22.42 9.45 44.39 2.92
918 1265 5.343249 ACAGCAAACTTTTGTGTCATCTTC 58.657 37.500 3.74 0.00 40.24 2.87
920 1268 6.038356 CAGCAAACTTTTGTGTCATCTTCTT 58.962 36.000 3.74 0.00 40.24 2.52
921 1269 7.148086 ACAGCAAACTTTTGTGTCATCTTCTTA 60.148 33.333 3.74 0.00 40.24 2.10
931 1279 8.862325 TTGTGTCATCTTCTTATTTACCATGT 57.138 30.769 0.00 0.00 0.00 3.21
961 1315 0.804364 TCCTGTGTCGAAATGCATGC 59.196 50.000 11.82 11.82 0.00 4.06
968 1322 3.543494 GTGTCGAAATGCATGCACATAAC 59.457 43.478 25.37 17.34 0.00 1.89
1030 1388 2.762745 TCGGTGGTAGCTTCAAGTTTC 58.237 47.619 0.00 0.00 0.00 2.78
1044 1402 1.074951 GTTTCTGGTGGGAGTGGGG 59.925 63.158 0.00 0.00 0.00 4.96
1047 1405 4.351054 CTGGTGGGAGTGGGGTGC 62.351 72.222 0.00 0.00 0.00 5.01
1356 1771 2.851195 AGGTATGCAAACATCCGATCC 58.149 47.619 0.00 0.00 37.74 3.36
1408 1825 8.479689 TCATAATAAATGGAACCTCTTGTCGTA 58.520 33.333 0.00 0.00 0.00 3.43
1460 1877 6.766429 TCTCTTCCTTACTGGTTAGGTTTTC 58.234 40.000 5.82 0.00 37.07 2.29
1461 1878 5.872963 TCTTCCTTACTGGTTAGGTTTTCC 58.127 41.667 5.82 0.00 37.39 3.13
1467 1884 4.274794 ACTGGTTAGGTTTTCCCCTTTT 57.725 40.909 0.00 0.00 41.86 2.27
1607 2029 0.933796 GCCGCATCTAGAACAAGAGC 59.066 55.000 0.00 0.00 0.00 4.09
1608 2030 1.740380 GCCGCATCTAGAACAAGAGCA 60.740 52.381 0.00 0.00 0.00 4.26
1609 2031 2.621338 CCGCATCTAGAACAAGAGCAA 58.379 47.619 0.00 0.00 0.00 3.91
1610 2032 2.606725 CCGCATCTAGAACAAGAGCAAG 59.393 50.000 0.00 0.00 0.00 4.01
1611 2033 2.606725 CGCATCTAGAACAAGAGCAAGG 59.393 50.000 0.00 0.00 0.00 3.61
1612 2034 2.354199 GCATCTAGAACAAGAGCAAGGC 59.646 50.000 0.00 0.00 0.00 4.35
1613 2035 3.603532 CATCTAGAACAAGAGCAAGGCA 58.396 45.455 0.00 0.00 0.00 4.75
1616 2038 4.655963 TCTAGAACAAGAGCAAGGCAAAT 58.344 39.130 0.00 0.00 0.00 2.32
1617 2039 3.930634 AGAACAAGAGCAAGGCAAATC 57.069 42.857 0.00 0.00 0.00 2.17
1621 2044 2.287788 ACAAGAGCAAGGCAAATCAACG 60.288 45.455 0.00 0.00 0.00 4.10
1633 2056 0.966179 AATCAACGGGGAAGCAAACC 59.034 50.000 0.00 0.00 0.00 3.27
1700 2123 2.716217 GCTTTGGCTGGATCTGTAGTT 58.284 47.619 0.00 0.00 35.22 2.24
1701 2124 2.421424 GCTTTGGCTGGATCTGTAGTTG 59.579 50.000 0.00 0.00 35.22 3.16
1724 2158 5.245301 TGAAAACAAGTAGCTAGCCACTCTA 59.755 40.000 16.38 0.00 0.00 2.43
1726 2160 3.970842 ACAAGTAGCTAGCCACTCTAGT 58.029 45.455 16.38 12.16 45.22 2.57
1727 2161 3.949113 ACAAGTAGCTAGCCACTCTAGTC 59.051 47.826 16.38 0.00 45.22 2.59
1728 2162 4.204012 CAAGTAGCTAGCCACTCTAGTCT 58.796 47.826 16.38 0.00 45.22 3.24
1730 2164 3.714798 AGTAGCTAGCCACTCTAGTCTCT 59.285 47.826 10.24 0.00 45.22 3.10
1731 2165 4.903049 AGTAGCTAGCCACTCTAGTCTCTA 59.097 45.833 10.24 0.00 45.22 2.43
1732 2166 4.351874 AGCTAGCCACTCTAGTCTCTAG 57.648 50.000 12.13 9.30 45.22 2.43
1733 2167 3.971305 AGCTAGCCACTCTAGTCTCTAGA 59.029 47.826 12.13 6.37 45.22 2.43
1776 2210 0.467844 TCATGTTGGCCTTGCAGTGT 60.468 50.000 3.32 0.00 0.00 3.55
1978 2440 2.806453 CGTGTCACGAACAAACGTATG 58.194 47.619 20.75 0.00 46.05 2.39
1980 2442 2.220133 GTGTCACGAACAAACGTATGCT 59.780 45.455 0.00 0.00 44.76 3.79
1981 2443 2.219903 TGTCACGAACAAACGTATGCTG 59.780 45.455 0.00 0.00 44.76 4.41
1983 2445 2.867368 TCACGAACAAACGTATGCTGTT 59.133 40.909 3.32 3.32 44.76 3.16
2097 2564 1.152830 GTTGAACTTCCAGCCCCCA 59.847 57.895 0.00 0.00 0.00 4.96
2139 2606 4.819761 GCCTCGGCGCTCATCACA 62.820 66.667 7.64 0.00 0.00 3.58
2153 2620 2.547640 ATCACAAGCAGGCCGAGCAT 62.548 55.000 22.53 10.24 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.762522 ATCTATGCAGAGGCCGGGTG 61.763 60.000 8.78 0.00 40.13 4.61
1 2 0.178932 TATCTATGCAGAGGCCGGGT 60.179 55.000 8.78 0.00 40.13 5.28
2 3 0.976641 TTATCTATGCAGAGGCCGGG 59.023 55.000 8.78 0.00 40.13 5.73
3 4 1.895798 TCTTATCTATGCAGAGGCCGG 59.104 52.381 8.78 0.00 40.13 6.13
4 5 3.056250 ACATCTTATCTATGCAGAGGCCG 60.056 47.826 8.78 0.00 40.13 6.13
6 7 5.866633 GTGTACATCTTATCTATGCAGAGGC 59.133 44.000 8.78 0.00 41.68 4.70
8 9 6.585702 GCTGTGTACATCTTATCTATGCAGAG 59.414 42.308 0.69 0.69 33.22 3.35
9 10 6.450545 GCTGTGTACATCTTATCTATGCAGA 58.549 40.000 0.00 0.00 34.56 4.26
10 11 5.636965 GGCTGTGTACATCTTATCTATGCAG 59.363 44.000 0.00 0.00 0.00 4.41
11 12 5.070313 TGGCTGTGTACATCTTATCTATGCA 59.930 40.000 0.00 0.00 0.00 3.96
12 13 5.541845 TGGCTGTGTACATCTTATCTATGC 58.458 41.667 0.00 0.00 0.00 3.14
13 14 7.495606 TGTTTGGCTGTGTACATCTTATCTATG 59.504 37.037 0.00 0.00 0.00 2.23
14 15 7.564793 TGTTTGGCTGTGTACATCTTATCTAT 58.435 34.615 0.00 0.00 0.00 1.98
15 16 6.941857 TGTTTGGCTGTGTACATCTTATCTA 58.058 36.000 0.00 0.00 0.00 1.98
16 17 5.804639 TGTTTGGCTGTGTACATCTTATCT 58.195 37.500 0.00 0.00 0.00 1.98
17 18 6.494893 TTGTTTGGCTGTGTACATCTTATC 57.505 37.500 0.00 0.00 0.00 1.75
18 19 8.752005 ATATTGTTTGGCTGTGTACATCTTAT 57.248 30.769 0.00 0.00 0.00 1.73
19 20 7.282224 GGATATTGTTTGGCTGTGTACATCTTA 59.718 37.037 0.00 0.00 0.00 2.10
20 21 6.095440 GGATATTGTTTGGCTGTGTACATCTT 59.905 38.462 0.00 0.00 0.00 2.40
21 22 5.590259 GGATATTGTTTGGCTGTGTACATCT 59.410 40.000 0.00 0.00 0.00 2.90
22 23 5.590259 AGGATATTGTTTGGCTGTGTACATC 59.410 40.000 0.00 0.00 0.00 3.06
23 24 5.509498 AGGATATTGTTTGGCTGTGTACAT 58.491 37.500 0.00 0.00 0.00 2.29
24 25 4.917385 AGGATATTGTTTGGCTGTGTACA 58.083 39.130 0.00 0.00 0.00 2.90
25 26 5.186198 AGAGGATATTGTTTGGCTGTGTAC 58.814 41.667 0.00 0.00 0.00 2.90
26 27 5.045942 TGAGAGGATATTGTTTGGCTGTGTA 60.046 40.000 0.00 0.00 0.00 2.90
27 28 4.263462 TGAGAGGATATTGTTTGGCTGTGT 60.263 41.667 0.00 0.00 0.00 3.72
28 29 4.264253 TGAGAGGATATTGTTTGGCTGTG 58.736 43.478 0.00 0.00 0.00 3.66
29 30 4.018960 ACTGAGAGGATATTGTTTGGCTGT 60.019 41.667 0.00 0.00 0.00 4.40
30 31 4.521146 ACTGAGAGGATATTGTTTGGCTG 58.479 43.478 0.00 0.00 0.00 4.85
31 32 4.851639 ACTGAGAGGATATTGTTTGGCT 57.148 40.909 0.00 0.00 0.00 4.75
32 33 4.943705 TGAACTGAGAGGATATTGTTTGGC 59.056 41.667 0.00 0.00 0.00 4.52
33 34 7.452880 TTTGAACTGAGAGGATATTGTTTGG 57.547 36.000 0.00 0.00 0.00 3.28
34 35 8.786898 TCTTTTGAACTGAGAGGATATTGTTTG 58.213 33.333 0.00 0.00 0.00 2.93
35 36 8.924511 TCTTTTGAACTGAGAGGATATTGTTT 57.075 30.769 0.00 0.00 0.00 2.83
36 37 8.924511 TTCTTTTGAACTGAGAGGATATTGTT 57.075 30.769 0.00 0.00 32.77 2.83
37 38 8.924511 TTTCTTTTGAACTGAGAGGATATTGT 57.075 30.769 0.00 0.00 38.30 2.71
70 71 6.342111 TGTTTTCCTTGTATTTCGCCTTTTT 58.658 32.000 0.00 0.00 0.00 1.94
71 72 5.908341 TGTTTTCCTTGTATTTCGCCTTTT 58.092 33.333 0.00 0.00 0.00 2.27
72 73 5.523438 TGTTTTCCTTGTATTTCGCCTTT 57.477 34.783 0.00 0.00 0.00 3.11
73 74 5.010617 ACATGTTTTCCTTGTATTTCGCCTT 59.989 36.000 0.00 0.00 30.21 4.35
74 75 4.522789 ACATGTTTTCCTTGTATTTCGCCT 59.477 37.500 0.00 0.00 30.21 5.52
75 76 4.805219 ACATGTTTTCCTTGTATTTCGCC 58.195 39.130 0.00 0.00 30.21 5.54
76 77 6.608610 ACTACATGTTTTCCTTGTATTTCGC 58.391 36.000 2.30 0.00 34.33 4.70
77 78 9.916397 GATACTACATGTTTTCCTTGTATTTCG 57.084 33.333 2.30 0.00 34.33 3.46
79 80 8.889717 CGGATACTACATGTTTTCCTTGTATTT 58.110 33.333 2.30 0.00 34.33 1.40
80 81 8.044908 ACGGATACTACATGTTTTCCTTGTATT 58.955 33.333 2.30 0.00 34.33 1.89
81 82 7.562135 ACGGATACTACATGTTTTCCTTGTAT 58.438 34.615 2.30 2.48 34.33 2.29
82 83 6.938507 ACGGATACTACATGTTTTCCTTGTA 58.061 36.000 2.30 0.00 33.78 2.41
83 84 5.801380 ACGGATACTACATGTTTTCCTTGT 58.199 37.500 2.30 0.00 35.73 3.16
84 85 9.537192 TTATACGGATACTACATGTTTTCCTTG 57.463 33.333 2.30 0.00 31.44 3.61
85 86 9.538508 GTTATACGGATACTACATGTTTTCCTT 57.461 33.333 2.30 2.30 31.44 3.36
86 87 7.864379 CGTTATACGGATACTACATGTTTTCCT 59.136 37.037 2.30 0.00 38.08 3.36
87 88 7.358683 GCGTTATACGGATACTACATGTTTTCC 60.359 40.741 2.30 4.90 42.82 3.13
88 89 7.358683 GGCGTTATACGGATACTACATGTTTTC 60.359 40.741 2.30 0.00 42.82 2.29
89 90 6.421801 GGCGTTATACGGATACTACATGTTTT 59.578 38.462 2.30 0.00 42.82 2.43
90 91 5.922544 GGCGTTATACGGATACTACATGTTT 59.077 40.000 2.30 0.00 42.82 2.83
91 92 5.242393 AGGCGTTATACGGATACTACATGTT 59.758 40.000 2.30 0.00 42.82 2.71
92 93 4.763793 AGGCGTTATACGGATACTACATGT 59.236 41.667 2.69 2.69 42.82 3.21
93 94 5.306532 AGGCGTTATACGGATACTACATG 57.693 43.478 1.14 0.00 42.82 3.21
94 95 7.452880 TTTAGGCGTTATACGGATACTACAT 57.547 36.000 1.14 0.00 42.82 2.29
95 96 6.568462 GCTTTAGGCGTTATACGGATACTACA 60.568 42.308 1.14 0.00 42.82 2.74
96 97 5.797434 GCTTTAGGCGTTATACGGATACTAC 59.203 44.000 1.14 0.00 42.82 2.73
97 98 5.942872 GCTTTAGGCGTTATACGGATACTA 58.057 41.667 1.14 0.00 42.82 1.82
98 99 4.802999 GCTTTAGGCGTTATACGGATACT 58.197 43.478 1.14 0.00 42.82 2.12
112 113 2.124695 CCCACCTCCGCTTTAGGC 60.125 66.667 0.00 0.00 37.67 3.93
113 114 2.124695 GCCCACCTCCGCTTTAGG 60.125 66.667 0.00 0.00 40.20 2.69
114 115 2.124695 GGCCCACCTCCGCTTTAG 60.125 66.667 0.00 0.00 0.00 1.85
115 116 1.858739 ATTGGCCCACCTCCGCTTTA 61.859 55.000 0.00 0.00 36.63 1.85
116 117 3.224007 ATTGGCCCACCTCCGCTTT 62.224 57.895 0.00 0.00 36.63 3.51
117 118 3.645268 GATTGGCCCACCTCCGCTT 62.645 63.158 0.00 0.00 36.63 4.68
118 119 4.115199 GATTGGCCCACCTCCGCT 62.115 66.667 0.00 0.00 36.63 5.52
120 121 1.632018 TTAGGATTGGCCCACCTCCG 61.632 60.000 14.34 0.00 35.78 4.63
121 122 0.183731 CTTAGGATTGGCCCACCTCC 59.816 60.000 14.34 8.48 37.37 4.30
122 123 1.213296 TCTTAGGATTGGCCCACCTC 58.787 55.000 14.34 0.00 37.37 3.85
123 124 1.777272 GATCTTAGGATTGGCCCACCT 59.223 52.381 15.09 15.09 37.37 4.00
124 125 1.494721 TGATCTTAGGATTGGCCCACC 59.505 52.381 0.00 0.22 37.37 4.61
125 126 3.152341 CATGATCTTAGGATTGGCCCAC 58.848 50.000 0.00 0.00 37.37 4.61
126 127 2.489619 GCATGATCTTAGGATTGGCCCA 60.490 50.000 0.00 0.00 37.37 5.36
127 128 2.165998 GCATGATCTTAGGATTGGCCC 58.834 52.381 0.00 0.00 37.37 5.80
128 129 2.818432 CAGCATGATCTTAGGATTGGCC 59.182 50.000 0.00 0.00 39.69 5.36
129 130 2.228343 GCAGCATGATCTTAGGATTGGC 59.772 50.000 0.00 0.00 39.69 4.52
130 131 2.818432 GGCAGCATGATCTTAGGATTGG 59.182 50.000 0.00 0.00 39.69 3.16
131 132 3.252701 GTGGCAGCATGATCTTAGGATTG 59.747 47.826 0.00 0.00 39.69 2.67
132 133 3.484407 GTGGCAGCATGATCTTAGGATT 58.516 45.455 0.00 0.00 39.69 3.01
133 134 2.224719 GGTGGCAGCATGATCTTAGGAT 60.225 50.000 12.58 0.00 39.69 3.24
134 135 1.141657 GGTGGCAGCATGATCTTAGGA 59.858 52.381 12.58 0.00 39.69 2.94
135 136 1.602311 GGTGGCAGCATGATCTTAGG 58.398 55.000 12.58 0.00 39.69 2.69
136 137 1.134007 TGGGTGGCAGCATGATCTTAG 60.134 52.381 19.48 0.00 39.69 2.18
137 138 0.918258 TGGGTGGCAGCATGATCTTA 59.082 50.000 19.48 0.00 39.69 2.10
138 139 0.260816 ATGGGTGGCAGCATGATCTT 59.739 50.000 19.48 0.00 39.69 2.40
139 140 0.467474 CATGGGTGGCAGCATGATCT 60.467 55.000 19.48 0.00 39.69 2.75
140 141 0.754217 ACATGGGTGGCAGCATGATC 60.754 55.000 25.12 8.91 39.69 2.92
141 142 0.324923 AACATGGGTGGCAGCATGAT 60.325 50.000 25.12 16.18 39.69 2.45
142 143 1.077086 AACATGGGTGGCAGCATGA 59.923 52.632 25.12 9.60 39.69 3.07
143 144 1.216977 CAACATGGGTGGCAGCATG 59.783 57.895 19.48 19.83 40.87 4.06
144 145 1.985662 CCAACATGGGTGGCAGCAT 60.986 57.895 19.48 7.36 32.67 3.79
145 146 2.601067 CCAACATGGGTGGCAGCA 60.601 61.111 19.48 5.16 32.67 4.41
154 155 4.867086 AGGGATACTTTTACCCAACATGG 58.133 43.478 0.00 0.00 45.43 3.66
155 156 4.574828 CGAGGGATACTTTTACCCAACATG 59.425 45.833 0.00 0.00 45.43 3.21
156 157 4.777463 CGAGGGATACTTTTACCCAACAT 58.223 43.478 0.00 0.00 45.43 2.71
157 158 3.620472 GCGAGGGATACTTTTACCCAACA 60.620 47.826 0.00 0.00 45.43 3.33
158 159 2.941064 GCGAGGGATACTTTTACCCAAC 59.059 50.000 0.00 0.00 45.43 3.77
159 160 2.092807 GGCGAGGGATACTTTTACCCAA 60.093 50.000 0.00 0.00 45.43 4.12
160 161 1.487558 GGCGAGGGATACTTTTACCCA 59.512 52.381 0.00 0.00 45.43 4.51
161 162 1.539712 CGGCGAGGGATACTTTTACCC 60.540 57.143 0.00 0.00 43.55 3.69
162 163 1.137675 ACGGCGAGGGATACTTTTACC 59.862 52.381 16.62 0.00 0.00 2.85
163 164 2.591571 ACGGCGAGGGATACTTTTAC 57.408 50.000 16.62 0.00 0.00 2.01
164 165 2.035066 GCTACGGCGAGGGATACTTTTA 59.965 50.000 16.62 0.00 0.00 1.52
165 166 1.202498 GCTACGGCGAGGGATACTTTT 60.202 52.381 16.62 0.00 0.00 2.27
166 167 0.388294 GCTACGGCGAGGGATACTTT 59.612 55.000 16.62 0.00 0.00 2.66
167 168 1.461911 GGCTACGGCGAGGGATACTT 61.462 60.000 16.62 0.00 39.81 2.24
168 169 1.902432 GGCTACGGCGAGGGATACT 60.902 63.158 16.62 0.00 39.81 2.12
169 170 1.864725 GAGGCTACGGCGAGGGATAC 61.865 65.000 16.62 0.00 39.81 2.24
170 171 1.602888 GAGGCTACGGCGAGGGATA 60.603 63.158 16.62 0.00 39.81 2.59
171 172 2.913060 GAGGCTACGGCGAGGGAT 60.913 66.667 16.62 0.00 39.81 3.85
174 175 2.701163 GATTGGAGGCTACGGCGAGG 62.701 65.000 16.62 6.71 39.81 4.63
175 176 1.300233 GATTGGAGGCTACGGCGAG 60.300 63.158 16.62 8.03 39.81 5.03
176 177 2.812499 GATTGGAGGCTACGGCGA 59.188 61.111 16.62 0.00 39.81 5.54
177 178 2.658593 CGATTGGAGGCTACGGCG 60.659 66.667 4.80 4.80 39.81 6.46
178 179 1.883084 CACGATTGGAGGCTACGGC 60.883 63.158 0.00 0.00 37.82 5.68
179 180 0.742505 TACACGATTGGAGGCTACGG 59.257 55.000 0.00 0.00 0.00 4.02
180 181 1.133598 TGTACACGATTGGAGGCTACG 59.866 52.381 0.00 0.00 0.00 3.51
181 182 2.094390 TGTGTACACGATTGGAGGCTAC 60.094 50.000 20.61 0.00 0.00 3.58
182 183 2.094390 GTGTGTACACGATTGGAGGCTA 60.094 50.000 20.61 0.00 37.10 3.93
183 184 0.973632 TGTGTACACGATTGGAGGCT 59.026 50.000 20.61 0.00 0.00 4.58
184 185 1.076332 GTGTGTACACGATTGGAGGC 58.924 55.000 20.61 0.00 37.10 4.70
194 195 4.000988 CCTGTTTATGGAGGTGTGTACAC 58.999 47.826 19.36 19.36 45.72 2.90
195 196 3.649023 ACCTGTTTATGGAGGTGTGTACA 59.351 43.478 0.00 0.00 41.27 2.90
196 197 4.020485 AGACCTGTTTATGGAGGTGTGTAC 60.020 45.833 0.00 0.00 42.95 2.90
197 198 4.164981 AGACCTGTTTATGGAGGTGTGTA 58.835 43.478 0.00 0.00 42.95 2.90
198 199 2.979678 AGACCTGTTTATGGAGGTGTGT 59.020 45.455 0.00 0.00 42.95 3.72
199 200 3.600388 GAGACCTGTTTATGGAGGTGTG 58.400 50.000 0.00 0.00 42.95 3.82
200 201 2.233922 CGAGACCTGTTTATGGAGGTGT 59.766 50.000 0.00 0.00 42.95 4.16
201 202 2.496070 TCGAGACCTGTTTATGGAGGTG 59.504 50.000 0.00 0.00 42.95 4.00
202 203 2.816411 TCGAGACCTGTTTATGGAGGT 58.184 47.619 0.00 0.00 45.73 3.85
203 204 4.100189 AGAATCGAGACCTGTTTATGGAGG 59.900 45.833 0.00 0.00 35.26 4.30
204 205 5.269505 AGAATCGAGACCTGTTTATGGAG 57.730 43.478 0.00 0.00 0.00 3.86
205 206 4.099573 GGAGAATCGAGACCTGTTTATGGA 59.900 45.833 0.00 0.00 34.37 3.41
206 207 4.141937 TGGAGAATCGAGACCTGTTTATGG 60.142 45.833 0.00 0.00 34.37 2.74
207 208 4.806247 GTGGAGAATCGAGACCTGTTTATG 59.194 45.833 0.00 0.00 34.37 1.90
208 209 4.466370 TGTGGAGAATCGAGACCTGTTTAT 59.534 41.667 0.00 0.00 34.37 1.40
209 210 3.830178 TGTGGAGAATCGAGACCTGTTTA 59.170 43.478 0.00 0.00 34.37 2.01
210 211 2.632996 TGTGGAGAATCGAGACCTGTTT 59.367 45.455 0.00 0.00 34.37 2.83
211 212 2.028930 GTGTGGAGAATCGAGACCTGTT 60.029 50.000 0.00 0.00 30.86 3.16
212 213 1.546476 GTGTGGAGAATCGAGACCTGT 59.454 52.381 0.00 0.00 30.86 4.00
213 214 1.468224 CGTGTGGAGAATCGAGACCTG 60.468 57.143 0.00 0.00 33.54 4.00
214 215 0.811915 CGTGTGGAGAATCGAGACCT 59.188 55.000 0.00 0.00 33.54 3.85
215 216 0.526662 ACGTGTGGAGAATCGAGACC 59.473 55.000 0.00 0.00 33.54 3.85
216 217 1.986378 CAACGTGTGGAGAATCGAGAC 59.014 52.381 0.00 0.00 33.77 3.36
217 218 1.611977 ACAACGTGTGGAGAATCGAGA 59.388 47.619 0.00 0.00 34.37 4.04
218 219 2.065993 ACAACGTGTGGAGAATCGAG 57.934 50.000 0.00 0.00 34.37 4.04
219 220 2.815503 TCTACAACGTGTGGAGAATCGA 59.184 45.455 9.38 0.00 44.84 3.59
220 221 3.211803 TCTACAACGTGTGGAGAATCG 57.788 47.619 9.38 0.00 44.84 3.34
226 227 1.884579 GTCCTCTCTACAACGTGTGGA 59.115 52.381 0.00 0.00 35.44 4.02
227 228 1.067776 GGTCCTCTCTACAACGTGTGG 60.068 57.143 0.00 0.00 0.00 4.17
228 229 1.611977 TGGTCCTCTCTACAACGTGTG 59.388 52.381 0.00 0.00 0.00 3.82
229 230 1.991121 TGGTCCTCTCTACAACGTGT 58.009 50.000 0.00 0.00 0.00 4.49
230 231 4.713824 TTATGGTCCTCTCTACAACGTG 57.286 45.455 0.00 0.00 0.00 4.49
231 232 4.380233 CGTTTATGGTCCTCTCTACAACGT 60.380 45.833 0.00 0.00 32.00 3.99
232 233 4.103357 CGTTTATGGTCCTCTCTACAACG 58.897 47.826 0.00 0.00 0.00 4.10
233 234 5.320549 TCGTTTATGGTCCTCTCTACAAC 57.679 43.478 0.00 0.00 0.00 3.32
234 235 5.713389 TCTTCGTTTATGGTCCTCTCTACAA 59.287 40.000 0.00 0.00 0.00 2.41
235 236 5.258841 TCTTCGTTTATGGTCCTCTCTACA 58.741 41.667 0.00 0.00 0.00 2.74
236 237 5.357596 ACTCTTCGTTTATGGTCCTCTCTAC 59.642 44.000 0.00 0.00 0.00 2.59
237 238 5.507637 ACTCTTCGTTTATGGTCCTCTCTA 58.492 41.667 0.00 0.00 0.00 2.43
238 239 4.345854 ACTCTTCGTTTATGGTCCTCTCT 58.654 43.478 0.00 0.00 0.00 3.10
239 240 4.440387 GGACTCTTCGTTTATGGTCCTCTC 60.440 50.000 0.00 0.00 39.79 3.20
240 241 3.447944 GGACTCTTCGTTTATGGTCCTCT 59.552 47.826 0.00 0.00 39.79 3.69
241 242 3.783191 GGACTCTTCGTTTATGGTCCTC 58.217 50.000 0.00 0.00 39.79 3.71
242 243 3.442076 AGGACTCTTCGTTTATGGTCCT 58.558 45.455 6.63 6.63 45.69 3.85
243 244 3.522553 CAGGACTCTTCGTTTATGGTCC 58.477 50.000 0.00 0.00 42.26 4.46
244 245 3.056035 ACCAGGACTCTTCGTTTATGGTC 60.056 47.826 0.00 0.00 33.38 4.02
245 246 2.904434 ACCAGGACTCTTCGTTTATGGT 59.096 45.455 0.00 0.00 33.66 3.55
246 247 3.611766 ACCAGGACTCTTCGTTTATGG 57.388 47.619 0.00 0.00 0.00 2.74
247 248 5.068234 TGTACCAGGACTCTTCGTTTATG 57.932 43.478 0.00 0.00 0.00 1.90
248 249 5.657302 AGATGTACCAGGACTCTTCGTTTAT 59.343 40.000 0.00 0.00 0.00 1.40
249 250 5.014858 AGATGTACCAGGACTCTTCGTTTA 58.985 41.667 0.00 0.00 0.00 2.01
250 251 3.833070 AGATGTACCAGGACTCTTCGTTT 59.167 43.478 0.00 0.00 0.00 3.60
251 252 3.193691 CAGATGTACCAGGACTCTTCGTT 59.806 47.826 0.00 0.00 0.00 3.85
252 253 2.755655 CAGATGTACCAGGACTCTTCGT 59.244 50.000 0.00 0.00 0.00 3.85
253 254 2.755655 ACAGATGTACCAGGACTCTTCG 59.244 50.000 0.00 0.00 0.00 3.79
254 255 5.194432 TCTACAGATGTACCAGGACTCTTC 58.806 45.833 0.00 0.00 0.00 2.87
255 256 5.194473 TCTACAGATGTACCAGGACTCTT 57.806 43.478 0.00 0.00 0.00 2.85
256 257 4.864483 TCTACAGATGTACCAGGACTCT 57.136 45.455 0.00 0.00 0.00 3.24
257 258 6.016108 GGTTATCTACAGATGTACCAGGACTC 60.016 46.154 15.22 0.00 38.92 3.36
258 259 5.834204 GGTTATCTACAGATGTACCAGGACT 59.166 44.000 15.22 0.00 38.92 3.85
259 260 5.834204 AGGTTATCTACAGATGTACCAGGAC 59.166 44.000 19.30 0.00 40.25 3.85
260 261 5.833667 CAGGTTATCTACAGATGTACCAGGA 59.166 44.000 19.30 0.00 40.25 3.86
261 262 5.598830 ACAGGTTATCTACAGATGTACCAGG 59.401 44.000 19.30 15.09 40.25 4.45
262 263 6.716934 ACAGGTTATCTACAGATGTACCAG 57.283 41.667 19.30 15.79 40.25 4.00
263 264 7.580007 TCTACAGGTTATCTACAGATGTACCA 58.420 38.462 19.30 6.17 40.25 3.25
264 265 8.638629 ATCTACAGGTTATCTACAGATGTACC 57.361 38.462 13.44 13.44 39.15 3.34
280 281 9.978336 GGAGGTAGTATAAGATTATCTACAGGT 57.022 37.037 15.86 0.00 32.08 4.00
281 282 9.976776 TGGAGGTAGTATAAGATTATCTACAGG 57.023 37.037 15.86 0.00 32.08 4.00
301 302 9.887862 ATCATCTTATATTTTTGGAATGGAGGT 57.112 29.630 0.00 0.00 0.00 3.85
308 309 9.820725 CTGCCAAATCATCTTATATTTTTGGAA 57.179 29.630 14.58 4.85 43.59 3.53
309 310 8.423349 CCTGCCAAATCATCTTATATTTTTGGA 58.577 33.333 14.58 1.88 43.59 3.53
310 311 7.172019 GCCTGCCAAATCATCTTATATTTTTGG 59.828 37.037 7.66 7.66 43.69 3.28
311 312 7.929785 AGCCTGCCAAATCATCTTATATTTTTG 59.070 33.333 0.00 0.00 0.00 2.44
312 313 8.026396 AGCCTGCCAAATCATCTTATATTTTT 57.974 30.769 0.00 0.00 0.00 1.94
313 314 7.607615 AGCCTGCCAAATCATCTTATATTTT 57.392 32.000 0.00 0.00 0.00 1.82
314 315 7.439381 CAAGCCTGCCAAATCATCTTATATTT 58.561 34.615 0.00 0.00 0.00 1.40
315 316 6.014840 CCAAGCCTGCCAAATCATCTTATATT 60.015 38.462 0.00 0.00 0.00 1.28
316 317 5.479375 CCAAGCCTGCCAAATCATCTTATAT 59.521 40.000 0.00 0.00 0.00 0.86
317 318 4.828939 CCAAGCCTGCCAAATCATCTTATA 59.171 41.667 0.00 0.00 0.00 0.98
318 319 3.640029 CCAAGCCTGCCAAATCATCTTAT 59.360 43.478 0.00 0.00 0.00 1.73
319 320 3.025978 CCAAGCCTGCCAAATCATCTTA 58.974 45.455 0.00 0.00 0.00 2.10
320 321 1.829222 CCAAGCCTGCCAAATCATCTT 59.171 47.619 0.00 0.00 0.00 2.40
321 322 1.006281 TCCAAGCCTGCCAAATCATCT 59.994 47.619 0.00 0.00 0.00 2.90
322 323 1.407979 CTCCAAGCCTGCCAAATCATC 59.592 52.381 0.00 0.00 0.00 2.92
323 324 1.272872 ACTCCAAGCCTGCCAAATCAT 60.273 47.619 0.00 0.00 0.00 2.45
324 325 0.112995 ACTCCAAGCCTGCCAAATCA 59.887 50.000 0.00 0.00 0.00 2.57
325 326 0.813821 GACTCCAAGCCTGCCAAATC 59.186 55.000 0.00 0.00 0.00 2.17
326 327 0.962356 CGACTCCAAGCCTGCCAAAT 60.962 55.000 0.00 0.00 0.00 2.32
327 328 1.600636 CGACTCCAAGCCTGCCAAA 60.601 57.895 0.00 0.00 0.00 3.28
328 329 2.032528 CGACTCCAAGCCTGCCAA 59.967 61.111 0.00 0.00 0.00 4.52
329 330 4.020617 CCGACTCCAAGCCTGCCA 62.021 66.667 0.00 0.00 0.00 4.92
330 331 2.180159 TTACCGACTCCAAGCCTGCC 62.180 60.000 0.00 0.00 0.00 4.85
331 332 0.107654 ATTACCGACTCCAAGCCTGC 60.108 55.000 0.00 0.00 0.00 4.85
332 333 3.069586 TGATATTACCGACTCCAAGCCTG 59.930 47.826 0.00 0.00 0.00 4.85
333 334 3.305720 TGATATTACCGACTCCAAGCCT 58.694 45.455 0.00 0.00 0.00 4.58
334 335 3.321111 TCTGATATTACCGACTCCAAGCC 59.679 47.826 0.00 0.00 0.00 4.35
335 336 4.551388 CTCTGATATTACCGACTCCAAGC 58.449 47.826 0.00 0.00 0.00 4.01
336 337 4.585162 ACCTCTGATATTACCGACTCCAAG 59.415 45.833 0.00 0.00 0.00 3.61
337 338 4.341235 CACCTCTGATATTACCGACTCCAA 59.659 45.833 0.00 0.00 0.00 3.53
338 339 3.889538 CACCTCTGATATTACCGACTCCA 59.110 47.826 0.00 0.00 0.00 3.86
339 340 3.256136 CCACCTCTGATATTACCGACTCC 59.744 52.174 0.00 0.00 0.00 3.85
340 341 3.890147 ACCACCTCTGATATTACCGACTC 59.110 47.826 0.00 0.00 0.00 3.36
341 342 3.637229 CACCACCTCTGATATTACCGACT 59.363 47.826 0.00 0.00 0.00 4.18
342 343 3.799232 GCACCACCTCTGATATTACCGAC 60.799 52.174 0.00 0.00 0.00 4.79
343 344 2.364324 GCACCACCTCTGATATTACCGA 59.636 50.000 0.00 0.00 0.00 4.69
344 345 2.365617 AGCACCACCTCTGATATTACCG 59.634 50.000 0.00 0.00 0.00 4.02
345 346 3.495100 CCAGCACCACCTCTGATATTACC 60.495 52.174 0.00 0.00 32.26 2.85
386 387 1.609626 TCCTCTACTGAGCTACCCCT 58.390 55.000 0.00 0.00 38.93 4.79
387 388 2.243810 CATCCTCTACTGAGCTACCCC 58.756 57.143 0.00 0.00 38.93 4.95
388 389 2.243810 CCATCCTCTACTGAGCTACCC 58.756 57.143 0.00 0.00 38.93 3.69
436 437 4.818546 CACCCTTCAAGAATACCATGCTAG 59.181 45.833 0.00 0.00 0.00 3.42
437 438 4.385199 CCACCCTTCAAGAATACCATGCTA 60.385 45.833 0.00 0.00 0.00 3.49
438 439 3.624777 CACCCTTCAAGAATACCATGCT 58.375 45.455 0.00 0.00 0.00 3.79
439 440 2.689983 CCACCCTTCAAGAATACCATGC 59.310 50.000 0.00 0.00 0.00 4.06
440 441 4.235079 TCCACCCTTCAAGAATACCATG 57.765 45.455 0.00 0.00 0.00 3.66
441 442 4.946160 TTCCACCCTTCAAGAATACCAT 57.054 40.909 0.00 0.00 0.00 3.55
455 465 8.204160 CCCTTTAAATTCTTCAATATTCCACCC 58.796 37.037 0.00 0.00 0.00 4.61
461 471 9.332713 TCCCAACCCTTTAAATTCTTCAATATT 57.667 29.630 0.00 0.00 0.00 1.28
467 477 6.041637 ACACTTCCCAACCCTTTAAATTCTTC 59.958 38.462 0.00 0.00 0.00 2.87
476 487 2.107726 GTCCTACACTTCCCAACCCTTT 59.892 50.000 0.00 0.00 0.00 3.11
485 496 5.669164 AAATCTCTCTGTCCTACACTTCC 57.331 43.478 0.00 0.00 0.00 3.46
487 498 7.015682 TGAGAAAAATCTCTCTGTCCTACACTT 59.984 37.037 7.31 0.00 42.11 3.16
488 499 6.495181 TGAGAAAAATCTCTCTGTCCTACACT 59.505 38.462 7.31 0.00 42.11 3.55
489 500 6.692486 TGAGAAAAATCTCTCTGTCCTACAC 58.308 40.000 7.31 0.00 42.11 2.90
490 501 6.918067 TGAGAAAAATCTCTCTGTCCTACA 57.082 37.500 7.31 0.00 42.11 2.74
500 514 8.804912 AGTATCAAGCAATGAGAAAAATCTCT 57.195 30.769 7.31 0.00 42.53 3.10
554 568 4.079385 TCCAGTGAGCCAGAGTACCTAATA 60.079 45.833 0.00 0.00 0.00 0.98
561 575 1.550327 CAGTCCAGTGAGCCAGAGTA 58.450 55.000 0.00 0.00 0.00 2.59
611 891 6.334102 AGTCGAGTCAGTTTAGAAGTGAAT 57.666 37.500 0.13 0.00 42.15 2.57
652 932 4.106925 GAGAGGTGGCTGCCCAGG 62.107 72.222 17.53 0.00 43.18 4.45
655 936 4.106925 CAGGAGAGGTGGCTGCCC 62.107 72.222 17.53 7.43 0.00 5.36
746 1041 6.599244 TGATCATTACAGACAGAATTCCCAAC 59.401 38.462 0.65 0.00 0.00 3.77
758 1053 3.924686 ACGGACGTTTGATCATTACAGAC 59.075 43.478 0.00 0.00 0.00 3.51
762 1057 7.842721 GTGTAATAACGGACGTTTGATCATTAC 59.157 37.037 21.40 21.40 39.31 1.89
769 1069 5.615106 GCATTGTGTAATAACGGACGTTTGA 60.615 40.000 15.64 0.00 39.31 2.69
777 1077 5.804692 TTACTGGCATTGTGTAATAACGG 57.195 39.130 0.00 0.00 0.00 4.44
801 1127 6.578944 TGCAGAAGAAAGTACAGAAGTTACA 58.421 36.000 0.00 0.00 0.00 2.41
805 1131 5.675538 ACTTGCAGAAGAAAGTACAGAAGT 58.324 37.500 0.00 0.00 41.99 3.01
887 1226 3.195396 ACAAAAGTTTGCTGTCATGTGGT 59.805 39.130 3.68 0.00 41.79 4.16
902 1241 9.349713 TGGTAAATAAGAAGATGACACAAAAGT 57.650 29.630 0.00 0.00 0.00 2.66
961 1315 7.036220 GGAGACGATGATATAAGGGTTATGTG 58.964 42.308 0.00 0.00 0.00 3.21
968 1322 4.090090 ACCTGGAGACGATGATATAAGGG 58.910 47.826 0.00 0.00 0.00 3.95
1030 1388 4.351054 GCACCCCACTCCCACCAG 62.351 72.222 0.00 0.00 0.00 4.00
1044 1402 1.134367 TGAGCTACATAGACACCGCAC 59.866 52.381 0.00 0.00 0.00 5.34
1047 1405 3.378742 AGTTCTGAGCTACATAGACACCG 59.621 47.826 0.00 0.00 0.00 4.94
1267 1677 9.426837 CACAAACCTTGTCATGATAAATTTCAT 57.573 29.630 6.35 0.00 43.23 2.57
1282 1692 6.947733 TCATCATAAAGATCCACAAACCTTGT 59.052 34.615 0.00 0.00 38.69 3.16
1408 1825 1.299976 GGGCACTCACGGGAAGATT 59.700 57.895 0.00 0.00 0.00 2.40
1510 1930 0.178068 TGGATGGACTAGCGCTTTCC 59.822 55.000 24.30 24.30 0.00 3.13
1539 1961 6.588719 TTTGAATATGGGTCTGAAGGTTTG 57.411 37.500 0.00 0.00 0.00 2.93
1607 2029 0.965439 TTCCCCGTTGATTTGCCTTG 59.035 50.000 0.00 0.00 0.00 3.61
1608 2030 1.256812 CTTCCCCGTTGATTTGCCTT 58.743 50.000 0.00 0.00 0.00 4.35
1609 2031 1.250840 GCTTCCCCGTTGATTTGCCT 61.251 55.000 0.00 0.00 0.00 4.75
1610 2032 1.215382 GCTTCCCCGTTGATTTGCC 59.785 57.895 0.00 0.00 0.00 4.52
1611 2033 0.316841 TTGCTTCCCCGTTGATTTGC 59.683 50.000 0.00 0.00 0.00 3.68
1612 2034 2.403259 GTTTGCTTCCCCGTTGATTTG 58.597 47.619 0.00 0.00 0.00 2.32
1613 2035 1.343142 GGTTTGCTTCCCCGTTGATTT 59.657 47.619 0.00 0.00 0.00 2.17
1616 2038 0.395862 TTGGTTTGCTTCCCCGTTGA 60.396 50.000 0.00 0.00 0.00 3.18
1617 2039 0.249280 GTTGGTTTGCTTCCCCGTTG 60.249 55.000 0.00 0.00 0.00 4.10
1621 2044 1.119684 AACTGTTGGTTTGCTTCCCC 58.880 50.000 0.00 0.00 33.90 4.81
1633 2056 5.982516 TGCTTAATGCTTAAACCAACTGTTG 59.017 36.000 13.50 13.50 43.37 3.33
1687 2110 6.867662 ACTTGTTTTCAACTACAGATCCAG 57.132 37.500 0.00 0.00 35.77 3.86
1689 2112 6.651225 AGCTACTTGTTTTCAACTACAGATCC 59.349 38.462 0.00 0.00 35.77 3.36
1696 2119 5.699458 GTGGCTAGCTACTTGTTTTCAACTA 59.301 40.000 22.73 0.00 35.77 2.24
1697 2120 4.515567 GTGGCTAGCTACTTGTTTTCAACT 59.484 41.667 22.73 0.00 35.77 3.16
1698 2121 4.515567 AGTGGCTAGCTACTTGTTTTCAAC 59.484 41.667 26.43 0.00 33.97 3.18
1700 2123 4.040461 AGAGTGGCTAGCTACTTGTTTTCA 59.960 41.667 31.29 7.02 37.88 2.69
1701 2124 4.570930 AGAGTGGCTAGCTACTTGTTTTC 58.429 43.478 31.29 18.86 37.88 2.29
1724 2158 9.730489 CCGTCAAGGTCATCTAGTCTAGAGACT 62.730 48.148 23.89 16.13 45.53 3.24
1726 2160 5.361427 CGTCAAGGTCATCTAGTCTAGAGA 58.639 45.833 14.79 9.54 38.38 3.10
1727 2161 4.513692 CCGTCAAGGTCATCTAGTCTAGAG 59.486 50.000 14.79 7.61 34.98 2.43
1728 2162 4.452825 CCGTCAAGGTCATCTAGTCTAGA 58.547 47.826 12.02 12.02 35.60 2.43
1730 2164 2.950309 GCCGTCAAGGTCATCTAGTCTA 59.050 50.000 0.00 0.00 43.70 2.59
1731 2165 1.751924 GCCGTCAAGGTCATCTAGTCT 59.248 52.381 0.00 0.00 43.70 3.24
1732 2166 1.534175 CGCCGTCAAGGTCATCTAGTC 60.534 57.143 0.00 0.00 43.70 2.59
1733 2167 0.456221 CGCCGTCAAGGTCATCTAGT 59.544 55.000 0.00 0.00 43.70 2.57
1744 2178 1.731709 CAACATGAAGATCGCCGTCAA 59.268 47.619 0.00 0.00 36.87 3.18
1793 2227 2.027192 GTCAAGGGGATGCACTACTTCA 60.027 50.000 0.00 0.00 0.00 3.02
1923 2357 3.809832 GTGTGTGTGCAGAGTTCAAGTAT 59.190 43.478 0.00 0.00 0.00 2.12
1975 2437 4.360563 GCTCGCTAGTTTCTAACAGCATA 58.639 43.478 11.58 2.82 36.20 3.14
1978 2440 1.584308 CGCTCGCTAGTTTCTAACAGC 59.416 52.381 0.00 0.00 34.43 4.40
1980 2442 1.734707 GCCGCTCGCTAGTTTCTAACA 60.735 52.381 0.00 0.00 0.00 2.41
1981 2443 0.922032 GCCGCTCGCTAGTTTCTAAC 59.078 55.000 0.00 0.00 0.00 2.34
1983 2445 1.063649 CGCCGCTCGCTAGTTTCTA 59.936 57.895 0.00 0.00 34.21 2.10
2070 2537 1.952635 GAAGTTCAACGTCGCCGGT 60.953 57.895 1.90 0.00 38.78 5.28
2097 2564 0.745845 AGTACACGGTCGGCGACTAT 60.746 55.000 35.42 22.69 32.47 2.12
2139 2606 2.124819 CTGATGCTCGGCCTGCTT 60.125 61.111 16.66 11.38 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.