Multiple sequence alignment - TraesCS6B01G316100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G316100 chr6B 100.000 2337 0 0 1 2337 564063852 564061516 0.000000e+00 4316.0
1 TraesCS6B01G316100 chr6B 93.939 198 10 2 25 221 53446057 53446253 4.880000e-77 298.0
2 TraesCS6B01G316100 chr6B 84.889 225 19 4 299 523 530850530 530850321 1.820000e-51 213.0
3 TraesCS6B01G316100 chr6D 93.667 1737 60 21 640 2337 377827554 377825829 0.000000e+00 2553.0
4 TraesCS6B01G316100 chr6D 88.670 203 10 4 327 528 348995168 348995358 3.880000e-58 235.0
5 TraesCS6B01G316100 chr6D 85.000 240 14 6 291 528 348839085 348839304 8.400000e-55 224.0
6 TraesCS6B01G316100 chr6D 87.624 202 8 6 330 528 348863089 348863276 3.910000e-53 219.0
7 TraesCS6B01G316100 chr6D 87.565 193 9 7 338 528 349215284 349215463 2.350000e-50 209.0
8 TraesCS6B01G316100 chr6D 88.194 144 4 6 386 528 349033142 349033273 2.400000e-35 159.0
9 TraesCS6B01G316100 chr6D 96.364 55 2 0 591 645 377827649 377827595 8.890000e-15 91.6
10 TraesCS6B01G316100 chr6A 88.273 1245 56 38 647 1838 519220122 519218915 0.000000e+00 1408.0
11 TraesCS6B01G316100 chr6A 91.552 509 20 6 1829 2337 519217793 519217308 0.000000e+00 680.0
12 TraesCS6B01G316100 chr6A 85.759 316 20 12 216 528 494878344 494878051 6.270000e-81 311.0
13 TraesCS6B01G316100 chr6A 85.489 317 19 10 216 528 495152469 495152176 2.920000e-79 305.0
14 TraesCS6B01G316100 chr6A 96.429 56 1 1 591 645 519220225 519220170 8.890000e-15 91.6
15 TraesCS6B01G316100 chr4B 95.288 191 9 0 25 215 20737275 20737085 1.050000e-78 303.0
16 TraesCS6B01G316100 chr4B 94.241 191 11 0 25 215 356712191 356712381 2.270000e-75 292.0
17 TraesCS6B01G316100 chr1D 94.819 193 9 1 25 216 213551057 213550865 1.360000e-77 300.0
18 TraesCS6B01G316100 chr4D 94.792 192 8 2 25 216 202679593 202679782 4.880000e-77 298.0
19 TraesCS6B01G316100 chrUn 94.271 192 11 0 25 216 8116194 8116003 6.320000e-76 294.0
20 TraesCS6B01G316100 chr7D 93.878 196 10 2 25 218 117216587 117216392 6.320000e-76 294.0
21 TraesCS6B01G316100 chr3D 94.301 193 10 1 25 216 5851728 5851920 6.320000e-76 294.0
22 TraesCS6B01G316100 chr2B 93.434 198 13 0 25 222 597538261 597538064 6.320000e-76 294.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G316100 chr6B 564061516 564063852 2336 True 4316.000000 4316 100.000000 1 2337 1 chr6B.!!$R2 2336
1 TraesCS6B01G316100 chr6D 377825829 377827649 1820 True 1322.300000 2553 95.015500 591 2337 2 chr6D.!!$R1 1746
2 TraesCS6B01G316100 chr6A 519217308 519220225 2917 True 726.533333 1408 92.084667 591 2337 3 chr6A.!!$R3 1746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
307 308 0.038166 ATTGGCGATGGGTGAACAGT 59.962 50.0 0.0 0.0 0.0 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1863 3116 0.468226 ACACGGCTCTGAACTTCCAA 59.532 50.0 0.0 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.844420 CGTGGGGAAGAGATGAGC 57.156 61.111 0.00 0.00 0.00 4.26
18 19 1.900351 CGTGGGGAAGAGATGAGCA 59.100 57.895 0.00 0.00 0.00 4.26
19 20 0.467384 CGTGGGGAAGAGATGAGCAT 59.533 55.000 0.00 0.00 0.00 3.79
20 21 1.539929 CGTGGGGAAGAGATGAGCATC 60.540 57.143 2.27 2.27 38.09 3.91
33 34 2.743553 TGAGCATCTCCTCATGACAGA 58.256 47.619 0.00 0.00 36.96 3.41
34 35 3.306613 TGAGCATCTCCTCATGACAGAT 58.693 45.455 6.60 6.60 36.96 2.90
35 36 3.710165 TGAGCATCTCCTCATGACAGATT 59.290 43.478 9.01 0.00 36.96 2.40
36 37 4.163649 TGAGCATCTCCTCATGACAGATTT 59.836 41.667 9.01 2.92 36.96 2.17
37 38 4.706035 AGCATCTCCTCATGACAGATTTC 58.294 43.478 9.01 5.68 0.00 2.17
38 39 4.409574 AGCATCTCCTCATGACAGATTTCT 59.590 41.667 9.01 7.31 0.00 2.52
39 40 4.751098 GCATCTCCTCATGACAGATTTCTC 59.249 45.833 9.01 0.00 0.00 2.87
40 41 5.453621 GCATCTCCTCATGACAGATTTCTCT 60.454 44.000 9.01 0.00 0.00 3.10
41 42 6.584488 CATCTCCTCATGACAGATTTCTCTT 58.416 40.000 9.01 0.00 0.00 2.85
42 43 6.617782 TCTCCTCATGACAGATTTCTCTTT 57.382 37.500 0.00 0.00 0.00 2.52
43 44 7.013823 TCTCCTCATGACAGATTTCTCTTTT 57.986 36.000 0.00 0.00 0.00 2.27
44 45 7.456725 TCTCCTCATGACAGATTTCTCTTTTT 58.543 34.615 0.00 0.00 0.00 1.94
73 74 9.958234 TTTCTTGATGTATGTTTCGAATTTTGA 57.042 25.926 0.00 0.00 0.00 2.69
75 76 9.773328 TCTTGATGTATGTTTCGAATTTTGATC 57.227 29.630 0.00 0.00 0.00 2.92
76 77 9.778993 CTTGATGTATGTTTCGAATTTTGATCT 57.221 29.630 0.00 0.00 0.00 2.75
77 78 9.558648 TTGATGTATGTTTCGAATTTTGATCTG 57.441 29.630 0.00 0.00 0.00 2.90
78 79 8.945057 TGATGTATGTTTCGAATTTTGATCTGA 58.055 29.630 0.00 0.00 0.00 3.27
79 80 9.773328 GATGTATGTTTCGAATTTTGATCTGAA 57.227 29.630 0.00 0.00 0.00 3.02
107 108 9.930158 TTTTTAGGGGTTATCTTAATATGTGCT 57.070 29.630 0.00 0.00 0.00 4.40
108 109 8.918202 TTTAGGGGTTATCTTAATATGTGCTG 57.082 34.615 0.00 0.00 0.00 4.41
109 110 6.515512 AGGGGTTATCTTAATATGTGCTGT 57.484 37.500 0.00 0.00 0.00 4.40
110 111 6.299141 AGGGGTTATCTTAATATGTGCTGTG 58.701 40.000 0.00 0.00 0.00 3.66
111 112 6.101150 AGGGGTTATCTTAATATGTGCTGTGA 59.899 38.462 0.00 0.00 0.00 3.58
112 113 6.770785 GGGGTTATCTTAATATGTGCTGTGAA 59.229 38.462 0.00 0.00 0.00 3.18
113 114 7.255139 GGGGTTATCTTAATATGTGCTGTGAAC 60.255 40.741 0.00 0.00 0.00 3.18
114 115 7.282224 GGGTTATCTTAATATGTGCTGTGAACA 59.718 37.037 0.00 0.00 0.00 3.18
115 116 8.840321 GGTTATCTTAATATGTGCTGTGAACAT 58.160 33.333 0.00 0.00 41.14 2.71
116 117 9.655769 GTTATCTTAATATGTGCTGTGAACATG 57.344 33.333 1.67 0.00 38.67 3.21
117 118 6.122850 TCTTAATATGTGCTGTGAACATGC 57.877 37.500 1.67 0.00 38.67 4.06
118 119 5.882000 TCTTAATATGTGCTGTGAACATGCT 59.118 36.000 1.67 0.00 38.67 3.79
119 120 6.375174 TCTTAATATGTGCTGTGAACATGCTT 59.625 34.615 1.67 0.00 38.67 3.91
120 121 2.717580 ATGTGCTGTGAACATGCTTG 57.282 45.000 0.00 0.00 36.89 4.01
121 122 1.677942 TGTGCTGTGAACATGCTTGA 58.322 45.000 6.60 0.00 0.00 3.02
122 123 2.232399 TGTGCTGTGAACATGCTTGAT 58.768 42.857 6.60 0.00 0.00 2.57
123 124 2.624364 TGTGCTGTGAACATGCTTGATT 59.376 40.909 6.60 0.00 0.00 2.57
124 125 3.068448 TGTGCTGTGAACATGCTTGATTT 59.932 39.130 6.60 0.00 0.00 2.17
125 126 4.053295 GTGCTGTGAACATGCTTGATTTT 58.947 39.130 6.60 0.00 0.00 1.82
126 127 4.508861 GTGCTGTGAACATGCTTGATTTTT 59.491 37.500 6.60 0.00 0.00 1.94
162 163 9.798885 TTTCGCAATGTTTAAATTTAAATTCCG 57.201 25.926 22.66 16.56 35.35 4.30
163 164 7.954447 TCGCAATGTTTAAATTTAAATTCCGG 58.046 30.769 22.66 13.98 35.35 5.14
164 165 6.680758 CGCAATGTTTAAATTTAAATTCCGGC 59.319 34.615 22.66 19.73 35.35 6.13
165 166 6.964370 GCAATGTTTAAATTTAAATTCCGGCC 59.036 34.615 22.66 11.03 35.35 6.13
166 167 6.895607 ATGTTTAAATTTAAATTCCGGCCG 57.104 33.333 22.66 21.04 35.35 6.13
167 168 4.626172 TGTTTAAATTTAAATTCCGGCCGC 59.374 37.500 22.85 9.86 35.35 6.53
168 169 4.451629 TTAAATTTAAATTCCGGCCGCA 57.548 36.364 22.85 0.00 0.00 5.69
169 170 3.320673 AAATTTAAATTCCGGCCGCAA 57.679 38.095 22.85 13.59 0.00 4.85
170 171 2.577449 ATTTAAATTCCGGCCGCAAG 57.423 45.000 22.85 6.58 0.00 4.01
171 172 9.456579 GTTTAAATTTAAATTCCGGCCGCAAGG 62.457 40.741 22.85 6.13 46.70 3.61
182 183 2.554272 CGCAAGGCACACGGTAAC 59.446 61.111 0.00 0.00 0.00 2.50
183 184 2.248135 CGCAAGGCACACGGTAACA 61.248 57.895 0.00 0.00 0.00 2.41
184 185 1.573829 CGCAAGGCACACGGTAACAT 61.574 55.000 0.00 0.00 0.00 2.71
185 186 0.109781 GCAAGGCACACGGTAACATG 60.110 55.000 0.00 0.00 0.00 3.21
186 187 0.109781 CAAGGCACACGGTAACATGC 60.110 55.000 0.00 0.00 38.50 4.06
187 188 0.536233 AAGGCACACGGTAACATGCA 60.536 50.000 0.00 0.00 40.39 3.96
188 189 0.536233 AGGCACACGGTAACATGCAA 60.536 50.000 0.00 0.00 40.39 4.08
189 190 0.312416 GGCACACGGTAACATGCAAA 59.688 50.000 0.00 0.00 40.39 3.68
190 191 1.404477 GCACACGGTAACATGCAAAC 58.596 50.000 0.00 0.00 38.93 2.93
191 192 1.669184 CACACGGTAACATGCAAACG 58.331 50.000 3.95 3.95 0.00 3.60
192 193 1.003331 CACACGGTAACATGCAAACGT 60.003 47.619 5.23 5.23 34.61 3.99
193 194 1.669184 CACGGTAACATGCAAACGTG 58.331 50.000 19.94 19.94 44.20 4.49
204 205 3.460114 CAAACGTGCATGTCACCTG 57.540 52.632 12.96 4.18 42.69 4.00
205 206 0.943673 CAAACGTGCATGTCACCTGA 59.056 50.000 12.96 0.00 42.69 3.86
206 207 1.536766 CAAACGTGCATGTCACCTGAT 59.463 47.619 12.96 0.00 42.69 2.90
207 208 1.442769 AACGTGCATGTCACCTGATC 58.557 50.000 12.96 0.00 42.69 2.92
208 209 0.610174 ACGTGCATGTCACCTGATCT 59.390 50.000 5.51 0.00 42.69 2.75
209 210 1.284657 CGTGCATGTCACCTGATCTC 58.715 55.000 12.62 0.00 42.69 2.75
210 211 1.134877 CGTGCATGTCACCTGATCTCT 60.135 52.381 12.62 0.00 42.69 3.10
211 212 2.277969 GTGCATGTCACCTGATCTCTG 58.722 52.381 8.54 0.00 39.79 3.35
212 213 1.904537 TGCATGTCACCTGATCTCTGT 59.095 47.619 0.00 0.00 0.00 3.41
213 214 2.093816 TGCATGTCACCTGATCTCTGTC 60.094 50.000 0.00 0.00 0.00 3.51
214 215 2.741228 GCATGTCACCTGATCTCTGTCC 60.741 54.545 0.00 0.00 0.00 4.02
215 216 1.561643 TGTCACCTGATCTCTGTCCC 58.438 55.000 0.00 0.00 0.00 4.46
216 217 1.203174 TGTCACCTGATCTCTGTCCCA 60.203 52.381 0.00 0.00 0.00 4.37
217 218 2.114616 GTCACCTGATCTCTGTCCCAT 58.885 52.381 0.00 0.00 0.00 4.00
218 219 2.102252 GTCACCTGATCTCTGTCCCATC 59.898 54.545 0.00 0.00 0.00 3.51
219 220 2.023598 TCACCTGATCTCTGTCCCATCT 60.024 50.000 0.00 0.00 0.00 2.90
220 221 2.364970 CACCTGATCTCTGTCCCATCTC 59.635 54.545 0.00 0.00 0.00 2.75
221 222 1.612950 CCTGATCTCTGTCCCATCTCG 59.387 57.143 0.00 0.00 0.00 4.04
222 223 2.305928 CTGATCTCTGTCCCATCTCGT 58.694 52.381 0.00 0.00 0.00 4.18
223 224 2.027385 TGATCTCTGTCCCATCTCGTG 58.973 52.381 0.00 0.00 0.00 4.35
224 225 2.302260 GATCTCTGTCCCATCTCGTGA 58.698 52.381 0.00 0.00 0.00 4.35
225 226 2.443958 TCTCTGTCCCATCTCGTGAT 57.556 50.000 0.00 0.00 0.00 3.06
226 227 2.302260 TCTCTGTCCCATCTCGTGATC 58.698 52.381 0.00 0.00 0.00 2.92
227 228 1.001924 CTCTGTCCCATCTCGTGATCG 60.002 57.143 0.00 0.00 38.55 3.69
228 229 0.596083 CTGTCCCATCTCGTGATCGC 60.596 60.000 0.00 0.00 36.96 4.58
229 230 1.037579 TGTCCCATCTCGTGATCGCT 61.038 55.000 4.48 0.00 36.96 4.93
230 231 0.318275 GTCCCATCTCGTGATCGCTC 60.318 60.000 4.48 0.00 36.96 5.03
231 232 0.751643 TCCCATCTCGTGATCGCTCA 60.752 55.000 4.48 0.00 36.96 4.26
232 233 0.596083 CCCATCTCGTGATCGCTCAC 60.596 60.000 9.34 9.34 46.89 3.51
239 240 1.225854 GTGATCGCTCACGCAAAGC 60.226 57.895 3.30 0.00 42.24 3.51
240 241 1.374631 TGATCGCTCACGCAAAGCT 60.375 52.632 3.25 0.00 39.84 3.74
241 242 0.950555 TGATCGCTCACGCAAAGCTT 60.951 50.000 0.00 0.00 39.84 3.74
242 243 0.247458 GATCGCTCACGCAAAGCTTC 60.247 55.000 0.00 0.00 39.84 3.86
243 244 0.950555 ATCGCTCACGCAAAGCTTCA 60.951 50.000 0.00 0.00 39.84 3.02
244 245 1.157257 TCGCTCACGCAAAGCTTCAA 61.157 50.000 0.00 0.00 39.84 2.69
245 246 0.723790 CGCTCACGCAAAGCTTCAAG 60.724 55.000 0.00 0.00 37.62 3.02
246 247 0.588252 GCTCACGCAAAGCTTCAAGA 59.412 50.000 0.00 0.00 36.80 3.02
247 248 1.198637 GCTCACGCAAAGCTTCAAGAT 59.801 47.619 0.00 0.00 36.80 2.40
248 249 2.351157 GCTCACGCAAAGCTTCAAGATT 60.351 45.455 0.00 0.00 36.80 2.40
249 250 3.486584 CTCACGCAAAGCTTCAAGATTC 58.513 45.455 0.00 0.00 0.00 2.52
250 251 2.226437 TCACGCAAAGCTTCAAGATTCC 59.774 45.455 0.00 0.00 0.00 3.01
251 252 2.030893 CACGCAAAGCTTCAAGATTCCA 60.031 45.455 0.00 0.00 0.00 3.53
252 253 2.821969 ACGCAAAGCTTCAAGATTCCAT 59.178 40.909 0.00 0.00 0.00 3.41
253 254 3.256631 ACGCAAAGCTTCAAGATTCCATT 59.743 39.130 0.00 0.00 0.00 3.16
254 255 4.458989 ACGCAAAGCTTCAAGATTCCATTA 59.541 37.500 0.00 0.00 0.00 1.90
255 256 4.795278 CGCAAAGCTTCAAGATTCCATTAC 59.205 41.667 0.00 0.00 0.00 1.89
256 257 5.619757 CGCAAAGCTTCAAGATTCCATTACA 60.620 40.000 0.00 0.00 0.00 2.41
257 258 6.335777 GCAAAGCTTCAAGATTCCATTACAT 58.664 36.000 0.00 0.00 0.00 2.29
258 259 7.483307 GCAAAGCTTCAAGATTCCATTACATA 58.517 34.615 0.00 0.00 0.00 2.29
259 260 8.139989 GCAAAGCTTCAAGATTCCATTACATAT 58.860 33.333 0.00 0.00 0.00 1.78
288 289 9.719355 AGATTACATTGTACAATATATCGCCAA 57.281 29.630 20.39 0.55 0.00 4.52
292 293 7.592938 ACATTGTACAATATATCGCCAATTGG 58.407 34.615 20.39 20.81 35.40 3.16
302 303 4.335214 CCAATTGGCGATGGGTGA 57.665 55.556 12.53 0.00 32.87 4.02
303 304 2.577490 CCAATTGGCGATGGGTGAA 58.423 52.632 12.53 0.00 32.87 3.18
304 305 0.173255 CCAATTGGCGATGGGTGAAC 59.827 55.000 12.53 0.00 32.87 3.18
305 306 0.887247 CAATTGGCGATGGGTGAACA 59.113 50.000 0.00 0.00 0.00 3.18
306 307 1.135315 CAATTGGCGATGGGTGAACAG 60.135 52.381 0.00 0.00 0.00 3.16
307 308 0.038166 ATTGGCGATGGGTGAACAGT 59.962 50.000 0.00 0.00 0.00 3.55
308 309 0.687920 TTGGCGATGGGTGAACAGTA 59.312 50.000 0.00 0.00 0.00 2.74
309 310 0.687920 TGGCGATGGGTGAACAGTAA 59.312 50.000 0.00 0.00 0.00 2.24
310 311 1.084289 GGCGATGGGTGAACAGTAAC 58.916 55.000 0.00 0.00 0.00 2.50
311 312 1.338769 GGCGATGGGTGAACAGTAACT 60.339 52.381 0.00 0.00 0.00 2.24
312 313 2.093869 GGCGATGGGTGAACAGTAACTA 60.094 50.000 0.00 0.00 0.00 2.24
313 314 3.187700 GCGATGGGTGAACAGTAACTAG 58.812 50.000 0.00 0.00 0.00 2.57
314 315 3.187700 CGATGGGTGAACAGTAACTAGC 58.812 50.000 0.00 0.00 0.00 3.42
315 316 3.119101 CGATGGGTGAACAGTAACTAGCT 60.119 47.826 0.00 0.00 0.00 3.32
316 317 4.097437 CGATGGGTGAACAGTAACTAGCTA 59.903 45.833 0.00 0.00 0.00 3.32
317 318 5.593010 GATGGGTGAACAGTAACTAGCTAG 58.407 45.833 19.44 19.44 0.00 3.42
318 319 4.413760 TGGGTGAACAGTAACTAGCTAGT 58.586 43.478 20.95 20.95 38.39 2.57
319 320 5.573219 TGGGTGAACAGTAACTAGCTAGTA 58.427 41.667 26.29 12.08 34.99 1.82
320 321 5.651139 TGGGTGAACAGTAACTAGCTAGTAG 59.349 44.000 26.29 17.71 34.99 2.57
321 322 5.450274 GGGTGAACAGTAACTAGCTAGTAGC 60.450 48.000 26.29 20.19 42.84 3.58
322 323 5.450274 GGTGAACAGTAACTAGCTAGTAGCC 60.450 48.000 26.29 16.19 43.77 3.93
323 324 5.357596 GTGAACAGTAACTAGCTAGTAGCCT 59.642 44.000 26.29 18.01 43.77 4.58
324 325 6.541641 GTGAACAGTAACTAGCTAGTAGCCTA 59.458 42.308 26.29 12.40 43.77 3.93
325 326 6.766944 TGAACAGTAACTAGCTAGTAGCCTAG 59.233 42.308 26.29 18.88 43.77 3.02
326 327 6.251255 ACAGTAACTAGCTAGTAGCCTAGT 57.749 41.667 26.29 19.44 43.77 2.57
327 328 7.372260 ACAGTAACTAGCTAGTAGCCTAGTA 57.628 40.000 26.29 10.61 43.77 1.82
328 329 7.444299 ACAGTAACTAGCTAGTAGCCTAGTAG 58.556 42.308 26.29 18.30 43.77 2.57
333 334 2.164338 GCTAGTAGCCTAGTAGCCAGG 58.836 57.143 22.72 0.00 46.91 4.45
334 335 2.489437 GCTAGTAGCCTAGTAGCCAGGT 60.489 54.545 22.72 0.00 46.91 4.00
335 336 3.244840 GCTAGTAGCCTAGTAGCCAGGTA 60.245 52.174 22.72 0.00 46.91 3.08
336 337 3.226682 AGTAGCCTAGTAGCCAGGTAC 57.773 52.381 0.00 0.00 35.45 3.34
337 338 2.512896 AGTAGCCTAGTAGCCAGGTACA 59.487 50.000 9.48 0.00 35.45 2.90
338 339 2.777459 AGCCTAGTAGCCAGGTACAT 57.223 50.000 9.48 0.00 35.45 2.29
339 340 3.897657 AGCCTAGTAGCCAGGTACATA 57.102 47.619 9.48 0.00 35.45 2.29
340 341 4.405756 AGCCTAGTAGCCAGGTACATAT 57.594 45.455 9.48 0.00 35.45 1.78
341 342 5.531753 AGCCTAGTAGCCAGGTACATATA 57.468 43.478 9.48 0.00 35.45 0.86
342 343 6.093617 AGCCTAGTAGCCAGGTACATATAT 57.906 41.667 9.48 0.00 35.45 0.86
343 344 7.222180 AGCCTAGTAGCCAGGTACATATATA 57.778 40.000 9.48 0.00 35.45 0.86
344 345 7.061688 AGCCTAGTAGCCAGGTACATATATAC 58.938 42.308 9.48 0.00 35.45 1.47
345 346 6.832384 GCCTAGTAGCCAGGTACATATATACA 59.168 42.308 9.48 0.00 35.45 2.29
346 347 7.201803 GCCTAGTAGCCAGGTACATATATACAC 60.202 44.444 9.48 0.00 35.45 2.90
347 348 6.754702 AGTAGCCAGGTACATATATACACG 57.245 41.667 9.48 0.00 0.00 4.49
348 349 6.479006 AGTAGCCAGGTACATATATACACGA 58.521 40.000 9.48 0.00 0.00 4.35
349 350 5.899120 AGCCAGGTACATATATACACGAG 57.101 43.478 0.00 0.00 0.00 4.18
350 351 5.567430 AGCCAGGTACATATATACACGAGA 58.433 41.667 0.00 0.00 0.00 4.04
351 352 5.415077 AGCCAGGTACATATATACACGAGAC 59.585 44.000 0.00 0.00 0.00 3.36
352 353 5.182570 GCCAGGTACATATATACACGAGACA 59.817 44.000 0.00 0.00 0.00 3.41
353 354 6.609533 CCAGGTACATATATACACGAGACAC 58.390 44.000 0.00 0.00 0.00 3.67
354 355 6.206048 CCAGGTACATATATACACGAGACACA 59.794 42.308 0.00 0.00 0.00 3.72
355 356 7.298854 CAGGTACATATATACACGAGACACAG 58.701 42.308 0.00 0.00 0.00 3.66
356 357 6.996879 AGGTACATATATACACGAGACACAGT 59.003 38.462 0.00 0.00 0.00 3.55
357 358 8.152898 AGGTACATATATACACGAGACACAGTA 58.847 37.037 0.00 0.00 0.00 2.74
358 359 8.441608 GGTACATATATACACGAGACACAGTAG 58.558 40.741 0.00 0.00 0.00 2.57
359 360 7.436430 ACATATATACACGAGACACAGTAGG 57.564 40.000 0.00 0.00 0.00 3.18
360 361 7.222161 ACATATATACACGAGACACAGTAGGA 58.778 38.462 0.00 0.00 0.00 2.94
361 362 7.718314 ACATATATACACGAGACACAGTAGGAA 59.282 37.037 0.00 0.00 0.00 3.36
362 363 4.966965 ATACACGAGACACAGTAGGAAG 57.033 45.455 0.00 0.00 0.00 3.46
363 364 2.860009 ACACGAGACACAGTAGGAAGA 58.140 47.619 0.00 0.00 0.00 2.87
364 365 3.220110 ACACGAGACACAGTAGGAAGAA 58.780 45.455 0.00 0.00 0.00 2.52
365 366 3.635373 ACACGAGACACAGTAGGAAGAAA 59.365 43.478 0.00 0.00 0.00 2.52
366 367 4.098960 ACACGAGACACAGTAGGAAGAAAA 59.901 41.667 0.00 0.00 0.00 2.29
367 368 5.221461 ACACGAGACACAGTAGGAAGAAAAT 60.221 40.000 0.00 0.00 0.00 1.82
368 369 5.119279 CACGAGACACAGTAGGAAGAAAATG 59.881 44.000 0.00 0.00 0.00 2.32
369 370 5.221461 ACGAGACACAGTAGGAAGAAAATGT 60.221 40.000 0.00 0.00 0.00 2.71
370 371 6.015688 ACGAGACACAGTAGGAAGAAAATGTA 60.016 38.462 0.00 0.00 0.00 2.29
371 372 6.528423 CGAGACACAGTAGGAAGAAAATGTAG 59.472 42.308 0.00 0.00 0.00 2.74
372 373 6.702329 AGACACAGTAGGAAGAAAATGTAGG 58.298 40.000 0.00 0.00 0.00 3.18
373 374 6.497259 AGACACAGTAGGAAGAAAATGTAGGA 59.503 38.462 0.00 0.00 0.00 2.94
374 375 7.181125 AGACACAGTAGGAAGAAAATGTAGGAT 59.819 37.037 0.00 0.00 0.00 3.24
375 376 8.375493 ACACAGTAGGAAGAAAATGTAGGATA 57.625 34.615 0.00 0.00 0.00 2.59
376 377 8.993424 ACACAGTAGGAAGAAAATGTAGGATAT 58.007 33.333 0.00 0.00 0.00 1.63
377 378 9.482627 CACAGTAGGAAGAAAATGTAGGATATC 57.517 37.037 0.00 0.00 0.00 1.63
378 379 9.213777 ACAGTAGGAAGAAAATGTAGGATATCA 57.786 33.333 4.83 0.00 0.00 2.15
379 380 9.482627 CAGTAGGAAGAAAATGTAGGATATCAC 57.517 37.037 4.83 0.00 0.00 3.06
380 381 9.440761 AGTAGGAAGAAAATGTAGGATATCACT 57.559 33.333 4.83 2.21 0.00 3.41
383 384 8.997734 AGGAAGAAAATGTAGGATATCACTTCT 58.002 33.333 4.83 0.00 33.19 2.85
384 385 9.267084 GGAAGAAAATGTAGGATATCACTTCTC 57.733 37.037 4.83 0.00 33.19 2.87
396 397 9.799106 AGGATATCACTTCTCTTTTTCTTTTCA 57.201 29.630 4.83 0.00 0.00 2.69
400 401 6.507023 TCACTTCTCTTTTTCTTTTCATGGC 58.493 36.000 0.00 0.00 0.00 4.40
401 402 5.693555 CACTTCTCTTTTTCTTTTCATGGCC 59.306 40.000 0.00 0.00 0.00 5.36
402 403 4.503741 TCTCTTTTTCTTTTCATGGCCG 57.496 40.909 0.00 0.00 0.00 6.13
403 404 3.888930 TCTCTTTTTCTTTTCATGGCCGT 59.111 39.130 0.00 0.00 0.00 5.68
404 405 5.067273 TCTCTTTTTCTTTTCATGGCCGTA 58.933 37.500 0.00 0.00 0.00 4.02
405 406 5.181245 TCTCTTTTTCTTTTCATGGCCGTAG 59.819 40.000 0.00 0.00 0.00 3.51
406 407 4.825085 TCTTTTTCTTTTCATGGCCGTAGT 59.175 37.500 0.00 0.00 0.00 2.73
407 408 4.497473 TTTTCTTTTCATGGCCGTAGTG 57.503 40.909 0.00 0.00 0.00 2.74
408 409 2.851263 TCTTTTCATGGCCGTAGTGT 57.149 45.000 0.00 0.00 0.00 3.55
409 410 3.965379 TCTTTTCATGGCCGTAGTGTA 57.035 42.857 0.00 0.00 0.00 2.90
410 411 4.274602 TCTTTTCATGGCCGTAGTGTAA 57.725 40.909 0.00 0.00 0.00 2.41
411 412 4.839121 TCTTTTCATGGCCGTAGTGTAAT 58.161 39.130 0.00 0.00 0.00 1.89
412 413 4.873827 TCTTTTCATGGCCGTAGTGTAATC 59.126 41.667 0.00 0.00 0.00 1.75
413 414 2.902705 TCATGGCCGTAGTGTAATCC 57.097 50.000 0.00 0.00 0.00 3.01
414 415 2.394632 TCATGGCCGTAGTGTAATCCT 58.605 47.619 0.00 0.00 0.00 3.24
415 416 3.568443 TCATGGCCGTAGTGTAATCCTA 58.432 45.455 0.00 0.00 0.00 2.94
416 417 4.157246 TCATGGCCGTAGTGTAATCCTAT 58.843 43.478 0.00 0.00 0.00 2.57
417 418 5.326900 TCATGGCCGTAGTGTAATCCTATA 58.673 41.667 0.00 0.00 0.00 1.31
418 419 5.955959 TCATGGCCGTAGTGTAATCCTATAT 59.044 40.000 0.00 0.00 0.00 0.86
419 420 6.439375 TCATGGCCGTAGTGTAATCCTATATT 59.561 38.462 0.00 0.00 0.00 1.28
420 421 6.276832 TGGCCGTAGTGTAATCCTATATTC 57.723 41.667 0.00 0.00 0.00 1.75
421 422 5.186409 TGGCCGTAGTGTAATCCTATATTCC 59.814 44.000 0.00 0.00 0.00 3.01
422 423 5.421374 GGCCGTAGTGTAATCCTATATTCCT 59.579 44.000 0.00 0.00 0.00 3.36
423 424 6.604795 GGCCGTAGTGTAATCCTATATTCCTA 59.395 42.308 0.00 0.00 0.00 2.94
424 425 7.287235 GGCCGTAGTGTAATCCTATATTCCTAT 59.713 40.741 0.00 0.00 0.00 2.57
425 426 8.136165 GCCGTAGTGTAATCCTATATTCCTATG 58.864 40.741 0.00 0.00 0.00 2.23
426 427 8.630917 CCGTAGTGTAATCCTATATTCCTATGG 58.369 40.741 0.00 0.00 0.00 2.74
427 428 8.136165 CGTAGTGTAATCCTATATTCCTATGGC 58.864 40.741 0.00 0.00 0.00 4.40
428 429 8.978472 GTAGTGTAATCCTATATTCCTATGGCA 58.022 37.037 0.00 0.00 0.00 4.92
429 430 8.083828 AGTGTAATCCTATATTCCTATGGCAG 57.916 38.462 0.00 0.00 0.00 4.85
467 468 2.998316 TTTTTGGTGCCCTTTCTTGG 57.002 45.000 0.00 0.00 0.00 3.61
468 469 2.166907 TTTTGGTGCCCTTTCTTGGA 57.833 45.000 0.00 0.00 0.00 3.53
469 470 2.397044 TTTGGTGCCCTTTCTTGGAT 57.603 45.000 0.00 0.00 0.00 3.41
470 471 2.397044 TTGGTGCCCTTTCTTGGATT 57.603 45.000 0.00 0.00 0.00 3.01
471 472 1.631405 TGGTGCCCTTTCTTGGATTG 58.369 50.000 0.00 0.00 0.00 2.67
472 473 1.133199 TGGTGCCCTTTCTTGGATTGT 60.133 47.619 0.00 0.00 0.00 2.71
473 474 2.109128 TGGTGCCCTTTCTTGGATTGTA 59.891 45.455 0.00 0.00 0.00 2.41
474 475 2.755103 GGTGCCCTTTCTTGGATTGTAG 59.245 50.000 0.00 0.00 0.00 2.74
475 476 3.421844 GTGCCCTTTCTTGGATTGTAGT 58.578 45.455 0.00 0.00 0.00 2.73
476 477 4.566907 GGTGCCCTTTCTTGGATTGTAGTA 60.567 45.833 0.00 0.00 0.00 1.82
477 478 4.636206 GTGCCCTTTCTTGGATTGTAGTAG 59.364 45.833 0.00 0.00 0.00 2.57
478 479 4.534500 TGCCCTTTCTTGGATTGTAGTAGA 59.466 41.667 0.00 0.00 0.00 2.59
479 480 5.013704 TGCCCTTTCTTGGATTGTAGTAGAA 59.986 40.000 0.00 0.00 0.00 2.10
480 481 5.944007 GCCCTTTCTTGGATTGTAGTAGAAA 59.056 40.000 0.00 0.00 34.64 2.52
481 482 6.094186 GCCCTTTCTTGGATTGTAGTAGAAAG 59.906 42.308 13.29 13.29 45.66 2.62
505 506 9.896645 AAGATTACAAGATGACAGTATGAATGT 57.103 29.630 0.00 0.00 39.69 2.71
506 507 9.322773 AGATTACAAGATGACAGTATGAATGTG 57.677 33.333 0.00 0.00 39.69 3.21
507 508 9.102757 GATTACAAGATGACAGTATGAATGTGT 57.897 33.333 0.00 0.00 39.69 3.72
508 509 6.732531 ACAAGATGACAGTATGAATGTGTG 57.267 37.500 0.00 0.00 39.69 3.82
509 510 5.122869 ACAAGATGACAGTATGAATGTGTGC 59.877 40.000 0.00 0.00 39.69 4.57
510 511 5.095145 AGATGACAGTATGAATGTGTGCT 57.905 39.130 0.00 0.00 39.69 4.40
511 512 5.494724 AGATGACAGTATGAATGTGTGCTT 58.505 37.500 0.00 0.00 39.69 3.91
512 513 5.583854 AGATGACAGTATGAATGTGTGCTTC 59.416 40.000 0.00 0.00 39.69 3.86
513 514 4.898320 TGACAGTATGAATGTGTGCTTCT 58.102 39.130 0.00 0.00 39.69 2.85
514 515 4.931601 TGACAGTATGAATGTGTGCTTCTC 59.068 41.667 0.00 0.00 39.69 2.87
515 516 5.157940 ACAGTATGAATGTGTGCTTCTCT 57.842 39.130 0.00 0.00 39.69 3.10
516 517 5.555017 ACAGTATGAATGTGTGCTTCTCTT 58.445 37.500 0.00 0.00 39.69 2.85
517 518 5.410746 ACAGTATGAATGTGTGCTTCTCTTG 59.589 40.000 0.00 0.00 39.69 3.02
518 519 5.410746 CAGTATGAATGTGTGCTTCTCTTGT 59.589 40.000 0.00 0.00 39.69 3.16
519 520 6.591448 CAGTATGAATGTGTGCTTCTCTTGTA 59.409 38.462 0.00 0.00 39.69 2.41
520 521 7.279536 CAGTATGAATGTGTGCTTCTCTTGTAT 59.720 37.037 0.00 0.00 39.69 2.29
521 522 7.826252 AGTATGAATGTGTGCTTCTCTTGTATT 59.174 33.333 0.00 0.00 0.00 1.89
522 523 6.882610 TGAATGTGTGCTTCTCTTGTATTT 57.117 33.333 0.00 0.00 0.00 1.40
523 524 6.902341 TGAATGTGTGCTTCTCTTGTATTTC 58.098 36.000 0.00 0.00 0.00 2.17
524 525 6.486320 TGAATGTGTGCTTCTCTTGTATTTCA 59.514 34.615 0.00 0.00 0.00 2.69
525 526 7.175467 TGAATGTGTGCTTCTCTTGTATTTCAT 59.825 33.333 0.00 0.00 0.00 2.57
526 527 6.486253 TGTGTGCTTCTCTTGTATTTCATC 57.514 37.500 0.00 0.00 0.00 2.92
527 528 5.412594 TGTGTGCTTCTCTTGTATTTCATCC 59.587 40.000 0.00 0.00 0.00 3.51
528 529 4.631377 TGTGCTTCTCTTGTATTTCATCCG 59.369 41.667 0.00 0.00 0.00 4.18
529 530 4.870426 GTGCTTCTCTTGTATTTCATCCGA 59.130 41.667 0.00 0.00 0.00 4.55
530 531 5.351465 GTGCTTCTCTTGTATTTCATCCGAA 59.649 40.000 0.00 0.00 0.00 4.30
531 532 5.937540 TGCTTCTCTTGTATTTCATCCGAAA 59.062 36.000 0.00 0.00 44.99 3.46
532 533 6.128282 TGCTTCTCTTGTATTTCATCCGAAAC 60.128 38.462 0.00 0.00 43.75 2.78
533 534 6.675728 GCTTCTCTTGTATTTCATCCGAAACC 60.676 42.308 0.00 0.00 43.75 3.27
534 535 5.800296 TCTCTTGTATTTCATCCGAAACCA 58.200 37.500 0.00 0.00 43.75 3.67
535 536 5.874810 TCTCTTGTATTTCATCCGAAACCAG 59.125 40.000 0.00 0.00 43.75 4.00
536 537 4.941263 TCTTGTATTTCATCCGAAACCAGG 59.059 41.667 0.00 0.00 43.75 4.45
537 538 4.295141 TGTATTTCATCCGAAACCAGGT 57.705 40.909 0.00 0.00 43.75 4.00
538 539 4.658063 TGTATTTCATCCGAAACCAGGTT 58.342 39.130 0.00 0.00 43.75 3.50
539 540 4.698304 TGTATTTCATCCGAAACCAGGTTC 59.302 41.667 4.93 0.00 43.75 3.62
540 541 2.194201 TTCATCCGAAACCAGGTTCC 57.806 50.000 4.93 0.00 0.00 3.62
541 542 1.060729 TCATCCGAAACCAGGTTCCA 58.939 50.000 4.93 0.00 0.00 3.53
542 543 1.003118 TCATCCGAAACCAGGTTCCAG 59.997 52.381 4.93 0.00 0.00 3.86
543 544 1.064825 ATCCGAAACCAGGTTCCAGT 58.935 50.000 4.93 0.00 0.00 4.00
544 545 0.107831 TCCGAAACCAGGTTCCAGTG 59.892 55.000 4.93 0.00 0.00 3.66
545 546 0.107831 CCGAAACCAGGTTCCAGTGA 59.892 55.000 4.93 0.00 0.00 3.41
546 547 1.226746 CGAAACCAGGTTCCAGTGAC 58.773 55.000 4.93 0.00 0.00 3.67
547 548 1.226746 GAAACCAGGTTCCAGTGACG 58.773 55.000 4.93 0.00 0.00 4.35
548 549 0.544697 AAACCAGGTTCCAGTGACGT 59.455 50.000 4.93 0.00 0.00 4.34
549 550 0.544697 AACCAGGTTCCAGTGACGTT 59.455 50.000 0.00 0.00 0.00 3.99
550 551 1.416243 ACCAGGTTCCAGTGACGTTA 58.584 50.000 0.00 0.00 0.00 3.18
551 552 1.764134 ACCAGGTTCCAGTGACGTTAA 59.236 47.619 0.00 0.00 0.00 2.01
552 553 2.370849 ACCAGGTTCCAGTGACGTTAAT 59.629 45.455 0.00 0.00 0.00 1.40
553 554 3.181448 ACCAGGTTCCAGTGACGTTAATT 60.181 43.478 0.00 0.00 0.00 1.40
554 555 3.818773 CCAGGTTCCAGTGACGTTAATTT 59.181 43.478 0.00 0.00 0.00 1.82
555 556 4.320202 CCAGGTTCCAGTGACGTTAATTTG 60.320 45.833 0.00 0.00 0.00 2.32
556 557 3.252458 AGGTTCCAGTGACGTTAATTTGC 59.748 43.478 0.00 0.00 0.00 3.68
557 558 3.003897 GGTTCCAGTGACGTTAATTTGCA 59.996 43.478 0.00 0.00 0.00 4.08
558 559 4.320935 GGTTCCAGTGACGTTAATTTGCAT 60.321 41.667 0.00 0.00 0.00 3.96
559 560 5.219633 GTTCCAGTGACGTTAATTTGCATT 58.780 37.500 0.00 0.00 0.00 3.56
560 561 5.446143 TCCAGTGACGTTAATTTGCATTT 57.554 34.783 0.00 0.00 0.00 2.32
561 562 6.561737 TCCAGTGACGTTAATTTGCATTTA 57.438 33.333 0.00 0.00 0.00 1.40
562 563 6.971602 TCCAGTGACGTTAATTTGCATTTAA 58.028 32.000 0.00 0.00 0.00 1.52
563 564 6.858993 TCCAGTGACGTTAATTTGCATTTAAC 59.141 34.615 16.92 16.92 36.59 2.01
564 565 6.638873 CCAGTGACGTTAATTTGCATTTAACA 59.361 34.615 22.47 9.08 38.75 2.41
565 566 7.328249 CCAGTGACGTTAATTTGCATTTAACAT 59.672 33.333 22.47 13.84 38.75 2.71
566 567 8.155294 CAGTGACGTTAATTTGCATTTAACATG 58.845 33.333 22.47 14.43 38.75 3.21
567 568 6.947680 GTGACGTTAATTTGCATTTAACATGC 59.052 34.615 22.47 12.76 44.76 4.06
572 573 3.298583 GCATTTAACATGCGGCGC 58.701 55.556 27.44 27.44 35.17 6.53
573 574 1.515952 GCATTTAACATGCGGCGCA 60.516 52.632 38.09 38.09 44.86 6.09
574 575 1.075425 GCATTTAACATGCGGCGCAA 61.075 50.000 39.46 21.97 43.62 4.85
575 576 0.915904 CATTTAACATGCGGCGCAAG 59.084 50.000 39.46 35.55 43.62 4.01
576 577 0.179140 ATTTAACATGCGGCGCAAGG 60.179 50.000 39.46 32.71 43.62 3.61
625 626 2.960688 GCCTCCGAAACCAGAGCCT 61.961 63.158 0.00 0.00 0.00 4.58
860 933 4.083537 GCAAAACATGTCGGTGAGTTGATA 60.084 41.667 0.00 0.00 0.00 2.15
869 942 5.655090 TGTCGGTGAGTTGATAAAGATCCTA 59.345 40.000 0.00 0.00 0.00 2.94
893 966 6.822073 TGTGAATTTACGTCTATGGATTCG 57.178 37.500 0.00 0.00 0.00 3.34
896 969 5.981315 TGAATTTACGTCTATGGATTCGTCC 59.019 40.000 0.00 0.00 37.66 4.79
988 1067 8.178964 GCAAACAAATAATGTGATGATGCATTT 58.821 29.630 0.00 0.00 42.99 2.32
1004 1083 6.990939 TGATGCATTTGAAACAAGAAAATGGA 59.009 30.769 0.00 6.72 42.99 3.41
1110 1189 1.229359 CAGCAAGGCCAGGGATGAT 59.771 57.895 5.01 0.00 0.00 2.45
1218 1297 1.151450 CAACTCCAGGCCCAACACT 59.849 57.895 0.00 0.00 0.00 3.55
1344 1449 2.438075 GCAGCCTTGAGCCAGGAG 60.438 66.667 0.00 0.00 45.47 3.69
1359 1464 2.977580 CCAGGAGGAGGATGATGATGAA 59.022 50.000 0.00 0.00 36.89 2.57
1364 1469 2.638855 AGGAGGATGATGATGAAGAGGC 59.361 50.000 0.00 0.00 0.00 4.70
1466 1574 9.821158 GTTTATAAACAAACGTACTACTATCGC 57.179 33.333 20.95 0.00 38.74 4.58
1483 1591 4.829064 ATCGCACATACACAAACACTTT 57.171 36.364 0.00 0.00 0.00 2.66
1495 1603 1.106944 AACACTTTGCCACTTCGGGG 61.107 55.000 0.00 0.00 34.06 5.73
1496 1604 1.228124 CACTTTGCCACTTCGGGGA 60.228 57.895 0.00 0.00 34.06 4.81
1497 1605 0.609131 CACTTTGCCACTTCGGGGAT 60.609 55.000 0.00 0.00 34.06 3.85
1498 1606 0.609131 ACTTTGCCACTTCGGGGATG 60.609 55.000 0.00 0.00 34.06 3.51
1499 1607 0.322456 CTTTGCCACTTCGGGGATGA 60.322 55.000 0.00 0.00 34.06 2.92
1526 1634 6.036470 TGAGATGAGACGATGTTGATGTAAC 58.964 40.000 0.00 0.00 39.80 2.50
1576 1685 2.321213 GGCGTGATGTATGGCTTCC 58.679 57.895 0.00 0.00 37.84 3.46
1577 1686 1.498865 GGCGTGATGTATGGCTTCCG 61.499 60.000 0.00 0.00 37.84 4.30
1578 1687 1.934463 CGTGATGTATGGCTTCCGC 59.066 57.895 0.00 0.00 0.00 5.54
1579 1688 1.821241 CGTGATGTATGGCTTCCGCG 61.821 60.000 0.00 0.00 36.88 6.46
1580 1689 0.810031 GTGATGTATGGCTTCCGCGT 60.810 55.000 4.92 0.00 36.88 6.01
1637 1755 4.040829 TCTTTCAGATGTTCTCAGCCTCAA 59.959 41.667 0.00 0.00 0.00 3.02
1751 1869 3.925630 ATGTGGAACCTGCCCTGCG 62.926 63.158 0.00 0.00 34.36 5.18
1766 1884 1.002366 CTGCGCAACTACCAGATGAC 58.998 55.000 13.05 0.00 0.00 3.06
1775 1896 3.034635 ACTACCAGATGACAGGGCTAAG 58.965 50.000 0.00 0.00 0.00 2.18
1818 1940 5.041287 TGCATCACTAGCTGTTAATCGTAC 58.959 41.667 0.00 0.00 0.00 3.67
1835 3088 2.032549 CGTACGGGTGTAGAGAATACCG 60.033 54.545 7.57 0.00 46.16 4.02
1840 3093 2.364324 GGGTGTAGAGAATACCGCATCA 59.636 50.000 0.00 0.00 40.21 3.07
1841 3094 3.381949 GGTGTAGAGAATACCGCATCAC 58.618 50.000 0.00 0.00 28.66 3.06
1863 3116 2.009774 GTCGCAGCTGTCCAATAACAT 58.990 47.619 16.64 0.00 0.00 2.71
1929 3183 2.373335 TAGCAAGGCTCAAACCCAAA 57.627 45.000 0.00 0.00 40.44 3.28
1951 3205 4.012374 ACATTCCACATTCATGTCTGTCC 58.988 43.478 0.00 0.00 39.39 4.02
1958 3212 3.686241 ACATTCATGTCTGTCCATCGTTG 59.314 43.478 0.00 0.00 35.87 4.10
2225 3480 0.663269 GCGCGATCGTGGTGATGATA 60.663 55.000 28.23 0.00 37.47 2.15
2261 3516 0.619255 TGGGCCCGAACTCCATCTTA 60.619 55.000 19.37 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.467384 ATGCTCATCTCTTCCCCACG 59.533 55.000 0.00 0.00 0.00 4.94
1 2 1.767681 AGATGCTCATCTCTTCCCCAC 59.232 52.381 6.56 0.00 44.37 4.61
2 3 2.187239 AGATGCTCATCTCTTCCCCA 57.813 50.000 6.56 0.00 44.37 4.96
11 12 3.321396 TCTGTCATGAGGAGATGCTCATC 59.679 47.826 13.25 4.75 41.03 2.92
12 13 3.306613 TCTGTCATGAGGAGATGCTCAT 58.693 45.455 10.68 10.68 40.54 2.90
13 14 2.743553 TCTGTCATGAGGAGATGCTCA 58.256 47.619 6.51 6.51 31.08 4.26
14 15 4.339872 AATCTGTCATGAGGAGATGCTC 57.660 45.455 15.02 0.00 0.00 4.26
15 16 4.409574 AGAAATCTGTCATGAGGAGATGCT 59.590 41.667 15.02 12.86 0.00 3.79
16 17 4.706035 AGAAATCTGTCATGAGGAGATGC 58.294 43.478 15.02 11.36 0.00 3.91
17 18 6.164417 AGAGAAATCTGTCATGAGGAGATG 57.836 41.667 15.02 0.00 0.00 2.90
18 19 6.811634 AAGAGAAATCTGTCATGAGGAGAT 57.188 37.500 10.26 10.26 0.00 2.75
19 20 6.617782 AAAGAGAAATCTGTCATGAGGAGA 57.382 37.500 0.00 0.65 0.00 3.71
20 21 7.684937 AAAAAGAGAAATCTGTCATGAGGAG 57.315 36.000 0.00 0.00 0.00 3.69
47 48 9.958234 TCAAAATTCGAAACATACATCAAGAAA 57.042 25.926 0.00 0.00 0.00 2.52
49 50 9.773328 GATCAAAATTCGAAACATACATCAAGA 57.227 29.630 0.00 0.00 0.00 3.02
50 51 9.778993 AGATCAAAATTCGAAACATACATCAAG 57.221 29.630 0.00 0.00 0.00 3.02
51 52 9.558648 CAGATCAAAATTCGAAACATACATCAA 57.441 29.630 0.00 0.00 0.00 2.57
52 53 8.945057 TCAGATCAAAATTCGAAACATACATCA 58.055 29.630 0.00 0.00 0.00 3.07
53 54 9.773328 TTCAGATCAAAATTCGAAACATACATC 57.227 29.630 0.00 0.31 0.00 3.06
81 82 9.930158 AGCACATATTAAGATAACCCCTAAAAA 57.070 29.630 0.00 0.00 0.00 1.94
82 83 9.349713 CAGCACATATTAAGATAACCCCTAAAA 57.650 33.333 0.00 0.00 0.00 1.52
83 84 8.499406 ACAGCACATATTAAGATAACCCCTAAA 58.501 33.333 0.00 0.00 0.00 1.85
84 85 7.936847 CACAGCACATATTAAGATAACCCCTAA 59.063 37.037 0.00 0.00 0.00 2.69
85 86 7.291416 TCACAGCACATATTAAGATAACCCCTA 59.709 37.037 0.00 0.00 0.00 3.53
86 87 6.101150 TCACAGCACATATTAAGATAACCCCT 59.899 38.462 0.00 0.00 0.00 4.79
87 88 6.296026 TCACAGCACATATTAAGATAACCCC 58.704 40.000 0.00 0.00 0.00 4.95
88 89 7.282224 TGTTCACAGCACATATTAAGATAACCC 59.718 37.037 0.00 0.00 0.00 4.11
89 90 8.208718 TGTTCACAGCACATATTAAGATAACC 57.791 34.615 0.00 0.00 0.00 2.85
90 91 9.655769 CATGTTCACAGCACATATTAAGATAAC 57.344 33.333 0.00 0.00 32.88 1.89
91 92 8.344831 GCATGTTCACAGCACATATTAAGATAA 58.655 33.333 0.00 0.00 32.88 1.75
92 93 7.716560 AGCATGTTCACAGCACATATTAAGATA 59.283 33.333 0.00 0.00 32.88 1.98
93 94 6.544931 AGCATGTTCACAGCACATATTAAGAT 59.455 34.615 0.00 0.00 32.88 2.40
94 95 5.882000 AGCATGTTCACAGCACATATTAAGA 59.118 36.000 0.00 0.00 32.88 2.10
95 96 6.127810 AGCATGTTCACAGCACATATTAAG 57.872 37.500 0.00 0.00 32.88 1.85
96 97 6.150809 TCAAGCATGTTCACAGCACATATTAA 59.849 34.615 0.00 0.00 32.88 1.40
97 98 5.647225 TCAAGCATGTTCACAGCACATATTA 59.353 36.000 0.00 0.00 32.88 0.98
98 99 4.460034 TCAAGCATGTTCACAGCACATATT 59.540 37.500 0.00 0.00 32.88 1.28
99 100 4.011698 TCAAGCATGTTCACAGCACATAT 58.988 39.130 0.00 0.00 32.88 1.78
100 101 3.410508 TCAAGCATGTTCACAGCACATA 58.589 40.909 0.00 0.00 32.88 2.29
101 102 2.232399 TCAAGCATGTTCACAGCACAT 58.768 42.857 0.00 0.00 35.10 3.21
102 103 1.677942 TCAAGCATGTTCACAGCACA 58.322 45.000 0.00 0.00 0.00 4.57
103 104 3.293311 AATCAAGCATGTTCACAGCAC 57.707 42.857 0.00 0.00 0.00 4.40
104 105 4.325028 AAAATCAAGCATGTTCACAGCA 57.675 36.364 0.00 0.00 0.00 4.41
136 137 9.798885 CGGAATTTAAATTTAAACATTGCGAAA 57.201 25.926 28.38 10.07 38.01 3.46
137 138 8.436200 CCGGAATTTAAATTTAAACATTGCGAA 58.564 29.630 31.09 11.73 38.01 4.70
138 139 7.412020 GCCGGAATTTAAATTTAAACATTGCGA 60.412 33.333 31.09 12.26 38.01 5.10
139 140 6.680758 GCCGGAATTTAAATTTAAACATTGCG 59.319 34.615 26.89 26.89 36.79 4.85
140 141 6.964370 GGCCGGAATTTAAATTTAAACATTGC 59.036 34.615 22.35 17.59 35.65 3.56
141 142 7.176741 CGGCCGGAATTTAAATTTAAACATTG 58.823 34.615 22.35 13.85 35.65 2.82
142 143 6.183360 GCGGCCGGAATTTAAATTTAAACATT 60.183 34.615 29.38 15.07 35.65 2.71
143 144 5.292345 GCGGCCGGAATTTAAATTTAAACAT 59.708 36.000 29.38 15.44 35.65 2.71
144 145 4.626172 GCGGCCGGAATTTAAATTTAAACA 59.374 37.500 29.38 5.29 35.65 2.83
145 146 4.626172 TGCGGCCGGAATTTAAATTTAAAC 59.374 37.500 29.38 12.52 35.65 2.01
146 147 4.817517 TGCGGCCGGAATTTAAATTTAAA 58.182 34.783 29.38 22.20 37.08 1.52
147 148 4.451629 TGCGGCCGGAATTTAAATTTAA 57.548 36.364 29.38 6.54 0.00 1.52
148 149 4.425520 CTTGCGGCCGGAATTTAAATTTA 58.574 39.130 32.76 6.34 0.00 1.40
149 150 3.258228 CTTGCGGCCGGAATTTAAATTT 58.742 40.909 32.76 0.00 0.00 1.82
150 151 2.418060 CCTTGCGGCCGGAATTTAAATT 60.418 45.455 32.76 13.24 0.00 1.82
151 152 1.136110 CCTTGCGGCCGGAATTTAAAT 59.864 47.619 32.76 0.00 0.00 1.40
152 153 0.528470 CCTTGCGGCCGGAATTTAAA 59.472 50.000 32.76 9.68 0.00 1.52
153 154 2.185238 CCTTGCGGCCGGAATTTAA 58.815 52.632 32.76 10.52 0.00 1.52
154 155 3.912614 CCTTGCGGCCGGAATTTA 58.087 55.556 32.76 10.95 0.00 1.40
165 166 1.573829 ATGTTACCGTGTGCCTTGCG 61.574 55.000 0.00 0.00 0.00 4.85
166 167 0.109781 CATGTTACCGTGTGCCTTGC 60.110 55.000 0.00 0.00 0.00 4.01
167 168 0.109781 GCATGTTACCGTGTGCCTTG 60.110 55.000 0.00 0.00 0.00 3.61
168 169 0.536233 TGCATGTTACCGTGTGCCTT 60.536 50.000 0.00 0.00 36.79 4.35
169 170 0.536233 TTGCATGTTACCGTGTGCCT 60.536 50.000 0.00 0.00 36.79 4.75
170 171 0.312416 TTTGCATGTTACCGTGTGCC 59.688 50.000 0.00 0.00 36.79 5.01
171 172 1.404477 GTTTGCATGTTACCGTGTGC 58.596 50.000 0.00 0.00 38.05 4.57
172 173 1.003331 ACGTTTGCATGTTACCGTGTG 60.003 47.619 0.00 0.00 0.00 3.82
173 174 1.003331 CACGTTTGCATGTTACCGTGT 60.003 47.619 16.54 0.00 40.37 4.49
174 175 1.669184 CACGTTTGCATGTTACCGTG 58.331 50.000 12.97 12.97 39.51 4.94
191 192 2.277969 CAGAGATCAGGTGACATGCAC 58.722 52.381 10.63 10.63 46.98 4.57
192 193 1.904537 ACAGAGATCAGGTGACATGCA 59.095 47.619 0.00 0.00 0.00 3.96
193 194 2.548875 GACAGAGATCAGGTGACATGC 58.451 52.381 0.00 0.00 0.00 4.06
194 195 2.158986 GGGACAGAGATCAGGTGACATG 60.159 54.545 0.00 0.00 0.00 3.21
195 196 2.114616 GGGACAGAGATCAGGTGACAT 58.885 52.381 0.00 0.00 0.00 3.06
196 197 1.203174 TGGGACAGAGATCAGGTGACA 60.203 52.381 0.00 0.00 0.00 3.58
197 198 1.561643 TGGGACAGAGATCAGGTGAC 58.438 55.000 0.00 0.00 0.00 3.67
204 205 6.380960 CGATCACGAGATGGGACAGAGATC 62.381 54.167 0.00 0.00 42.30 2.75
205 206 4.611289 CGATCACGAGATGGGACAGAGAT 61.611 52.174 0.00 0.00 42.30 2.75
206 207 3.323922 CGATCACGAGATGGGACAGAGA 61.324 54.545 0.00 0.00 42.30 3.10
207 208 1.001924 CGATCACGAGATGGGACAGAG 60.002 57.143 0.00 0.00 42.30 3.35
208 209 1.025041 CGATCACGAGATGGGACAGA 58.975 55.000 0.00 0.00 42.30 3.41
209 210 0.596083 GCGATCACGAGATGGGACAG 60.596 60.000 0.00 0.00 42.30 3.51
210 211 1.037579 AGCGATCACGAGATGGGACA 61.038 55.000 0.00 0.00 43.03 4.02
211 212 0.318275 GAGCGATCACGAGATGGGAC 60.318 60.000 0.00 0.00 42.66 4.46
212 213 0.751643 TGAGCGATCACGAGATGGGA 60.752 55.000 0.00 0.00 42.66 4.37
213 214 0.596083 GTGAGCGATCACGAGATGGG 60.596 60.000 19.10 0.00 42.66 4.00
214 215 2.878743 GTGAGCGATCACGAGATGG 58.121 57.895 19.10 0.00 42.66 3.51
228 229 3.486584 GAATCTTGAAGCTTTGCGTGAG 58.513 45.455 0.00 0.00 0.00 3.51
229 230 2.226437 GGAATCTTGAAGCTTTGCGTGA 59.774 45.455 0.00 0.00 0.00 4.35
230 231 2.030893 TGGAATCTTGAAGCTTTGCGTG 60.031 45.455 0.00 0.00 0.00 5.34
231 232 2.229792 TGGAATCTTGAAGCTTTGCGT 58.770 42.857 0.00 0.00 0.00 5.24
232 233 2.995466 TGGAATCTTGAAGCTTTGCG 57.005 45.000 0.00 0.00 0.00 4.85
233 234 5.713025 TGTAATGGAATCTTGAAGCTTTGC 58.287 37.500 0.00 0.00 0.00 3.68
262 263 9.719355 TTGGCGATATATTGTACAATGTAATCT 57.281 29.630 27.62 12.72 30.16 2.40
266 267 8.726068 CCAATTGGCGATATATTGTACAATGTA 58.274 33.333 27.62 24.90 32.50 2.29
267 268 7.592938 CCAATTGGCGATATATTGTACAATGT 58.407 34.615 27.62 23.67 32.50 2.71
285 286 0.173255 GTTCACCCATCGCCAATTGG 59.827 55.000 20.81 20.81 38.53 3.16
286 287 0.887247 TGTTCACCCATCGCCAATTG 59.113 50.000 0.00 0.00 0.00 2.32
287 288 1.176527 CTGTTCACCCATCGCCAATT 58.823 50.000 0.00 0.00 0.00 2.32
288 289 0.038166 ACTGTTCACCCATCGCCAAT 59.962 50.000 0.00 0.00 0.00 3.16
289 290 0.687920 TACTGTTCACCCATCGCCAA 59.312 50.000 0.00 0.00 0.00 4.52
290 291 0.687920 TTACTGTTCACCCATCGCCA 59.312 50.000 0.00 0.00 0.00 5.69
291 292 1.084289 GTTACTGTTCACCCATCGCC 58.916 55.000 0.00 0.00 0.00 5.54
292 293 2.094762 AGTTACTGTTCACCCATCGC 57.905 50.000 0.00 0.00 0.00 4.58
293 294 3.119101 AGCTAGTTACTGTTCACCCATCG 60.119 47.826 0.00 0.00 0.00 3.84
294 295 4.473477 AGCTAGTTACTGTTCACCCATC 57.527 45.455 0.00 0.00 0.00 3.51
295 296 5.024118 ACTAGCTAGTTACTGTTCACCCAT 58.976 41.667 20.95 0.00 31.13 4.00
296 297 4.413760 ACTAGCTAGTTACTGTTCACCCA 58.586 43.478 20.95 0.00 31.13 4.51
297 298 5.450274 GCTACTAGCTAGTTACTGTTCACCC 60.450 48.000 30.40 0.00 38.45 4.61
298 299 5.450274 GGCTACTAGCTAGTTACTGTTCACC 60.450 48.000 30.40 14.51 41.99 4.02
299 300 5.357596 AGGCTACTAGCTAGTTACTGTTCAC 59.642 44.000 30.40 11.29 41.99 3.18
300 301 5.507637 AGGCTACTAGCTAGTTACTGTTCA 58.492 41.667 30.40 9.91 41.99 3.18
301 302 7.193377 CTAGGCTACTAGCTAGTTACTGTTC 57.807 44.000 30.40 13.44 41.99 3.18
315 316 3.718434 TGTACCTGGCTACTAGGCTACTA 59.282 47.826 10.75 0.00 41.96 1.82
316 317 2.512896 TGTACCTGGCTACTAGGCTACT 59.487 50.000 10.75 0.00 41.96 2.57
317 318 2.941480 TGTACCTGGCTACTAGGCTAC 58.059 52.381 10.75 6.03 41.96 3.58
318 319 3.897657 ATGTACCTGGCTACTAGGCTA 57.102 47.619 10.75 0.00 41.96 3.93
319 320 2.777459 ATGTACCTGGCTACTAGGCT 57.223 50.000 10.75 0.00 41.96 4.58
320 321 6.832384 TGTATATATGTACCTGGCTACTAGGC 59.168 42.308 7.12 2.59 41.77 3.93
321 322 7.012138 CGTGTATATATGTACCTGGCTACTAGG 59.988 44.444 7.12 0.00 41.22 3.02
322 323 7.767659 TCGTGTATATATGTACCTGGCTACTAG 59.232 40.741 7.12 0.00 0.00 2.57
323 324 7.623630 TCGTGTATATATGTACCTGGCTACTA 58.376 38.462 7.12 0.00 0.00 1.82
324 325 6.479006 TCGTGTATATATGTACCTGGCTACT 58.521 40.000 7.12 0.00 0.00 2.57
325 326 6.596888 TCTCGTGTATATATGTACCTGGCTAC 59.403 42.308 7.12 0.00 0.00 3.58
326 327 6.596888 GTCTCGTGTATATATGTACCTGGCTA 59.403 42.308 7.12 0.00 0.00 3.93
327 328 5.415077 GTCTCGTGTATATATGTACCTGGCT 59.585 44.000 7.12 0.00 0.00 4.75
328 329 5.182570 TGTCTCGTGTATATATGTACCTGGC 59.817 44.000 7.12 0.00 0.00 4.85
329 330 6.206048 TGTGTCTCGTGTATATATGTACCTGG 59.794 42.308 7.12 0.00 0.00 4.45
330 331 7.041303 ACTGTGTCTCGTGTATATATGTACCTG 60.041 40.741 7.12 0.60 0.00 4.00
331 332 6.996879 ACTGTGTCTCGTGTATATATGTACCT 59.003 38.462 7.12 0.00 0.00 3.08
332 333 7.199541 ACTGTGTCTCGTGTATATATGTACC 57.800 40.000 7.12 0.00 0.00 3.34
333 334 8.441608 CCTACTGTGTCTCGTGTATATATGTAC 58.558 40.741 2.82 2.82 0.00 2.90
334 335 8.370182 TCCTACTGTGTCTCGTGTATATATGTA 58.630 37.037 0.00 0.00 0.00 2.29
335 336 7.222161 TCCTACTGTGTCTCGTGTATATATGT 58.778 38.462 0.00 0.00 0.00 2.29
336 337 7.668525 TCCTACTGTGTCTCGTGTATATATG 57.331 40.000 0.00 0.00 0.00 1.78
337 338 8.155510 TCTTCCTACTGTGTCTCGTGTATATAT 58.844 37.037 0.00 0.00 0.00 0.86
338 339 7.503549 TCTTCCTACTGTGTCTCGTGTATATA 58.496 38.462 0.00 0.00 0.00 0.86
339 340 6.354938 TCTTCCTACTGTGTCTCGTGTATAT 58.645 40.000 0.00 0.00 0.00 0.86
340 341 5.737860 TCTTCCTACTGTGTCTCGTGTATA 58.262 41.667 0.00 0.00 0.00 1.47
341 342 4.586884 TCTTCCTACTGTGTCTCGTGTAT 58.413 43.478 0.00 0.00 0.00 2.29
342 343 4.011966 TCTTCCTACTGTGTCTCGTGTA 57.988 45.455 0.00 0.00 0.00 2.90
343 344 2.860009 TCTTCCTACTGTGTCTCGTGT 58.140 47.619 0.00 0.00 0.00 4.49
344 345 3.917329 TTCTTCCTACTGTGTCTCGTG 57.083 47.619 0.00 0.00 0.00 4.35
345 346 4.931661 TTTTCTTCCTACTGTGTCTCGT 57.068 40.909 0.00 0.00 0.00 4.18
346 347 5.230942 ACATTTTCTTCCTACTGTGTCTCG 58.769 41.667 0.00 0.00 0.00 4.04
347 348 6.814146 CCTACATTTTCTTCCTACTGTGTCTC 59.186 42.308 0.00 0.00 0.00 3.36
348 349 6.497259 TCCTACATTTTCTTCCTACTGTGTCT 59.503 38.462 0.00 0.00 0.00 3.41
349 350 6.698380 TCCTACATTTTCTTCCTACTGTGTC 58.302 40.000 0.00 0.00 0.00 3.67
350 351 6.681729 TCCTACATTTTCTTCCTACTGTGT 57.318 37.500 0.00 0.00 0.00 3.72
351 352 9.482627 GATATCCTACATTTTCTTCCTACTGTG 57.517 37.037 0.00 0.00 0.00 3.66
352 353 9.213777 TGATATCCTACATTTTCTTCCTACTGT 57.786 33.333 0.00 0.00 0.00 3.55
353 354 9.482627 GTGATATCCTACATTTTCTTCCTACTG 57.517 37.037 0.00 0.00 0.00 2.74
354 355 9.440761 AGTGATATCCTACATTTTCTTCCTACT 57.559 33.333 0.00 0.00 0.00 2.57
357 358 8.997734 AGAAGTGATATCCTACATTTTCTTCCT 58.002 33.333 0.00 0.00 0.00 3.36
358 359 9.267084 GAGAAGTGATATCCTACATTTTCTTCC 57.733 37.037 0.00 0.00 0.00 3.46
370 371 9.799106 TGAAAAGAAAAAGAGAAGTGATATCCT 57.201 29.630 0.00 0.00 0.00 3.24
374 375 8.299570 GCCATGAAAAGAAAAAGAGAAGTGATA 58.700 33.333 0.00 0.00 0.00 2.15
375 376 7.150640 GCCATGAAAAGAAAAAGAGAAGTGAT 58.849 34.615 0.00 0.00 0.00 3.06
376 377 6.461509 GGCCATGAAAAGAAAAAGAGAAGTGA 60.462 38.462 0.00 0.00 0.00 3.41
377 378 5.693555 GGCCATGAAAAGAAAAAGAGAAGTG 59.306 40.000 0.00 0.00 0.00 3.16
378 379 5.507985 CGGCCATGAAAAGAAAAAGAGAAGT 60.508 40.000 2.24 0.00 0.00 3.01
379 380 4.919754 CGGCCATGAAAAGAAAAAGAGAAG 59.080 41.667 2.24 0.00 0.00 2.85
380 381 4.340950 ACGGCCATGAAAAGAAAAAGAGAA 59.659 37.500 2.24 0.00 0.00 2.87
381 382 3.888930 ACGGCCATGAAAAGAAAAAGAGA 59.111 39.130 2.24 0.00 0.00 3.10
382 383 4.243007 ACGGCCATGAAAAGAAAAAGAG 57.757 40.909 2.24 0.00 0.00 2.85
383 384 4.825085 ACTACGGCCATGAAAAGAAAAAGA 59.175 37.500 2.24 0.00 0.00 2.52
384 385 4.917415 CACTACGGCCATGAAAAGAAAAAG 59.083 41.667 2.24 0.00 0.00 2.27
385 386 4.339814 ACACTACGGCCATGAAAAGAAAAA 59.660 37.500 2.24 0.00 0.00 1.94
386 387 3.886505 ACACTACGGCCATGAAAAGAAAA 59.113 39.130 2.24 0.00 0.00 2.29
387 388 3.482436 ACACTACGGCCATGAAAAGAAA 58.518 40.909 2.24 0.00 0.00 2.52
388 389 3.134574 ACACTACGGCCATGAAAAGAA 57.865 42.857 2.24 0.00 0.00 2.52
389 390 2.851263 ACACTACGGCCATGAAAAGA 57.149 45.000 2.24 0.00 0.00 2.52
390 391 4.035208 GGATTACACTACGGCCATGAAAAG 59.965 45.833 2.24 0.00 0.00 2.27
391 392 3.942748 GGATTACACTACGGCCATGAAAA 59.057 43.478 2.24 0.00 0.00 2.29
392 393 3.199071 AGGATTACACTACGGCCATGAAA 59.801 43.478 2.24 0.00 0.00 2.69
393 394 2.769663 AGGATTACACTACGGCCATGAA 59.230 45.455 2.24 0.00 0.00 2.57
394 395 2.394632 AGGATTACACTACGGCCATGA 58.605 47.619 2.24 0.00 0.00 3.07
395 396 2.910688 AGGATTACACTACGGCCATG 57.089 50.000 2.24 0.00 0.00 3.66
396 397 6.127140 GGAATATAGGATTACACTACGGCCAT 60.127 42.308 2.24 0.00 0.00 4.40
397 398 5.186409 GGAATATAGGATTACACTACGGCCA 59.814 44.000 2.24 0.00 0.00 5.36
398 399 5.421374 AGGAATATAGGATTACACTACGGCC 59.579 44.000 0.00 0.00 0.00 6.13
399 400 6.527057 AGGAATATAGGATTACACTACGGC 57.473 41.667 0.00 0.00 0.00 5.68
400 401 8.630917 CCATAGGAATATAGGATTACACTACGG 58.369 40.741 0.00 0.00 0.00 4.02
401 402 8.136165 GCCATAGGAATATAGGATTACACTACG 58.864 40.741 0.00 0.00 0.00 3.51
402 403 8.978472 TGCCATAGGAATATAGGATTACACTAC 58.022 37.037 0.00 0.00 0.00 2.73
403 404 9.201989 CTGCCATAGGAATATAGGATTACACTA 57.798 37.037 0.00 0.00 0.00 2.74
404 405 8.083828 CTGCCATAGGAATATAGGATTACACT 57.916 38.462 0.00 0.00 0.00 3.55
454 455 3.421844 ACTACAATCCAAGAAAGGGCAC 58.578 45.455 0.00 0.00 0.00 5.01
455 456 3.806949 ACTACAATCCAAGAAAGGGCA 57.193 42.857 0.00 0.00 0.00 5.36
456 457 5.099042 TCTACTACAATCCAAGAAAGGGC 57.901 43.478 0.00 0.00 0.00 5.19
457 458 7.394816 TCTTTCTACTACAATCCAAGAAAGGG 58.605 38.462 18.10 1.37 46.76 3.95
458 459 9.454859 AATCTTTCTACTACAATCCAAGAAAGG 57.545 33.333 18.10 5.34 46.76 3.11
479 480 9.896645 ACATTCATACTGTCATCTTGTAATCTT 57.103 29.630 0.00 0.00 0.00 2.40
480 481 9.322773 CACATTCATACTGTCATCTTGTAATCT 57.677 33.333 0.00 0.00 0.00 2.40
481 482 9.102757 ACACATTCATACTGTCATCTTGTAATC 57.897 33.333 0.00 0.00 0.00 1.75
482 483 8.886719 CACACATTCATACTGTCATCTTGTAAT 58.113 33.333 0.00 0.00 0.00 1.89
483 484 7.148423 GCACACATTCATACTGTCATCTTGTAA 60.148 37.037 0.00 0.00 0.00 2.41
484 485 6.313658 GCACACATTCATACTGTCATCTTGTA 59.686 38.462 0.00 0.00 0.00 2.41
485 486 5.122869 GCACACATTCATACTGTCATCTTGT 59.877 40.000 0.00 0.00 0.00 3.16
486 487 5.353400 AGCACACATTCATACTGTCATCTTG 59.647 40.000 0.00 0.00 0.00 3.02
487 488 5.494724 AGCACACATTCATACTGTCATCTT 58.505 37.500 0.00 0.00 0.00 2.40
488 489 5.095145 AGCACACATTCATACTGTCATCT 57.905 39.130 0.00 0.00 0.00 2.90
489 490 5.583854 AGAAGCACACATTCATACTGTCATC 59.416 40.000 0.00 0.00 0.00 2.92
490 491 5.494724 AGAAGCACACATTCATACTGTCAT 58.505 37.500 0.00 0.00 0.00 3.06
491 492 4.898320 AGAAGCACACATTCATACTGTCA 58.102 39.130 0.00 0.00 0.00 3.58
492 493 5.174395 AGAGAAGCACACATTCATACTGTC 58.826 41.667 0.00 0.00 0.00 3.51
493 494 5.157940 AGAGAAGCACACATTCATACTGT 57.842 39.130 0.00 0.00 0.00 3.55
494 495 5.410746 ACAAGAGAAGCACACATTCATACTG 59.589 40.000 0.00 0.00 0.00 2.74
495 496 5.555017 ACAAGAGAAGCACACATTCATACT 58.445 37.500 0.00 0.00 0.00 2.12
496 497 5.869753 ACAAGAGAAGCACACATTCATAC 57.130 39.130 0.00 0.00 0.00 2.39
497 498 8.565896 AAATACAAGAGAAGCACACATTCATA 57.434 30.769 0.00 0.00 0.00 2.15
498 499 7.175467 TGAAATACAAGAGAAGCACACATTCAT 59.825 33.333 0.00 0.00 0.00 2.57
499 500 6.486320 TGAAATACAAGAGAAGCACACATTCA 59.514 34.615 0.00 0.00 0.00 2.57
500 501 6.902341 TGAAATACAAGAGAAGCACACATTC 58.098 36.000 0.00 0.00 0.00 2.67
501 502 6.882610 TGAAATACAAGAGAAGCACACATT 57.117 33.333 0.00 0.00 0.00 2.71
502 503 6.094603 GGATGAAATACAAGAGAAGCACACAT 59.905 38.462 0.00 0.00 0.00 3.21
503 504 5.412594 GGATGAAATACAAGAGAAGCACACA 59.587 40.000 0.00 0.00 0.00 3.72
504 505 5.446473 CGGATGAAATACAAGAGAAGCACAC 60.446 44.000 0.00 0.00 0.00 3.82
505 506 4.631377 CGGATGAAATACAAGAGAAGCACA 59.369 41.667 0.00 0.00 0.00 4.57
506 507 4.870426 TCGGATGAAATACAAGAGAAGCAC 59.130 41.667 0.00 0.00 0.00 4.40
507 508 5.084818 TCGGATGAAATACAAGAGAAGCA 57.915 39.130 0.00 0.00 0.00 3.91
508 509 6.251549 GTTTCGGATGAAATACAAGAGAAGC 58.748 40.000 0.00 0.00 45.31 3.86
509 510 6.371548 TGGTTTCGGATGAAATACAAGAGAAG 59.628 38.462 0.00 0.00 45.31 2.85
510 511 6.234920 TGGTTTCGGATGAAATACAAGAGAA 58.765 36.000 0.00 0.00 45.31 2.87
511 512 5.800296 TGGTTTCGGATGAAATACAAGAGA 58.200 37.500 0.00 0.00 45.31 3.10
512 513 5.065218 CCTGGTTTCGGATGAAATACAAGAG 59.935 44.000 0.00 0.00 45.31 2.85
513 514 4.941263 CCTGGTTTCGGATGAAATACAAGA 59.059 41.667 0.00 0.00 45.31 3.02
514 515 4.700213 ACCTGGTTTCGGATGAAATACAAG 59.300 41.667 0.00 0.00 45.31 3.16
515 516 4.658063 ACCTGGTTTCGGATGAAATACAA 58.342 39.130 0.00 0.00 45.31 2.41
516 517 4.295141 ACCTGGTTTCGGATGAAATACA 57.705 40.909 0.00 0.00 45.31 2.29
517 518 4.095932 GGAACCTGGTTTCGGATGAAATAC 59.904 45.833 14.28 0.00 45.31 1.89
518 519 4.263550 TGGAACCTGGTTTCGGATGAAATA 60.264 41.667 14.28 0.00 45.31 1.40
519 520 3.089284 GGAACCTGGTTTCGGATGAAAT 58.911 45.455 14.28 0.00 45.31 2.17
520 521 2.158593 TGGAACCTGGTTTCGGATGAAA 60.159 45.455 14.28 0.00 41.69 2.69
521 522 1.422024 TGGAACCTGGTTTCGGATGAA 59.578 47.619 14.28 0.00 0.00 2.57
522 523 1.003118 CTGGAACCTGGTTTCGGATGA 59.997 52.381 20.22 0.00 29.28 2.92
523 524 1.271379 ACTGGAACCTGGTTTCGGATG 60.271 52.381 29.36 14.07 32.15 3.51
524 525 1.064825 ACTGGAACCTGGTTTCGGAT 58.935 50.000 29.36 13.32 32.15 4.18
525 526 0.107831 CACTGGAACCTGGTTTCGGA 59.892 55.000 29.36 5.75 32.15 4.55
526 527 0.107831 TCACTGGAACCTGGTTTCGG 59.892 55.000 22.62 22.62 33.85 4.30
527 528 1.226746 GTCACTGGAACCTGGTTTCG 58.773 55.000 14.28 10.40 0.00 3.46
528 529 1.226746 CGTCACTGGAACCTGGTTTC 58.773 55.000 14.28 12.65 0.00 2.78
529 530 0.544697 ACGTCACTGGAACCTGGTTT 59.455 50.000 14.28 0.00 0.00 3.27
530 531 0.544697 AACGTCACTGGAACCTGGTT 59.455 50.000 12.82 12.82 0.00 3.67
531 532 1.416243 TAACGTCACTGGAACCTGGT 58.584 50.000 0.00 0.00 0.00 4.00
532 533 2.536761 TTAACGTCACTGGAACCTGG 57.463 50.000 0.00 0.00 0.00 4.45
533 534 4.783242 CAAATTAACGTCACTGGAACCTG 58.217 43.478 0.00 0.00 0.00 4.00
534 535 3.252458 GCAAATTAACGTCACTGGAACCT 59.748 43.478 0.00 0.00 0.00 3.50
535 536 3.003897 TGCAAATTAACGTCACTGGAACC 59.996 43.478 0.00 0.00 0.00 3.62
536 537 4.217754 TGCAAATTAACGTCACTGGAAC 57.782 40.909 0.00 0.00 0.00 3.62
537 538 5.446143 AATGCAAATTAACGTCACTGGAA 57.554 34.783 0.00 0.00 0.00 3.53
538 539 5.446143 AAATGCAAATTAACGTCACTGGA 57.554 34.783 0.00 0.00 0.00 3.86
539 540 6.638873 TGTTAAATGCAAATTAACGTCACTGG 59.361 34.615 22.83 0.00 43.11 4.00
540 541 7.616103 TGTTAAATGCAAATTAACGTCACTG 57.384 32.000 22.83 0.00 43.11 3.66
541 542 7.148820 GCATGTTAAATGCAAATTAACGTCACT 60.149 33.333 21.28 9.18 43.11 3.41
542 543 6.947680 GCATGTTAAATGCAAATTAACGTCAC 59.052 34.615 21.28 15.77 43.11 3.67
543 544 6.183359 CGCATGTTAAATGCAAATTAACGTCA 60.183 34.615 21.28 11.91 43.11 4.35
544 545 6.168299 CGCATGTTAAATGCAAATTAACGTC 58.832 36.000 21.28 16.71 43.11 4.34
545 546 5.061560 CCGCATGTTAAATGCAAATTAACGT 59.938 36.000 22.83 21.26 43.11 3.99
546 547 5.479735 CCGCATGTTAAATGCAAATTAACG 58.520 37.500 22.83 15.53 43.11 3.18
547 548 5.254842 GCCGCATGTTAAATGCAAATTAAC 58.745 37.500 22.19 22.19 44.75 2.01
548 549 4.032217 CGCCGCATGTTAAATGCAAATTAA 59.968 37.500 8.20 0.00 44.75 1.40
549 550 3.549471 CGCCGCATGTTAAATGCAAATTA 59.451 39.130 8.20 0.00 44.75 1.40
550 551 2.348059 CGCCGCATGTTAAATGCAAATT 59.652 40.909 8.20 0.00 44.75 1.82
551 552 1.925847 CGCCGCATGTTAAATGCAAAT 59.074 42.857 8.20 0.00 44.75 2.32
552 553 1.344458 CGCCGCATGTTAAATGCAAA 58.656 45.000 8.20 0.00 44.75 3.68
553 554 1.075425 GCGCCGCATGTTAAATGCAA 61.075 50.000 3.15 0.00 44.75 4.08
554 555 1.515952 GCGCCGCATGTTAAATGCA 60.516 52.632 3.15 0.00 44.75 3.96
555 556 1.075425 TTGCGCCGCATGTTAAATGC 61.075 50.000 14.63 0.00 38.76 3.56
556 557 0.915904 CTTGCGCCGCATGTTAAATG 59.084 50.000 14.63 0.00 38.76 2.32
557 558 0.179140 CCTTGCGCCGCATGTTAAAT 60.179 50.000 14.63 0.00 38.76 1.40
558 559 1.211449 CCTTGCGCCGCATGTTAAA 59.789 52.632 14.63 0.00 38.76 1.52
559 560 2.874019 CCTTGCGCCGCATGTTAA 59.126 55.556 14.63 0.00 38.76 2.01
560 561 3.809775 GCCTTGCGCCGCATGTTA 61.810 61.111 14.63 0.00 38.76 2.41
578 579 3.528370 CTAGGGTCCTCGTGGCCG 61.528 72.222 0.00 0.00 32.59 6.13
579 580 3.155167 CCTAGGGTCCTCGTGGCC 61.155 72.222 0.00 0.00 0.00 5.36
580 581 3.851128 GCCTAGGGTCCTCGTGGC 61.851 72.222 11.72 10.99 32.92 5.01
581 582 3.155167 GGCCTAGGGTCCTCGTGG 61.155 72.222 11.72 0.00 0.00 4.94
582 583 3.528370 CGGCCTAGGGTCCTCGTG 61.528 72.222 11.72 0.00 0.00 4.35
583 584 3.597086 AACGGCCTAGGGTCCTCGT 62.597 63.158 11.72 3.57 0.00 4.18
584 585 1.896122 AAAACGGCCTAGGGTCCTCG 61.896 60.000 11.72 2.97 0.00 4.63
585 586 0.392595 CAAAACGGCCTAGGGTCCTC 60.393 60.000 11.72 0.00 0.00 3.71
586 587 1.683441 CAAAACGGCCTAGGGTCCT 59.317 57.895 11.72 0.00 0.00 3.85
587 588 2.044555 GCAAAACGGCCTAGGGTCC 61.045 63.158 11.72 2.81 0.00 4.46
588 589 1.002502 AGCAAAACGGCCTAGGGTC 60.003 57.895 11.72 0.00 0.00 4.46
589 590 1.303317 CAGCAAAACGGCCTAGGGT 60.303 57.895 11.72 0.00 0.00 4.34
645 647 2.738521 CTCTGCGTGGGACGTTGG 60.739 66.667 0.00 0.00 44.73 3.77
869 942 6.984474 ACGAATCCATAGACGTAAATTCACAT 59.016 34.615 0.00 0.00 37.22 3.21
893 966 4.213564 ACAAGATGAACCAGAGATGGAC 57.786 45.455 0.31 0.00 0.00 4.02
896 969 4.216902 TGCAAACAAGATGAACCAGAGATG 59.783 41.667 0.00 0.00 0.00 2.90
988 1067 5.048782 CCGTCTGATCCATTTTCTTGTTTCA 60.049 40.000 0.00 0.00 0.00 2.69
1004 1083 3.474570 GGCCAGCCTCCGTCTGAT 61.475 66.667 0.00 0.00 33.54 2.90
1110 1189 1.681076 GTTGACGGGGGCCTTCTTA 59.319 57.895 0.84 0.00 0.00 2.10
1218 1297 6.651975 AGAAGAAGAAGAAGAAGTACCGAA 57.348 37.500 0.00 0.00 0.00 4.30
1272 1377 6.005066 TCTTCTGCAATATCAGATGGGAAA 57.995 37.500 0.00 0.00 42.12 3.13
1344 1449 2.612471 CGCCTCTTCATCATCATCCTCC 60.612 54.545 0.00 0.00 0.00 4.30
1466 1574 3.796178 GTGGCAAAGTGTTTGTGTATGTG 59.204 43.478 0.00 0.00 42.56 3.21
1483 1591 0.982852 ATCTCATCCCCGAAGTGGCA 60.983 55.000 0.00 0.00 35.87 4.92
1495 1603 5.375417 ACATCGTCTCATCTCATCTCATC 57.625 43.478 0.00 0.00 0.00 2.92
1496 1604 5.301298 TCAACATCGTCTCATCTCATCTCAT 59.699 40.000 0.00 0.00 0.00 2.90
1497 1605 4.641989 TCAACATCGTCTCATCTCATCTCA 59.358 41.667 0.00 0.00 0.00 3.27
1498 1606 5.180367 TCAACATCGTCTCATCTCATCTC 57.820 43.478 0.00 0.00 0.00 2.75
1499 1607 5.068855 ACATCAACATCGTCTCATCTCATCT 59.931 40.000 0.00 0.00 0.00 2.90
1526 1634 0.922560 CACGTACGACCGTCGCATAG 60.923 60.000 24.41 11.86 45.12 2.23
1576 1685 3.059868 TGAGCAAGTTTCTTTCTTACGCG 60.060 43.478 3.53 3.53 0.00 6.01
1577 1686 4.468095 TGAGCAAGTTTCTTTCTTACGC 57.532 40.909 0.00 0.00 0.00 4.42
1578 1687 6.147164 TGGTATGAGCAAGTTTCTTTCTTACG 59.853 38.462 0.00 0.00 0.00 3.18
1579 1688 7.435068 TGGTATGAGCAAGTTTCTTTCTTAC 57.565 36.000 0.00 0.00 0.00 2.34
1580 1689 7.362056 GCATGGTATGAGCAAGTTTCTTTCTTA 60.362 37.037 0.00 0.00 0.00 2.10
1637 1755 1.959226 CCAGTTTACGCACGCACCT 60.959 57.895 0.00 0.00 0.00 4.00
1751 1869 2.014068 GCCCTGTCATCTGGTAGTTGC 61.014 57.143 0.00 0.00 0.00 4.17
1766 1884 5.772825 TTTTTGCATATAGCTTAGCCCTG 57.227 39.130 0.00 0.00 45.94 4.45
1818 1940 0.742505 TGCGGTATTCTCTACACCCG 59.257 55.000 0.00 0.00 38.45 5.28
1835 3088 1.964290 GACAGCTGCGACAGTGATGC 61.964 60.000 15.27 0.10 33.43 3.91
1840 3093 0.608130 TATTGGACAGCTGCGACAGT 59.392 50.000 15.27 9.68 33.43 3.55
1841 3094 1.394917 GTTATTGGACAGCTGCGACAG 59.605 52.381 15.27 2.92 34.12 3.51
1863 3116 0.468226 ACACGGCTCTGAACTTCCAA 59.532 50.000 0.00 0.00 0.00 3.53
1929 3183 4.012374 GGACAGACATGAATGTGGAATGT 58.988 43.478 11.39 0.97 41.95 2.71
1958 3212 3.863424 TCTAGAAATGAATTCGGCGTGAC 59.137 43.478 6.85 0.00 43.15 3.67
2164 3419 3.965539 CTCGGGCTGGGCAGAGTTG 62.966 68.421 14.02 0.00 32.91 3.16
2197 3452 1.372997 ACGATCGCGCTGTTCAACT 60.373 52.632 16.60 0.00 42.48 3.16
2261 3516 2.111972 TCTGGAGAGGTACAAGAAGGGT 59.888 50.000 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.