Multiple sequence alignment - TraesCS6B01G294400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G294400 chr6B 100.000 2195 0 0 1 2195 528622849 528620655 0.000000e+00 4054.0
1 TraesCS6B01G294400 chr6A 97.205 1610 37 3 588 2195 492706820 492705217 0.000000e+00 2717.0
2 TraesCS6B01G294400 chr6A 92.973 370 13 5 127 485 492707185 492706818 5.370000e-146 527.0
3 TraesCS6B01G294400 chr6A 95.122 41 2 0 1 41 492707379 492707339 5.060000e-07 65.8
4 TraesCS6B01G294400 chr6D 96.900 1613 39 4 588 2195 351112495 351114101 0.000000e+00 2691.0
5 TraesCS6B01G294400 chr6D 90.511 411 24 9 88 485 351112089 351112497 1.490000e-146 529.0
6 TraesCS6B01G294400 chr6D 95.122 41 2 0 1 41 351111569 351111609 5.060000e-07 65.8
7 TraesCS6B01G294400 chr2A 98.148 108 2 0 483 590 3757516 3757409 2.880000e-44 189.0
8 TraesCS6B01G294400 chr5A 98.131 107 2 0 483 589 706334497 706334603 1.030000e-43 187.0
9 TraesCS6B01G294400 chr5A 89.552 134 11 3 476 607 382564723 382564855 1.350000e-37 167.0
10 TraesCS6B01G294400 chr2B 96.396 111 4 0 483 593 793498697 793498807 1.340000e-42 183.0
11 TraesCS6B01G294400 chr7D 95.455 110 5 0 483 592 262472165 262472274 2.240000e-40 176.0
12 TraesCS6B01G294400 chr1D 95.455 110 5 0 483 592 186442515 186442406 2.240000e-40 176.0
13 TraesCS6B01G294400 chr1D 95.455 110 5 0 483 592 419809745 419809636 2.240000e-40 176.0
14 TraesCS6B01G294400 chr1B 93.333 120 6 2 483 600 438648049 438648168 2.240000e-40 176.0
15 TraesCS6B01G294400 chr3B 93.966 116 6 1 479 594 803868066 803868180 8.060000e-40 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G294400 chr6B 528620655 528622849 2194 True 4054.000000 4054 100.000000 1 2195 1 chr6B.!!$R1 2194
1 TraesCS6B01G294400 chr6A 492705217 492707379 2162 True 1103.266667 2717 95.100000 1 2195 3 chr6A.!!$R1 2194
2 TraesCS6B01G294400 chr6D 351111569 351114101 2532 False 1095.266667 2691 94.177667 1 2195 3 chr6D.!!$F1 2194

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
232 694 0.179 CCAGGATCTTCCCCTTCACG 59.821 60.0 0.0 0.0 37.19 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1247 1713 0.184933 TGCCTTTACCCAACTGCAGT 59.815 50.0 15.25 15.25 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 518 7.198306 ACTAATTTAGTTCTCCGTTGTTTGG 57.802 36.000 3.16 0.00 34.86 3.28
75 519 6.993902 ACTAATTTAGTTCTCCGTTGTTTGGA 59.006 34.615 3.16 0.00 34.86 3.53
76 520 5.684550 ATTTAGTTCTCCGTTGTTTGGAC 57.315 39.130 0.00 0.00 0.00 4.02
77 521 2.702592 AGTTCTCCGTTGTTTGGACA 57.297 45.000 0.00 0.00 0.00 4.02
81 525 5.127491 AGTTCTCCGTTGTTTGGACATTAA 58.873 37.500 0.00 0.00 35.29 1.40
82 526 5.768164 AGTTCTCCGTTGTTTGGACATTAAT 59.232 36.000 0.00 0.00 35.29 1.40
83 527 6.264518 AGTTCTCCGTTGTTTGGACATTAATT 59.735 34.615 0.00 0.00 35.29 1.40
84 528 6.642707 TCTCCGTTGTTTGGACATTAATTT 57.357 33.333 0.00 0.00 35.29 1.82
85 529 7.045126 TCTCCGTTGTTTGGACATTAATTTT 57.955 32.000 0.00 0.00 35.29 1.82
86 530 7.493367 TCTCCGTTGTTTGGACATTAATTTTT 58.507 30.769 0.00 0.00 35.29 1.94
104 553 6.651755 ATTTTTGAAGAATATGCTTTGCGG 57.348 33.333 0.00 0.00 0.00 5.69
115 564 1.202245 TGCTTTGCGGAACACAGAAAC 60.202 47.619 0.00 0.00 0.00 2.78
122 571 3.244422 TGCGGAACACAGAAACCTTCTAT 60.244 43.478 0.00 0.00 38.11 1.98
123 572 4.020928 TGCGGAACACAGAAACCTTCTATA 60.021 41.667 0.00 0.00 38.11 1.31
135 587 5.986004 AACCTTCTATAAACGCTGCATAC 57.014 39.130 0.00 0.00 0.00 2.39
158 612 7.023197 ACAATACGATGTTACTAAAATGCCC 57.977 36.000 0.00 0.00 0.00 5.36
178 632 4.729868 CCCTATGATGTTTAAAGGAGGGG 58.270 47.826 0.00 0.00 39.03 4.79
179 633 4.415512 CCCTATGATGTTTAAAGGAGGGGA 59.584 45.833 0.00 0.00 39.03 4.81
180 634 5.456763 CCCTATGATGTTTAAAGGAGGGGAG 60.457 48.000 0.00 0.00 39.03 4.30
181 635 5.369699 CCTATGATGTTTAAAGGAGGGGAGA 59.630 44.000 0.00 0.00 0.00 3.71
215 677 1.215912 CGCCATGATGCAAAAGCCA 59.784 52.632 0.00 0.00 0.00 4.75
223 685 2.756760 TGATGCAAAAGCCAGGATCTTC 59.243 45.455 0.00 0.00 34.21 2.87
232 694 0.179000 CCAGGATCTTCCCCTTCACG 59.821 60.000 0.00 0.00 37.19 4.35
236 698 2.642807 AGGATCTTCCCCTTCACGAAAA 59.357 45.455 0.00 0.00 37.19 2.29
280 742 4.651778 TGCTGATACAAATATGCCCCTAC 58.348 43.478 0.00 0.00 0.00 3.18
485 948 5.390885 GCATCATGTTCACGTTGTTGATACT 60.391 40.000 0.00 0.00 0.00 2.12
486 949 5.839262 TCATGTTCACGTTGTTGATACTC 57.161 39.130 0.00 0.00 0.00 2.59
487 950 4.688879 TCATGTTCACGTTGTTGATACTCC 59.311 41.667 0.00 0.00 0.00 3.85
488 951 3.395639 TGTTCACGTTGTTGATACTCCC 58.604 45.455 0.00 0.00 0.00 4.30
489 952 3.070446 TGTTCACGTTGTTGATACTCCCT 59.930 43.478 0.00 0.00 0.00 4.20
490 953 3.587797 TCACGTTGTTGATACTCCCTC 57.412 47.619 0.00 0.00 0.00 4.30
491 954 2.232941 TCACGTTGTTGATACTCCCTCC 59.767 50.000 0.00 0.00 0.00 4.30
492 955 2.028476 CACGTTGTTGATACTCCCTCCA 60.028 50.000 0.00 0.00 0.00 3.86
493 956 2.838202 ACGTTGTTGATACTCCCTCCAT 59.162 45.455 0.00 0.00 0.00 3.41
494 957 3.263425 ACGTTGTTGATACTCCCTCCATT 59.737 43.478 0.00 0.00 0.00 3.16
495 958 3.871594 CGTTGTTGATACTCCCTCCATTC 59.128 47.826 0.00 0.00 0.00 2.67
496 959 3.819564 TGTTGATACTCCCTCCATTCG 57.180 47.619 0.00 0.00 0.00 3.34
497 960 2.434336 TGTTGATACTCCCTCCATTCGG 59.566 50.000 0.00 0.00 0.00 4.30
498 961 2.698797 GTTGATACTCCCTCCATTCGGA 59.301 50.000 0.00 0.00 39.79 4.55
499 962 3.040655 TGATACTCCCTCCATTCGGAA 57.959 47.619 0.00 0.00 42.21 4.30
500 963 3.587498 TGATACTCCCTCCATTCGGAAT 58.413 45.455 0.00 0.00 42.21 3.01
501 964 3.973973 TGATACTCCCTCCATTCGGAATT 59.026 43.478 0.00 0.00 42.21 2.17
502 965 5.152193 TGATACTCCCTCCATTCGGAATTA 58.848 41.667 0.00 0.00 42.21 1.40
503 966 5.246203 TGATACTCCCTCCATTCGGAATTAG 59.754 44.000 0.00 2.04 42.21 1.73
504 967 3.385115 ACTCCCTCCATTCGGAATTAGT 58.615 45.455 0.00 0.00 42.21 2.24
505 968 3.780850 ACTCCCTCCATTCGGAATTAGTT 59.219 43.478 0.00 0.00 42.21 2.24
506 969 4.130118 CTCCCTCCATTCGGAATTAGTTG 58.870 47.826 0.00 0.00 42.21 3.16
507 970 3.521937 TCCCTCCATTCGGAATTAGTTGT 59.478 43.478 0.00 0.00 42.21 3.32
508 971 3.877508 CCCTCCATTCGGAATTAGTTGTC 59.122 47.826 0.00 0.00 42.21 3.18
509 972 3.555956 CCTCCATTCGGAATTAGTTGTCG 59.444 47.826 0.00 0.00 42.21 4.35
510 973 2.933906 TCCATTCGGAATTAGTTGTCGC 59.066 45.455 0.00 0.00 38.83 5.19
511 974 2.675844 CCATTCGGAATTAGTTGTCGCA 59.324 45.455 0.00 0.00 0.00 5.10
512 975 3.242413 CCATTCGGAATTAGTTGTCGCAG 60.242 47.826 0.00 0.00 0.00 5.18
513 976 3.306917 TTCGGAATTAGTTGTCGCAGA 57.693 42.857 0.00 0.00 0.00 4.26
514 977 3.306917 TCGGAATTAGTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
515 978 3.655486 TCGGAATTAGTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
516 979 4.250464 TCGGAATTAGTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
517 980 4.092821 TCGGAATTAGTTGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
518 981 4.092821 CGGAATTAGTTGTCGCAGAAATGA 59.907 41.667 0.00 0.00 39.69 2.57
519 982 5.390461 CGGAATTAGTTGTCGCAGAAATGAA 60.390 40.000 0.00 0.00 39.69 2.57
520 983 6.555315 GGAATTAGTTGTCGCAGAAATGAAT 58.445 36.000 0.00 0.00 39.69 2.57
521 984 6.470235 GGAATTAGTTGTCGCAGAAATGAATG 59.530 38.462 0.00 0.00 39.69 2.67
522 985 5.940192 TTAGTTGTCGCAGAAATGAATGT 57.060 34.783 0.00 0.00 39.69 2.71
523 986 7.609760 ATTAGTTGTCGCAGAAATGAATGTA 57.390 32.000 0.00 0.00 39.69 2.29
524 987 7.609760 TTAGTTGTCGCAGAAATGAATGTAT 57.390 32.000 0.00 0.00 39.69 2.29
525 988 6.111768 AGTTGTCGCAGAAATGAATGTATC 57.888 37.500 0.00 0.00 39.69 2.24
526 989 5.877012 AGTTGTCGCAGAAATGAATGTATCT 59.123 36.000 0.00 0.00 39.69 1.98
527 990 7.041721 AGTTGTCGCAGAAATGAATGTATCTA 58.958 34.615 0.00 0.00 39.69 1.98
528 991 7.223582 AGTTGTCGCAGAAATGAATGTATCTAG 59.776 37.037 0.00 0.00 39.69 2.43
529 992 6.805713 TGTCGCAGAAATGAATGTATCTAGA 58.194 36.000 0.00 0.00 39.69 2.43
530 993 7.436933 TGTCGCAGAAATGAATGTATCTAGAT 58.563 34.615 10.73 10.73 39.69 1.98
531 994 7.383300 TGTCGCAGAAATGAATGTATCTAGATG 59.617 37.037 15.79 0.00 39.69 2.90
532 995 7.383572 GTCGCAGAAATGAATGTATCTAGATGT 59.616 37.037 15.79 0.00 39.69 3.06
533 996 8.576442 TCGCAGAAATGAATGTATCTAGATGTA 58.424 33.333 15.79 4.44 0.00 2.29
534 997 9.363763 CGCAGAAATGAATGTATCTAGATGTAT 57.636 33.333 15.79 6.61 0.00 2.29
564 1027 9.606631 AGTTCTAAATACATCCATTTCTGAGAC 57.393 33.333 0.00 0.00 30.84 3.36
565 1028 9.383519 GTTCTAAATACATCCATTTCTGAGACA 57.616 33.333 0.00 0.00 30.84 3.41
566 1029 9.958180 TTCTAAATACATCCATTTCTGAGACAA 57.042 29.630 0.00 0.00 30.84 3.18
567 1030 9.605275 TCTAAATACATCCATTTCTGAGACAAG 57.395 33.333 0.00 0.00 30.84 3.16
568 1031 9.388506 CTAAATACATCCATTTCTGAGACAAGT 57.611 33.333 0.00 0.00 30.84 3.16
570 1033 9.739276 AAATACATCCATTTCTGAGACAAGTAA 57.261 29.630 0.00 0.00 0.00 2.24
571 1034 9.911788 AATACATCCATTTCTGAGACAAGTAAT 57.088 29.630 0.00 0.00 0.00 1.89
572 1035 9.911788 ATACATCCATTTCTGAGACAAGTAATT 57.088 29.630 0.00 0.00 0.00 1.40
573 1036 8.273780 ACATCCATTTCTGAGACAAGTAATTC 57.726 34.615 0.00 0.00 0.00 2.17
574 1037 7.884877 ACATCCATTTCTGAGACAAGTAATTCA 59.115 33.333 0.00 0.00 0.00 2.57
575 1038 7.912056 TCCATTTCTGAGACAAGTAATTCAG 57.088 36.000 0.00 0.00 38.67 3.02
576 1039 7.679783 TCCATTTCTGAGACAAGTAATTCAGA 58.320 34.615 0.00 0.00 43.00 3.27
580 1043 5.470368 TCTGAGACAAGTAATTCAGAACGG 58.530 41.667 0.89 0.00 42.08 4.44
581 1044 5.243060 TCTGAGACAAGTAATTCAGAACGGA 59.757 40.000 0.89 0.00 42.08 4.69
582 1045 5.470368 TGAGACAAGTAATTCAGAACGGAG 58.530 41.667 0.00 0.00 0.00 4.63
583 1046 4.822026 AGACAAGTAATTCAGAACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
584 1047 3.933332 GACAAGTAATTCAGAACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
585 1048 3.581332 ACAAGTAATTCAGAACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
586 1049 4.184629 CAAGTAATTCAGAACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
587 1050 3.442076 AGTAATTCAGAACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
588 1051 4.607239 AGTAATTCAGAACGGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
589 1052 3.889520 AATTCAGAACGGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
614 1077 3.063743 GCCTCCAAAATTCCGCCCG 62.064 63.158 0.00 0.00 0.00 6.13
746 1212 1.869767 GGCATGACCAGCTATCTTTCG 59.130 52.381 0.00 0.00 38.86 3.46
861 1327 2.202851 CTCGCCATCAGCTTCGCT 60.203 61.111 0.00 0.00 40.77 4.93
909 1375 4.496336 GCGGCAGCCTCCTGGATT 62.496 66.667 10.54 0.00 39.54 3.01
923 1389 2.527100 CTGGATTAACTCGTCGGTGAC 58.473 52.381 0.00 0.00 0.00 3.67
941 1407 1.338136 ACCCCCTTCACCGCTATCTG 61.338 60.000 0.00 0.00 0.00 2.90
1020 1486 8.818622 TCACTATGTACTTGTCAAGGTATAGT 57.181 34.615 21.01 21.01 35.41 2.12
1181 1647 2.039746 TCCGGAAAAGGAGAGCATTCAA 59.960 45.455 0.00 0.00 34.92 2.69
1246 1712 8.694394 GTCTGCAGAATTAAAGAAATGTCAAAC 58.306 33.333 20.19 0.00 0.00 2.93
1247 1713 8.412456 TCTGCAGAATTAAAGAAATGTCAAACA 58.588 29.630 15.67 0.00 0.00 2.83
1270 1738 2.703007 TGCAGTTGGGTAAAGGCAAAAT 59.297 40.909 0.00 0.00 0.00 1.82
1307 1775 1.273606 GTACAGGACTTGAGAGCAGCA 59.726 52.381 0.00 0.00 0.00 4.41
1340 1808 3.321111 GGTATCGGACATAGGAAGAAGCA 59.679 47.826 0.00 0.00 0.00 3.91
1358 1826 7.256756 AGAAGCAACATGACAATTATAGAGC 57.743 36.000 0.00 0.00 0.00 4.09
1469 1938 5.584442 TGCTGCAAAATCACATGATATCAC 58.416 37.500 7.78 0.00 33.73 3.06
1470 1939 5.125739 TGCTGCAAAATCACATGATATCACA 59.874 36.000 7.78 0.00 33.73 3.58
1672 2141 6.040955 TCAGTGCATAATCTAGTCCCTGTAAG 59.959 42.308 0.00 0.00 0.00 2.34
1769 2238 2.656560 AACTTACAGATTCGCGAGCT 57.343 45.000 9.59 8.44 0.00 4.09
1823 2292 3.056080 AGGAGGCCCATAGAAAAGCATA 58.944 45.455 0.00 0.00 33.88 3.14
1975 2444 4.552166 TTTTCAGTTTGCTAGTCACAGC 57.448 40.909 0.00 0.00 42.15 4.40
2000 2469 1.116536 TAGCACGTGAAGGGACACCA 61.117 55.000 22.23 0.00 40.13 4.17
2148 2617 5.345609 TCACATGCACAAATGAAAAATGC 57.654 34.783 0.00 0.00 36.81 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.494471 TGCTGCTCAAAATGAATCCAGG 59.506 45.455 0.00 0.00 0.00 4.45
10 11 3.192844 AGTGCTGCTCAAAATGAATCCAG 59.807 43.478 0.00 0.00 0.00 3.86
48 49 8.776470 CCAAACAACGGAGAACTAAATTAGTAA 58.224 33.333 6.04 0.00 38.26 2.24
49 50 8.149647 TCCAAACAACGGAGAACTAAATTAGTA 58.850 33.333 6.04 0.00 38.26 1.82
50 51 6.993902 TCCAAACAACGGAGAACTAAATTAGT 59.006 34.615 0.00 0.00 41.73 2.24
51 52 7.041644 TGTCCAAACAACGGAGAACTAAATTAG 60.042 37.037 0.00 0.00 31.65 1.73
65 509 8.812329 TCTTCAAAAATTAATGTCCAAACAACG 58.188 29.630 0.00 0.00 39.30 4.10
81 525 6.397272 TCCGCAAAGCATATTCTTCAAAAAT 58.603 32.000 0.00 0.00 0.00 1.82
82 526 5.777802 TCCGCAAAGCATATTCTTCAAAAA 58.222 33.333 0.00 0.00 0.00 1.94
83 527 5.384063 TCCGCAAAGCATATTCTTCAAAA 57.616 34.783 0.00 0.00 0.00 2.44
84 528 5.160641 GTTCCGCAAAGCATATTCTTCAAA 58.839 37.500 0.00 0.00 0.00 2.69
85 529 4.217334 TGTTCCGCAAAGCATATTCTTCAA 59.783 37.500 0.00 0.00 0.00 2.69
86 530 3.755905 TGTTCCGCAAAGCATATTCTTCA 59.244 39.130 0.00 0.00 0.00 3.02
104 553 6.147328 AGCGTTTATAGAAGGTTTCTGTGTTC 59.853 38.462 1.71 0.00 40.94 3.18
115 564 5.984233 TTGTATGCAGCGTTTATAGAAGG 57.016 39.130 0.00 0.00 0.00 3.46
122 571 4.806775 ACATCGTATTGTATGCAGCGTTTA 59.193 37.500 0.00 0.00 0.00 2.01
123 572 3.621268 ACATCGTATTGTATGCAGCGTTT 59.379 39.130 0.00 0.00 0.00 3.60
135 587 7.259290 AGGGCATTTTAGTAACATCGTATTG 57.741 36.000 0.00 0.00 0.00 1.90
158 612 6.500589 TCTCCCCTCCTTTAAACATCATAG 57.499 41.667 0.00 0.00 0.00 2.23
178 632 0.654683 GATGCACACAGCCGATTCTC 59.345 55.000 0.00 0.00 44.83 2.87
179 633 1.086067 CGATGCACACAGCCGATTCT 61.086 55.000 0.00 0.00 44.83 2.40
180 634 1.349627 CGATGCACACAGCCGATTC 59.650 57.895 0.00 0.00 44.83 2.52
181 635 2.753966 GCGATGCACACAGCCGATT 61.754 57.895 0.00 0.00 44.83 3.34
215 677 1.952621 TTCGTGAAGGGGAAGATCCT 58.047 50.000 0.00 0.00 36.57 3.24
280 742 2.223089 CCGCCCCTTACGAAATTAAACG 60.223 50.000 0.00 0.00 0.00 3.60
333 795 4.892934 TGTAACTTTGATTGGGCTCTTTGT 59.107 37.500 0.00 0.00 0.00 2.83
396 859 3.494398 CGCATATACTAGCCTTTGGTGGT 60.494 47.826 0.00 0.00 37.46 4.16
489 952 2.933906 GCGACAACTAATTCCGAATGGA 59.066 45.455 0.00 0.00 44.61 3.41
490 953 2.675844 TGCGACAACTAATTCCGAATGG 59.324 45.455 0.00 0.00 0.00 3.16
491 954 3.616821 TCTGCGACAACTAATTCCGAATG 59.383 43.478 0.00 0.00 0.00 2.67
492 955 3.857052 TCTGCGACAACTAATTCCGAAT 58.143 40.909 0.00 0.00 0.00 3.34
493 956 3.306917 TCTGCGACAACTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
494 957 3.306917 TTCTGCGACAACTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
495 958 4.092821 TCATTTCTGCGACAACTAATTCCG 59.907 41.667 0.00 0.00 0.00 4.30
496 959 5.545658 TCATTTCTGCGACAACTAATTCC 57.454 39.130 0.00 0.00 0.00 3.01
497 960 7.023575 ACATTCATTTCTGCGACAACTAATTC 58.976 34.615 0.00 0.00 0.00 2.17
498 961 6.913170 ACATTCATTTCTGCGACAACTAATT 58.087 32.000 0.00 0.00 0.00 1.40
499 962 6.500684 ACATTCATTTCTGCGACAACTAAT 57.499 33.333 0.00 0.00 0.00 1.73
500 963 5.940192 ACATTCATTTCTGCGACAACTAA 57.060 34.783 0.00 0.00 0.00 2.24
501 964 7.041721 AGATACATTCATTTCTGCGACAACTA 58.958 34.615 0.00 0.00 0.00 2.24
502 965 5.877012 AGATACATTCATTTCTGCGACAACT 59.123 36.000 0.00 0.00 0.00 3.16
503 966 6.111768 AGATACATTCATTTCTGCGACAAC 57.888 37.500 0.00 0.00 0.00 3.32
504 967 7.264947 TCTAGATACATTCATTTCTGCGACAA 58.735 34.615 0.00 0.00 0.00 3.18
505 968 6.805713 TCTAGATACATTCATTTCTGCGACA 58.194 36.000 0.00 0.00 0.00 4.35
506 969 7.383572 ACATCTAGATACATTCATTTCTGCGAC 59.616 37.037 4.54 0.00 0.00 5.19
507 970 7.436933 ACATCTAGATACATTCATTTCTGCGA 58.563 34.615 4.54 0.00 0.00 5.10
508 971 7.649370 ACATCTAGATACATTCATTTCTGCG 57.351 36.000 4.54 0.00 0.00 5.18
538 1001 9.606631 GTCTCAGAAATGGATGTATTTAGAACT 57.393 33.333 0.00 0.00 30.78 3.01
539 1002 9.383519 TGTCTCAGAAATGGATGTATTTAGAAC 57.616 33.333 0.00 0.00 30.78 3.01
540 1003 9.958180 TTGTCTCAGAAATGGATGTATTTAGAA 57.042 29.630 0.00 0.00 30.78 2.10
541 1004 9.605275 CTTGTCTCAGAAATGGATGTATTTAGA 57.395 33.333 0.00 0.00 30.78 2.10
542 1005 9.388506 ACTTGTCTCAGAAATGGATGTATTTAG 57.611 33.333 0.00 0.00 30.78 1.85
544 1007 9.739276 TTACTTGTCTCAGAAATGGATGTATTT 57.261 29.630 0.00 0.00 33.19 1.40
545 1008 9.911788 ATTACTTGTCTCAGAAATGGATGTATT 57.088 29.630 0.00 0.00 0.00 1.89
546 1009 9.911788 AATTACTTGTCTCAGAAATGGATGTAT 57.088 29.630 0.00 0.00 0.00 2.29
547 1010 9.383519 GAATTACTTGTCTCAGAAATGGATGTA 57.616 33.333 0.00 0.00 0.00 2.29
548 1011 7.884877 TGAATTACTTGTCTCAGAAATGGATGT 59.115 33.333 0.00 0.00 0.00 3.06
549 1012 8.272545 TGAATTACTTGTCTCAGAAATGGATG 57.727 34.615 0.00 0.00 0.00 3.51
550 1013 8.324306 TCTGAATTACTTGTCTCAGAAATGGAT 58.676 33.333 0.00 0.00 40.94 3.41
551 1014 7.679783 TCTGAATTACTTGTCTCAGAAATGGA 58.320 34.615 0.00 0.00 40.94 3.41
552 1015 7.912056 TCTGAATTACTTGTCTCAGAAATGG 57.088 36.000 0.00 0.00 40.94 3.16
557 1020 5.243060 TCCGTTCTGAATTACTTGTCTCAGA 59.757 40.000 0.00 0.00 41.89 3.27
558 1021 5.470368 TCCGTTCTGAATTACTTGTCTCAG 58.530 41.667 0.00 0.00 37.28 3.35
559 1022 5.462530 TCCGTTCTGAATTACTTGTCTCA 57.537 39.130 0.00 0.00 0.00 3.27
560 1023 4.865365 CCTCCGTTCTGAATTACTTGTCTC 59.135 45.833 0.00 0.00 0.00 3.36
561 1024 4.322801 CCCTCCGTTCTGAATTACTTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
562 1025 3.933332 CCCTCCGTTCTGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
563 1026 3.581332 TCCCTCCGTTCTGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
564 1027 4.184629 CTCCCTCCGTTCTGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
565 1028 3.838903 ACTCCCTCCGTTCTGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
566 1029 3.442076 ACTCCCTCCGTTCTGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
567 1030 3.889520 ACTCCCTCCGTTCTGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
568 1031 4.346730 TGTACTCCCTCCGTTCTGAATTA 58.653 43.478 0.00 0.00 0.00 1.40
569 1032 3.170717 TGTACTCCCTCCGTTCTGAATT 58.829 45.455 0.00 0.00 0.00 2.17
570 1033 2.816411 TGTACTCCCTCCGTTCTGAAT 58.184 47.619 0.00 0.00 0.00 2.57
571 1034 2.297698 TGTACTCCCTCCGTTCTGAA 57.702 50.000 0.00 0.00 0.00 3.02
572 1035 2.100197 CATGTACTCCCTCCGTTCTGA 58.900 52.381 0.00 0.00 0.00 3.27
573 1036 1.825474 ACATGTACTCCCTCCGTTCTG 59.175 52.381 0.00 0.00 0.00 3.02
574 1037 2.233305 ACATGTACTCCCTCCGTTCT 57.767 50.000 0.00 0.00 0.00 3.01
575 1038 3.737355 GCTTACATGTACTCCCTCCGTTC 60.737 52.174 4.68 0.00 0.00 3.95
576 1039 2.167900 GCTTACATGTACTCCCTCCGTT 59.832 50.000 4.68 0.00 0.00 4.44
577 1040 1.755380 GCTTACATGTACTCCCTCCGT 59.245 52.381 4.68 0.00 0.00 4.69
578 1041 1.068741 GGCTTACATGTACTCCCTCCG 59.931 57.143 4.68 0.00 0.00 4.63
579 1042 2.365941 GAGGCTTACATGTACTCCCTCC 59.634 54.545 23.06 12.20 33.08 4.30
580 1043 2.365941 GGAGGCTTACATGTACTCCCTC 59.634 54.545 24.36 24.36 41.41 4.30
581 1044 2.292918 TGGAGGCTTACATGTACTCCCT 60.293 50.000 26.46 21.03 45.53 4.20
582 1045 2.116238 TGGAGGCTTACATGTACTCCC 58.884 52.381 26.46 17.78 45.53 4.30
583 1046 3.906720 TTGGAGGCTTACATGTACTCC 57.093 47.619 24.36 24.36 46.14 3.85
584 1047 6.183360 GGAATTTTGGAGGCTTACATGTACTC 60.183 42.308 4.68 9.06 0.00 2.59
585 1048 5.652452 GGAATTTTGGAGGCTTACATGTACT 59.348 40.000 4.68 0.00 0.00 2.73
586 1049 5.448632 CGGAATTTTGGAGGCTTACATGTAC 60.449 44.000 4.68 0.00 0.00 2.90
587 1050 4.638421 CGGAATTTTGGAGGCTTACATGTA 59.362 41.667 0.08 0.08 0.00 2.29
588 1051 3.443681 CGGAATTTTGGAGGCTTACATGT 59.556 43.478 2.69 2.69 0.00 3.21
589 1052 3.734902 GCGGAATTTTGGAGGCTTACATG 60.735 47.826 0.00 0.00 0.00 3.21
614 1077 3.142174 GCTTTGCTATATCCTGACACCC 58.858 50.000 0.00 0.00 0.00 4.61
904 1370 1.203052 GGTCACCGACGAGTTAATCCA 59.797 52.381 0.00 0.00 32.65 3.41
909 1375 1.978617 GGGGGTCACCGACGAGTTA 60.979 63.158 0.00 0.00 41.60 2.24
923 1389 1.447643 CAGATAGCGGTGAAGGGGG 59.552 63.158 0.00 0.00 0.00 5.40
1020 1486 2.975489 AGAGAGGTCCAAGCTTCTCAAA 59.025 45.455 13.59 0.00 0.00 2.69
1025 1491 3.595173 GAAGAAGAGAGGTCCAAGCTTC 58.405 50.000 0.00 8.70 36.19 3.86
1246 1712 0.598065 GCCTTTACCCAACTGCAGTG 59.402 55.000 22.49 14.24 0.00 3.66
1247 1713 0.184933 TGCCTTTACCCAACTGCAGT 59.815 50.000 15.25 15.25 0.00 4.40
1270 1738 9.263446 AGTCCTGTACTTCTTGTTGGTAATATA 57.737 33.333 0.00 0.00 33.35 0.86
1307 1775 6.378564 CCTATGTCCGATACCACTGAGATATT 59.621 42.308 0.00 0.00 0.00 1.28
1358 1826 4.581824 AGCAATGTGGTGGCTATTTCTATG 59.418 41.667 0.00 0.00 35.82 2.23
1433 1902 8.444715 GTGATTTTGCAGCATTTGATATTTCAA 58.555 29.630 0.00 0.00 40.09 2.69
1469 1938 9.915629 AGACTACTGTTTGTTAACTAGATTCTG 57.084 33.333 7.22 0.00 35.24 3.02
1470 1939 9.915629 CAGACTACTGTTTGTTAACTAGATTCT 57.084 33.333 7.22 0.00 39.11 2.40
1769 2238 3.423539 ACAATGGCAGCAAGAGAACTA 57.576 42.857 0.00 0.00 0.00 2.24
1823 2292 1.007118 CACCAAGCCCCCTTTAGGAAT 59.993 52.381 0.00 0.00 38.24 3.01
1975 2444 1.204704 TCCCTTCACGTGCTATGAGTG 59.795 52.381 11.67 0.00 37.24 3.51
2000 2469 2.292323 ACGAGGGAAGTATCCTTGGTCT 60.292 50.000 0.00 0.00 39.10 3.85
2168 2637 3.742433 TTAGCCCCAACAACACAAATG 57.258 42.857 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.