Multiple sequence alignment - TraesCS6B01G295500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G295500 chr6B 100.000 2498 0 0 1 2498 530571828 530574325 0 4614
1 TraesCS6B01G295500 chr6D 89.771 2180 134 37 339 2498 349915991 349913881 0 2708
2 TraesCS6B01G295500 chr6A 93.018 1776 87 14 743 2498 494477711 494479469 0 2558
3 TraesCS6B01G295500 chr2B 91.767 498 41 0 995 1492 658210793 658210296 0 693
4 TraesCS6B01G295500 chr2D 91.566 498 42 0 995 1492 552607712 552607215 0 688
5 TraesCS6B01G295500 chr2A 90.964 498 45 0 995 1492 693243651 693243154 0 671


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G295500 chr6B 530571828 530574325 2497 False 4614 4614 100.000 1 2498 1 chr6B.!!$F1 2497
1 TraesCS6B01G295500 chr6D 349913881 349915991 2110 True 2708 2708 89.771 339 2498 1 chr6D.!!$R1 2159
2 TraesCS6B01G295500 chr6A 494477711 494479469 1758 False 2558 2558 93.018 743 2498 1 chr6A.!!$F1 1755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
148 149 0.027979 CTATTCGGCGCCACATGTTG 59.972 55.0 28.98 8.23 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1588 1600 1.136305 TGCTATTACACGCCACTCTCC 59.864 52.381 0.0 0.0 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.844946 GAAGATGCTAAAGAGGAGGCC 58.155 52.381 0.00 0.00 0.00 5.19
21 22 2.188818 AGATGCTAAAGAGGAGGCCT 57.811 50.000 3.86 3.86 36.03 5.19
22 23 1.767681 AGATGCTAAAGAGGAGGCCTG 59.232 52.381 12.00 0.00 31.76 4.85
23 24 0.842635 ATGCTAAAGAGGAGGCCTGG 59.157 55.000 12.00 0.00 31.76 4.45
24 25 0.547712 TGCTAAAGAGGAGGCCTGGT 60.548 55.000 12.00 0.00 31.76 4.00
25 26 0.107459 GCTAAAGAGGAGGCCTGGTG 60.107 60.000 12.00 0.00 31.76 4.17
26 27 1.280457 CTAAAGAGGAGGCCTGGTGT 58.720 55.000 12.00 0.00 31.76 4.16
27 28 2.467880 CTAAAGAGGAGGCCTGGTGTA 58.532 52.381 12.00 0.00 31.76 2.90
28 29 1.742308 AAAGAGGAGGCCTGGTGTAA 58.258 50.000 12.00 0.00 31.76 2.41
29 30 1.972588 AAGAGGAGGCCTGGTGTAAT 58.027 50.000 12.00 0.00 31.76 1.89
30 31 1.972588 AGAGGAGGCCTGGTGTAATT 58.027 50.000 12.00 0.00 31.76 1.40
31 32 1.840635 AGAGGAGGCCTGGTGTAATTC 59.159 52.381 12.00 0.00 31.76 2.17
32 33 0.541863 AGGAGGCCTGGTGTAATTCG 59.458 55.000 12.00 0.00 29.57 3.34
33 34 1.095807 GGAGGCCTGGTGTAATTCGC 61.096 60.000 12.00 0.00 0.00 4.70
34 35 0.107654 GAGGCCTGGTGTAATTCGCT 60.108 55.000 12.00 0.00 0.00 4.93
35 36 1.138266 GAGGCCTGGTGTAATTCGCTA 59.862 52.381 12.00 0.00 0.00 4.26
36 37 1.768870 AGGCCTGGTGTAATTCGCTAT 59.231 47.619 3.11 0.00 0.00 2.97
37 38 2.969950 AGGCCTGGTGTAATTCGCTATA 59.030 45.455 3.11 0.00 0.00 1.31
38 39 3.064931 GGCCTGGTGTAATTCGCTATAC 58.935 50.000 0.00 0.00 0.00 1.47
39 40 3.244112 GGCCTGGTGTAATTCGCTATACT 60.244 47.826 0.00 0.00 0.00 2.12
40 41 4.377897 GCCTGGTGTAATTCGCTATACTT 58.622 43.478 0.00 0.00 0.00 2.24
41 42 4.814771 GCCTGGTGTAATTCGCTATACTTT 59.185 41.667 0.00 0.00 0.00 2.66
42 43 5.296035 GCCTGGTGTAATTCGCTATACTTTT 59.704 40.000 0.00 0.00 0.00 2.27
43 44 6.183360 GCCTGGTGTAATTCGCTATACTTTTT 60.183 38.462 0.00 0.00 0.00 1.94
65 66 8.555896 TTTTTGGGAGGAACTAATTAAGGTTT 57.444 30.769 0.00 0.00 41.55 3.27
66 67 9.657728 TTTTTGGGAGGAACTAATTAAGGTTTA 57.342 29.630 0.00 0.00 41.55 2.01
67 68 8.640063 TTTGGGAGGAACTAATTAAGGTTTAC 57.360 34.615 0.00 0.00 41.55 2.01
68 69 6.724351 TGGGAGGAACTAATTAAGGTTTACC 58.276 40.000 0.00 0.00 41.55 2.85
69 70 6.506413 TGGGAGGAACTAATTAAGGTTTACCT 59.494 38.462 0.00 0.00 45.96 3.08
95 96 4.363991 GAGGCCTCCAACATAGATCATT 57.636 45.455 23.19 0.00 0.00 2.57
96 97 4.723309 GAGGCCTCCAACATAGATCATTT 58.277 43.478 23.19 0.00 0.00 2.32
97 98 5.134725 AGGCCTCCAACATAGATCATTTT 57.865 39.130 0.00 0.00 0.00 1.82
98 99 5.136105 AGGCCTCCAACATAGATCATTTTC 58.864 41.667 0.00 0.00 0.00 2.29
99 100 5.103771 AGGCCTCCAACATAGATCATTTTCT 60.104 40.000 0.00 0.00 0.00 2.52
100 101 5.595952 GGCCTCCAACATAGATCATTTTCTT 59.404 40.000 0.00 0.00 0.00 2.52
101 102 6.460676 GGCCTCCAACATAGATCATTTTCTTG 60.461 42.308 0.00 0.00 0.00 3.02
102 103 6.460676 GCCTCCAACATAGATCATTTTCTTGG 60.461 42.308 0.00 0.00 0.00 3.61
103 104 6.604795 CCTCCAACATAGATCATTTTCTTGGT 59.395 38.462 0.00 0.00 0.00 3.67
104 105 7.123247 CCTCCAACATAGATCATTTTCTTGGTT 59.877 37.037 0.00 0.00 0.00 3.67
105 106 8.055279 TCCAACATAGATCATTTTCTTGGTTC 57.945 34.615 0.00 0.00 0.00 3.62
106 107 6.968904 CCAACATAGATCATTTTCTTGGTTCG 59.031 38.462 0.00 0.00 0.00 3.95
107 108 6.683974 ACATAGATCATTTTCTTGGTTCGG 57.316 37.500 0.00 0.00 0.00 4.30
108 109 5.590259 ACATAGATCATTTTCTTGGTTCGGG 59.410 40.000 0.00 0.00 0.00 5.14
109 110 4.301072 AGATCATTTTCTTGGTTCGGGA 57.699 40.909 0.00 0.00 0.00 5.14
110 111 4.265073 AGATCATTTTCTTGGTTCGGGAG 58.735 43.478 0.00 0.00 0.00 4.30
111 112 3.502123 TCATTTTCTTGGTTCGGGAGT 57.498 42.857 0.00 0.00 0.00 3.85
112 113 3.146066 TCATTTTCTTGGTTCGGGAGTG 58.854 45.455 0.00 0.00 0.00 3.51
113 114 1.314730 TTTTCTTGGTTCGGGAGTGC 58.685 50.000 0.00 0.00 0.00 4.40
114 115 0.181587 TTTCTTGGTTCGGGAGTGCA 59.818 50.000 0.00 0.00 0.00 4.57
115 116 0.534203 TTCTTGGTTCGGGAGTGCAC 60.534 55.000 9.40 9.40 0.00 4.57
116 117 1.966451 CTTGGTTCGGGAGTGCACC 60.966 63.158 14.63 4.90 0.00 5.01
117 118 2.674563 CTTGGTTCGGGAGTGCACCA 62.675 60.000 14.63 0.00 37.53 4.17
118 119 2.112297 GGTTCGGGAGTGCACCAA 59.888 61.111 14.63 0.00 0.00 3.67
119 120 1.966451 GGTTCGGGAGTGCACCAAG 60.966 63.158 14.63 2.89 0.00 3.61
120 121 1.227853 GTTCGGGAGTGCACCAAGT 60.228 57.895 14.63 0.00 0.00 3.16
121 122 1.227823 TTCGGGAGTGCACCAAGTG 60.228 57.895 14.63 0.00 36.51 3.16
122 123 1.691195 TTCGGGAGTGCACCAAGTGA 61.691 55.000 14.63 2.58 35.23 3.41
123 124 1.003355 CGGGAGTGCACCAAGTGAT 60.003 57.895 14.63 0.00 35.23 3.06
124 125 1.300971 CGGGAGTGCACCAAGTGATG 61.301 60.000 14.63 0.00 35.23 3.07
125 126 1.589716 GGGAGTGCACCAAGTGATGC 61.590 60.000 14.63 0.00 42.40 3.91
126 127 1.499056 GAGTGCACCAAGTGATGCG 59.501 57.895 14.63 0.00 45.13 4.73
127 128 2.126734 GTGCACCAAGTGATGCGC 60.127 61.111 5.22 0.00 45.13 6.09
128 129 3.364441 TGCACCAAGTGATGCGCC 61.364 61.111 4.18 0.00 45.13 6.53
129 130 4.120331 GCACCAAGTGATGCGCCC 62.120 66.667 4.18 0.00 35.23 6.13
130 131 2.360350 CACCAAGTGATGCGCCCT 60.360 61.111 4.18 0.00 35.23 5.19
131 132 1.078497 CACCAAGTGATGCGCCCTA 60.078 57.895 4.18 0.00 35.23 3.53
132 133 0.464373 CACCAAGTGATGCGCCCTAT 60.464 55.000 4.18 0.00 35.23 2.57
133 134 0.255890 ACCAAGTGATGCGCCCTATT 59.744 50.000 4.18 0.00 0.00 1.73
134 135 0.947244 CCAAGTGATGCGCCCTATTC 59.053 55.000 4.18 0.00 0.00 1.75
135 136 0.583438 CAAGTGATGCGCCCTATTCG 59.417 55.000 4.18 0.00 0.00 3.34
136 137 0.532862 AAGTGATGCGCCCTATTCGG 60.533 55.000 4.18 0.00 0.00 4.30
137 138 2.280797 TGATGCGCCCTATTCGGC 60.281 61.111 4.18 0.00 46.13 5.54
143 144 4.849310 GCCCTATTCGGCGCCACA 62.849 66.667 28.98 12.83 39.64 4.17
144 145 2.111043 CCCTATTCGGCGCCACAT 59.889 61.111 28.98 19.54 0.00 3.21
145 146 2.253758 CCCTATTCGGCGCCACATG 61.254 63.158 28.98 10.38 0.00 3.21
146 147 1.523711 CCTATTCGGCGCCACATGT 60.524 57.895 28.98 9.64 0.00 3.21
147 148 1.095228 CCTATTCGGCGCCACATGTT 61.095 55.000 28.98 6.90 0.00 2.71
148 149 0.027979 CTATTCGGCGCCACATGTTG 59.972 55.000 28.98 8.23 0.00 3.33
149 150 1.987704 TATTCGGCGCCACATGTTGC 61.988 55.000 28.98 11.78 0.00 4.17
154 155 4.029186 CGCCACATGTTGCGTGCT 62.029 61.111 30.10 0.00 45.43 4.40
155 156 2.676029 CGCCACATGTTGCGTGCTA 61.676 57.895 30.10 0.00 45.43 3.49
156 157 1.135315 GCCACATGTTGCGTGCTAG 59.865 57.895 6.11 0.00 32.85 3.42
157 158 1.796151 CCACATGTTGCGTGCTAGG 59.204 57.895 0.00 0.00 32.85 3.02
158 159 0.955428 CCACATGTTGCGTGCTAGGT 60.955 55.000 0.00 0.00 32.85 3.08
159 160 0.166597 CACATGTTGCGTGCTAGGTG 59.833 55.000 0.00 0.00 0.00 4.00
160 161 1.135315 CATGTTGCGTGCTAGGTGC 59.865 57.895 0.00 0.00 43.25 5.01
169 170 4.162690 GCTAGGTGCACCCTCGGG 62.163 72.222 32.29 17.68 44.81 5.14
170 171 2.363795 CTAGGTGCACCCTCGGGA 60.364 66.667 32.29 9.88 44.81 5.14
171 172 1.762460 CTAGGTGCACCCTCGGGAT 60.762 63.158 32.29 14.48 44.81 3.85
172 173 1.306654 TAGGTGCACCCTCGGGATT 60.307 57.895 32.29 13.70 44.81 3.01
173 174 0.912487 TAGGTGCACCCTCGGGATTT 60.912 55.000 32.29 12.93 44.81 2.17
174 175 1.749258 GGTGCACCCTCGGGATTTC 60.749 63.158 26.31 0.00 38.96 2.17
175 176 1.299976 GTGCACCCTCGGGATTTCT 59.700 57.895 9.43 0.00 38.96 2.52
176 177 1.026718 GTGCACCCTCGGGATTTCTG 61.027 60.000 9.43 0.00 38.96 3.02
177 178 1.299976 GCACCCTCGGGATTTCTGT 59.700 57.895 9.43 0.00 38.96 3.41
178 179 0.322546 GCACCCTCGGGATTTCTGTT 60.323 55.000 9.43 0.00 38.96 3.16
179 180 1.739067 CACCCTCGGGATTTCTGTTC 58.261 55.000 9.43 0.00 38.96 3.18
180 181 1.279271 CACCCTCGGGATTTCTGTTCT 59.721 52.381 9.43 0.00 38.96 3.01
181 182 1.279271 ACCCTCGGGATTTCTGTTCTG 59.721 52.381 9.43 0.00 38.96 3.02
182 183 1.373570 CCTCGGGATTTCTGTTCTGC 58.626 55.000 0.00 0.00 0.00 4.26
183 184 1.339055 CCTCGGGATTTCTGTTCTGCA 60.339 52.381 0.00 0.00 0.00 4.41
184 185 1.734465 CTCGGGATTTCTGTTCTGCAC 59.266 52.381 0.00 0.00 0.00 4.57
185 186 0.804989 CGGGATTTCTGTTCTGCACC 59.195 55.000 0.00 0.00 0.00 5.01
186 187 1.177401 GGGATTTCTGTTCTGCACCC 58.823 55.000 0.00 0.00 0.00 4.61
187 188 0.804989 GGATTTCTGTTCTGCACCCG 59.195 55.000 0.00 0.00 0.00 5.28
188 189 1.523758 GATTTCTGTTCTGCACCCGT 58.476 50.000 0.00 0.00 0.00 5.28
189 190 1.880027 GATTTCTGTTCTGCACCCGTT 59.120 47.619 0.00 0.00 0.00 4.44
190 191 1.757682 TTTCTGTTCTGCACCCGTTT 58.242 45.000 0.00 0.00 0.00 3.60
191 192 1.757682 TTCTGTTCTGCACCCGTTTT 58.242 45.000 0.00 0.00 0.00 2.43
192 193 1.757682 TCTGTTCTGCACCCGTTTTT 58.242 45.000 0.00 0.00 0.00 1.94
193 194 1.403679 TCTGTTCTGCACCCGTTTTTG 59.596 47.619 0.00 0.00 0.00 2.44
194 195 0.457851 TGTTCTGCACCCGTTTTTGG 59.542 50.000 0.00 0.00 0.00 3.28
203 204 2.920724 CCCGTTTTTGGGGTTCATTT 57.079 45.000 0.00 0.00 46.17 2.32
204 205 2.488952 CCCGTTTTTGGGGTTCATTTG 58.511 47.619 0.00 0.00 46.17 2.32
205 206 2.488952 CCGTTTTTGGGGTTCATTTGG 58.511 47.619 0.00 0.00 0.00 3.28
206 207 2.158885 CCGTTTTTGGGGTTCATTTGGT 60.159 45.455 0.00 0.00 0.00 3.67
207 208 3.536570 CGTTTTTGGGGTTCATTTGGTT 58.463 40.909 0.00 0.00 0.00 3.67
208 209 3.942115 CGTTTTTGGGGTTCATTTGGTTT 59.058 39.130 0.00 0.00 0.00 3.27
209 210 4.396478 CGTTTTTGGGGTTCATTTGGTTTT 59.604 37.500 0.00 0.00 0.00 2.43
210 211 5.106118 CGTTTTTGGGGTTCATTTGGTTTTT 60.106 36.000 0.00 0.00 0.00 1.94
225 226 3.796764 TTTTTGGCCCTTTGCTTGG 57.203 47.368 0.00 0.00 40.92 3.61
226 227 0.915364 TTTTTGGCCCTTTGCTTGGT 59.085 45.000 0.00 0.00 40.92 3.67
227 228 0.915364 TTTTGGCCCTTTGCTTGGTT 59.085 45.000 0.00 0.00 40.92 3.67
228 229 0.915364 TTTGGCCCTTTGCTTGGTTT 59.085 45.000 0.00 0.00 40.92 3.27
229 230 0.915364 TTGGCCCTTTGCTTGGTTTT 59.085 45.000 0.00 0.00 40.92 2.43
230 231 0.467804 TGGCCCTTTGCTTGGTTTTC 59.532 50.000 0.00 0.00 40.92 2.29
231 232 0.250295 GGCCCTTTGCTTGGTTTTCC 60.250 55.000 0.00 0.00 40.92 3.13
232 233 0.250295 GCCCTTTGCTTGGTTTTCCC 60.250 55.000 0.00 0.00 36.61 3.97
233 234 0.033366 CCCTTTGCTTGGTTTTCCCG 59.967 55.000 0.00 0.00 39.73 5.14
234 235 1.036707 CCTTTGCTTGGTTTTCCCGA 58.963 50.000 0.00 0.00 39.73 5.14
235 236 1.000274 CCTTTGCTTGGTTTTCCCGAG 60.000 52.381 0.00 0.00 46.47 4.63
236 237 1.000274 CTTTGCTTGGTTTTCCCGAGG 60.000 52.381 0.00 0.00 44.17 4.63
237 238 0.106419 TTGCTTGGTTTTCCCGAGGT 60.106 50.000 0.00 0.00 44.17 3.85
238 239 0.106419 TGCTTGGTTTTCCCGAGGTT 60.106 50.000 0.00 0.00 44.17 3.50
239 240 1.037493 GCTTGGTTTTCCCGAGGTTT 58.963 50.000 0.00 0.00 44.17 3.27
240 241 1.411246 GCTTGGTTTTCCCGAGGTTTT 59.589 47.619 0.00 0.00 44.17 2.43
241 242 2.801699 GCTTGGTTTTCCCGAGGTTTTG 60.802 50.000 0.00 0.00 44.17 2.44
242 243 1.404843 TGGTTTTCCCGAGGTTTTGG 58.595 50.000 0.00 0.00 39.73 3.28
243 244 0.032952 GGTTTTCCCGAGGTTTTGGC 59.967 55.000 0.00 0.00 0.00 4.52
244 245 1.037493 GTTTTCCCGAGGTTTTGGCT 58.963 50.000 0.00 0.00 0.00 4.75
245 246 1.036707 TTTTCCCGAGGTTTTGGCTG 58.963 50.000 0.00 0.00 0.00 4.85
246 247 0.825840 TTTCCCGAGGTTTTGGCTGG 60.826 55.000 0.00 0.00 0.00 4.85
247 248 2.002018 TTCCCGAGGTTTTGGCTGGT 62.002 55.000 0.00 0.00 0.00 4.00
248 249 1.530655 CCCGAGGTTTTGGCTGGTT 60.531 57.895 0.00 0.00 0.00 3.67
249 250 1.112916 CCCGAGGTTTTGGCTGGTTT 61.113 55.000 0.00 0.00 0.00 3.27
250 251 0.750249 CCGAGGTTTTGGCTGGTTTT 59.250 50.000 0.00 0.00 0.00 2.43
251 252 1.138069 CCGAGGTTTTGGCTGGTTTTT 59.862 47.619 0.00 0.00 0.00 1.94
272 273 4.413495 TTCGGGAAGCATTACTTTTTCG 57.587 40.909 0.00 0.00 39.29 3.46
273 274 2.160813 TCGGGAAGCATTACTTTTTCGC 59.839 45.455 0.00 0.00 39.29 4.70
274 275 2.515912 GGGAAGCATTACTTTTTCGCG 58.484 47.619 0.00 0.00 39.29 5.87
275 276 2.160813 GGGAAGCATTACTTTTTCGCGA 59.839 45.455 3.71 3.71 39.29 5.87
276 277 3.417185 GGAAGCATTACTTTTTCGCGAG 58.583 45.455 9.59 0.00 39.29 5.03
277 278 3.124636 GGAAGCATTACTTTTTCGCGAGA 59.875 43.478 9.59 0.43 39.29 4.04
278 279 4.378046 GGAAGCATTACTTTTTCGCGAGAA 60.378 41.667 9.59 8.82 43.71 2.87
279 280 4.783540 GAAGCATTACTTTTTCGCGAGAAG 59.216 41.667 24.12 24.12 45.16 2.85
280 281 6.663456 GAAGCATTACTTTTTCGCGAGAAGC 61.663 44.000 25.09 18.08 45.16 3.86
281 282 8.939520 GAAGCATTACTTTTTCGCGAGAAGCA 62.940 42.308 25.09 15.37 45.16 3.91
287 288 2.665777 TTCGCGAGAAGCATAGCAC 58.334 52.632 9.59 0.00 46.92 4.40
288 289 0.108851 TTCGCGAGAAGCATAGCACA 60.109 50.000 9.59 0.00 46.92 4.57
289 290 1.671556 TTCGCGAGAAGCATAGCACAA 60.672 47.619 9.59 0.00 46.92 3.33
290 291 3.803527 TTCGCGAGAAGCATAGCACAAC 61.804 50.000 9.59 0.00 46.92 3.32
292 293 6.684278 TTCGCGAGAAGCATAGCACAACTA 62.684 45.833 9.59 0.00 46.92 2.24
293 294 7.898676 TTCGCGAGAAGCATAGCACAACTAT 62.899 44.000 9.59 0.00 46.92 2.12
304 305 3.207474 GCACAACTATGCTTCCACAAG 57.793 47.619 0.00 0.00 42.62 3.16
305 306 2.813754 GCACAACTATGCTTCCACAAGA 59.186 45.455 0.00 0.00 42.62 3.02
306 307 3.253188 GCACAACTATGCTTCCACAAGAA 59.747 43.478 0.00 0.00 42.62 2.52
307 308 4.261572 GCACAACTATGCTTCCACAAGAAA 60.262 41.667 0.00 0.00 42.62 2.52
308 309 5.215160 CACAACTATGCTTCCACAAGAAAC 58.785 41.667 0.00 0.00 32.88 2.78
309 310 4.887071 ACAACTATGCTTCCACAAGAAACA 59.113 37.500 0.00 0.00 35.13 2.83
310 311 5.536161 ACAACTATGCTTCCACAAGAAACAT 59.464 36.000 0.00 0.00 42.54 2.71
311 312 6.714810 ACAACTATGCTTCCACAAGAAACATA 59.285 34.615 0.00 0.00 40.79 2.29
312 313 7.230510 ACAACTATGCTTCCACAAGAAACATAA 59.769 33.333 0.00 0.00 41.01 1.90
313 314 7.759489 ACTATGCTTCCACAAGAAACATAAA 57.241 32.000 0.00 0.00 41.01 1.40
314 315 8.353423 ACTATGCTTCCACAAGAAACATAAAT 57.647 30.769 0.00 0.00 41.01 1.40
315 316 8.246180 ACTATGCTTCCACAAGAAACATAAATG 58.754 33.333 0.00 0.00 41.01 2.32
316 317 6.403866 TGCTTCCACAAGAAACATAAATGT 57.596 33.333 0.00 0.00 44.20 2.71
317 318 6.215121 TGCTTCCACAAGAAACATAAATGTG 58.785 36.000 0.00 0.00 41.61 3.21
318 319 5.119125 GCTTCCACAAGAAACATAAATGTGC 59.881 40.000 0.00 0.00 41.61 4.57
319 320 6.403866 TTCCACAAGAAACATAAATGTGCT 57.596 33.333 0.00 0.00 41.61 4.40
320 321 6.403866 TCCACAAGAAACATAAATGTGCTT 57.596 33.333 0.00 1.66 41.61 3.91
321 322 6.446318 TCCACAAGAAACATAAATGTGCTTC 58.554 36.000 0.00 0.00 41.61 3.86
322 323 6.265196 TCCACAAGAAACATAAATGTGCTTCT 59.735 34.615 0.00 0.81 41.61 2.85
323 324 6.925165 CCACAAGAAACATAAATGTGCTTCTT 59.075 34.615 13.37 13.37 43.34 2.52
328 329 9.598517 AAGAAACATAAATGTGCTTCTTGAAAA 57.401 25.926 16.46 0.00 42.08 2.29
329 330 9.768662 AGAAACATAAATGTGCTTCTTGAAAAT 57.231 25.926 0.00 0.00 41.61 1.82
383 385 3.058293 TGAAAAGGCATAGTTGTGCTTCG 60.058 43.478 0.95 0.00 44.45 3.79
385 387 1.026718 AGGCATAGTTGTGCTTCGCC 61.027 55.000 0.95 0.00 44.45 5.54
386 388 1.429423 GCATAGTTGTGCTTCGCCC 59.571 57.895 0.00 0.00 41.82 6.13
387 389 1.993369 GCATAGTTGTGCTTCGCCCC 61.993 60.000 0.00 0.00 41.82 5.80
388 390 1.449601 ATAGTTGTGCTTCGCCCCG 60.450 57.895 0.00 0.00 0.00 5.73
389 391 1.895020 ATAGTTGTGCTTCGCCCCGA 61.895 55.000 0.00 0.00 0.00 5.14
390 392 2.102109 TAGTTGTGCTTCGCCCCGAA 62.102 55.000 0.00 0.00 43.75 4.30
391 393 2.203224 TTGTGCTTCGCCCCGAAA 60.203 55.556 1.59 0.00 45.23 3.46
392 394 2.258013 TTGTGCTTCGCCCCGAAAG 61.258 57.895 1.59 0.00 45.23 2.62
393 395 2.668550 GTGCTTCGCCCCGAAAGT 60.669 61.111 1.59 0.00 45.23 2.66
394 396 1.375013 GTGCTTCGCCCCGAAAGTA 60.375 57.895 1.59 0.00 45.23 2.24
395 397 1.079405 TGCTTCGCCCCGAAAGTAG 60.079 57.895 1.59 0.00 45.23 2.57
396 398 1.217244 GCTTCGCCCCGAAAGTAGA 59.783 57.895 1.59 0.00 45.23 2.59
397 399 0.390735 GCTTCGCCCCGAAAGTAGAA 60.391 55.000 1.59 0.00 45.23 2.10
398 400 1.942586 GCTTCGCCCCGAAAGTAGAAA 60.943 52.381 1.59 0.00 45.23 2.52
399 401 2.419667 CTTCGCCCCGAAAGTAGAAAA 58.580 47.619 1.59 0.00 45.23 2.29
406 408 3.304458 CCCCGAAAGTAGAAAAGCACAAC 60.304 47.826 0.00 0.00 0.00 3.32
408 410 4.753107 CCCGAAAGTAGAAAAGCACAACTA 59.247 41.667 0.00 0.00 0.00 2.24
424 426 7.225523 GCACAACTATGCTTTCAAATTATGG 57.774 36.000 0.00 0.00 42.62 2.74
428 430 9.777297 ACAACTATGCTTTCAAATTATGGTTTT 57.223 25.926 0.00 0.00 0.00 2.43
431 433 9.995003 ACTATGCTTTCAAATTATGGTTTTTGA 57.005 25.926 0.00 0.00 39.42 2.69
491 497 8.669946 TTTTTGTCTTTGTTTCTTTTCTGGTT 57.330 26.923 0.00 0.00 0.00 3.67
492 498 8.669946 TTTTGTCTTTGTTTCTTTTCTGGTTT 57.330 26.923 0.00 0.00 0.00 3.27
493 499 7.883229 TTGTCTTTGTTTCTTTTCTGGTTTC 57.117 32.000 0.00 0.00 0.00 2.78
494 500 7.227049 TGTCTTTGTTTCTTTTCTGGTTTCT 57.773 32.000 0.00 0.00 0.00 2.52
495 501 7.090173 TGTCTTTGTTTCTTTTCTGGTTTCTG 58.910 34.615 0.00 0.00 0.00 3.02
498 504 8.798402 TCTTTGTTTCTTTTCTGGTTTCTGTTA 58.202 29.630 0.00 0.00 0.00 2.41
501 507 9.936759 TTGTTTCTTTTCTGGTTTCTGTTATTT 57.063 25.926 0.00 0.00 0.00 1.40
515 521 9.726232 GTTTCTGTTATTTTATTTCCGGTATCC 57.274 33.333 0.00 0.00 0.00 2.59
516 522 9.463902 TTTCTGTTATTTTATTTCCGGTATCCA 57.536 29.630 0.00 0.00 0.00 3.41
518 524 9.635404 TCTGTTATTTTATTTCCGGTATCCAAT 57.365 29.630 0.00 1.99 0.00 3.16
528 534 3.951037 TCCGGTATCCAATGGTGAAAATG 59.049 43.478 0.00 0.00 0.00 2.32
529 535 3.951037 CCGGTATCCAATGGTGAAAATGA 59.049 43.478 0.00 0.00 0.00 2.57
530 536 4.202010 CCGGTATCCAATGGTGAAAATGAC 60.202 45.833 0.00 0.00 0.00 3.06
542 549 7.156876 TGGTGAAAATGACCATGATTTAGAC 57.843 36.000 0.00 0.00 38.63 2.59
543 550 6.947733 TGGTGAAAATGACCATGATTTAGACT 59.052 34.615 0.00 0.00 38.63 3.24
563 570 6.479884 AGACTCAAGGTGCAAGAGATAAAAT 58.520 36.000 12.07 0.00 33.69 1.82
564 571 6.944862 AGACTCAAGGTGCAAGAGATAAAATT 59.055 34.615 12.07 0.00 33.69 1.82
565 572 7.120432 AGACTCAAGGTGCAAGAGATAAAATTC 59.880 37.037 12.07 0.68 33.69 2.17
566 573 6.716628 ACTCAAGGTGCAAGAGATAAAATTCA 59.283 34.615 12.07 0.00 33.69 2.57
571 578 8.125978 AGGTGCAAGAGATAAAATTCATTGAA 57.874 30.769 0.75 0.75 0.00 2.69
597 604 9.822185 AAAAATGAATCATCTATGTAAAAGGGC 57.178 29.630 0.00 0.00 0.00 5.19
598 605 8.537728 AAATGAATCATCTATGTAAAAGGGCA 57.462 30.769 0.00 0.00 0.00 5.36
599 606 8.537728 AATGAATCATCTATGTAAAAGGGCAA 57.462 30.769 0.00 0.00 0.00 4.52
600 607 7.953005 TGAATCATCTATGTAAAAGGGCAAA 57.047 32.000 0.00 0.00 0.00 3.68
608 615 5.712152 ATGTAAAAGGGCAAAACTCTCAG 57.288 39.130 0.00 0.00 0.00 3.35
616 623 1.727335 GCAAAACTCTCAGGTAGCGAC 59.273 52.381 0.00 0.00 0.00 5.19
624 631 1.000955 CTCAGGTAGCGACAAGTTGGT 59.999 52.381 7.96 0.00 0.00 3.67
625 632 1.148310 CAGGTAGCGACAAGTTGGTG 58.852 55.000 7.96 0.00 0.00 4.17
654 661 1.535028 GTGCGTCATTTGTCACCATCA 59.465 47.619 0.00 0.00 0.00 3.07
657 664 4.006319 TGCGTCATTTGTCACCATCATAA 58.994 39.130 0.00 0.00 0.00 1.90
680 687 2.152016 GGTGGGAGTGAGCTTTGTAAC 58.848 52.381 0.00 0.00 0.00 2.50
681 688 1.798813 GTGGGAGTGAGCTTTGTAACG 59.201 52.381 0.00 0.00 0.00 3.18
682 689 1.414919 TGGGAGTGAGCTTTGTAACGT 59.585 47.619 0.00 0.00 0.00 3.99
683 690 2.629137 TGGGAGTGAGCTTTGTAACGTA 59.371 45.455 0.00 0.00 0.00 3.57
684 691 2.991866 GGGAGTGAGCTTTGTAACGTAC 59.008 50.000 0.00 0.00 0.00 3.67
685 692 2.991866 GGAGTGAGCTTTGTAACGTACC 59.008 50.000 0.00 0.00 0.00 3.34
686 693 2.991866 GAGTGAGCTTTGTAACGTACCC 59.008 50.000 0.00 0.00 0.00 3.69
687 694 2.071540 GTGAGCTTTGTAACGTACCCC 58.928 52.381 0.00 0.00 0.00 4.95
688 695 1.972795 TGAGCTTTGTAACGTACCCCT 59.027 47.619 0.00 0.00 0.00 4.79
689 696 2.369532 TGAGCTTTGTAACGTACCCCTT 59.630 45.455 0.00 0.00 0.00 3.95
690 697 2.998670 GAGCTTTGTAACGTACCCCTTC 59.001 50.000 0.00 0.00 0.00 3.46
691 698 2.636403 AGCTTTGTAACGTACCCCTTCT 59.364 45.455 0.00 0.00 0.00 2.85
692 699 3.834231 AGCTTTGTAACGTACCCCTTCTA 59.166 43.478 0.00 0.00 0.00 2.10
693 700 4.081807 AGCTTTGTAACGTACCCCTTCTAG 60.082 45.833 0.00 0.00 0.00 2.43
694 701 4.082026 GCTTTGTAACGTACCCCTTCTAGA 60.082 45.833 0.00 0.00 0.00 2.43
695 702 5.567423 GCTTTGTAACGTACCCCTTCTAGAA 60.567 44.000 4.81 4.81 0.00 2.10
696 703 6.418057 TTTGTAACGTACCCCTTCTAGAAA 57.582 37.500 6.63 0.00 0.00 2.52
697 704 6.418057 TTGTAACGTACCCCTTCTAGAAAA 57.582 37.500 6.63 0.00 0.00 2.29
698 705 6.418057 TGTAACGTACCCCTTCTAGAAAAA 57.582 37.500 6.63 0.00 0.00 1.94
699 706 7.008021 TGTAACGTACCCCTTCTAGAAAAAT 57.992 36.000 6.63 0.00 0.00 1.82
700 707 7.452562 TGTAACGTACCCCTTCTAGAAAAATT 58.547 34.615 6.63 0.00 0.00 1.82
701 708 8.592809 TGTAACGTACCCCTTCTAGAAAAATTA 58.407 33.333 6.63 0.00 0.00 1.40
702 709 9.435688 GTAACGTACCCCTTCTAGAAAAATTAA 57.564 33.333 6.63 0.00 0.00 1.40
704 711 9.524496 AACGTACCCCTTCTAGAAAAATTAATT 57.476 29.630 6.63 0.00 0.00 1.40
733 740 8.843885 GGTACCCCTAATTACTGATTTCATAC 57.156 38.462 0.00 0.00 0.00 2.39
734 741 8.434392 GGTACCCCTAATTACTGATTTCATACA 58.566 37.037 0.00 0.00 0.00 2.29
737 744 9.936329 ACCCCTAATTACTGATTTCATACATTT 57.064 29.630 0.00 0.00 0.00 2.32
777 786 1.347707 TCCACTACTTCAGCCCAACAG 59.652 52.381 0.00 0.00 0.00 3.16
813 825 4.387437 CCATTTAATCTCCCAAAGGGCCTA 60.387 45.833 6.41 0.00 43.94 3.93
815 827 2.828661 AATCTCCCAAAGGGCCTAAC 57.171 50.000 6.41 0.00 43.94 2.34
844 856 1.029947 CCTTGACGGCCCAATACACC 61.030 60.000 0.00 0.00 0.00 4.16
856 868 0.323629 AATACACCCACACCACCGAG 59.676 55.000 0.00 0.00 0.00 4.63
915 927 8.700051 AGACAGTATATAATCTCAACACAAGCT 58.300 33.333 0.00 0.00 0.00 3.74
919 931 0.792640 AATCTCAACACAAGCTCGCG 59.207 50.000 0.00 0.00 0.00 5.87
984 996 2.360191 GCAGCCAATCCTCCCCAA 59.640 61.111 0.00 0.00 0.00 4.12
1566 1578 3.244735 TGCTGGTACCAGAAATGCTGTTA 60.245 43.478 40.26 10.90 46.30 2.41
1588 1600 1.534729 GTCTGCCAACTTGTTAGGGG 58.465 55.000 0.00 0.00 0.00 4.79
1613 1625 1.257936 GTGGCGTGTAATAGCATGTCG 59.742 52.381 0.00 0.00 33.04 4.35
1618 1630 3.734231 GCGTGTAATAGCATGTCGTATGT 59.266 43.478 0.00 0.00 0.00 2.29
1623 1635 7.149176 CGTGTAATAGCATGTCGTATGTACTTC 60.149 40.741 0.00 0.00 0.00 3.01
1630 1642 8.662781 AGCATGTCGTATGTACTTCAATTATT 57.337 30.769 0.00 0.00 0.00 1.40
1648 1668 8.375506 TCAATTATTAGCTAGGTAGAATGTGGG 58.624 37.037 1.31 0.04 0.00 4.61
1671 1691 6.825721 GGGAAGATTATCTGTTGATTCAGTGT 59.174 38.462 0.00 0.00 36.85 3.55
1674 1694 9.160496 GAAGATTATCTGTTGATTCAGTGTTCT 57.840 33.333 0.00 0.00 36.85 3.01
1691 1711 8.675504 TCAGTGTTCTTGCTAGTAACTATAGAC 58.324 37.037 6.78 0.00 0.00 2.59
1699 1719 9.814507 CTTGCTAGTAACTATAGACGATTGTAG 57.185 37.037 6.78 0.00 0.00 2.74
1709 1729 4.832590 AGACGATTGTAGGTAGATTCCG 57.167 45.455 0.00 0.00 0.00 4.30
1765 1785 7.053498 TGTTGCTCATGCTAGTCCATTTTATA 58.947 34.615 0.00 0.00 40.48 0.98
2006 2026 8.634475 AAGAAGAAACTTTTGTCATGCTTTAC 57.366 30.769 0.00 0.00 0.00 2.01
2252 2272 9.893634 ATCATGATGAAAATTGCCTTATTTGAA 57.106 25.926 7.59 0.00 0.00 2.69
2319 2339 8.842358 AAAAGTCTTGTATTTTGATACGGAGA 57.158 30.769 0.00 0.00 0.00 3.71
2325 2345 9.529325 TCTTGTATTTTGATACGGAGAAGTATG 57.471 33.333 0.00 0.00 37.43 2.39
2330 2350 7.786178 TTTTGATACGGAGAAGTATGAATGG 57.214 36.000 0.00 0.00 37.43 3.16
2334 2354 7.210174 TGATACGGAGAAGTATGAATGGAAAG 58.790 38.462 0.00 0.00 37.43 2.62
2388 2408 8.031864 AGAATGACAGAACTGTAGATTGTACTG 58.968 37.037 7.46 0.00 45.05 2.74
2428 2456 5.415389 GCCATTTTGCATTTGGAATTAGGTT 59.585 36.000 12.79 0.00 31.94 3.50
2462 2490 6.949352 TCTGAAAGACTTGAATTTTGCTCT 57.051 33.333 0.00 0.00 38.67 4.09
2476 2505 2.732412 TGCTCTGTCTTGACTGCTAC 57.268 50.000 2.35 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.437651 AGGCCTCCTCTTTAGCATCTTC 59.562 50.000 0.00 0.00 0.00 2.87
1 2 2.172293 CAGGCCTCCTCTTTAGCATCTT 59.828 50.000 0.00 0.00 0.00 2.40
2 3 1.767681 CAGGCCTCCTCTTTAGCATCT 59.232 52.381 0.00 0.00 0.00 2.90
3 4 1.202746 CCAGGCCTCCTCTTTAGCATC 60.203 57.143 0.00 0.00 0.00 3.91
4 5 0.842635 CCAGGCCTCCTCTTTAGCAT 59.157 55.000 0.00 0.00 0.00 3.79
5 6 0.547712 ACCAGGCCTCCTCTTTAGCA 60.548 55.000 0.00 0.00 0.00 3.49
6 7 0.107459 CACCAGGCCTCCTCTTTAGC 60.107 60.000 0.00 0.00 0.00 3.09
7 8 1.280457 ACACCAGGCCTCCTCTTTAG 58.720 55.000 0.00 0.00 0.00 1.85
8 9 2.634639 TACACCAGGCCTCCTCTTTA 57.365 50.000 0.00 0.00 0.00 1.85
9 10 1.742308 TTACACCAGGCCTCCTCTTT 58.258 50.000 0.00 0.00 0.00 2.52
10 11 1.972588 ATTACACCAGGCCTCCTCTT 58.027 50.000 0.00 0.00 0.00 2.85
11 12 1.840635 GAATTACACCAGGCCTCCTCT 59.159 52.381 0.00 0.00 0.00 3.69
12 13 1.473434 CGAATTACACCAGGCCTCCTC 60.473 57.143 0.00 0.00 0.00 3.71
13 14 0.541863 CGAATTACACCAGGCCTCCT 59.458 55.000 0.00 0.00 0.00 3.69
14 15 1.095807 GCGAATTACACCAGGCCTCC 61.096 60.000 0.00 0.00 0.00 4.30
15 16 0.107654 AGCGAATTACACCAGGCCTC 60.108 55.000 0.00 0.00 0.00 4.70
16 17 1.200519 TAGCGAATTACACCAGGCCT 58.799 50.000 0.00 0.00 0.00 5.19
17 18 2.256117 ATAGCGAATTACACCAGGCC 57.744 50.000 0.00 0.00 0.00 5.19
18 19 3.991367 AGTATAGCGAATTACACCAGGC 58.009 45.455 0.00 0.00 0.00 4.85
19 20 6.920569 AAAAGTATAGCGAATTACACCAGG 57.079 37.500 0.00 0.00 0.00 4.45
40 41 8.555896 AAACCTTAATTAGTTCCTCCCAAAAA 57.444 30.769 0.00 0.00 0.00 1.94
41 42 9.081204 GTAAACCTTAATTAGTTCCTCCCAAAA 57.919 33.333 0.00 0.00 0.00 2.44
42 43 7.670979 GGTAAACCTTAATTAGTTCCTCCCAAA 59.329 37.037 0.00 0.00 0.00 3.28
43 44 7.018851 AGGTAAACCTTAATTAGTTCCTCCCAA 59.981 37.037 0.00 0.00 46.09 4.12
44 45 6.506413 AGGTAAACCTTAATTAGTTCCTCCCA 59.494 38.462 0.00 0.00 46.09 4.37
45 46 6.966751 AGGTAAACCTTAATTAGTTCCTCCC 58.033 40.000 0.00 0.00 46.09 4.30
74 75 4.363991 AATGATCTATGTTGGAGGCCTC 57.636 45.455 25.59 25.59 0.00 4.70
75 76 4.803329 AAATGATCTATGTTGGAGGCCT 57.197 40.909 3.86 3.86 0.00 5.19
76 77 5.136105 AGAAAATGATCTATGTTGGAGGCC 58.864 41.667 0.00 0.00 0.00 5.19
77 78 6.460676 CCAAGAAAATGATCTATGTTGGAGGC 60.461 42.308 9.39 0.00 28.95 4.70
78 79 6.604795 ACCAAGAAAATGATCTATGTTGGAGG 59.395 38.462 17.11 4.64 31.13 4.30
79 80 7.636150 ACCAAGAAAATGATCTATGTTGGAG 57.364 36.000 17.11 0.00 31.13 3.86
80 81 7.148255 CGAACCAAGAAAATGATCTATGTTGGA 60.148 37.037 17.11 0.00 31.13 3.53
81 82 6.968904 CGAACCAAGAAAATGATCTATGTTGG 59.031 38.462 11.92 11.92 32.32 3.77
82 83 6.968904 CCGAACCAAGAAAATGATCTATGTTG 59.031 38.462 0.00 0.00 0.00 3.33
83 84 6.095440 CCCGAACCAAGAAAATGATCTATGTT 59.905 38.462 0.00 0.00 0.00 2.71
84 85 5.590259 CCCGAACCAAGAAAATGATCTATGT 59.410 40.000 0.00 0.00 0.00 2.29
85 86 5.822519 TCCCGAACCAAGAAAATGATCTATG 59.177 40.000 0.00 0.00 0.00 2.23
86 87 6.001449 TCCCGAACCAAGAAAATGATCTAT 57.999 37.500 0.00 0.00 0.00 1.98
87 88 5.045869 ACTCCCGAACCAAGAAAATGATCTA 60.046 40.000 0.00 0.00 0.00 1.98
88 89 4.263506 ACTCCCGAACCAAGAAAATGATCT 60.264 41.667 0.00 0.00 0.00 2.75
89 90 4.010349 ACTCCCGAACCAAGAAAATGATC 58.990 43.478 0.00 0.00 0.00 2.92
90 91 3.758554 CACTCCCGAACCAAGAAAATGAT 59.241 43.478 0.00 0.00 0.00 2.45
91 92 3.146066 CACTCCCGAACCAAGAAAATGA 58.854 45.455 0.00 0.00 0.00 2.57
92 93 2.351738 GCACTCCCGAACCAAGAAAATG 60.352 50.000 0.00 0.00 0.00 2.32
93 94 1.886542 GCACTCCCGAACCAAGAAAAT 59.113 47.619 0.00 0.00 0.00 1.82
94 95 1.314730 GCACTCCCGAACCAAGAAAA 58.685 50.000 0.00 0.00 0.00 2.29
95 96 0.181587 TGCACTCCCGAACCAAGAAA 59.818 50.000 0.00 0.00 0.00 2.52
96 97 0.534203 GTGCACTCCCGAACCAAGAA 60.534 55.000 10.32 0.00 0.00 2.52
97 98 1.070786 GTGCACTCCCGAACCAAGA 59.929 57.895 10.32 0.00 0.00 3.02
98 99 1.966451 GGTGCACTCCCGAACCAAG 60.966 63.158 17.98 0.00 32.69 3.61
99 100 2.112297 GGTGCACTCCCGAACCAA 59.888 61.111 17.98 0.00 32.69 3.67
100 101 2.674563 CTTGGTGCACTCCCGAACCA 62.675 60.000 17.98 0.00 40.90 3.67
101 102 1.966451 CTTGGTGCACTCCCGAACC 60.966 63.158 17.98 0.00 0.00 3.62
102 103 1.227853 ACTTGGTGCACTCCCGAAC 60.228 57.895 17.98 0.00 0.00 3.95
103 104 1.227823 CACTTGGTGCACTCCCGAA 60.228 57.895 17.98 1.61 0.00 4.30
104 105 1.480212 ATCACTTGGTGCACTCCCGA 61.480 55.000 17.98 7.81 32.98 5.14
105 106 1.003355 ATCACTTGGTGCACTCCCG 60.003 57.895 17.98 5.66 32.98 5.14
106 107 1.589716 GCATCACTTGGTGCACTCCC 61.590 60.000 17.98 0.00 40.94 4.30
107 108 1.878775 GCATCACTTGGTGCACTCC 59.121 57.895 17.98 0.70 40.94 3.85
108 109 1.499056 CGCATCACTTGGTGCACTC 59.501 57.895 17.98 7.60 41.32 3.51
109 110 2.620112 GCGCATCACTTGGTGCACT 61.620 57.895 17.98 0.00 41.32 4.40
110 111 2.126734 GCGCATCACTTGGTGCAC 60.127 61.111 14.63 8.80 41.32 4.57
111 112 3.364441 GGCGCATCACTTGGTGCA 61.364 61.111 14.63 0.00 42.10 4.57
112 113 4.120331 GGGCGCATCACTTGGTGC 62.120 66.667 10.83 4.26 39.70 5.01
113 114 0.464373 ATAGGGCGCATCACTTGGTG 60.464 55.000 10.83 0.00 34.45 4.17
114 115 0.255890 AATAGGGCGCATCACTTGGT 59.744 50.000 10.83 0.00 0.00 3.67
115 116 0.947244 GAATAGGGCGCATCACTTGG 59.053 55.000 10.83 0.00 0.00 3.61
116 117 0.583438 CGAATAGGGCGCATCACTTG 59.417 55.000 10.83 0.00 0.00 3.16
117 118 0.532862 CCGAATAGGGCGCATCACTT 60.533 55.000 10.83 0.00 35.97 3.16
118 119 1.069765 CCGAATAGGGCGCATCACT 59.930 57.895 10.83 3.87 35.97 3.41
119 120 2.607892 GCCGAATAGGGCGCATCAC 61.608 63.158 10.83 0.00 44.40 3.06
120 121 2.280797 GCCGAATAGGGCGCATCA 60.281 61.111 10.83 0.00 44.40 3.07
127 128 2.111043 ATGTGGCGCCGAATAGGG 59.889 61.111 23.90 0.00 41.48 3.53
128 129 1.095228 AACATGTGGCGCCGAATAGG 61.095 55.000 23.90 11.88 44.97 2.57
129 130 0.027979 CAACATGTGGCGCCGAATAG 59.972 55.000 23.90 12.97 0.00 1.73
130 131 1.987704 GCAACATGTGGCGCCGAATA 61.988 55.000 23.90 8.17 0.00 1.75
131 132 2.876955 CAACATGTGGCGCCGAAT 59.123 55.556 23.90 15.25 0.00 3.34
132 133 4.036804 GCAACATGTGGCGCCGAA 62.037 61.111 23.90 13.29 0.00 4.30
138 139 1.135315 CTAGCACGCAACATGTGGC 59.865 57.895 15.73 15.73 37.80 5.01
139 140 0.955428 ACCTAGCACGCAACATGTGG 60.955 55.000 0.00 0.00 37.80 4.17
140 141 0.166597 CACCTAGCACGCAACATGTG 59.833 55.000 0.00 0.00 40.32 3.21
141 142 1.577328 GCACCTAGCACGCAACATGT 61.577 55.000 0.00 0.00 44.79 3.21
142 143 1.135315 GCACCTAGCACGCAACATG 59.865 57.895 0.00 0.00 44.79 3.21
143 144 3.578456 GCACCTAGCACGCAACAT 58.422 55.556 0.00 0.00 44.79 2.71
156 157 1.749258 GAAATCCCGAGGGTGCACC 60.749 63.158 28.57 28.57 40.67 5.01
157 158 1.026718 CAGAAATCCCGAGGGTGCAC 61.027 60.000 8.80 8.80 36.47 4.57
158 159 1.299648 CAGAAATCCCGAGGGTGCA 59.700 57.895 8.20 0.00 36.47 4.57
159 160 0.322546 AACAGAAATCCCGAGGGTGC 60.323 55.000 8.20 0.00 36.47 5.01
160 161 1.279271 AGAACAGAAATCCCGAGGGTG 59.721 52.381 8.20 1.12 36.47 4.61
161 162 1.279271 CAGAACAGAAATCCCGAGGGT 59.721 52.381 8.20 0.00 36.47 4.34
162 163 2.014068 GCAGAACAGAAATCCCGAGGG 61.014 57.143 0.65 0.65 0.00 4.30
163 164 1.339055 TGCAGAACAGAAATCCCGAGG 60.339 52.381 0.00 0.00 0.00 4.63
164 165 1.734465 GTGCAGAACAGAAATCCCGAG 59.266 52.381 0.00 0.00 0.00 4.63
165 166 1.610624 GGTGCAGAACAGAAATCCCGA 60.611 52.381 0.00 0.00 0.00 5.14
166 167 0.804989 GGTGCAGAACAGAAATCCCG 59.195 55.000 0.00 0.00 0.00 5.14
167 168 1.177401 GGGTGCAGAACAGAAATCCC 58.823 55.000 0.00 0.00 0.00 3.85
168 169 0.804989 CGGGTGCAGAACAGAAATCC 59.195 55.000 0.00 0.00 0.00 3.01
169 170 1.523758 ACGGGTGCAGAACAGAAATC 58.476 50.000 0.00 0.00 0.00 2.17
170 171 1.981256 AACGGGTGCAGAACAGAAAT 58.019 45.000 0.00 0.00 0.00 2.17
171 172 1.757682 AAACGGGTGCAGAACAGAAA 58.242 45.000 0.00 0.00 0.00 2.52
172 173 1.757682 AAAACGGGTGCAGAACAGAA 58.242 45.000 0.00 0.00 0.00 3.02
173 174 1.403679 CAAAAACGGGTGCAGAACAGA 59.596 47.619 0.00 0.00 0.00 3.41
174 175 1.535860 CCAAAAACGGGTGCAGAACAG 60.536 52.381 0.00 0.00 0.00 3.16
175 176 0.457851 CCAAAAACGGGTGCAGAACA 59.542 50.000 0.00 0.00 0.00 3.18
176 177 0.249280 CCCAAAAACGGGTGCAGAAC 60.249 55.000 0.00 0.00 41.83 3.01
177 178 1.395826 CCCCAAAAACGGGTGCAGAA 61.396 55.000 0.00 0.00 45.80 3.02
178 179 1.830408 CCCCAAAAACGGGTGCAGA 60.830 57.895 0.00 0.00 45.80 4.26
179 180 2.733945 CCCCAAAAACGGGTGCAG 59.266 61.111 0.00 0.00 45.80 4.41
184 185 2.488952 CAAATGAACCCCAAAAACGGG 58.511 47.619 0.00 0.00 46.94 5.28
185 186 2.158885 ACCAAATGAACCCCAAAAACGG 60.159 45.455 0.00 0.00 0.00 4.44
186 187 3.186702 ACCAAATGAACCCCAAAAACG 57.813 42.857 0.00 0.00 0.00 3.60
187 188 5.906113 AAAACCAAATGAACCCCAAAAAC 57.094 34.783 0.00 0.00 0.00 2.43
207 208 0.915364 ACCAAGCAAAGGGCCAAAAA 59.085 45.000 6.18 0.00 46.50 1.94
208 209 0.915364 AACCAAGCAAAGGGCCAAAA 59.085 45.000 6.18 0.00 46.50 2.44
209 210 0.915364 AAACCAAGCAAAGGGCCAAA 59.085 45.000 6.18 0.00 46.50 3.28
210 211 0.915364 AAAACCAAGCAAAGGGCCAA 59.085 45.000 6.18 0.00 46.50 4.52
211 212 0.467804 GAAAACCAAGCAAAGGGCCA 59.532 50.000 6.18 0.00 46.50 5.36
212 213 0.250295 GGAAAACCAAGCAAAGGGCC 60.250 55.000 0.00 0.00 46.50 5.80
213 214 0.250295 GGGAAAACCAAGCAAAGGGC 60.250 55.000 0.00 0.00 40.63 5.19
214 215 0.033366 CGGGAAAACCAAGCAAAGGG 59.967 55.000 0.00 0.00 40.22 3.95
215 216 1.000274 CTCGGGAAAACCAAGCAAAGG 60.000 52.381 0.00 0.00 40.22 3.11
216 217 1.000274 CCTCGGGAAAACCAAGCAAAG 60.000 52.381 0.00 0.00 40.22 2.77
217 218 1.036707 CCTCGGGAAAACCAAGCAAA 58.963 50.000 0.00 0.00 40.22 3.68
218 219 0.106419 ACCTCGGGAAAACCAAGCAA 60.106 50.000 0.00 0.00 40.22 3.91
219 220 0.106419 AACCTCGGGAAAACCAAGCA 60.106 50.000 0.00 0.00 40.22 3.91
220 221 1.037493 AAACCTCGGGAAAACCAAGC 58.963 50.000 0.00 0.00 40.22 4.01
221 222 2.223947 CCAAAACCTCGGGAAAACCAAG 60.224 50.000 0.00 0.00 40.22 3.61
222 223 1.757699 CCAAAACCTCGGGAAAACCAA 59.242 47.619 0.00 0.00 40.22 3.67
223 224 1.404843 CCAAAACCTCGGGAAAACCA 58.595 50.000 0.00 0.00 40.22 3.67
224 225 0.032952 GCCAAAACCTCGGGAAAACC 59.967 55.000 0.00 0.00 0.00 3.27
225 226 1.037493 AGCCAAAACCTCGGGAAAAC 58.963 50.000 0.00 0.00 0.00 2.43
226 227 1.036707 CAGCCAAAACCTCGGGAAAA 58.963 50.000 0.00 0.00 0.00 2.29
227 228 0.825840 CCAGCCAAAACCTCGGGAAA 60.826 55.000 0.00 0.00 0.00 3.13
228 229 1.228429 CCAGCCAAAACCTCGGGAA 60.228 57.895 0.00 0.00 0.00 3.97
229 230 2.002018 AACCAGCCAAAACCTCGGGA 62.002 55.000 0.00 0.00 0.00 5.14
230 231 1.112916 AAACCAGCCAAAACCTCGGG 61.113 55.000 0.00 0.00 0.00 5.14
231 232 0.750249 AAAACCAGCCAAAACCTCGG 59.250 50.000 0.00 0.00 0.00 4.63
232 233 2.595124 AAAAACCAGCCAAAACCTCG 57.405 45.000 0.00 0.00 0.00 4.63
248 249 5.688176 CGAAAAAGTAATGCTTCCCGAAAAA 59.312 36.000 0.00 0.00 36.17 1.94
249 250 5.216648 CGAAAAAGTAATGCTTCCCGAAAA 58.783 37.500 0.00 0.00 36.17 2.29
250 251 4.789784 CGAAAAAGTAATGCTTCCCGAAA 58.210 39.130 0.00 0.00 36.17 3.46
251 252 3.365565 GCGAAAAAGTAATGCTTCCCGAA 60.366 43.478 0.00 0.00 36.17 4.30
252 253 2.160813 GCGAAAAAGTAATGCTTCCCGA 59.839 45.455 0.00 0.00 36.17 5.14
253 254 2.515912 GCGAAAAAGTAATGCTTCCCG 58.484 47.619 0.00 0.00 36.17 5.14
254 255 2.160813 TCGCGAAAAAGTAATGCTTCCC 59.839 45.455 6.20 0.00 36.17 3.97
255 256 3.124636 TCTCGCGAAAAAGTAATGCTTCC 59.875 43.478 11.33 0.00 36.17 3.46
256 257 4.322101 TCTCGCGAAAAAGTAATGCTTC 57.678 40.909 11.33 0.00 36.17 3.86
257 258 4.712763 CTTCTCGCGAAAAAGTAATGCTT 58.287 39.130 11.33 0.00 39.52 3.91
258 259 3.424962 GCTTCTCGCGAAAAAGTAATGCT 60.425 43.478 23.88 0.00 0.00 3.79
259 260 2.840752 GCTTCTCGCGAAAAAGTAATGC 59.159 45.455 23.88 8.89 0.00 3.56
260 261 4.065423 TGCTTCTCGCGAAAAAGTAATG 57.935 40.909 23.88 6.37 43.27 1.90
261 262 4.946784 ATGCTTCTCGCGAAAAAGTAAT 57.053 36.364 23.88 17.51 43.27 1.89
262 263 4.201685 GCTATGCTTCTCGCGAAAAAGTAA 60.202 41.667 23.88 16.45 43.27 2.24
263 264 3.306166 GCTATGCTTCTCGCGAAAAAGTA 59.694 43.478 23.88 21.53 43.27 2.24
264 265 2.094417 GCTATGCTTCTCGCGAAAAAGT 59.906 45.455 23.88 13.01 43.27 2.66
265 266 2.094258 TGCTATGCTTCTCGCGAAAAAG 59.906 45.455 20.81 20.81 43.27 2.27
266 267 2.073056 TGCTATGCTTCTCGCGAAAAA 58.927 42.857 11.33 6.85 43.27 1.94
267 268 1.393539 GTGCTATGCTTCTCGCGAAAA 59.606 47.619 11.33 1.21 43.27 2.29
268 269 0.999406 GTGCTATGCTTCTCGCGAAA 59.001 50.000 11.33 6.90 43.27 3.46
269 270 0.108851 TGTGCTATGCTTCTCGCGAA 60.109 50.000 11.33 0.00 43.27 4.70
270 271 0.108851 TTGTGCTATGCTTCTCGCGA 60.109 50.000 9.26 9.26 43.27 5.87
271 272 0.025513 GTTGTGCTATGCTTCTCGCG 59.974 55.000 0.00 0.00 43.27 5.87
272 273 1.363744 AGTTGTGCTATGCTTCTCGC 58.636 50.000 0.00 0.00 39.77 5.03
284 285 2.813754 TCTTGTGGAAGCATAGTTGTGC 59.186 45.455 0.00 0.00 45.38 4.57
285 286 5.215160 GTTTCTTGTGGAAGCATAGTTGTG 58.785 41.667 0.00 0.00 35.62 3.33
286 287 4.887071 TGTTTCTTGTGGAAGCATAGTTGT 59.113 37.500 0.00 0.00 39.58 3.32
287 288 5.437289 TGTTTCTTGTGGAAGCATAGTTG 57.563 39.130 0.00 0.00 39.58 3.16
293 294 6.215121 CACATTTATGTTTCTTGTGGAAGCA 58.785 36.000 0.00 0.00 46.20 3.91
294 295 5.119125 GCACATTTATGTTTCTTGTGGAAGC 59.881 40.000 0.00 0.00 39.39 3.86
295 296 6.449698 AGCACATTTATGTTTCTTGTGGAAG 58.550 36.000 0.00 0.00 39.39 3.46
296 297 6.403866 AGCACATTTATGTTTCTTGTGGAA 57.596 33.333 0.00 0.00 39.39 3.53
297 298 6.265196 AGAAGCACATTTATGTTTCTTGTGGA 59.735 34.615 10.19 0.00 44.80 4.02
298 299 6.449698 AGAAGCACATTTATGTTTCTTGTGG 58.550 36.000 10.19 0.00 44.80 4.17
314 315 9.429359 TGTTCTTTTAAATTTTCAAGAAGCACA 57.571 25.926 18.16 13.43 36.23 4.57
326 327 9.171877 TGGAAGCACAAATGTTCTTTTAAATTT 57.828 25.926 0.18 0.00 31.92 1.82
327 328 8.729805 TGGAAGCACAAATGTTCTTTTAAATT 57.270 26.923 0.18 0.00 31.92 1.82
328 329 8.729805 TTGGAAGCACAAATGTTCTTTTAAAT 57.270 26.923 0.18 0.00 31.92 1.40
329 330 8.553459 TTTGGAAGCACAAATGTTCTTTTAAA 57.447 26.923 0.18 3.29 35.57 1.52
330 331 8.553459 TTTTGGAAGCACAAATGTTCTTTTAA 57.447 26.923 0.18 0.00 39.80 1.52
331 332 8.553459 TTTTTGGAAGCACAAATGTTCTTTTA 57.447 26.923 0.18 0.00 39.80 1.52
332 333 7.446001 TTTTTGGAAGCACAAATGTTCTTTT 57.554 28.000 0.18 0.00 39.80 2.27
383 385 1.199327 GTGCTTTTCTACTTTCGGGGC 59.801 52.381 0.00 0.00 0.00 5.80
385 387 3.564225 AGTTGTGCTTTTCTACTTTCGGG 59.436 43.478 0.00 0.00 0.00 5.14
386 388 4.813296 AGTTGTGCTTTTCTACTTTCGG 57.187 40.909 0.00 0.00 0.00 4.30
387 389 5.790495 GCATAGTTGTGCTTTTCTACTTTCG 59.210 40.000 0.00 0.00 41.82 3.46
466 472 8.669946 AACCAGAAAAGAAACAAAGACAAAAA 57.330 26.923 0.00 0.00 0.00 1.94
471 477 7.090808 ACAGAAACCAGAAAAGAAACAAAGAC 58.909 34.615 0.00 0.00 0.00 3.01
483 489 9.685828 CGGAAATAAAATAACAGAAACCAGAAA 57.314 29.630 0.00 0.00 0.00 2.52
486 492 7.599171 ACCGGAAATAAAATAACAGAAACCAG 58.401 34.615 9.46 0.00 0.00 4.00
487 493 7.527568 ACCGGAAATAAAATAACAGAAACCA 57.472 32.000 9.46 0.00 0.00 3.67
488 494 9.726232 GATACCGGAAATAAAATAACAGAAACC 57.274 33.333 9.46 0.00 0.00 3.27
489 495 9.726232 GGATACCGGAAATAAAATAACAGAAAC 57.274 33.333 9.46 0.00 0.00 2.78
490 496 9.463902 TGGATACCGGAAATAAAATAACAGAAA 57.536 29.630 9.46 0.00 0.00 2.52
491 497 9.463902 TTGGATACCGGAAATAAAATAACAGAA 57.536 29.630 9.46 0.00 0.00 3.02
492 498 9.635404 ATTGGATACCGGAAATAAAATAACAGA 57.365 29.630 9.46 0.00 0.00 3.41
493 499 9.677567 CATTGGATACCGGAAATAAAATAACAG 57.322 33.333 9.46 0.00 0.00 3.16
494 500 8.634444 CCATTGGATACCGGAAATAAAATAACA 58.366 33.333 9.46 0.00 0.00 2.41
495 501 8.635328 ACCATTGGATACCGGAAATAAAATAAC 58.365 33.333 9.46 0.00 0.00 1.89
498 504 6.836527 TCACCATTGGATACCGGAAATAAAAT 59.163 34.615 9.46 2.23 0.00 1.82
501 507 5.375283 TCACCATTGGATACCGGAAATAA 57.625 39.130 9.46 0.00 0.00 1.40
507 513 3.951037 TCATTTTCACCATTGGATACCGG 59.049 43.478 10.37 0.00 0.00 5.28
508 514 4.202010 GGTCATTTTCACCATTGGATACCG 60.202 45.833 10.37 0.00 33.63 4.02
528 534 4.333926 GCACCTTGAGTCTAAATCATGGTC 59.666 45.833 10.78 4.88 46.62 4.02
530 536 4.264253 TGCACCTTGAGTCTAAATCATGG 58.736 43.478 7.52 7.52 43.93 3.66
539 546 5.489792 TTTATCTCTTGCACCTTGAGTCT 57.510 39.130 0.00 0.00 0.00 3.24
542 549 7.149569 TGAATTTTATCTCTTGCACCTTGAG 57.850 36.000 0.00 0.00 0.00 3.02
543 550 7.707624 ATGAATTTTATCTCTTGCACCTTGA 57.292 32.000 0.00 0.00 0.00 3.02
571 578 9.822185 GCCCTTTTACATAGATGATTCATTTTT 57.178 29.630 0.00 0.00 0.00 1.94
582 589 7.175104 TGAGAGTTTTGCCCTTTTACATAGAT 58.825 34.615 0.00 0.00 0.00 1.98
583 590 6.539173 TGAGAGTTTTGCCCTTTTACATAGA 58.461 36.000 0.00 0.00 0.00 1.98
585 592 5.710099 CCTGAGAGTTTTGCCCTTTTACATA 59.290 40.000 0.00 0.00 0.00 2.29
586 593 4.524328 CCTGAGAGTTTTGCCCTTTTACAT 59.476 41.667 0.00 0.00 0.00 2.29
587 594 3.888930 CCTGAGAGTTTTGCCCTTTTACA 59.111 43.478 0.00 0.00 0.00 2.41
588 595 3.889538 ACCTGAGAGTTTTGCCCTTTTAC 59.110 43.478 0.00 0.00 0.00 2.01
589 596 4.178956 ACCTGAGAGTTTTGCCCTTTTA 57.821 40.909 0.00 0.00 0.00 1.52
591 598 2.755952 ACCTGAGAGTTTTGCCCTTT 57.244 45.000 0.00 0.00 0.00 3.11
592 599 2.553247 GCTACCTGAGAGTTTTGCCCTT 60.553 50.000 0.00 0.00 0.00 3.95
593 600 1.003696 GCTACCTGAGAGTTTTGCCCT 59.996 52.381 0.00 0.00 0.00 5.19
594 601 1.454201 GCTACCTGAGAGTTTTGCCC 58.546 55.000 0.00 0.00 0.00 5.36
595 602 1.079503 CGCTACCTGAGAGTTTTGCC 58.920 55.000 0.00 0.00 0.00 4.52
596 603 1.727335 GTCGCTACCTGAGAGTTTTGC 59.273 52.381 0.00 0.00 0.00 3.68
597 604 3.026630 TGTCGCTACCTGAGAGTTTTG 57.973 47.619 0.00 0.00 0.00 2.44
598 605 3.069729 ACTTGTCGCTACCTGAGAGTTTT 59.930 43.478 0.00 0.00 0.00 2.43
599 606 2.628657 ACTTGTCGCTACCTGAGAGTTT 59.371 45.455 0.00 0.00 0.00 2.66
600 607 2.240279 ACTTGTCGCTACCTGAGAGTT 58.760 47.619 0.00 0.00 0.00 3.01
608 615 0.882927 TGCACCAACTTGTCGCTACC 60.883 55.000 0.00 0.00 0.00 3.18
654 661 4.082125 CAAAGCTCACTCCCACCTTTTAT 58.918 43.478 0.00 0.00 0.00 1.40
657 664 1.215423 ACAAAGCTCACTCCCACCTTT 59.785 47.619 0.00 0.00 0.00 3.11
744 753 8.125448 GCTGAAGTAGTGGATGCTTTTAATAAG 58.875 37.037 0.00 0.00 33.51 1.73
754 763 0.253044 TGGGCTGAAGTAGTGGATGC 59.747 55.000 0.00 0.00 0.00 3.91
813 825 1.202582 CCGTCAAGGATCGTCAGAGTT 59.797 52.381 0.00 0.00 45.00 3.01
815 827 0.526524 GCCGTCAAGGATCGTCAGAG 60.527 60.000 0.00 0.00 45.00 3.35
844 856 0.107081 TGGTTTACTCGGTGGTGTGG 59.893 55.000 0.00 0.00 0.00 4.17
856 868 2.892852 GGGTTAGGGTTTGGTGGTTTAC 59.107 50.000 0.00 0.00 0.00 2.01
915 927 2.577059 CTAGGGTTTGAGCCGCGA 59.423 61.111 8.23 0.00 41.56 5.87
919 931 1.475930 GGAGATGCTAGGGTTTGAGCC 60.476 57.143 0.00 0.00 37.94 4.70
967 979 2.054453 GTTGGGGAGGATTGGCTGC 61.054 63.158 0.00 0.00 0.00 5.25
984 996 4.039092 ATGGCTGCGAGCTTGGGT 62.039 61.111 2.37 0.00 41.99 4.51
1431 1443 3.172106 TTGGGGTCCTTGCCGTCA 61.172 61.111 0.00 0.00 0.00 4.35
1512 1524 9.777297 ACAAATAATTACTGCCAAACAAGAATT 57.223 25.926 0.00 0.00 0.00 2.17
1588 1600 1.136305 TGCTATTACACGCCACTCTCC 59.864 52.381 0.00 0.00 0.00 3.71
1623 1635 8.375506 TCCCACATTCTACCTAGCTAATAATTG 58.624 37.037 0.00 0.00 0.00 2.32
1630 1642 5.138758 TCTTCCCACATTCTACCTAGCTA 57.861 43.478 0.00 0.00 0.00 3.32
1648 1668 9.160496 AGAACACTGAATCAACAGATAATCTTC 57.840 33.333 0.00 0.00 40.63 2.87
1671 1691 8.900781 ACAATCGTCTATAGTTACTAGCAAGAA 58.099 33.333 0.00 0.00 0.00 2.52
1674 1694 8.781196 CCTACAATCGTCTATAGTTACTAGCAA 58.219 37.037 0.00 0.00 0.00 3.91
1691 1711 3.317149 TCCACGGAATCTACCTACAATCG 59.683 47.826 0.00 0.00 0.00 3.34
1699 1719 3.536956 TCACAATCCACGGAATCTACC 57.463 47.619 0.00 0.00 0.00 3.18
1709 1729 7.174253 TCCTAACAATACAAGTTCACAATCCAC 59.826 37.037 0.00 0.00 0.00 4.02
1765 1785 9.950496 AAGAATACAGTGTGATCAGATAAAAGT 57.050 29.630 5.88 0.00 0.00 2.66
1821 1841 4.980590 TGTTACAATGGATTCATTCGCAC 58.019 39.130 0.00 0.00 41.29 5.34
1826 1846 8.752187 ACATAAAGCTGTTACAATGGATTCATT 58.248 29.630 0.00 0.00 43.79 2.57
1828 1848 7.701539 ACATAAAGCTGTTACAATGGATTCA 57.298 32.000 0.00 0.00 0.00 2.57
1936 1956 8.488668 TGAAGATATCACATCCATTCTCTCAAA 58.511 33.333 5.32 0.00 31.50 2.69
2006 2026 6.824305 AAAATAGTCTCACAATGGAACCAG 57.176 37.500 0.00 0.00 0.00 4.00
2297 2317 7.612677 ACTTCTCCGTATCAAAATACAAGACT 58.387 34.615 0.00 0.00 38.11 3.24
2309 2329 6.724893 TTCCATTCATACTTCTCCGTATCA 57.275 37.500 0.00 0.00 0.00 2.15
2319 2339 7.890127 TGTCTGAATTCCTTTCCATTCATACTT 59.110 33.333 2.27 0.00 38.45 2.24
2325 2345 5.653769 TCCATGTCTGAATTCCTTTCCATTC 59.346 40.000 2.27 0.00 33.04 2.67
2330 2350 7.554118 TGTAGAATCCATGTCTGAATTCCTTTC 59.446 37.037 2.27 0.00 34.72 2.62
2334 2354 7.500227 TCAATGTAGAATCCATGTCTGAATTCC 59.500 37.037 2.27 0.00 0.00 3.01
2388 2408 0.955428 TGGCTGTCGAAGGATGCAAC 60.955 55.000 0.00 0.00 0.00 4.17
2428 2456 5.128499 TCAAGTCTTTCAGAAAATTGGGCAA 59.872 36.000 12.12 0.00 0.00 4.52
2462 2490 4.400529 TCAAACAGTAGCAGTCAAGACA 57.599 40.909 2.72 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.