>input_sequence_87297
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-----------------------------------------------------------------------------ATG
GGGCTTTTCGGTGGTAGCTTCAAGTTTCTGGTGGGAGTGGGGTGCGGTGTCTATGTAGCTCAGAACTACAACGTTCCAAA
TGTCAAGAAGCTGTTCAACACGTATGTTTTCCTGGCAAAGCACATTGAGGAAACATACCGTAAGCCG---AAGAAAGACG
ACAAAGACGAGTGA------------------------------------------------------------------
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>chr6B_1_TraesCS6B01G323000
CACCCGGCCTCTGCATAGATAAGATGTACACAGCCAAACAATATCCTCTCAGTTCAAAAGAAAAATAATAAAAAAGGCGA
AATACAAGGAAAACATGTAGTATCCGTATAACGCCTAAAGCGGAGGTGGGCCAATCCTAAGATCATGCTGCCACCCATGT
TGGGTAAAAGTATCCCTCGCCGTAGCCTCCAATCGTGTACACACCTCCATAAACAGGTCTCGATTCTCCACACGTTGTAG
AGAGGACCATAAACGAAGAGTCCTGGTACATCTGTAGATAACCTGTAGATAATCTTATACTACCTCCATTCCAAAAATAT
AAGATGATTTGGCAGGCTTGGAGTCGGTAATATCAGAGGTGGTGCTGGCCAAAAACCAGGGATGGAAGGGGTAGCTCAGT
AGAGGATGGGGCCTGTGGTAACAAGTGGTCGTGGTTCTAGCA---------TGGTATTCTTGAAGGGTGGAATATTGA-A
GAATTTAAAGGGTTGGGAAGTG---TAGGACAGAGAGATTTTTCTCATTGCTTGATACTATATAACACAGCTAGGCTTAA
ATACTCCTATTAGGTACTCTGGCTCACTGGACTGGA--------------------------------------------
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--------------------------------------------------------------CTAGGACTCATTCAGTCA
TTGGTCATTCATTCACTTCTAAACTGACTCGACTTTTCCTCTGCTTAATCTC-CTGGG------CAGCCACCTCTCCTGG
CACGTGTCTTTTATTCTTGCCGTGGTAGAGTCCTACTGGACTA--CAATCTATGAAGCAACT------CAACATCCTGAC
GTTGGGAATTCTGTCTGTAATG-----ATCAAACGTC--------------------------CGTTATTACACAATGCC
AGTAAATGTAACTTCTGT-ACTTTCTT--CTG-CAAGTACTTCAATACTAAATATGTGTGATTTAGCTTTATGTTTG---
------GATAGAGTAGTGTGTTTCTACCACATGACAGCAAACTTTT-GTGTCA-------TCTTCT-TATTTACCATGTT
TTTTTT------ACATCCTGTGTCGAAATGCATGCACATAACCC----TTATATCATCGTCTCCAGGTTTTCTCGCAATG
GGGCTTTTCGGTGGTAGCTTCAAGTTTCTGGTGGGAGTGGGGTGCGGTGTCTATGTAGCTCAGAACTACAACGTTCCAAA
TGTCAAGAAGCTGTTCAACACGTATGTTTTCCTGGCAAAGCACATTGAGGAAACATACCGTAAGCCG---AAGAAAGACG
ACAAAGACGAGTGA---TTATCGCACCCCTGGCG-AAAAGAAGTG--TA----CTCTGACATGACAGAAACGTGATCTTC
------------------------------AAGAGC---TTAGAACTACGACGGTGCATAGTGGGTAC------CTATGA
AATTTATCATGACAAGGTTTGTGGATCTTTATGATGAAA-CCTTAGTA----TTTTTTAAGTAGGAGAGAAGGTATGCAA
ACATCCGATCCATATATTATGGCACTAGTACAAGTTTCATAATAAATGGAACCTCTTG--TCGTAATCTTCCCGTGAGTG
CCCGATTTGCTATCTCTTCCTTACTGGTTAGGTTTTCCCCTTTTTTCT---AGATTTACTGGTTAGGTTTTTCCTGTGTC
AACAAAGGAGG--AAAGCGCTAGTCCATCCAGTTTTTTAGCAAACCTTCAGACCCATATTCAAATTAACAGGAATTATAA
CTCGCGATTGCCGCATCTAGAACAAGAGCAAGGCAAATC-AACGGGGAAGCAAACCAACAGTTGGTTTAAGCATTAAGCA
AACTAAAAAGCTTTAGTCCAAAGCTTTGGCTGGATCTGTAGTTG-----------AAAACAAGTAGCTAGCCACTCTAGT
CTCTAGACTAGATGACCTTGACGGCGATCTTCATGTTGGCCTTGCAGTGTCCGCGCACGGTGCAGATGAAGTAGTGCATC
CCCTTGACCAGCCTCACCTTGTCGTGCCCGCTGCGCAGCGCCCTTTTGCCCTTGGGCACCACGCAGCTCTGGTACGCCGC
CGCGTCCACGGCCGCAACGTCGTGCACCGCCCCGTTATACTTGAACTCTG----------------------------CA
CACACACTCACAAGCGCATCGTGTCACGAACAAACGTATGCTGTTAG-----AAACTAGCGAGCGGCGGCTAACAATGAA
GCAGACATCAACTCACCGAGCACGTCGCCGGCGCGGAAGGTCCTGCCCTTGGCCCAACCGGCGACGTTGAACTTCCAGCC
CCCATAGTCGCCGACCGTGTACTTGGCCGCCTCGGCGCTCATCACAAGCAGGCCGAGCATCAGCACCGCCGCGCCGAGGC
>chr6D_338
TTGGGGTCA-----------------------------------------------------------------------
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--------------------------GTAATATCAGAGGTGGTGCTGGCCAAAAACCAGGGATGGAGT-GGTAGCTCGGT
AGAGGATGGGTCCTGTGTTAACAAGTGGTCATGGTTGCTAGCATGGTATATTGGTATTCTTGGAAGGTGACATATTAG-A
GAATCTGAAGGGTTGAGGGAAGTGTTAGGACAGGGAGA--TTTCTCATTGCTTGA---AATATAAAAGAGCTAGGCTTAA
ATAGTCCGATTAGGCTGGC-------------------------------------------------------------
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-----CATTGTATCACTTCTTAACTGACTCGACTTTTCCTCTGCTTAATGTATCTCGG------CAGCCACCTCTCCTGC
CA-GTGTCTTTTATTCTTGCTGTTGTAGCATCCTACTGGACTACACAATCAATGAAGCAACTGAGCGGCAACATCCTGAC
TTTGGGAATTATATCTATAATATAATGACCAAACGTATGAGGTTGGAATCTGAAGAAATGAATCGTTATTACACAGTGCC
AGTAAACGTAGCTTCTGTTACTTTCTT--CTG-CG--------------AAATATGTGTCATTTGGCTTCATGTTTG---
------GAAAGGGTAGTGTGTTTCTGCTACATGACAGCAATCATTTTGTATCA-------TTTTTT-GTTTTCCCATG-T
TTTTTT------ACATCCTCTGTCGAGATGCATGTACATAA-CC----TTATATCATCGTCTCCAGGTTTTCTCGCGATG
GGGCTTTTCGGTGGTAGCTTCAAGTTTTTGGTGGGAGTGGGATGTGGTGTCTATGTAGCTCAGAACTACAACGTTCCAAA
TGTCAAGAAGCTGTTCAACACGTATGTTTTCCTGGCAAAGCACATTGAGGAAACATACCGTAAGCCG---AAGAAAGACG
ACAAAGACGAGTGA---TTATCGCACCCCTGGCG-AAGAGAAGTG--TA----CTCTGACATGACAGAAACGTGATCTTC
------------------------------AAGAACTTATTATAACTATGACGATGCATAGTGGGTAG------CTGTGA
AATTTATCGTGGCAAGGTTTGTGGATCTCTATGACGAAA-CCTTAGTA----TTTTTGAAGTAGGAGAGAAGGTATGCAA
ATATCCGATCGATATATTATGGCACTAGTACGAGTTTCACTATAAATGGAACCTCTTGTGTCGTCATCTTCCCCTGAGTG
CCCGATTTGCTATCTCTTCCTTACTGGTTAGGTTTTTTCCTTTATTTTTTGAGATTTACTGGTTAGGTTTTTCCTGTGTA
AACAAAGGATGGAAAAGCGCTAGTCCATCGTTTTCAG----AAAGCTTTAGACCCATATTCAAATTAACAGGAATTGTAA
CTCGCGGTTGCTGCATCTAGAACAAGAGTGCACGGCAA-----TGGGAAGCAAACTAACAGTTGGTTTAAGCATTAAGCA
AACTAAAAGGCTTTAGTCGAAAGCTTTGGATCGATCTGATCTGAATGTGGT------AACAAGTCACTAGCCACTTCTGG
TCC----CTAGATGACCCTGACAGCGATCTTCATGTTGGCCTTGCAGTGCCCGCGCACGGTGCAGACGAAGTAGTGCATC
CCCTTGACCAGCCTCACCTTGTCGTGCCCGCTGCGCAGCGCCCTTTTGCCCTTGGGCACCACACAGCTCTGGTACGCCGC
CGCGCCCACGGCCGCCACGTCGTGCACCGCCCCGTTGTACTTGAACTCTG----------------------------CA
CACACACTCACAAGCGCATCGTGTCACGAACGAACGCATATATTACTCCTACAAACTAGCGAGCGGCGGCTAACAATGAA
GCAGACATCAACTCACCGAGCACGTCGCCGGCGCGGAAGGTCCTGCCCTTGGCCCACCCGGCGACGTTGAACTTCCAGCC
CCCGTAGTCGCCGACCGTGTACTTGGCCGCCTCGGCGCTCATCGCGAGCAAGCCGAGCAGCAGCGCCGCCGCGCCGAGG-
>chr6A_347
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--------------------------GTAATATCAGAGGTGGTGCTGGCCAAAAATCAGGGATGGAGT-GGTAGCTCAGT
AGAGGATGGGTCCTGTGGTAACAAGTGGTCATGGTTGCTAGCATCGTATATTGGTATTTTTGGAAGGTGGCATATTTATA
GGATTTGAAGGGTTGAGGGAAGTGTTAGGACAGGGATA-TTTTCTCATTGCTTGA---AATATAACAGAGCTAGGCTTAA
ATACTCGGATTAGGGACTCGGCTC------ACTGGGCTAGGGCTCGGAAGACTATTGGATTAGT----------------
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-------------------------------------------------------------------ACTCATTCAGTCA
CTAGTCATTGTATCACTTCTAAACTGACTTGACTTTTCCTCTGCTTAATCTATCTCGG------CAGCCACCTCTCCTGG
CA-GTGTCTTTCATTCTTGCCGTGGTACCGTCCTACTGGACTTCACAATCAATGAAGCAACTGAGCAGCAACATCCTGAC
TTTGGAAATTATATCTATAATG-----ACCAAACATATGAGGTTGGAATCTGAAGAAATGAATCGTTATTACTCAGTGCC
AGTAAACGTAGCTTCTGTTACTTTCTT--TTG-CG--------------A------------------------------
-----------------------------------------CATTTTGTATCA-------TTTTTTTGTTTCCCCGTG-T
TTTTTT------ACATCCTCTGTCGAAATGCATGTTCATAA-CC----TTATATCATCATCTCCAGGTTTTCTCGCAATG
GGGCTTTTTGGTGGTGGCCTCAAGTTTTTGGTGGGAGTGGGATGTGGTGTCTATGTAGCTCAGAACTACAACGTTCCAAA
TGTCAAGAAGCTGTTCAACACGTATGTTTTCCTGGCAAAGCACATTGAGGAAACATACCGTAAGCCG---AAGAAAGACG
ACAAGGACGAGTGA---TTATCGCGCCCCTGGGCCAAAAGAAGTT--TG----TTCTGACATGACAGCAATGTGATCTTC
------------------------------AAGTGC---TTAGAAGTACGACGGTGCATAGTGGGTACTACTAGCTGTGA
AATTTACCATGGCAAGGTTTGTGGATCTTTATGATGAAA-CCTTAGTACGTATTTTTTAAGTAGGAGAGAGGGTATGCAA
ACATCCGATCGATATATCATGGCACCAGTACAAGTTTCATAATAAATGGAACCTCTTGTGTC-------TCCCGTGAGTG
CCCGATTTG-------------------------------------------------CTGGTTAGGTTTTTCCTGTGTC
AACAAAGGATGGAGAAGCGCTAGTCCATCCAGTTTTTTAGTAAGCCTTCAGACCCATATTCAAATTAACAGGAATTACAA
CTCGCGATTGCCGCACCTAGAACAAGAGTGCACGGATAAAAACTGGGAAGCAAACTAGCAGTTGGTTCAAGCATTAAGCA
AACTAAAAAGCTGTAGTCGGAAGCTTTGGATCGACCTGATCTGAATGCAGTTGACAAAACAGGTAGCTATAAACACT---
-------CTAGATGACCCTGACGGCGATCTTCATGTTGGCCTTGCAGTGCCCGCGCACGGTGCAGACGAAGTAGTGCATC
CCCTTGACCAGCCTCACCTTGTCGTGCCCGCTGCGCATCGCCCTCTTGCCCTTGGGCACCACGCAGCTCTGGTACGCCGC
CGCGTCCACGGCCGCCACGTCGTGCACCGCCCCGTTGTACTTGAACTCTGCACACACACACACACACACACACACACACA
CACACACACACAAGCGCGTCGTGTCACGAACAAACGCATAC----AG-----AAGCTAGCGAGCAGTAGCGGAG------
------ATCAGCTCACCGAGCACGTCGCCGGCGCGGAAGGTCCTCCCCTTGGCCCACCCGGCGACGTTGAACTTCCAGCC
CCCGTAGTCGCCCACCGTGTACTTGGCCGCCTCGGCGCTCATCACGAGCAGGCCGAGCAGCAGCA---------------
>chr5D_379
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----------------------------------------------------------GGGATGGAGC-GGTAGCTCAGT
AGAGGACGGGGCCTGTGGTAACAAGTGGTCGTGGTTGCTTGC--------------------------------------
---------------------------------------------------TTGA---TATATAACACAGCTAGGCTTAA
ATACTCTGATTAGGGACTCTGGCTCACTGGACTGGGCTAGGACTCAGAAGACTATTGGATTAGGAGTTTAGGAGGCTGTT
TGGATTGCAGCCTACAGCAGCCCAACCAAAAAATTGGTAGTTGACCAGGCGTGGGCGCATGTTTGGATCAGGGCCAATAA
TTTGGCTCGCCCTGTTCACACTAGCACCGGTAGTTCAGTTTCACGCCAATTTTTGGGAGAGTCACGGGCGAAAGAATCCC
GCGCCAATATTTTGGCAGCCCACGGATTGGCAGGGCTAGCAGGGGCACCATCCAAACACACCCTAGGACTCATTCAGTCA
TCGGCCATTCCTTCACTTGTAAACCGACTCAACTTTTCCTCTGCTTAATCTGCCTTGGCAGCCACCGCCACCTCTCCTGG
CACGTGTCTTTTATTCTTTCTGTGGTAGAGTCCTACTGGACTA--GAATCTATGAAGCAACTGAACGGCAACATTCTGA-
--------TTCTATCTATATTA-----ACCAAACATATGAGGGTGGAATCTGAAGACATGAATCACTGTTACACAATGGC
TGTAAACGTAGCTTCTGT-ACTTTCTTTCCTGGGAAGTACTTCAATACTAAATATGTGTCATTTAGCTTTGTGTTTG---
------GATATAGTAGTGTGTTTCTGCCACATGACAGCAATCATTTGTGCTGTATCATTTTTTTTC-GTCTTACCATG-T
TTTTTTTTACAAACATCCTGTGTCGAAATGCATGTACATAA-CCCCCCTTATATCATCGGCTCCAGGTTTTCTTGCAATG
G---TTTTCGGTGGCGGCTTCAAATTTTTAGTGGGAGTGGGATGTGGTGTCTATGTAGCTCAGAACTACAACGTTCCAAA
TGTCAAGAAGCTGTTCAACACGTATGTTTTCCTGGCAAAGCACGTTGAGGAAACTTACCGTAAGCCGCCGAAGAAAGAC-
-----GACGACTGA---TTATCATACCCATGGCG-AAAAGAAGTATATA----CTCTGACATTACAGAAACATGATCTGC
GTGAATATTAAAGTT-GTTATGATCTTTTCAAGAGC---TGAGAACACC-----------------AG------CTGTGA
AGTTTGTCATGGCAAGGTTTGTGGATCTTTATGATAAAA-CCTTAGTG----TTTTTTAA--------------------
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>chr5B_791
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---------------------------------------------------------------------------ATGGC
AGTAAACGTAGCTTCTGT-ACTTTCTTTCCTG-GAAGCACTTCAGTACTAA--ATGTGTCATTTAGCTTTATTGTTTGGA
TATACCGATATAGTAGTGTGTTTCTGCCACATGACACTAATCATTTGTACTCCAGG-----TTTTT-GTCTTACCATG-T
TTA-TTTTACAAACATCCTGTGTGGAAATGCATGTACATAA-CCCCCCTTATATCATCGGCTCCAGGTTTTCTTGCAATG
G---TTTTCGGTGGCGGCTTCAAATTTTTAGTGGGAGTGGGATGTGGCGTCTATGTGGCTCAGAACTACAACGTTCCAAA
TGTCAAGAAGCTGTTCAACACGTATGTTTTCCTGGCAAAGCACGTTGAGGAAACGTACCGTAAGCCGCCGAAGAAAGAC-
-----GACGACTGATTATTATCATGCCCATGGCG-AAAAGAAGTATATATATACTCTGACTTGACAGAAACATGATCTTC
GTGAATGTTAAAAGGAGTTATGATCTTTTCAAGAGC---TGAGAACACC-----------------AG------CTGTGA
AGTTTGTCATGGCAAGGTTTGTGGATCTTTATGATGAAAACCTTATTG----TTTTTTAA--------------------
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>SNPs
SSSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------SSS-----------
------------------------------------SSSSSS--------------------S-S-----S-----S---
------S--------S-SSSS------------S----S----------------SSS----------------------
-------S------S--------------------S--------------------------------------------
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----------S----------------------------------------S---S------------------------
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S-----------S---S-----------S-------S-------------------------------------------
------S---S------------------------------------------------S--------------------
-------------------------S--------------S-S------S-----------S--S--SS---------S-
----------------------------------S------S--------------------------------------
---------------------------S-------------S--S-----------------------------------
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----------------------------------------------------------------------------S---
-----------S--------------------------------------------------------------------
----------S-----------------------------------------------------S---------------
------------------------------------SS-----S--S---------------------------------
---------S------------------------------S---------------------------------------
----------------------------SSSSSSS--SS----S-----------S------------------------
------------------S----------S-S------SSS-SS---------------------------------S-S
SS-SSSS----------S-------------------------------S----------------S-------------
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---------------S--------------------S-------------------------------------------
------------------------------------S--S-SS-S-----------------------------------
--------------------------------------------------------S-----------------------
---S-----------------------------------------S-------------S-------------------S
>forward_344
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----TGATTTGGCAGGCTTGGAGT--------------------------------------------------------
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>reverse_1930
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---------GGAAAGCGCTAGTCCATCCA---------------------------------------------------
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