Multiple sequence alignment - TraesCS6B01G286500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G286500 chr6B 100.000 2905 0 0 1 2905 516477780 516474876 0.000000e+00 5365.0
1 TraesCS6B01G286500 chr6B 97.358 265 5 1 2510 2774 328899645 328899383 1.590000e-122 449.0
2 TraesCS6B01G286500 chr6B 95.880 267 9 2 2510 2775 300031048 300031313 5.750000e-117 431.0
3 TraesCS6B01G286500 chr6B 86.869 198 25 1 2311 2508 218022669 218022865 1.360000e-53 220.0
4 TraesCS6B01G286500 chr6A 87.998 1608 120 40 941 2512 482080121 482078551 0.000000e+00 1832.0
5 TraesCS6B01G286500 chr6A 86.207 203 27 1 2311 2513 114330668 114330869 4.870000e-53 219.0
6 TraesCS6B01G286500 chr5A 97.921 914 13 4 1 911 419409235 419410145 0.000000e+00 1578.0
7 TraesCS6B01G286500 chr5A 88.710 62 7 0 2808 2869 576329808 576329747 3.100000e-10 76.8
8 TraesCS6B01G286500 chr6D 91.814 1075 61 12 950 2008 341999676 341998613 0.000000e+00 1472.0
9 TraesCS6B01G286500 chr6D 85.224 379 37 10 2141 2502 341998567 341998191 3.540000e-99 372.0
10 TraesCS6B01G286500 chr6D 86.829 205 23 3 1 202 407461210 407461413 2.910000e-55 226.0
11 TraesCS6B01G286500 chr6D 100.000 37 0 0 2869 2905 260054136 260054172 5.190000e-08 69.4
12 TraesCS6B01G286500 chr7B 84.159 928 103 21 13 911 648388412 648387500 0.000000e+00 859.0
13 TraesCS6B01G286500 chr7B 96.992 266 5 2 2510 2774 671899986 671899723 7.390000e-121 444.0
14 TraesCS6B01G286500 chr7B 85.567 194 26 2 2317 2509 628357701 628357893 4.910000e-48 202.0
15 TraesCS6B01G286500 chr7B 100.000 35 0 0 2871 2905 683975509 683975475 6.720000e-07 65.8
16 TraesCS6B01G286500 chr4D 88.456 719 73 8 205 918 503552221 503552934 0.000000e+00 859.0
17 TraesCS6B01G286500 chr4D 85.366 205 24 4 1 202 503551981 503552182 1.060000e-49 207.0
18 TraesCS6B01G286500 chr1A 87.414 723 75 11 201 911 100000849 100000131 0.000000e+00 817.0
19 TraesCS6B01G286500 chr1A 90.244 451 38 4 464 910 53999012 53998564 4.170000e-163 584.0
20 TraesCS6B01G286500 chr1A 88.421 95 11 0 2775 2869 511413277 511413371 6.580000e-22 115.0
21 TraesCS6B01G286500 chr1A 87.368 95 12 0 2775 2869 548668481 548668575 3.060000e-20 110.0
22 TraesCS6B01G286500 chr5B 88.006 667 61 14 254 910 697234343 697235000 0.000000e+00 771.0
23 TraesCS6B01G286500 chr2D 86.582 708 75 13 205 912 633706436 633705749 0.000000e+00 763.0
24 TraesCS6B01G286500 chr2D 87.076 472 54 6 1 468 305908318 305907850 7.130000e-146 527.0
25 TraesCS6B01G286500 chr2D 89.268 205 18 3 1 202 633706680 633706477 1.340000e-63 254.0
26 TraesCS6B01G286500 chr2D 100.000 28 0 0 2775 2802 10324319 10324292 5.000000e-03 52.8
27 TraesCS6B01G286500 chrUn 83.757 708 95 10 216 911 340506063 340505364 0.000000e+00 652.0
28 TraesCS6B01G286500 chr3D 82.555 728 83 21 201 910 324612536 324611835 4.140000e-168 601.0
29 TraesCS6B01G286500 chr3D 82.393 727 90 23 201 911 199250241 199250945 1.490000e-167 599.0
30 TraesCS6B01G286500 chr3D 100.000 29 0 0 2776 2804 520712038 520712010 1.000000e-03 54.7
31 TraesCS6B01G286500 chr1B 87.838 518 53 3 412 922 78721321 78721835 1.490000e-167 599.0
32 TraesCS6B01G286500 chr1B 95.911 269 9 1 2510 2778 447622930 447623196 4.450000e-118 435.0
33 TraesCS6B01G286500 chr1B 83.880 366 48 8 1 360 48990805 48990445 3.590000e-89 339.0
34 TraesCS6B01G286500 chr1B 97.297 37 1 0 2869 2905 433594810 433594846 2.420000e-06 63.9
35 TraesCS6B01G286500 chr4B 87.819 509 52 4 412 912 3249754 3250260 3.220000e-164 588.0
36 TraesCS6B01G286500 chr4B 82.993 588 81 9 201 775 518626675 518626094 5.550000e-142 514.0
37 TraesCS6B01G286500 chr4B 95.849 265 11 0 2510 2774 236975536 236975272 2.070000e-116 429.0
38 TraesCS6B01G286500 chr4B 84.951 206 29 2 2305 2509 70563429 70563633 1.060000e-49 207.0
39 TraesCS6B01G286500 chr7D 88.793 464 43 6 454 911 563675678 563675218 7.030000e-156 560.0
40 TraesCS6B01G286500 chr3B 94.346 283 12 3 2499 2780 700775251 700774972 5.750000e-117 431.0
41 TraesCS6B01G286500 chr3B 94.203 276 14 2 2507 2781 650691850 650691576 1.240000e-113 420.0
42 TraesCS6B01G286500 chr3B 100.000 37 0 0 2869 2905 486619721 486619757 5.190000e-08 69.4
43 TraesCS6B01G286500 chr2B 95.238 273 12 1 2502 2774 439331593 439331864 5.750000e-117 431.0
44 TraesCS6B01G286500 chr2B 93.885 278 15 2 2504 2780 419338802 419338526 4.480000e-113 418.0
45 TraesCS6B01G286500 chr2B 85.492 193 28 0 2317 2509 161148514 161148706 4.910000e-48 202.0
46 TraesCS6B01G286500 chr2B 100.000 37 0 0 2869 2905 403560473 403560437 5.190000e-08 69.4
47 TraesCS6B01G286500 chr3A 80.749 561 76 20 1 539 703174592 703175142 2.690000e-110 409.0
48 TraesCS6B01G286500 chr5D 87.755 196 22 2 2313 2508 134146535 134146728 8.100000e-56 228.0
49 TraesCS6B01G286500 chr5D 84.878 205 27 4 1 202 168491534 168491331 1.360000e-48 204.0
50 TraesCS6B01G286500 chr7A 86.458 192 24 2 2319 2509 73733137 73733327 2.930000e-50 209.0
51 TraesCS6B01G286500 chr1D 83.902 205 30 2 1 202 446734660 446734456 2.950000e-45 193.0
52 TraesCS6B01G286500 chr4A 92.208 77 6 0 2793 2869 594717782 594717706 3.060000e-20 110.0
53 TraesCS6B01G286500 chr4A 90.909 77 7 0 2793 2869 563359316 563359392 1.420000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G286500 chr6B 516474876 516477780 2904 True 5365.0 5365 100.000 1 2905 1 chr6B.!!$R2 2904
1 TraesCS6B01G286500 chr6A 482078551 482080121 1570 True 1832.0 1832 87.998 941 2512 1 chr6A.!!$R1 1571
2 TraesCS6B01G286500 chr5A 419409235 419410145 910 False 1578.0 1578 97.921 1 911 1 chr5A.!!$F1 910
3 TraesCS6B01G286500 chr6D 341998191 341999676 1485 True 922.0 1472 88.519 950 2502 2 chr6D.!!$R1 1552
4 TraesCS6B01G286500 chr7B 648387500 648388412 912 True 859.0 859 84.159 13 911 1 chr7B.!!$R1 898
5 TraesCS6B01G286500 chr4D 503551981 503552934 953 False 533.0 859 86.911 1 918 2 chr4D.!!$F1 917
6 TraesCS6B01G286500 chr1A 100000131 100000849 718 True 817.0 817 87.414 201 911 1 chr1A.!!$R2 710
7 TraesCS6B01G286500 chr5B 697234343 697235000 657 False 771.0 771 88.006 254 910 1 chr5B.!!$F1 656
8 TraesCS6B01G286500 chr2D 633705749 633706680 931 True 508.5 763 87.925 1 912 2 chr2D.!!$R3 911
9 TraesCS6B01G286500 chrUn 340505364 340506063 699 True 652.0 652 83.757 216 911 1 chrUn.!!$R1 695
10 TraesCS6B01G286500 chr3D 324611835 324612536 701 True 601.0 601 82.555 201 910 1 chr3D.!!$R1 709
11 TraesCS6B01G286500 chr3D 199250241 199250945 704 False 599.0 599 82.393 201 911 1 chr3D.!!$F1 710
12 TraesCS6B01G286500 chr1B 78721321 78721835 514 False 599.0 599 87.838 412 922 1 chr1B.!!$F1 510
13 TraesCS6B01G286500 chr4B 3249754 3250260 506 False 588.0 588 87.819 412 912 1 chr4B.!!$F1 500
14 TraesCS6B01G286500 chr4B 518626094 518626675 581 True 514.0 514 82.993 201 775 1 chr4B.!!$R2 574
15 TraesCS6B01G286500 chr3A 703174592 703175142 550 False 409.0 409 80.749 1 539 1 chr3A.!!$F1 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
957 1095 0.106419 ACATCCTCTCCTCCTCGTCC 60.106 60.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2691 2879 0.110056 GCATTGAGTTGCACCACTCG 60.11 55.0 12.68 1.89 45.53 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
462 528 1.979155 TGTGGGCACGAGAGAGAGG 60.979 63.158 0.00 0.00 0.00 3.69
472 555 2.158667 ACGAGAGAGAGGGAGAGGATTC 60.159 54.545 0.00 0.00 0.00 2.52
651 766 9.420551 GAACCATTTACTATAGAATTAGGACCG 57.579 37.037 6.78 0.00 0.00 4.79
912 1050 2.354704 CCTCCGGTGCATTTAACTCTCA 60.355 50.000 0.00 0.00 0.00 3.27
914 1052 4.442893 CCTCCGGTGCATTTAACTCTCATA 60.443 45.833 0.00 0.00 0.00 2.15
915 1053 5.290493 TCCGGTGCATTTAACTCTCATAT 57.710 39.130 0.00 0.00 0.00 1.78
916 1054 6.413783 TCCGGTGCATTTAACTCTCATATA 57.586 37.500 0.00 0.00 0.00 0.86
917 1055 7.004555 TCCGGTGCATTTAACTCTCATATAT 57.995 36.000 0.00 0.00 0.00 0.86
918 1056 8.129496 TCCGGTGCATTTAACTCTCATATATA 57.871 34.615 0.00 0.00 0.00 0.86
919 1057 8.758829 TCCGGTGCATTTAACTCTCATATATAT 58.241 33.333 0.00 0.00 0.00 0.86
920 1058 8.820933 CCGGTGCATTTAACTCTCATATATATG 58.179 37.037 15.47 15.47 35.04 1.78
921 1059 9.371136 CGGTGCATTTAACTCTCATATATATGT 57.629 33.333 19.78 5.52 35.26 2.29
950 1088 9.860650 ATATATACAGACATACATCCTCTCCTC 57.139 37.037 0.00 0.00 0.00 3.71
951 1089 3.571590 ACAGACATACATCCTCTCCTCC 58.428 50.000 0.00 0.00 0.00 4.30
952 1090 3.206412 ACAGACATACATCCTCTCCTCCT 59.794 47.826 0.00 0.00 0.00 3.69
953 1091 3.826157 CAGACATACATCCTCTCCTCCTC 59.174 52.174 0.00 0.00 0.00 3.71
954 1092 2.817258 GACATACATCCTCTCCTCCTCG 59.183 54.545 0.00 0.00 0.00 4.63
955 1093 2.175931 ACATACATCCTCTCCTCCTCGT 59.824 50.000 0.00 0.00 0.00 4.18
956 1094 2.642154 TACATCCTCTCCTCCTCGTC 57.358 55.000 0.00 0.00 0.00 4.20
957 1095 0.106419 ACATCCTCTCCTCCTCGTCC 60.106 60.000 0.00 0.00 0.00 4.79
958 1096 0.825840 CATCCTCTCCTCCTCGTCCC 60.826 65.000 0.00 0.00 0.00 4.46
959 1097 2.346284 ATCCTCTCCTCCTCGTCCCG 62.346 65.000 0.00 0.00 0.00 5.14
960 1098 3.213402 CTCTCCTCCTCGTCCCGC 61.213 72.222 0.00 0.00 0.00 6.13
961 1099 4.816984 TCTCCTCCTCGTCCCGCC 62.817 72.222 0.00 0.00 0.00 6.13
971 1109 4.337060 GTCCCGCCCGCAACAAAC 62.337 66.667 0.00 0.00 0.00 2.93
1006 1144 2.892334 GCAGCCTGCAACGTTCGAA 61.892 57.895 12.82 0.00 44.26 3.71
1007 1145 1.868997 CAGCCTGCAACGTTCGAAT 59.131 52.632 0.00 0.00 0.00 3.34
1449 1597 3.077556 CGCTCCCACCTACTGCCT 61.078 66.667 0.00 0.00 0.00 4.75
1599 1753 2.913054 ATCTCGACCGGCTGCATGTG 62.913 60.000 0.00 0.00 0.00 3.21
1621 1779 8.637196 TGTGTATTTAATGTGGGTTTACATCA 57.363 30.769 0.00 0.00 40.24 3.07
1631 1789 7.537596 TGTGGGTTTACATCATCTCAAAATT 57.462 32.000 0.00 0.00 0.00 1.82
1671 1831 2.729028 ATTAGGGCGCCACTTTGTAT 57.271 45.000 30.85 8.15 0.00 2.29
1672 1832 3.849563 ATTAGGGCGCCACTTTGTATA 57.150 42.857 30.85 3.73 0.00 1.47
1673 1833 2.902705 TAGGGCGCCACTTTGTATAG 57.097 50.000 30.85 0.00 0.00 1.31
1759 1919 5.745227 AGGATTCTTTGGTCGAACATATGT 58.255 37.500 2.76 1.41 0.00 2.29
1762 1922 6.537301 GGATTCTTTGGTCGAACATATGTGTA 59.463 38.462 9.63 0.00 37.67 2.90
1763 1923 6.715344 TTCTTTGGTCGAACATATGTGTAC 57.285 37.500 9.63 7.91 37.67 2.90
1765 1925 7.160547 TCTTTGGTCGAACATATGTGTACTA 57.839 36.000 9.63 3.48 37.67 1.82
1767 1927 4.928601 TGGTCGAACATATGTGTACTAGC 58.071 43.478 9.63 6.87 37.67 3.42
1774 1934 5.080969 ACATATGTGTACTAGCGTTTGGT 57.919 39.130 7.78 0.00 36.63 3.67
1814 1974 1.032014 ACAGCTCCAAAACGCATGTT 58.968 45.000 0.00 0.00 40.98 2.71
1840 2000 4.062991 GTTCGACTTGTACAATCCCAGTT 58.937 43.478 9.13 0.00 0.00 3.16
1975 2140 0.673333 CAGTGGCCAATAGTGCGTGA 60.673 55.000 7.24 0.00 0.00 4.35
2023 2188 4.000988 CACATTCCGCACCTTAGTTAAGT 58.999 43.478 0.00 0.00 0.00 2.24
2034 2199 6.704937 GCACCTTAGTTAAGTCTACACAGTTT 59.295 38.462 0.00 0.00 0.00 2.66
2087 2252 8.715190 TTGATTTTTAGCCCTATATAAACCCC 57.285 34.615 0.00 0.00 0.00 4.95
2089 2254 8.290277 TGATTTTTAGCCCTATATAAACCCCAA 58.710 33.333 0.00 0.00 0.00 4.12
2090 2255 7.901283 TTTTTAGCCCTATATAAACCCCAAC 57.099 36.000 0.00 0.00 0.00 3.77
2135 2300 7.781548 GGTATTAAGACCGAACATACAACAT 57.218 36.000 2.98 0.00 0.00 2.71
2136 2301 8.876275 GGTATTAAGACCGAACATACAACATA 57.124 34.615 2.98 0.00 0.00 2.29
2205 2377 1.021968 GTCACCACACAACAGGAACC 58.978 55.000 0.00 0.00 0.00 3.62
2206 2378 0.621082 TCACCACACAACAGGAACCA 59.379 50.000 0.00 0.00 0.00 3.67
2207 2379 1.004862 TCACCACACAACAGGAACCAA 59.995 47.619 0.00 0.00 0.00 3.67
2208 2380 1.134175 CACCACACAACAGGAACCAAC 59.866 52.381 0.00 0.00 0.00 3.77
2209 2381 0.380378 CCACACAACAGGAACCAACG 59.620 55.000 0.00 0.00 0.00 4.10
2210 2382 0.380378 CACACAACAGGAACCAACGG 59.620 55.000 0.00 0.00 0.00 4.44
2211 2383 0.750182 ACACAACAGGAACCAACGGG 60.750 55.000 0.00 0.00 41.29 5.28
2212 2384 0.464735 CACAACAGGAACCAACGGGA 60.465 55.000 0.00 0.00 38.05 5.14
2214 2386 0.951558 CAACAGGAACCAACGGGAAG 59.048 55.000 0.00 0.00 38.05 3.46
2221 2404 1.071857 GAACCAACGGGAAGAACCTCT 59.928 52.381 0.00 0.00 38.98 3.69
2263 2446 3.010584 ACTGCTGGTTTACATGGGAAGAT 59.989 43.478 0.00 0.00 0.00 2.40
2344 2532 2.472059 ATATGCCCGTGCGTTGCAG 61.472 57.895 10.69 0.00 40.08 4.41
2402 2590 6.072728 TGAGAATTATACGTGCAAGCAAAACT 60.073 34.615 0.00 0.00 0.00 2.66
2414 2602 1.067915 AGCAAAACTTTGTGTGCACGT 60.068 42.857 13.13 0.00 40.24 4.49
2417 2605 2.983136 CAAAACTTTGTGTGCACGTCAA 59.017 40.909 18.73 18.73 33.59 3.18
2432 2620 4.378459 GCACGTCAAGAAGGAACATTTAGG 60.378 45.833 0.00 0.00 0.00 2.69
2447 2635 0.766131 TTAGGTTCTGGGTTTCGCCA 59.234 50.000 0.00 0.00 39.65 5.69
2449 2637 0.988832 AGGTTCTGGGTTTCGCCATA 59.011 50.000 0.00 0.00 39.65 2.74
2478 2666 4.809426 AGTAATCAATCCGCTAACTTTCCG 59.191 41.667 0.00 0.00 0.00 4.30
2502 2690 5.887214 TCATTGATCGAGGGGATTTAAGA 57.113 39.130 0.00 0.00 34.82 2.10
2503 2691 6.247229 TCATTGATCGAGGGGATTTAAGAA 57.753 37.500 0.00 0.00 34.82 2.52
2504 2692 6.841601 TCATTGATCGAGGGGATTTAAGAAT 58.158 36.000 0.00 0.00 34.82 2.40
2512 2700 8.446599 TCGAGGGGATTTAAGAATTTTGATAC 57.553 34.615 0.00 0.00 0.00 2.24
2513 2701 8.272173 TCGAGGGGATTTAAGAATTTTGATACT 58.728 33.333 0.00 0.00 0.00 2.12
2514 2702 8.560374 CGAGGGGATTTAAGAATTTTGATACTC 58.440 37.037 0.00 0.00 0.00 2.59
2515 2703 8.768501 AGGGGATTTAAGAATTTTGATACTCC 57.231 34.615 0.00 0.00 0.00 3.85
2516 2704 7.785028 AGGGGATTTAAGAATTTTGATACTCCC 59.215 37.037 0.00 0.00 0.00 4.30
2517 2705 7.785028 GGGGATTTAAGAATTTTGATACTCCCT 59.215 37.037 0.00 0.00 0.00 4.20
2518 2706 8.851145 GGGATTTAAGAATTTTGATACTCCCTC 58.149 37.037 0.00 0.00 0.00 4.30
2519 2707 8.851145 GGATTTAAGAATTTTGATACTCCCTCC 58.149 37.037 0.00 0.00 0.00 4.30
2520 2708 9.408648 GATTTAAGAATTTTGATACTCCCTCCA 57.591 33.333 0.00 0.00 0.00 3.86
2521 2709 9.942526 ATTTAAGAATTTTGATACTCCCTCCAT 57.057 29.630 0.00 0.00 0.00 3.41
2522 2710 9.768215 TTTAAGAATTTTGATACTCCCTCCATT 57.232 29.630 0.00 0.00 0.00 3.16
2523 2711 7.888250 AAGAATTTTGATACTCCCTCCATTC 57.112 36.000 0.00 0.00 0.00 2.67
2524 2712 6.368805 AGAATTTTGATACTCCCTCCATTCC 58.631 40.000 0.00 0.00 0.00 3.01
2525 2713 6.161170 AGAATTTTGATACTCCCTCCATTCCT 59.839 38.462 0.00 0.00 0.00 3.36
2526 2714 7.350921 AGAATTTTGATACTCCCTCCATTCCTA 59.649 37.037 0.00 0.00 0.00 2.94
2527 2715 6.901615 TTTTGATACTCCCTCCATTCCTAA 57.098 37.500 0.00 0.00 0.00 2.69
2528 2716 6.901615 TTTGATACTCCCTCCATTCCTAAA 57.098 37.500 0.00 0.00 0.00 1.85
2529 2717 7.465900 TTTGATACTCCCTCCATTCCTAAAT 57.534 36.000 0.00 0.00 0.00 1.40
2530 2718 8.575736 TTTGATACTCCCTCCATTCCTAAATA 57.424 34.615 0.00 0.00 0.00 1.40
2531 2719 8.757307 TTGATACTCCCTCCATTCCTAAATAT 57.243 34.615 0.00 0.00 0.00 1.28
2532 2720 9.852784 TTGATACTCCCTCCATTCCTAAATATA 57.147 33.333 0.00 0.00 0.00 0.86
2533 2721 9.494055 TGATACTCCCTCCATTCCTAAATATAG 57.506 37.037 0.00 0.00 0.00 1.31
2552 2740 8.459911 AATATAGGGTGTATAGTTTTTGGCAC 57.540 34.615 0.00 0.00 0.00 5.01
2553 2741 3.078837 AGGGTGTATAGTTTTTGGCACG 58.921 45.455 0.00 0.00 0.00 5.34
2554 2742 2.162809 GGGTGTATAGTTTTTGGCACGG 59.837 50.000 0.00 0.00 0.00 4.94
2555 2743 3.075884 GGTGTATAGTTTTTGGCACGGA 58.924 45.455 0.00 0.00 0.00 4.69
2556 2744 3.502979 GGTGTATAGTTTTTGGCACGGAA 59.497 43.478 0.00 0.00 0.00 4.30
2557 2745 4.023021 GGTGTATAGTTTTTGGCACGGAAA 60.023 41.667 0.00 0.00 0.00 3.13
2558 2746 5.336134 GGTGTATAGTTTTTGGCACGGAAAT 60.336 40.000 0.00 0.00 0.00 2.17
2559 2747 6.153756 GTGTATAGTTTTTGGCACGGAAATT 58.846 36.000 0.00 0.00 0.00 1.82
2560 2748 7.306953 GTGTATAGTTTTTGGCACGGAAATTA 58.693 34.615 0.00 0.00 0.00 1.40
2561 2749 7.808856 GTGTATAGTTTTTGGCACGGAAATTAA 59.191 33.333 0.00 0.00 0.00 1.40
2562 2750 8.358148 TGTATAGTTTTTGGCACGGAAATTAAA 58.642 29.630 0.00 0.00 0.00 1.52
2563 2751 7.883229 ATAGTTTTTGGCACGGAAATTAAAG 57.117 32.000 0.00 0.00 0.00 1.85
2564 2752 5.908341 AGTTTTTGGCACGGAAATTAAAGA 58.092 33.333 0.00 0.00 0.00 2.52
2565 2753 6.342111 AGTTTTTGGCACGGAAATTAAAGAA 58.658 32.000 0.00 0.00 0.00 2.52
2566 2754 6.256975 AGTTTTTGGCACGGAAATTAAAGAAC 59.743 34.615 0.00 0.00 0.00 3.01
2567 2755 3.546002 TGGCACGGAAATTAAAGAACG 57.454 42.857 0.00 0.00 0.00 3.95
2568 2756 2.247637 GGCACGGAAATTAAAGAACGC 58.752 47.619 0.00 0.00 0.00 4.84
2569 2757 2.350964 GGCACGGAAATTAAAGAACGCA 60.351 45.455 0.00 0.00 0.00 5.24
2570 2758 2.655001 GCACGGAAATTAAAGAACGCAC 59.345 45.455 0.00 0.00 0.00 5.34
2571 2759 3.850374 GCACGGAAATTAAAGAACGCACA 60.850 43.478 0.00 0.00 0.00 4.57
2572 2760 4.472286 CACGGAAATTAAAGAACGCACAT 58.528 39.130 0.00 0.00 0.00 3.21
2573 2761 4.320690 CACGGAAATTAAAGAACGCACATG 59.679 41.667 0.00 0.00 0.00 3.21
2574 2762 3.851403 CGGAAATTAAAGAACGCACATGG 59.149 43.478 0.00 0.00 0.00 3.66
2575 2763 4.378978 CGGAAATTAAAGAACGCACATGGA 60.379 41.667 0.00 0.00 0.00 3.41
2576 2764 5.095490 GGAAATTAAAGAACGCACATGGAG 58.905 41.667 0.00 0.00 0.00 3.86
2577 2765 4.701956 AATTAAAGAACGCACATGGAGG 57.298 40.909 0.00 0.00 0.00 4.30
2578 2766 3.410631 TTAAAGAACGCACATGGAGGA 57.589 42.857 0.00 0.00 0.00 3.71
2579 2767 2.270352 AAAGAACGCACATGGAGGAA 57.730 45.000 0.00 0.00 0.00 3.36
2580 2768 2.270352 AAGAACGCACATGGAGGAAA 57.730 45.000 0.00 0.00 0.00 3.13
2581 2769 2.270352 AGAACGCACATGGAGGAAAA 57.730 45.000 0.00 0.00 0.00 2.29
2582 2770 2.582052 AGAACGCACATGGAGGAAAAA 58.418 42.857 0.00 0.00 0.00 1.94
2583 2771 3.157087 AGAACGCACATGGAGGAAAAAT 58.843 40.909 0.00 0.00 0.00 1.82
2584 2772 3.573967 AGAACGCACATGGAGGAAAAATT 59.426 39.130 0.00 0.00 0.00 1.82
2585 2773 4.039124 AGAACGCACATGGAGGAAAAATTT 59.961 37.500 0.00 0.00 0.00 1.82
2586 2774 3.913089 ACGCACATGGAGGAAAAATTTC 58.087 40.909 0.00 0.00 36.46 2.17
2587 2775 3.320541 ACGCACATGGAGGAAAAATTTCA 59.679 39.130 8.06 0.00 38.92 2.69
2588 2776 3.674753 CGCACATGGAGGAAAAATTTCAC 59.325 43.478 8.06 2.03 38.92 3.18
2589 2777 4.630111 GCACATGGAGGAAAAATTTCACA 58.370 39.130 8.06 4.45 38.92 3.58
2590 2778 5.055812 GCACATGGAGGAAAAATTTCACAA 58.944 37.500 8.06 0.00 38.92 3.33
2591 2779 5.178067 GCACATGGAGGAAAAATTTCACAAG 59.822 40.000 8.06 4.03 38.92 3.16
2592 2780 6.282930 CACATGGAGGAAAAATTTCACAAGT 58.717 36.000 8.06 4.54 38.92 3.16
2593 2781 6.762661 CACATGGAGGAAAAATTTCACAAGTT 59.237 34.615 8.06 0.00 38.92 2.66
2594 2782 7.280652 CACATGGAGGAAAAATTTCACAAGTTT 59.719 33.333 8.06 0.00 38.92 2.66
2595 2783 7.828717 ACATGGAGGAAAAATTTCACAAGTTTT 59.171 29.630 8.06 0.00 41.64 2.43
2596 2784 7.608308 TGGAGGAAAAATTTCACAAGTTTTG 57.392 32.000 8.06 0.00 39.63 2.44
2597 2785 6.597280 TGGAGGAAAAATTTCACAAGTTTTGG 59.403 34.615 8.06 0.00 39.63 3.28
2598 2786 6.038161 GGAGGAAAAATTTCACAAGTTTTGGG 59.962 38.462 8.06 0.00 39.63 4.12
2599 2787 6.480763 AGGAAAAATTTCACAAGTTTTGGGT 58.519 32.000 8.06 0.00 39.63 4.51
2600 2788 6.374053 AGGAAAAATTTCACAAGTTTTGGGTG 59.626 34.615 8.06 0.00 39.63 4.61
2601 2789 6.372937 GGAAAAATTTCACAAGTTTTGGGTGA 59.627 34.615 8.06 0.00 39.63 4.02
2602 2790 6.983474 AAAATTTCACAAGTTTTGGGTGAG 57.017 33.333 0.00 0.00 41.99 3.51
2603 2791 5.930837 AATTTCACAAGTTTTGGGTGAGA 57.069 34.783 0.00 0.00 41.99 3.27
2604 2792 6.484364 AATTTCACAAGTTTTGGGTGAGAT 57.516 33.333 0.00 0.00 41.99 2.75
2605 2793 5.930837 TTTCACAAGTTTTGGGTGAGATT 57.069 34.783 0.00 0.00 41.99 2.40
2606 2794 7.595819 ATTTCACAAGTTTTGGGTGAGATTA 57.404 32.000 0.00 0.00 41.99 1.75
2607 2795 6.385649 TTCACAAGTTTTGGGTGAGATTAC 57.614 37.500 0.00 0.00 41.99 1.89
2608 2796 5.441500 TCACAAGTTTTGGGTGAGATTACA 58.558 37.500 0.00 0.00 36.69 2.41
2609 2797 5.298276 TCACAAGTTTTGGGTGAGATTACAC 59.702 40.000 0.00 0.00 36.69 2.90
2621 2809 6.910536 GTGAGATTACACCTGACTAATTGG 57.089 41.667 0.00 0.00 35.07 3.16
2622 2810 5.294552 GTGAGATTACACCTGACTAATTGGC 59.705 44.000 0.00 0.00 35.07 4.52
2623 2811 5.045942 TGAGATTACACCTGACTAATTGGCA 60.046 40.000 0.00 0.00 0.00 4.92
2624 2812 6.006275 AGATTACACCTGACTAATTGGCAT 57.994 37.500 0.00 0.00 30.31 4.40
2625 2813 5.824624 AGATTACACCTGACTAATTGGCATG 59.175 40.000 0.00 0.00 30.31 4.06
2626 2814 3.719268 ACACCTGACTAATTGGCATGA 57.281 42.857 0.00 0.00 30.31 3.07
2627 2815 3.614092 ACACCTGACTAATTGGCATGAG 58.386 45.455 0.00 0.00 30.31 2.90
2628 2816 3.009473 ACACCTGACTAATTGGCATGAGT 59.991 43.478 0.00 0.00 30.31 3.41
2629 2817 4.225042 ACACCTGACTAATTGGCATGAGTA 59.775 41.667 0.00 0.00 30.31 2.59
2630 2818 5.185454 CACCTGACTAATTGGCATGAGTAA 58.815 41.667 0.00 0.00 30.31 2.24
2631 2819 5.647658 CACCTGACTAATTGGCATGAGTAAA 59.352 40.000 0.00 0.00 30.31 2.01
2632 2820 6.319658 CACCTGACTAATTGGCATGAGTAAAT 59.680 38.462 0.00 0.00 30.31 1.40
2633 2821 7.498900 CACCTGACTAATTGGCATGAGTAAATA 59.501 37.037 0.00 0.00 30.31 1.40
2634 2822 7.716998 ACCTGACTAATTGGCATGAGTAAATAG 59.283 37.037 0.00 0.00 30.31 1.73
2635 2823 7.933577 CCTGACTAATTGGCATGAGTAAATAGA 59.066 37.037 0.00 0.00 30.31 1.98
2636 2824 8.893219 TGACTAATTGGCATGAGTAAATAGAG 57.107 34.615 0.00 0.00 0.00 2.43
2637 2825 7.933577 TGACTAATTGGCATGAGTAAATAGAGG 59.066 37.037 0.00 0.00 0.00 3.69
2638 2826 8.034313 ACTAATTGGCATGAGTAAATAGAGGA 57.966 34.615 0.00 0.00 0.00 3.71
2639 2827 8.153550 ACTAATTGGCATGAGTAAATAGAGGAG 58.846 37.037 0.00 0.00 0.00 3.69
2640 2828 4.342862 TGGCATGAGTAAATAGAGGAGC 57.657 45.455 0.00 0.00 0.00 4.70
2641 2829 3.969976 TGGCATGAGTAAATAGAGGAGCT 59.030 43.478 0.00 0.00 0.00 4.09
2642 2830 4.410228 TGGCATGAGTAAATAGAGGAGCTT 59.590 41.667 0.00 0.00 0.00 3.74
2643 2831 5.602561 TGGCATGAGTAAATAGAGGAGCTTA 59.397 40.000 0.00 0.00 0.00 3.09
2644 2832 5.929415 GGCATGAGTAAATAGAGGAGCTTAC 59.071 44.000 0.00 0.00 0.00 2.34
2645 2833 5.929415 GCATGAGTAAATAGAGGAGCTTACC 59.071 44.000 0.00 0.00 0.00 2.85
2646 2834 6.239458 GCATGAGTAAATAGAGGAGCTTACCT 60.239 42.308 0.00 0.00 43.64 3.08
2647 2835 7.688083 GCATGAGTAAATAGAGGAGCTTACCTT 60.688 40.741 0.00 0.00 40.73 3.50
2648 2836 8.861086 CATGAGTAAATAGAGGAGCTTACCTTA 58.139 37.037 0.00 0.00 40.73 2.69
2649 2837 9.608718 ATGAGTAAATAGAGGAGCTTACCTTAT 57.391 33.333 0.00 0.00 40.73 1.73
2701 2889 5.446143 AAAATATTCAAACGAGTGGTGCA 57.554 34.783 0.00 0.00 0.00 4.57
2702 2890 5.446143 AAATATTCAAACGAGTGGTGCAA 57.554 34.783 0.00 0.00 0.00 4.08
2703 2891 2.774439 ATTCAAACGAGTGGTGCAAC 57.226 45.000 0.00 0.00 0.00 4.17
2704 2892 1.745232 TTCAAACGAGTGGTGCAACT 58.255 45.000 2.04 0.00 36.74 3.16
2705 2893 1.295792 TCAAACGAGTGGTGCAACTC 58.704 50.000 2.04 5.83 42.68 3.01
2706 2894 1.013596 CAAACGAGTGGTGCAACTCA 58.986 50.000 16.70 0.95 45.77 3.41
2707 2895 1.400142 CAAACGAGTGGTGCAACTCAA 59.600 47.619 16.70 0.00 45.77 3.02
2708 2896 1.967319 AACGAGTGGTGCAACTCAAT 58.033 45.000 16.70 2.92 45.77 2.57
2709 2897 1.229428 ACGAGTGGTGCAACTCAATG 58.771 50.000 16.70 5.23 45.77 2.82
2710 2898 0.110056 CGAGTGGTGCAACTCAATGC 60.110 55.000 16.70 0.00 45.77 3.56
2723 2911 5.682862 GCAACTCAATGCACCTTATATTTCG 59.317 40.000 0.00 0.00 45.70 3.46
2724 2912 6.201517 CAACTCAATGCACCTTATATTTCGG 58.798 40.000 0.00 0.00 0.00 4.30
2725 2913 5.680619 ACTCAATGCACCTTATATTTCGGA 58.319 37.500 0.00 0.00 0.00 4.55
2726 2914 6.299141 ACTCAATGCACCTTATATTTCGGAT 58.701 36.000 0.00 0.00 0.00 4.18
2727 2915 6.772716 ACTCAATGCACCTTATATTTCGGATT 59.227 34.615 0.00 0.00 0.00 3.01
2728 2916 7.285401 ACTCAATGCACCTTATATTTCGGATTT 59.715 33.333 0.00 0.00 0.00 2.17
2729 2917 8.006298 TCAATGCACCTTATATTTCGGATTTT 57.994 30.769 0.00 0.00 0.00 1.82
2730 2918 8.474025 TCAATGCACCTTATATTTCGGATTTTT 58.526 29.630 0.00 0.00 0.00 1.94
2765 2953 8.701908 TCTATACACCTTATATCAAGGAACGT 57.298 34.615 9.96 6.44 39.81 3.99
2766 2954 9.797642 TCTATACACCTTATATCAAGGAACGTA 57.202 33.333 9.96 8.14 39.81 3.57
2768 2956 6.158023 ACACCTTATATCAAGGAACGTAGG 57.842 41.667 9.96 0.00 39.81 3.18
2769 2957 5.070047 ACACCTTATATCAAGGAACGTAGGG 59.930 44.000 9.96 0.00 39.81 3.53
2770 2958 5.303589 CACCTTATATCAAGGAACGTAGGGA 59.696 44.000 9.96 0.00 39.81 4.20
2771 2959 5.539193 ACCTTATATCAAGGAACGTAGGGAG 59.461 44.000 9.96 0.00 39.81 4.30
2772 2960 5.539193 CCTTATATCAAGGAACGTAGGGAGT 59.461 44.000 0.00 0.00 39.81 3.85
2773 2961 6.718454 CCTTATATCAAGGAACGTAGGGAGTA 59.282 42.308 0.00 0.00 39.81 2.59
2774 2962 7.396623 CCTTATATCAAGGAACGTAGGGAGTAT 59.603 40.741 0.00 0.00 39.81 2.12
2775 2963 8.716674 TTATATCAAGGAACGTAGGGAGTATT 57.283 34.615 0.00 0.00 0.00 1.89
2776 2964 5.952347 ATCAAGGAACGTAGGGAGTATTT 57.048 39.130 0.00 0.00 0.00 1.40
2777 2965 5.750352 TCAAGGAACGTAGGGAGTATTTT 57.250 39.130 0.00 0.00 0.00 1.82
2778 2966 6.117975 TCAAGGAACGTAGGGAGTATTTTT 57.882 37.500 0.00 0.00 0.00 1.94
2843 3031 8.034058 ACAAGTACACTGATTTGAATCTAAGC 57.966 34.615 5.42 0.00 36.39 3.09
2844 3032 7.880195 ACAAGTACACTGATTTGAATCTAAGCT 59.120 33.333 5.42 0.00 36.39 3.74
2845 3033 8.725148 CAAGTACACTGATTTGAATCTAAGCTT 58.275 33.333 3.48 3.48 36.39 3.74
2846 3034 8.485976 AGTACACTGATTTGAATCTAAGCTTC 57.514 34.615 0.00 0.00 36.39 3.86
2847 3035 8.097038 AGTACACTGATTTGAATCTAAGCTTCA 58.903 33.333 0.00 0.00 36.39 3.02
2848 3036 7.750229 ACACTGATTTGAATCTAAGCTTCAA 57.250 32.000 0.00 0.00 40.02 2.69
2849 3037 7.814642 ACACTGATTTGAATCTAAGCTTCAAG 58.185 34.615 0.00 0.00 41.98 3.02
2850 3038 7.663081 ACACTGATTTGAATCTAAGCTTCAAGA 59.337 33.333 0.00 0.83 41.98 3.02
2851 3039 8.509690 CACTGATTTGAATCTAAGCTTCAAGAA 58.490 33.333 0.00 0.00 41.98 2.52
2852 3040 9.071276 ACTGATTTGAATCTAAGCTTCAAGAAA 57.929 29.630 0.00 0.00 41.98 2.52
2853 3041 9.557338 CTGATTTGAATCTAAGCTTCAAGAAAG 57.443 33.333 0.00 0.00 41.98 2.62
2854 3042 9.071276 TGATTTGAATCTAAGCTTCAAGAAAGT 57.929 29.630 0.00 0.00 41.98 2.66
2857 3045 8.902540 TTGAATCTAAGCTTCAAGAAAGTACA 57.097 30.769 0.00 0.00 37.61 2.90
2858 3046 8.902540 TGAATCTAAGCTTCAAGAAAGTACAA 57.097 30.769 0.00 0.00 37.31 2.41
2859 3047 9.337396 TGAATCTAAGCTTCAAGAAAGTACAAA 57.663 29.630 0.00 0.00 37.31 2.83
2860 3048 9.818796 GAATCTAAGCTTCAAGAAAGTACAAAG 57.181 33.333 0.00 0.00 37.31 2.77
2861 3049 8.910351 ATCTAAGCTTCAAGAAAGTACAAAGT 57.090 30.769 0.00 0.00 37.31 2.66
2862 3050 9.998106 ATCTAAGCTTCAAGAAAGTACAAAGTA 57.002 29.630 0.00 0.00 37.31 2.24
2863 3051 9.826574 TCTAAGCTTCAAGAAAGTACAAAGTAA 57.173 29.630 0.00 0.00 37.31 2.24
2864 3052 9.865484 CTAAGCTTCAAGAAAGTACAAAGTAAC 57.135 33.333 0.00 0.00 37.31 2.50
2865 3053 8.507524 AAGCTTCAAGAAAGTACAAAGTAACT 57.492 30.769 0.00 0.00 37.31 2.24
2866 3054 8.144155 AGCTTCAAGAAAGTACAAAGTAACTC 57.856 34.615 0.00 0.00 37.31 3.01
2867 3055 7.226918 AGCTTCAAGAAAGTACAAAGTAACTCC 59.773 37.037 0.00 0.00 37.31 3.85
2868 3056 7.226918 GCTTCAAGAAAGTACAAAGTAACTCCT 59.773 37.037 0.00 0.00 37.31 3.69
2869 3057 8.658499 TTCAAGAAAGTACAAAGTAACTCCTC 57.342 34.615 0.00 0.00 0.00 3.71
2870 3058 7.215085 TCAAGAAAGTACAAAGTAACTCCTCC 58.785 38.462 0.00 0.00 0.00 4.30
2871 3059 5.780984 AGAAAGTACAAAGTAACTCCTCCG 58.219 41.667 0.00 0.00 0.00 4.63
2872 3060 5.303845 AGAAAGTACAAAGTAACTCCTCCGT 59.696 40.000 0.00 0.00 0.00 4.69
2873 3061 4.780275 AGTACAAAGTAACTCCTCCGTC 57.220 45.455 0.00 0.00 0.00 4.79
2874 3062 2.719426 ACAAAGTAACTCCTCCGTCG 57.281 50.000 0.00 0.00 0.00 5.12
2875 3063 1.271656 ACAAAGTAACTCCTCCGTCGG 59.728 52.381 4.39 4.39 0.00 4.79
2876 3064 0.893447 AAAGTAACTCCTCCGTCGGG 59.107 55.000 12.29 1.87 0.00 5.14
2877 3065 0.969409 AAGTAACTCCTCCGTCGGGG 60.969 60.000 12.29 8.10 37.02 5.73
2878 3066 2.757099 TAACTCCTCCGTCGGGGC 60.757 66.667 12.29 0.00 34.94 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.395702 ACGCGATTGGGCCCTGTA 61.396 61.111 25.70 8.98 0.00 2.74
462 528 0.832559 CCCCTACCGGAATCCTCTCC 60.833 65.000 9.46 0.00 0.00 3.71
472 555 2.383601 ATTTCCCAGCCCCTACCGG 61.384 63.158 0.00 0.00 0.00 5.28
616 731 2.919228 AGTAAATGGTTCATCCGAGGC 58.081 47.619 0.00 0.00 39.52 4.70
651 766 6.019881 CCCACTTCTTTCAAAATGAACGTTTC 60.020 38.462 0.46 0.00 35.89 2.78
797 934 2.904434 AGTAAGTGGTTCATCCGAGGTT 59.096 45.455 0.00 0.00 39.52 3.50
924 1062 9.860650 GAGGAGAGGATGTATGTCTGTATATAT 57.139 37.037 0.00 0.00 0.00 0.86
925 1063 8.275758 GGAGGAGAGGATGTATGTCTGTATATA 58.724 40.741 0.00 0.00 0.00 0.86
926 1064 7.036205 AGGAGGAGAGGATGTATGTCTGTATAT 60.036 40.741 0.00 0.00 0.00 0.86
927 1065 6.275855 AGGAGGAGAGGATGTATGTCTGTATA 59.724 42.308 0.00 0.00 0.00 1.47
928 1066 5.075761 AGGAGGAGAGGATGTATGTCTGTAT 59.924 44.000 0.00 0.00 0.00 2.29
929 1067 4.417183 AGGAGGAGAGGATGTATGTCTGTA 59.583 45.833 0.00 0.00 0.00 2.74
930 1068 3.206412 AGGAGGAGAGGATGTATGTCTGT 59.794 47.826 0.00 0.00 0.00 3.41
931 1069 3.826157 GAGGAGGAGAGGATGTATGTCTG 59.174 52.174 0.00 0.00 0.00 3.51
932 1070 3.497763 CGAGGAGGAGAGGATGTATGTCT 60.498 52.174 0.00 0.00 0.00 3.41
933 1071 2.817258 CGAGGAGGAGAGGATGTATGTC 59.183 54.545 0.00 0.00 0.00 3.06
934 1072 2.175931 ACGAGGAGGAGAGGATGTATGT 59.824 50.000 0.00 0.00 0.00 2.29
935 1073 2.817258 GACGAGGAGGAGAGGATGTATG 59.183 54.545 0.00 0.00 0.00 2.39
936 1074 2.224917 GGACGAGGAGGAGAGGATGTAT 60.225 54.545 0.00 0.00 0.00 2.29
937 1075 1.143277 GGACGAGGAGGAGAGGATGTA 59.857 57.143 0.00 0.00 0.00 2.29
938 1076 0.106419 GGACGAGGAGGAGAGGATGT 60.106 60.000 0.00 0.00 0.00 3.06
939 1077 0.825840 GGGACGAGGAGGAGAGGATG 60.826 65.000 0.00 0.00 0.00 3.51
940 1078 1.539665 GGGACGAGGAGGAGAGGAT 59.460 63.158 0.00 0.00 0.00 3.24
941 1079 3.008408 GGGACGAGGAGGAGAGGA 58.992 66.667 0.00 0.00 0.00 3.71
954 1092 4.337060 GTTTGTTGCGGGCGGGAC 62.337 66.667 0.00 0.00 0.00 4.46
957 1095 4.676586 GTCGTTTGTTGCGGGCGG 62.677 66.667 0.00 0.00 0.00 6.13
958 1096 3.855209 CTGTCGTTTGTTGCGGGCG 62.855 63.158 0.00 0.00 0.00 6.13
959 1097 2.051345 CTGTCGTTTGTTGCGGGC 60.051 61.111 0.00 0.00 0.00 6.13
960 1098 2.637025 CCTGTCGTTTGTTGCGGG 59.363 61.111 0.00 0.00 0.00 6.13
961 1099 2.051345 GCCTGTCGTTTGTTGCGG 60.051 61.111 0.00 0.00 0.00 5.69
962 1100 2.051345 GGCCTGTCGTTTGTTGCG 60.051 61.111 0.00 0.00 0.00 4.85
963 1101 1.008538 CAGGCCTGTCGTTTGTTGC 60.009 57.895 25.53 0.00 0.00 4.17
964 1102 1.654220 CCAGGCCTGTCGTTTGTTG 59.346 57.895 30.63 8.72 0.00 3.33
965 1103 2.193536 GCCAGGCCTGTCGTTTGTT 61.194 57.895 30.63 0.00 0.00 2.83
966 1104 2.594592 GCCAGGCCTGTCGTTTGT 60.595 61.111 30.63 0.00 0.00 2.83
967 1105 3.365265 GGCCAGGCCTGTCGTTTG 61.365 66.667 30.63 15.52 46.69 2.93
997 1135 2.385091 CGGCGGGAATTCGAACGTT 61.385 57.895 0.00 0.00 0.00 3.99
1431 1579 3.075005 GGCAGTAGGTGGGAGCGA 61.075 66.667 0.00 0.00 0.00 4.93
1516 1664 1.810030 CGTGGCCTTCGAGCTAACC 60.810 63.158 13.96 0.00 0.00 2.85
1646 1804 4.578928 ACAAAGTGGCGCCCTAATAATAAG 59.421 41.667 26.77 5.83 0.00 1.73
1647 1805 4.528920 ACAAAGTGGCGCCCTAATAATAA 58.471 39.130 26.77 0.00 0.00 1.40
1648 1806 4.159244 ACAAAGTGGCGCCCTAATAATA 57.841 40.909 26.77 0.00 0.00 0.98
1649 1807 3.012934 ACAAAGTGGCGCCCTAATAAT 57.987 42.857 26.77 0.00 0.00 1.28
1671 1831 2.628178 CCTCGTGATTGGATGGCTACTA 59.372 50.000 0.00 0.00 0.00 1.82
1672 1832 1.414181 CCTCGTGATTGGATGGCTACT 59.586 52.381 0.00 0.00 0.00 2.57
1673 1833 1.139058 ACCTCGTGATTGGATGGCTAC 59.861 52.381 0.00 0.00 0.00 3.58
1724 1884 2.089600 AGAATCCTTCTCTACGGGGG 57.910 55.000 0.00 0.00 34.07 5.40
1725 1885 3.432326 CCAAAGAATCCTTCTCTACGGGG 60.432 52.174 0.00 0.00 39.61 5.73
1726 1886 3.197983 ACCAAAGAATCCTTCTCTACGGG 59.802 47.826 0.00 0.00 39.61 5.28
1742 1902 6.019801 GCTAGTACACATATGTTCGACCAAAG 60.020 42.308 5.37 4.32 40.48 2.77
1743 1903 5.808540 GCTAGTACACATATGTTCGACCAAA 59.191 40.000 5.37 0.00 40.48 3.28
1750 1910 5.579511 ACCAAACGCTAGTACACATATGTTC 59.420 40.000 5.37 0.08 40.48 3.18
1753 1913 6.755141 ACTAACCAAACGCTAGTACACATATG 59.245 38.462 0.00 0.00 0.00 1.78
1759 1919 3.573538 TCCACTAACCAAACGCTAGTACA 59.426 43.478 0.00 0.00 0.00 2.90
1762 1922 3.514309 AGATCCACTAACCAAACGCTAGT 59.486 43.478 0.00 0.00 0.00 2.57
1763 1923 4.113354 GAGATCCACTAACCAAACGCTAG 58.887 47.826 0.00 0.00 0.00 3.42
1765 1925 2.674177 CGAGATCCACTAACCAAACGCT 60.674 50.000 0.00 0.00 0.00 5.07
1767 1927 3.226346 TCGAGATCCACTAACCAAACG 57.774 47.619 0.00 0.00 0.00 3.60
1774 1934 5.789521 TGTTGACATTTCGAGATCCACTAA 58.210 37.500 0.00 0.00 0.00 2.24
1814 1974 3.064207 GGATTGTACAAGTCGAACAGCA 58.936 45.455 14.65 0.00 0.00 4.41
1840 2000 1.159285 CTGTACGTCGTAGTCCCACA 58.841 55.000 5.08 0.61 0.00 4.17
1895 2060 3.248266 GGTCAGCAAACAATCATCAAGC 58.752 45.455 0.00 0.00 0.00 4.01
1975 2140 1.550976 GTTCGTGTCCAGAATCTCCCT 59.449 52.381 0.00 0.00 0.00 4.20
2023 2188 5.984725 TCTGTCTTTTCCAAACTGTGTAGA 58.015 37.500 0.00 0.00 0.00 2.59
2080 2245 1.209990 ACGTGACTGTGTTGGGGTTTA 59.790 47.619 0.00 0.00 0.00 2.01
2082 2247 0.831966 TACGTGACTGTGTTGGGGTT 59.168 50.000 0.00 0.00 0.00 4.11
2083 2248 1.053424 ATACGTGACTGTGTTGGGGT 58.947 50.000 0.00 0.00 0.00 4.95
2086 2251 0.796312 GCCATACGTGACTGTGTTGG 59.204 55.000 0.00 0.00 32.57 3.77
2087 2252 1.726791 GAGCCATACGTGACTGTGTTG 59.273 52.381 0.00 0.00 0.00 3.33
2089 2254 0.246635 GGAGCCATACGTGACTGTGT 59.753 55.000 0.00 0.00 0.00 3.72
2090 2255 0.246360 TGGAGCCATACGTGACTGTG 59.754 55.000 0.00 0.00 0.00 3.66
2130 2295 7.170998 GGATAACCCGTTCATAGTTCTATGTTG 59.829 40.741 16.26 9.36 0.00 3.33
2131 2296 7.147620 TGGATAACCCGTTCATAGTTCTATGTT 60.148 37.037 16.26 7.60 37.93 2.71
2132 2297 6.325545 TGGATAACCCGTTCATAGTTCTATGT 59.674 38.462 16.26 2.34 37.93 2.29
2133 2298 6.755206 TGGATAACCCGTTCATAGTTCTATG 58.245 40.000 12.12 12.12 37.93 2.23
2134 2299 6.989155 TGGATAACCCGTTCATAGTTCTAT 57.011 37.500 0.00 0.00 37.93 1.98
2135 2300 6.989155 ATGGATAACCCGTTCATAGTTCTA 57.011 37.500 0.00 0.00 37.93 2.10
2136 2301 5.888982 ATGGATAACCCGTTCATAGTTCT 57.111 39.130 0.00 0.00 37.93 3.01
2205 2377 7.335924 TGAATTATTTAGAGGTTCTTCCCGTTG 59.664 37.037 0.00 0.00 36.75 4.10
2206 2378 7.399634 TGAATTATTTAGAGGTTCTTCCCGTT 58.600 34.615 0.00 0.00 36.75 4.44
2207 2379 6.954232 TGAATTATTTAGAGGTTCTTCCCGT 58.046 36.000 0.00 0.00 36.75 5.28
2208 2380 7.859325 TTGAATTATTTAGAGGTTCTTCCCG 57.141 36.000 0.00 0.00 36.75 5.14
2209 2381 8.851145 GGATTGAATTATTTAGAGGTTCTTCCC 58.149 37.037 0.00 0.00 36.75 3.97
2210 2382 8.851145 GGGATTGAATTATTTAGAGGTTCTTCC 58.149 37.037 0.00 0.00 0.00 3.46
2211 2383 9.408648 TGGGATTGAATTATTTAGAGGTTCTTC 57.591 33.333 0.00 0.00 0.00 2.87
2212 2384 9.942526 ATGGGATTGAATTATTTAGAGGTTCTT 57.057 29.630 0.00 0.00 0.00 2.52
2214 2386 8.579863 CCATGGGATTGAATTATTTAGAGGTTC 58.420 37.037 2.85 0.00 0.00 3.62
2221 2404 7.014518 CAGCAGTCCATGGGATTGAATTATTTA 59.985 37.037 13.02 0.00 41.15 1.40
2263 2446 7.807433 CACAAAATAAGTGATTTCATCCGTTGA 59.193 33.333 0.00 0.00 36.71 3.18
2282 2466 6.493189 AAGTTTGGTGGGATTACACAAAAT 57.507 33.333 2.61 0.00 43.83 1.82
2286 2471 4.282496 ACAAAGTTTGGTGGGATTACACA 58.718 39.130 19.45 0.00 43.08 3.72
2295 2480 5.592104 AACTCCTAAACAAAGTTTGGTGG 57.408 39.130 19.45 11.56 29.09 4.61
2384 2572 4.973051 CACAAAGTTTTGCTTGCACGTATA 59.027 37.500 4.58 0.00 41.79 1.47
2402 2590 1.400142 CCTTCTTGACGTGCACACAAA 59.600 47.619 18.64 6.29 0.00 2.83
2414 2602 6.003950 CCAGAACCTAAATGTTCCTTCTTGA 58.996 40.000 0.59 0.00 44.55 3.02
2417 2605 4.354087 ACCCAGAACCTAAATGTTCCTTCT 59.646 41.667 0.59 0.00 44.55 2.85
2432 2620 2.097466 CACATATGGCGAAACCCAGAAC 59.903 50.000 7.80 0.00 38.50 3.01
2447 2635 8.150945 AGTTAGCGGATTGATTACTTCACATAT 58.849 33.333 0.00 0.00 32.84 1.78
2449 2637 6.349300 AGTTAGCGGATTGATTACTTCACAT 58.651 36.000 0.00 0.00 32.84 3.21
2478 2666 6.055588 TCTTAAATCCCCTCGATCAATGAAC 58.944 40.000 0.00 0.00 0.00 3.18
2502 2690 6.347061 AGGAATGGAGGGAGTATCAAAATT 57.653 37.500 0.00 0.00 36.25 1.82
2503 2691 7.465900 TTAGGAATGGAGGGAGTATCAAAAT 57.534 36.000 0.00 0.00 36.25 1.82
2504 2692 6.901615 TTAGGAATGGAGGGAGTATCAAAA 57.098 37.500 0.00 0.00 36.25 2.44
2526 2714 8.909923 GTGCCAAAAACTATACACCCTATATTT 58.090 33.333 0.00 0.00 0.00 1.40
2527 2715 7.227910 CGTGCCAAAAACTATACACCCTATATT 59.772 37.037 0.00 0.00 0.00 1.28
2528 2716 6.708949 CGTGCCAAAAACTATACACCCTATAT 59.291 38.462 0.00 0.00 0.00 0.86
2529 2717 6.050432 CGTGCCAAAAACTATACACCCTATA 58.950 40.000 0.00 0.00 0.00 1.31
2530 2718 4.879545 CGTGCCAAAAACTATACACCCTAT 59.120 41.667 0.00 0.00 0.00 2.57
2531 2719 4.255301 CGTGCCAAAAACTATACACCCTA 58.745 43.478 0.00 0.00 0.00 3.53
2532 2720 3.078837 CGTGCCAAAAACTATACACCCT 58.921 45.455 0.00 0.00 0.00 4.34
2533 2721 2.162809 CCGTGCCAAAAACTATACACCC 59.837 50.000 0.00 0.00 0.00 4.61
2534 2722 3.075884 TCCGTGCCAAAAACTATACACC 58.924 45.455 0.00 0.00 0.00 4.16
2535 2723 4.752661 TTCCGTGCCAAAAACTATACAC 57.247 40.909 0.00 0.00 0.00 2.90
2536 2724 5.968528 ATTTCCGTGCCAAAAACTATACA 57.031 34.783 0.00 0.00 0.00 2.29
2537 2725 8.745464 TTTAATTTCCGTGCCAAAAACTATAC 57.255 30.769 0.00 0.00 0.00 1.47
2538 2726 8.794553 TCTTTAATTTCCGTGCCAAAAACTATA 58.205 29.630 0.00 0.00 0.00 1.31
2539 2727 7.662897 TCTTTAATTTCCGTGCCAAAAACTAT 58.337 30.769 0.00 0.00 0.00 2.12
2540 2728 7.040473 TCTTTAATTTCCGTGCCAAAAACTA 57.960 32.000 0.00 0.00 0.00 2.24
2541 2729 5.908341 TCTTTAATTTCCGTGCCAAAAACT 58.092 33.333 0.00 0.00 0.00 2.66
2542 2730 6.415702 GTTCTTTAATTTCCGTGCCAAAAAC 58.584 36.000 0.00 0.00 0.00 2.43
2543 2731 5.232414 CGTTCTTTAATTTCCGTGCCAAAAA 59.768 36.000 0.00 0.00 0.00 1.94
2544 2732 4.740695 CGTTCTTTAATTTCCGTGCCAAAA 59.259 37.500 0.00 0.00 0.00 2.44
2545 2733 4.291783 CGTTCTTTAATTTCCGTGCCAAA 58.708 39.130 0.00 0.00 0.00 3.28
2546 2734 3.854045 GCGTTCTTTAATTTCCGTGCCAA 60.854 43.478 0.00 0.00 0.00 4.52
2547 2735 2.350964 GCGTTCTTTAATTTCCGTGCCA 60.351 45.455 0.00 0.00 0.00 4.92
2548 2736 2.247637 GCGTTCTTTAATTTCCGTGCC 58.752 47.619 0.00 0.00 0.00 5.01
2549 2737 2.655001 GTGCGTTCTTTAATTTCCGTGC 59.345 45.455 0.00 0.00 0.00 5.34
2550 2738 3.879427 TGTGCGTTCTTTAATTTCCGTG 58.121 40.909 0.00 0.00 0.00 4.94
2551 2739 4.472286 CATGTGCGTTCTTTAATTTCCGT 58.528 39.130 0.00 0.00 0.00 4.69
2552 2740 3.851403 CCATGTGCGTTCTTTAATTTCCG 59.149 43.478 0.00 0.00 0.00 4.30
2553 2741 5.054390 TCCATGTGCGTTCTTTAATTTCC 57.946 39.130 0.00 0.00 0.00 3.13
2554 2742 5.095490 CCTCCATGTGCGTTCTTTAATTTC 58.905 41.667 0.00 0.00 0.00 2.17
2555 2743 4.764823 TCCTCCATGTGCGTTCTTTAATTT 59.235 37.500 0.00 0.00 0.00 1.82
2556 2744 4.331968 TCCTCCATGTGCGTTCTTTAATT 58.668 39.130 0.00 0.00 0.00 1.40
2557 2745 3.950397 TCCTCCATGTGCGTTCTTTAAT 58.050 40.909 0.00 0.00 0.00 1.40
2558 2746 3.410631 TCCTCCATGTGCGTTCTTTAA 57.589 42.857 0.00 0.00 0.00 1.52
2559 2747 3.410631 TTCCTCCATGTGCGTTCTTTA 57.589 42.857 0.00 0.00 0.00 1.85
2560 2748 2.270352 TTCCTCCATGTGCGTTCTTT 57.730 45.000 0.00 0.00 0.00 2.52
2561 2749 2.270352 TTTCCTCCATGTGCGTTCTT 57.730 45.000 0.00 0.00 0.00 2.52
2562 2750 2.270352 TTTTCCTCCATGTGCGTTCT 57.730 45.000 0.00 0.00 0.00 3.01
2563 2751 3.575965 ATTTTTCCTCCATGTGCGTTC 57.424 42.857 0.00 0.00 0.00 3.95
2564 2752 4.202202 TGAAATTTTTCCTCCATGTGCGTT 60.202 37.500 0.00 0.00 36.36 4.84
2565 2753 3.320541 TGAAATTTTTCCTCCATGTGCGT 59.679 39.130 0.00 0.00 36.36 5.24
2566 2754 3.674753 GTGAAATTTTTCCTCCATGTGCG 59.325 43.478 0.00 0.00 36.36 5.34
2567 2755 4.630111 TGTGAAATTTTTCCTCCATGTGC 58.370 39.130 0.00 0.00 36.36 4.57
2568 2756 6.282930 ACTTGTGAAATTTTTCCTCCATGTG 58.717 36.000 0.00 0.00 36.36 3.21
2569 2757 6.484364 ACTTGTGAAATTTTTCCTCCATGT 57.516 33.333 0.00 2.04 36.36 3.21
2570 2758 7.790823 AAACTTGTGAAATTTTTCCTCCATG 57.209 32.000 0.00 0.00 36.36 3.66
2571 2759 7.282901 CCAAAACTTGTGAAATTTTTCCTCCAT 59.717 33.333 0.00 0.00 36.36 3.41
2572 2760 6.597280 CCAAAACTTGTGAAATTTTTCCTCCA 59.403 34.615 0.00 0.00 36.36 3.86
2573 2761 6.038161 CCCAAAACTTGTGAAATTTTTCCTCC 59.962 38.462 0.00 0.00 36.36 4.30
2574 2762 6.597672 ACCCAAAACTTGTGAAATTTTTCCTC 59.402 34.615 0.00 0.00 36.36 3.71
2575 2763 6.374053 CACCCAAAACTTGTGAAATTTTTCCT 59.626 34.615 0.00 0.00 36.36 3.36
2576 2764 6.372937 TCACCCAAAACTTGTGAAATTTTTCC 59.627 34.615 0.00 0.00 36.16 3.13
2577 2765 7.333174 TCTCACCCAAAACTTGTGAAATTTTTC 59.667 33.333 0.00 0.00 38.45 2.29
2578 2766 7.164803 TCTCACCCAAAACTTGTGAAATTTTT 58.835 30.769 0.00 0.00 38.45 1.94
2579 2767 6.706295 TCTCACCCAAAACTTGTGAAATTTT 58.294 32.000 0.00 0.00 38.45 1.82
2580 2768 6.293004 TCTCACCCAAAACTTGTGAAATTT 57.707 33.333 0.00 0.00 38.45 1.82
2581 2769 5.930837 TCTCACCCAAAACTTGTGAAATT 57.069 34.783 0.00 0.00 38.45 1.82
2582 2770 6.484364 AATCTCACCCAAAACTTGTGAAAT 57.516 33.333 0.00 0.00 38.45 2.17
2583 2771 5.930837 AATCTCACCCAAAACTTGTGAAA 57.069 34.783 0.00 0.00 38.45 2.69
2584 2772 5.888724 TGTAATCTCACCCAAAACTTGTGAA 59.111 36.000 0.00 0.00 38.45 3.18
2585 2773 5.298276 GTGTAATCTCACCCAAAACTTGTGA 59.702 40.000 0.00 0.00 37.45 3.58
2586 2774 5.519722 GTGTAATCTCACCCAAAACTTGTG 58.480 41.667 0.00 0.00 32.81 3.33
2587 2775 5.767816 GTGTAATCTCACCCAAAACTTGT 57.232 39.130 0.00 0.00 32.81 3.16
2598 2786 5.294552 GCCAATTAGTCAGGTGTAATCTCAC 59.705 44.000 0.00 0.00 37.57 3.51
2599 2787 5.045942 TGCCAATTAGTCAGGTGTAATCTCA 60.046 40.000 0.00 0.00 0.00 3.27
2600 2788 5.428253 TGCCAATTAGTCAGGTGTAATCTC 58.572 41.667 0.00 0.00 0.00 2.75
2601 2789 5.435686 TGCCAATTAGTCAGGTGTAATCT 57.564 39.130 0.00 0.00 0.00 2.40
2602 2790 5.822519 TCATGCCAATTAGTCAGGTGTAATC 59.177 40.000 0.00 0.00 0.00 1.75
2603 2791 5.754782 TCATGCCAATTAGTCAGGTGTAAT 58.245 37.500 0.00 0.00 0.00 1.89
2604 2792 5.172687 TCATGCCAATTAGTCAGGTGTAA 57.827 39.130 0.00 0.00 0.00 2.41
2605 2793 4.225042 ACTCATGCCAATTAGTCAGGTGTA 59.775 41.667 0.00 0.00 0.00 2.90
2606 2794 3.009473 ACTCATGCCAATTAGTCAGGTGT 59.991 43.478 0.00 0.00 0.00 4.16
2607 2795 3.614092 ACTCATGCCAATTAGTCAGGTG 58.386 45.455 0.00 0.00 0.00 4.00
2608 2796 5.435686 TTACTCATGCCAATTAGTCAGGT 57.564 39.130 0.00 0.00 0.00 4.00
2609 2797 6.949352 ATTTACTCATGCCAATTAGTCAGG 57.051 37.500 0.00 0.00 0.00 3.86
2610 2798 8.893219 TCTATTTACTCATGCCAATTAGTCAG 57.107 34.615 0.00 0.00 0.00 3.51
2611 2799 7.933577 CCTCTATTTACTCATGCCAATTAGTCA 59.066 37.037 0.00 0.00 0.00 3.41
2612 2800 8.150945 TCCTCTATTTACTCATGCCAATTAGTC 58.849 37.037 0.00 0.00 0.00 2.59
2613 2801 8.034313 TCCTCTATTTACTCATGCCAATTAGT 57.966 34.615 0.00 0.00 0.00 2.24
2614 2802 7.118971 GCTCCTCTATTTACTCATGCCAATTAG 59.881 40.741 0.00 0.00 0.00 1.73
2615 2803 6.936900 GCTCCTCTATTTACTCATGCCAATTA 59.063 38.462 0.00 0.00 0.00 1.40
2616 2804 5.767168 GCTCCTCTATTTACTCATGCCAATT 59.233 40.000 0.00 0.00 0.00 2.32
2617 2805 5.072872 AGCTCCTCTATTTACTCATGCCAAT 59.927 40.000 0.00 0.00 0.00 3.16
2618 2806 4.410228 AGCTCCTCTATTTACTCATGCCAA 59.590 41.667 0.00 0.00 0.00 4.52
2619 2807 3.969976 AGCTCCTCTATTTACTCATGCCA 59.030 43.478 0.00 0.00 0.00 4.92
2620 2808 4.615588 AGCTCCTCTATTTACTCATGCC 57.384 45.455 0.00 0.00 0.00 4.40
2621 2809 5.929415 GGTAAGCTCCTCTATTTACTCATGC 59.071 44.000 0.00 0.00 0.00 4.06
2622 2810 7.296628 AGGTAAGCTCCTCTATTTACTCATG 57.703 40.000 0.00 0.00 31.32 3.07
2623 2811 7.922699 AAGGTAAGCTCCTCTATTTACTCAT 57.077 36.000 0.00 0.00 36.74 2.90
2678 2866 5.837437 TGCACCACTCGTTTGAATATTTTT 58.163 33.333 0.00 0.00 0.00 1.94
2679 2867 5.446143 TGCACCACTCGTTTGAATATTTT 57.554 34.783 0.00 0.00 0.00 1.82
2680 2868 5.009610 AGTTGCACCACTCGTTTGAATATTT 59.990 36.000 0.00 0.00 0.00 1.40
2681 2869 4.518970 AGTTGCACCACTCGTTTGAATATT 59.481 37.500 0.00 0.00 0.00 1.28
2682 2870 4.072131 AGTTGCACCACTCGTTTGAATAT 58.928 39.130 0.00 0.00 0.00 1.28
2683 2871 3.472652 AGTTGCACCACTCGTTTGAATA 58.527 40.909 0.00 0.00 0.00 1.75
2684 2872 2.290641 GAGTTGCACCACTCGTTTGAAT 59.709 45.455 2.87 0.00 34.12 2.57
2685 2873 1.668751 GAGTTGCACCACTCGTTTGAA 59.331 47.619 2.87 0.00 34.12 2.69
2686 2874 1.295792 GAGTTGCACCACTCGTTTGA 58.704 50.000 2.87 0.00 34.12 2.69
2687 2875 1.013596 TGAGTTGCACCACTCGTTTG 58.986 50.000 12.68 0.00 45.53 2.93
2688 2876 1.745232 TTGAGTTGCACCACTCGTTT 58.255 45.000 12.68 0.00 45.53 3.60
2689 2877 1.603802 CATTGAGTTGCACCACTCGTT 59.396 47.619 12.68 1.69 45.53 3.85
2690 2878 1.229428 CATTGAGTTGCACCACTCGT 58.771 50.000 12.68 3.04 45.53 4.18
2691 2879 0.110056 GCATTGAGTTGCACCACTCG 60.110 55.000 12.68 1.89 45.53 4.18
2692 2880 3.780925 GCATTGAGTTGCACCACTC 57.219 52.632 10.99 10.99 43.23 3.51
2699 2887 5.682862 CGAAATATAAGGTGCATTGAGTTGC 59.317 40.000 0.00 0.00 43.07 4.17
2700 2888 6.038161 TCCGAAATATAAGGTGCATTGAGTTG 59.962 38.462 0.00 0.00 0.00 3.16
2701 2889 6.119536 TCCGAAATATAAGGTGCATTGAGTT 58.880 36.000 0.00 0.00 0.00 3.01
2702 2890 5.680619 TCCGAAATATAAGGTGCATTGAGT 58.319 37.500 0.00 0.00 0.00 3.41
2703 2891 6.808008 ATCCGAAATATAAGGTGCATTGAG 57.192 37.500 0.00 0.00 0.00 3.02
2704 2892 7.581213 AAATCCGAAATATAAGGTGCATTGA 57.419 32.000 0.00 0.00 0.00 2.57
2705 2893 8.647143 AAAAATCCGAAATATAAGGTGCATTG 57.353 30.769 0.00 0.00 0.00 2.82
2739 2927 9.310449 ACGTTCCTTGATATAAGGTGTATAGAT 57.690 33.333 5.67 0.00 38.55 1.98
2740 2928 8.701908 ACGTTCCTTGATATAAGGTGTATAGA 57.298 34.615 5.67 0.00 38.55 1.98
2742 2930 9.017509 CCTACGTTCCTTGATATAAGGTGTATA 57.982 37.037 0.00 0.00 38.55 1.47
2743 2931 7.039223 CCCTACGTTCCTTGATATAAGGTGTAT 60.039 40.741 0.00 0.00 38.55 2.29
2744 2932 6.266103 CCCTACGTTCCTTGATATAAGGTGTA 59.734 42.308 0.00 6.75 38.55 2.90
2745 2933 5.070047 CCCTACGTTCCTTGATATAAGGTGT 59.930 44.000 0.00 6.08 38.55 4.16
2746 2934 5.303589 TCCCTACGTTCCTTGATATAAGGTG 59.696 44.000 0.00 1.08 38.55 4.00
2747 2935 5.461327 TCCCTACGTTCCTTGATATAAGGT 58.539 41.667 0.00 0.00 38.55 3.50
2748 2936 5.539193 ACTCCCTACGTTCCTTGATATAAGG 59.461 44.000 0.00 0.00 38.78 2.69
2749 2937 6.651975 ACTCCCTACGTTCCTTGATATAAG 57.348 41.667 0.00 0.00 0.00 1.73
2750 2938 8.716674 AATACTCCCTACGTTCCTTGATATAA 57.283 34.615 0.00 0.00 0.00 0.98
2751 2939 8.716674 AAATACTCCCTACGTTCCTTGATATA 57.283 34.615 0.00 0.00 0.00 0.86
2752 2940 7.613551 AAATACTCCCTACGTTCCTTGATAT 57.386 36.000 0.00 0.00 0.00 1.63
2753 2941 7.427989 AAAATACTCCCTACGTTCCTTGATA 57.572 36.000 0.00 0.00 0.00 2.15
2754 2942 5.952347 AAATACTCCCTACGTTCCTTGAT 57.048 39.130 0.00 0.00 0.00 2.57
2755 2943 5.750352 AAAATACTCCCTACGTTCCTTGA 57.250 39.130 0.00 0.00 0.00 3.02
2817 3005 9.151471 GCTTAGATTCAAATCAGTGTACTTGTA 57.849 33.333 5.59 0.00 37.89 2.41
2818 3006 7.880195 AGCTTAGATTCAAATCAGTGTACTTGT 59.120 33.333 5.59 0.00 37.89 3.16
2819 3007 8.261492 AGCTTAGATTCAAATCAGTGTACTTG 57.739 34.615 5.59 0.00 37.89 3.16
2820 3008 8.854614 AAGCTTAGATTCAAATCAGTGTACTT 57.145 30.769 0.00 0.00 37.89 2.24
2821 3009 8.097038 TGAAGCTTAGATTCAAATCAGTGTACT 58.903 33.333 10.67 0.00 37.89 2.73
2822 3010 8.256611 TGAAGCTTAGATTCAAATCAGTGTAC 57.743 34.615 10.67 0.00 37.89 2.90
2823 3011 8.846943 TTGAAGCTTAGATTCAAATCAGTGTA 57.153 30.769 21.15 0.00 42.18 2.90
2824 3012 7.663081 TCTTGAAGCTTAGATTCAAATCAGTGT 59.337 33.333 23.01 0.00 43.89 3.55
2825 3013 8.037382 TCTTGAAGCTTAGATTCAAATCAGTG 57.963 34.615 23.01 12.51 43.89 3.66
2826 3014 8.627208 TTCTTGAAGCTTAGATTCAAATCAGT 57.373 30.769 23.01 0.00 43.89 3.41
2827 3015 9.557338 CTTTCTTGAAGCTTAGATTCAAATCAG 57.443 33.333 23.01 15.36 43.89 2.90
2828 3016 9.071276 ACTTTCTTGAAGCTTAGATTCAAATCA 57.929 29.630 23.01 10.03 43.89 2.57
2831 3019 9.337396 TGTACTTTCTTGAAGCTTAGATTCAAA 57.663 29.630 23.01 13.18 43.89 2.69
2832 3020 8.902540 TGTACTTTCTTGAAGCTTAGATTCAA 57.097 30.769 21.82 21.82 42.73 2.69
2833 3021 8.902540 TTGTACTTTCTTGAAGCTTAGATTCA 57.097 30.769 8.97 8.97 39.04 2.57
2834 3022 9.818796 CTTTGTACTTTCTTGAAGCTTAGATTC 57.181 33.333 0.00 2.96 39.04 2.52
2835 3023 9.343539 ACTTTGTACTTTCTTGAAGCTTAGATT 57.656 29.630 0.00 0.00 39.04 2.40
2836 3024 8.910351 ACTTTGTACTTTCTTGAAGCTTAGAT 57.090 30.769 0.00 0.00 39.04 1.98
2837 3025 9.826574 TTACTTTGTACTTTCTTGAAGCTTAGA 57.173 29.630 0.00 0.00 39.04 2.10
2838 3026 9.865484 GTTACTTTGTACTTTCTTGAAGCTTAG 57.135 33.333 0.00 0.00 39.04 2.18
2839 3027 9.609346 AGTTACTTTGTACTTTCTTGAAGCTTA 57.391 29.630 0.00 0.00 39.04 3.09
2840 3028 8.507524 AGTTACTTTGTACTTTCTTGAAGCTT 57.492 30.769 0.00 0.00 39.04 3.74
2841 3029 7.226918 GGAGTTACTTTGTACTTTCTTGAAGCT 59.773 37.037 0.00 0.00 39.04 3.74
2842 3030 7.226918 AGGAGTTACTTTGTACTTTCTTGAAGC 59.773 37.037 0.00 0.00 39.04 3.86
2843 3031 8.664211 AGGAGTTACTTTGTACTTTCTTGAAG 57.336 34.615 0.00 0.00 41.32 3.02
2844 3032 7.713942 GGAGGAGTTACTTTGTACTTTCTTGAA 59.286 37.037 0.00 0.00 0.00 2.69
2845 3033 7.215085 GGAGGAGTTACTTTGTACTTTCTTGA 58.785 38.462 0.00 0.00 0.00 3.02
2846 3034 6.145696 CGGAGGAGTTACTTTGTACTTTCTTG 59.854 42.308 0.00 0.00 0.00 3.02
2847 3035 6.183360 ACGGAGGAGTTACTTTGTACTTTCTT 60.183 38.462 0.00 0.00 0.00 2.52
2848 3036 5.303845 ACGGAGGAGTTACTTTGTACTTTCT 59.696 40.000 0.00 0.00 0.00 2.52
2849 3037 5.536260 ACGGAGGAGTTACTTTGTACTTTC 58.464 41.667 0.00 0.00 0.00 2.62
2850 3038 5.536260 GACGGAGGAGTTACTTTGTACTTT 58.464 41.667 0.00 0.00 0.00 2.66
2851 3039 4.320788 CGACGGAGGAGTTACTTTGTACTT 60.321 45.833 0.00 0.00 0.00 2.24
2852 3040 3.190118 CGACGGAGGAGTTACTTTGTACT 59.810 47.826 0.00 0.00 0.00 2.73
2853 3041 3.496155 CGACGGAGGAGTTACTTTGTAC 58.504 50.000 0.00 0.00 0.00 2.90
2854 3042 2.489329 CCGACGGAGGAGTTACTTTGTA 59.511 50.000 8.64 0.00 0.00 2.41
2855 3043 1.271656 CCGACGGAGGAGTTACTTTGT 59.728 52.381 8.64 0.00 0.00 2.83
2856 3044 1.403780 CCCGACGGAGGAGTTACTTTG 60.404 57.143 17.49 0.00 0.00 2.77
2857 3045 0.893447 CCCGACGGAGGAGTTACTTT 59.107 55.000 17.49 0.00 0.00 2.66
2858 3046 0.969409 CCCCGACGGAGGAGTTACTT 60.969 60.000 17.49 0.00 0.00 2.24
2859 3047 1.379576 CCCCGACGGAGGAGTTACT 60.380 63.158 17.49 0.00 0.00 2.24
2860 3048 3.073742 GCCCCGACGGAGGAGTTAC 62.074 68.421 17.49 0.00 0.00 2.50
2861 3049 2.757099 GCCCCGACGGAGGAGTTA 60.757 66.667 17.49 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.