Multiple sequence alignment - TraesCS6B01G274200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G274200 chr6B 100.000 2690 0 0 1 2690 495544907 495542218 0.000000e+00 4968.0
1 TraesCS6B01G274200 chr6B 89.333 75 8 0 1 75 410210422 410210496 7.930000e-16 95.3
2 TraesCS6B01G274200 chr6B 89.333 75 8 0 1 75 410672342 410672416 7.930000e-16 95.3
3 TraesCS6B01G274200 chr6D 94.094 1744 46 20 562 2277 326760141 326761855 0.000000e+00 2597.0
4 TraesCS6B01G274200 chr6D 92.346 405 8 11 2298 2690 326761846 326762239 3.030000e-154 555.0
5 TraesCS6B01G274200 chr6A 91.641 1651 70 28 562 2178 465389203 465390819 0.000000e+00 2222.0
6 TraesCS6B01G274200 chr6A 92.443 397 16 6 2300 2690 465390876 465391264 3.030000e-154 555.0
7 TraesCS6B01G274200 chr2A 80.336 595 81 20 1098 1688 672234910 672234348 4.140000e-113 418.0
8 TraesCS6B01G274200 chr2D 80.342 585 80 18 1108 1688 527004241 527003688 6.930000e-111 411.0
9 TraesCS6B01G274200 chr2B 79.863 586 81 20 1108 1688 623869987 623869434 6.980000e-106 394.0
10 TraesCS6B01G274200 chr1D 96.889 225 6 1 1019 1243 468374556 468374333 2.530000e-100 375.0
11 TraesCS6B01G274200 chr1D 85.274 292 34 8 1105 1390 309088066 309088354 2.620000e-75 292.0
12 TraesCS6B01G274200 chr1B 85.135 296 35 8 1101 1390 418821437 418821729 7.280000e-76 294.0
13 TraesCS6B01G274200 chr1A 84.950 299 36 8 1098 1390 388849367 388849662 7.280000e-76 294.0
14 TraesCS6B01G274200 chr5A 86.139 101 13 1 1 100 14517144 14517044 1.020000e-19 108.0
15 TraesCS6B01G274200 chr5A 84.848 99 14 1 3 100 14494814 14494716 6.130000e-17 99.0
16 TraesCS6B01G274200 chr5A 84.848 99 14 1 3 100 14505965 14505867 6.130000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G274200 chr6B 495542218 495544907 2689 True 4968.0 4968 100.000 1 2690 1 chr6B.!!$R1 2689
1 TraesCS6B01G274200 chr6D 326760141 326762239 2098 False 1576.0 2597 93.220 562 2690 2 chr6D.!!$F1 2128
2 TraesCS6B01G274200 chr6A 465389203 465391264 2061 False 1388.5 2222 92.042 562 2690 2 chr6A.!!$F1 2128
3 TraesCS6B01G274200 chr2A 672234348 672234910 562 True 418.0 418 80.336 1098 1688 1 chr2A.!!$R1 590
4 TraesCS6B01G274200 chr2D 527003688 527004241 553 True 411.0 411 80.342 1108 1688 1 chr2D.!!$R1 580
5 TraesCS6B01G274200 chr2B 623869434 623869987 553 True 394.0 394 79.863 1108 1688 1 chr2B.!!$R1 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
369 370 0.037046 TCTTCGGCCTACGGAAAACC 60.037 55.0 0.0 0.0 44.45 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2338 2418 1.019673 CTCGCTACAGCCCTACGTAA 58.98 55.0 0.0 0.0 37.91 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.809815 GCTAAGGAAAGATGCAGATGAC 57.190 45.455 0.00 0.00 0.00 3.06
22 23 4.194640 GCTAAGGAAAGATGCAGATGACA 58.805 43.478 0.00 0.00 0.00 3.58
23 24 4.637534 GCTAAGGAAAGATGCAGATGACAA 59.362 41.667 0.00 0.00 0.00 3.18
24 25 5.448360 GCTAAGGAAAGATGCAGATGACAAC 60.448 44.000 0.00 0.00 0.00 3.32
25 26 4.025040 AGGAAAGATGCAGATGACAACA 57.975 40.909 0.00 0.00 0.00 3.33
26 27 4.401022 AGGAAAGATGCAGATGACAACAA 58.599 39.130 0.00 0.00 0.00 2.83
27 28 4.458295 AGGAAAGATGCAGATGACAACAAG 59.542 41.667 0.00 0.00 0.00 3.16
28 29 3.844577 AAGATGCAGATGACAACAAGC 57.155 42.857 0.00 0.00 0.00 4.01
29 30 1.736126 AGATGCAGATGACAACAAGCG 59.264 47.619 0.00 0.00 0.00 4.68
30 31 1.733912 GATGCAGATGACAACAAGCGA 59.266 47.619 0.00 0.00 0.00 4.93
31 32 1.150827 TGCAGATGACAACAAGCGAG 58.849 50.000 0.00 0.00 0.00 5.03
32 33 0.179205 GCAGATGACAACAAGCGAGC 60.179 55.000 0.00 0.00 0.00 5.03
33 34 0.094216 CAGATGACAACAAGCGAGCG 59.906 55.000 0.00 0.00 0.00 5.03
34 35 1.016130 AGATGACAACAAGCGAGCGG 61.016 55.000 0.00 0.00 0.00 5.52
35 36 1.970917 GATGACAACAAGCGAGCGGG 61.971 60.000 0.00 0.00 0.00 6.13
36 37 2.665185 GACAACAAGCGAGCGGGT 60.665 61.111 0.00 0.00 0.00 5.28
37 38 2.954753 GACAACAAGCGAGCGGGTG 61.955 63.158 6.35 6.35 0.00 4.61
38 39 3.726517 CAACAAGCGAGCGGGTGG 61.727 66.667 0.00 0.00 0.00 4.61
39 40 4.250305 AACAAGCGAGCGGGTGGT 62.250 61.111 0.00 0.00 0.00 4.16
40 41 3.767630 AACAAGCGAGCGGGTGGTT 62.768 57.895 0.00 0.00 35.46 3.67
41 42 2.978010 CAAGCGAGCGGGTGGTTT 60.978 61.111 0.00 0.00 0.00 3.27
42 43 2.203294 AAGCGAGCGGGTGGTTTT 60.203 55.556 0.00 0.00 0.00 2.43
43 44 1.071814 AAGCGAGCGGGTGGTTTTA 59.928 52.632 0.00 0.00 0.00 1.52
44 45 0.322187 AAGCGAGCGGGTGGTTTTAT 60.322 50.000 0.00 0.00 0.00 1.40
45 46 0.538118 AGCGAGCGGGTGGTTTTATA 59.462 50.000 0.00 0.00 0.00 0.98
46 47 0.935196 GCGAGCGGGTGGTTTTATAG 59.065 55.000 0.00 0.00 0.00 1.31
47 48 1.472026 GCGAGCGGGTGGTTTTATAGA 60.472 52.381 0.00 0.00 0.00 1.98
48 49 2.896168 CGAGCGGGTGGTTTTATAGAA 58.104 47.619 0.00 0.00 0.00 2.10
49 50 3.463944 CGAGCGGGTGGTTTTATAGAAT 58.536 45.455 0.00 0.00 0.00 2.40
50 51 3.247648 CGAGCGGGTGGTTTTATAGAATG 59.752 47.826 0.00 0.00 0.00 2.67
51 52 4.448210 GAGCGGGTGGTTTTATAGAATGA 58.552 43.478 0.00 0.00 0.00 2.57
52 53 4.451900 AGCGGGTGGTTTTATAGAATGAG 58.548 43.478 0.00 0.00 0.00 2.90
53 54 3.564225 GCGGGTGGTTTTATAGAATGAGG 59.436 47.826 0.00 0.00 0.00 3.86
54 55 4.134563 CGGGTGGTTTTATAGAATGAGGG 58.865 47.826 0.00 0.00 0.00 4.30
55 56 4.384868 CGGGTGGTTTTATAGAATGAGGGT 60.385 45.833 0.00 0.00 0.00 4.34
56 57 5.163280 CGGGTGGTTTTATAGAATGAGGGTA 60.163 44.000 0.00 0.00 0.00 3.69
57 58 6.633127 CGGGTGGTTTTATAGAATGAGGGTAA 60.633 42.308 0.00 0.00 0.00 2.85
58 59 6.771267 GGGTGGTTTTATAGAATGAGGGTAAG 59.229 42.308 0.00 0.00 0.00 2.34
59 60 6.771267 GGTGGTTTTATAGAATGAGGGTAAGG 59.229 42.308 0.00 0.00 0.00 2.69
60 61 6.771267 GTGGTTTTATAGAATGAGGGTAAGGG 59.229 42.308 0.00 0.00 0.00 3.95
61 62 6.126303 TGGTTTTATAGAATGAGGGTAAGGGG 60.126 42.308 0.00 0.00 0.00 4.79
62 63 6.126273 GGTTTTATAGAATGAGGGTAAGGGGT 60.126 42.308 0.00 0.00 0.00 4.95
63 64 7.351952 GTTTTATAGAATGAGGGTAAGGGGTT 58.648 38.462 0.00 0.00 0.00 4.11
64 65 6.758806 TTATAGAATGAGGGTAAGGGGTTC 57.241 41.667 0.00 0.00 0.00 3.62
65 66 1.838077 AGAATGAGGGTAAGGGGTTCG 59.162 52.381 0.00 0.00 0.00 3.95
66 67 0.255033 AATGAGGGTAAGGGGTTCGC 59.745 55.000 0.00 0.00 0.00 4.70
67 68 1.968050 ATGAGGGTAAGGGGTTCGCG 61.968 60.000 0.00 0.00 0.00 5.87
68 69 2.284112 AGGGTAAGGGGTTCGCGA 60.284 61.111 3.71 3.71 0.00 5.87
69 70 2.186125 GGGTAAGGGGTTCGCGAG 59.814 66.667 9.59 0.00 0.00 5.03
70 71 2.353610 GGGTAAGGGGTTCGCGAGA 61.354 63.158 9.59 0.00 39.20 4.04
81 82 2.451693 TCGCGAGAAAATTGGACGG 58.548 52.632 3.71 0.00 37.03 4.79
82 83 1.017177 TCGCGAGAAAATTGGACGGG 61.017 55.000 3.71 0.00 37.03 5.28
83 84 1.017177 CGCGAGAAAATTGGACGGGA 61.017 55.000 0.00 0.00 38.73 5.14
84 85 1.161843 GCGAGAAAATTGGACGGGAA 58.838 50.000 0.00 0.00 0.00 3.97
85 86 1.538075 GCGAGAAAATTGGACGGGAAA 59.462 47.619 0.00 0.00 0.00 3.13
86 87 2.414161 GCGAGAAAATTGGACGGGAAAG 60.414 50.000 0.00 0.00 0.00 2.62
87 88 3.071479 CGAGAAAATTGGACGGGAAAGA 58.929 45.455 0.00 0.00 0.00 2.52
88 89 3.500680 CGAGAAAATTGGACGGGAAAGAA 59.499 43.478 0.00 0.00 0.00 2.52
89 90 4.023536 CGAGAAAATTGGACGGGAAAGAAA 60.024 41.667 0.00 0.00 0.00 2.52
90 91 5.506649 CGAGAAAATTGGACGGGAAAGAAAA 60.507 40.000 0.00 0.00 0.00 2.29
91 92 6.419484 AGAAAATTGGACGGGAAAGAAAAT 57.581 33.333 0.00 0.00 0.00 1.82
92 93 6.223120 AGAAAATTGGACGGGAAAGAAAATG 58.777 36.000 0.00 0.00 0.00 2.32
93 94 5.799827 AAATTGGACGGGAAAGAAAATGA 57.200 34.783 0.00 0.00 0.00 2.57
94 95 4.783764 ATTGGACGGGAAAGAAAATGAC 57.216 40.909 0.00 0.00 0.00 3.06
95 96 3.216187 TGGACGGGAAAGAAAATGACA 57.784 42.857 0.00 0.00 0.00 3.58
96 97 3.146066 TGGACGGGAAAGAAAATGACAG 58.854 45.455 0.00 0.00 0.00 3.51
97 98 2.488153 GGACGGGAAAGAAAATGACAGG 59.512 50.000 0.00 0.00 0.00 4.00
98 99 3.408634 GACGGGAAAGAAAATGACAGGA 58.591 45.455 0.00 0.00 0.00 3.86
99 100 3.818773 GACGGGAAAGAAAATGACAGGAA 59.181 43.478 0.00 0.00 0.00 3.36
100 101 3.821033 ACGGGAAAGAAAATGACAGGAAG 59.179 43.478 0.00 0.00 0.00 3.46
101 102 3.191371 CGGGAAAGAAAATGACAGGAAGG 59.809 47.826 0.00 0.00 0.00 3.46
102 103 4.407365 GGGAAAGAAAATGACAGGAAGGA 58.593 43.478 0.00 0.00 0.00 3.36
103 104 4.832823 GGGAAAGAAAATGACAGGAAGGAA 59.167 41.667 0.00 0.00 0.00 3.36
104 105 5.047731 GGGAAAGAAAATGACAGGAAGGAAG 60.048 44.000 0.00 0.00 0.00 3.46
105 106 5.770162 GGAAAGAAAATGACAGGAAGGAAGA 59.230 40.000 0.00 0.00 0.00 2.87
106 107 6.435591 GGAAAGAAAATGACAGGAAGGAAGAT 59.564 38.462 0.00 0.00 0.00 2.40
107 108 6.830873 AAGAAAATGACAGGAAGGAAGATG 57.169 37.500 0.00 0.00 0.00 2.90
108 109 6.131972 AGAAAATGACAGGAAGGAAGATGA 57.868 37.500 0.00 0.00 0.00 2.92
109 110 5.942826 AGAAAATGACAGGAAGGAAGATGAC 59.057 40.000 0.00 0.00 0.00 3.06
110 111 3.533606 ATGACAGGAAGGAAGATGACG 57.466 47.619 0.00 0.00 0.00 4.35
111 112 2.525368 TGACAGGAAGGAAGATGACGA 58.475 47.619 0.00 0.00 0.00 4.20
112 113 2.493675 TGACAGGAAGGAAGATGACGAG 59.506 50.000 0.00 0.00 0.00 4.18
113 114 2.755655 GACAGGAAGGAAGATGACGAGA 59.244 50.000 0.00 0.00 0.00 4.04
114 115 3.165875 ACAGGAAGGAAGATGACGAGAA 58.834 45.455 0.00 0.00 0.00 2.87
115 116 3.578716 ACAGGAAGGAAGATGACGAGAAA 59.421 43.478 0.00 0.00 0.00 2.52
116 117 3.929610 CAGGAAGGAAGATGACGAGAAAC 59.070 47.826 0.00 0.00 0.00 2.78
117 118 3.578716 AGGAAGGAAGATGACGAGAAACA 59.421 43.478 0.00 0.00 0.00 2.83
118 119 4.040461 AGGAAGGAAGATGACGAGAAACAA 59.960 41.667 0.00 0.00 0.00 2.83
119 120 4.390297 GGAAGGAAGATGACGAGAAACAAG 59.610 45.833 0.00 0.00 0.00 3.16
120 121 4.873746 AGGAAGATGACGAGAAACAAGA 57.126 40.909 0.00 0.00 0.00 3.02
121 122 5.413309 AGGAAGATGACGAGAAACAAGAT 57.587 39.130 0.00 0.00 0.00 2.40
122 123 5.174395 AGGAAGATGACGAGAAACAAGATG 58.826 41.667 0.00 0.00 0.00 2.90
123 124 4.932200 GGAAGATGACGAGAAACAAGATGT 59.068 41.667 0.00 0.00 0.00 3.06
124 125 5.062809 GGAAGATGACGAGAAACAAGATGTC 59.937 44.000 0.00 0.00 0.00 3.06
125 126 4.169508 AGATGACGAGAAACAAGATGTCG 58.830 43.478 0.00 0.00 39.25 4.35
126 127 2.672714 TGACGAGAAACAAGATGTCGG 58.327 47.619 0.00 0.00 37.83 4.79
127 128 1.993370 GACGAGAAACAAGATGTCGGG 59.007 52.381 0.00 0.00 37.83 5.14
128 129 1.616865 ACGAGAAACAAGATGTCGGGA 59.383 47.619 0.00 0.00 37.83 5.14
129 130 2.036733 ACGAGAAACAAGATGTCGGGAA 59.963 45.455 0.00 0.00 37.83 3.97
130 131 3.064207 CGAGAAACAAGATGTCGGGAAA 58.936 45.455 0.00 0.00 30.73 3.13
131 132 3.123621 CGAGAAACAAGATGTCGGGAAAG 59.876 47.826 0.00 0.00 30.73 2.62
132 133 4.315803 GAGAAACAAGATGTCGGGAAAGA 58.684 43.478 0.00 0.00 0.00 2.52
133 134 4.714632 AGAAACAAGATGTCGGGAAAGAA 58.285 39.130 0.00 0.00 0.00 2.52
134 135 5.130350 AGAAACAAGATGTCGGGAAAGAAA 58.870 37.500 0.00 0.00 0.00 2.52
135 136 5.770162 AGAAACAAGATGTCGGGAAAGAAAT 59.230 36.000 0.00 0.00 0.00 2.17
136 137 6.265422 AGAAACAAGATGTCGGGAAAGAAATT 59.735 34.615 0.00 0.00 0.00 1.82
137 138 5.376854 ACAAGATGTCGGGAAAGAAATTG 57.623 39.130 0.00 0.00 0.00 2.32
138 139 4.218417 ACAAGATGTCGGGAAAGAAATTGG 59.782 41.667 0.00 0.00 0.00 3.16
139 140 2.755103 AGATGTCGGGAAAGAAATTGGC 59.245 45.455 0.00 0.00 0.00 4.52
140 141 0.878416 TGTCGGGAAAGAAATTGGCG 59.122 50.000 0.00 0.00 0.00 5.69
141 142 0.170339 GTCGGGAAAGAAATTGGCGG 59.830 55.000 0.00 0.00 0.00 6.13
142 143 0.963355 TCGGGAAAGAAATTGGCGGG 60.963 55.000 0.00 0.00 0.00 6.13
143 144 0.963355 CGGGAAAGAAATTGGCGGGA 60.963 55.000 0.00 0.00 0.00 5.14
144 145 1.262417 GGGAAAGAAATTGGCGGGAA 58.738 50.000 0.00 0.00 0.00 3.97
145 146 1.831106 GGGAAAGAAATTGGCGGGAAT 59.169 47.619 0.00 0.00 0.00 3.01
146 147 3.028130 GGGAAAGAAATTGGCGGGAATA 58.972 45.455 0.00 0.00 0.00 1.75
147 148 3.449377 GGGAAAGAAATTGGCGGGAATAA 59.551 43.478 0.00 0.00 0.00 1.40
148 149 4.081365 GGGAAAGAAATTGGCGGGAATAAA 60.081 41.667 0.00 0.00 0.00 1.40
149 150 5.396324 GGGAAAGAAATTGGCGGGAATAAAT 60.396 40.000 0.00 0.00 0.00 1.40
150 151 5.523552 GGAAAGAAATTGGCGGGAATAAATG 59.476 40.000 0.00 0.00 0.00 2.32
151 152 4.670896 AGAAATTGGCGGGAATAAATGG 57.329 40.909 0.00 0.00 0.00 3.16
152 153 4.285863 AGAAATTGGCGGGAATAAATGGA 58.714 39.130 0.00 0.00 0.00 3.41
153 154 4.714308 AGAAATTGGCGGGAATAAATGGAA 59.286 37.500 0.00 0.00 0.00 3.53
154 155 4.670896 AATTGGCGGGAATAAATGGAAG 57.329 40.909 0.00 0.00 0.00 3.46
155 156 2.065899 TGGCGGGAATAAATGGAAGG 57.934 50.000 0.00 0.00 0.00 3.46
156 157 1.566703 TGGCGGGAATAAATGGAAGGA 59.433 47.619 0.00 0.00 0.00 3.36
157 158 2.024846 TGGCGGGAATAAATGGAAGGAA 60.025 45.455 0.00 0.00 0.00 3.36
158 159 3.028130 GGCGGGAATAAATGGAAGGAAA 58.972 45.455 0.00 0.00 0.00 3.13
159 160 3.068165 GGCGGGAATAAATGGAAGGAAAG 59.932 47.826 0.00 0.00 0.00 2.62
160 161 3.068165 GCGGGAATAAATGGAAGGAAAGG 59.932 47.826 0.00 0.00 0.00 3.11
161 162 3.636764 CGGGAATAAATGGAAGGAAAGGG 59.363 47.826 0.00 0.00 0.00 3.95
162 163 4.620723 GGGAATAAATGGAAGGAAAGGGT 58.379 43.478 0.00 0.00 0.00 4.34
163 164 5.030147 GGGAATAAATGGAAGGAAAGGGTT 58.970 41.667 0.00 0.00 0.00 4.11
164 165 5.104941 GGGAATAAATGGAAGGAAAGGGTTG 60.105 44.000 0.00 0.00 0.00 3.77
165 166 5.719563 GGAATAAATGGAAGGAAAGGGTTGA 59.280 40.000 0.00 0.00 0.00 3.18
166 167 6.351033 GGAATAAATGGAAGGAAAGGGTTGAC 60.351 42.308 0.00 0.00 0.00 3.18
167 168 2.200373 ATGGAAGGAAAGGGTTGACG 57.800 50.000 0.00 0.00 0.00 4.35
168 169 0.109723 TGGAAGGAAAGGGTTGACGG 59.890 55.000 0.00 0.00 0.00 4.79
169 170 0.608308 GGAAGGAAAGGGTTGACGGG 60.608 60.000 0.00 0.00 0.00 5.28
170 171 0.399075 GAAGGAAAGGGTTGACGGGA 59.601 55.000 0.00 0.00 0.00 5.14
171 172 0.848053 AAGGAAAGGGTTGACGGGAA 59.152 50.000 0.00 0.00 0.00 3.97
172 173 0.848053 AGGAAAGGGTTGACGGGAAA 59.152 50.000 0.00 0.00 0.00 3.13
173 174 1.215924 AGGAAAGGGTTGACGGGAAAA 59.784 47.619 0.00 0.00 0.00 2.29
174 175 2.033372 GGAAAGGGTTGACGGGAAAAA 58.967 47.619 0.00 0.00 0.00 1.94
201 202 2.285977 GGGAACGCTACATGGTTAAGG 58.714 52.381 0.00 0.00 0.00 2.69
202 203 2.355412 GGGAACGCTACATGGTTAAGGT 60.355 50.000 0.00 0.00 0.00 3.50
203 204 2.676342 GGAACGCTACATGGTTAAGGTG 59.324 50.000 0.00 0.00 0.00 4.00
204 205 2.396590 ACGCTACATGGTTAAGGTGG 57.603 50.000 0.00 0.00 0.00 4.61
205 206 1.065709 ACGCTACATGGTTAAGGTGGG 60.066 52.381 0.00 0.00 0.00 4.61
206 207 1.745827 CGCTACATGGTTAAGGTGGGG 60.746 57.143 0.00 0.00 0.00 4.96
207 208 1.562475 GCTACATGGTTAAGGTGGGGA 59.438 52.381 0.00 0.00 0.00 4.81
208 209 2.025699 GCTACATGGTTAAGGTGGGGAA 60.026 50.000 0.00 0.00 0.00 3.97
209 210 3.562609 GCTACATGGTTAAGGTGGGGAAA 60.563 47.826 0.00 0.00 0.00 3.13
210 211 2.884320 ACATGGTTAAGGTGGGGAAAC 58.116 47.619 0.00 0.00 0.00 2.78
226 227 3.921677 GGAAACCATGTACTCGACAAGA 58.078 45.455 0.00 0.00 42.78 3.02
227 228 4.504858 GGAAACCATGTACTCGACAAGAT 58.495 43.478 0.00 0.00 42.78 2.40
228 229 5.657474 GGAAACCATGTACTCGACAAGATA 58.343 41.667 0.00 0.00 42.78 1.98
229 230 6.103997 GGAAACCATGTACTCGACAAGATAA 58.896 40.000 0.00 0.00 42.78 1.75
230 231 6.592607 GGAAACCATGTACTCGACAAGATAAA 59.407 38.462 0.00 0.00 42.78 1.40
231 232 6.963049 AACCATGTACTCGACAAGATAAAC 57.037 37.500 0.00 0.00 42.78 2.01
232 233 5.416947 ACCATGTACTCGACAAGATAAACC 58.583 41.667 0.00 0.00 42.78 3.27
233 234 5.046878 ACCATGTACTCGACAAGATAAACCA 60.047 40.000 0.00 0.00 42.78 3.67
234 235 5.520288 CCATGTACTCGACAAGATAAACCAG 59.480 44.000 0.00 0.00 42.78 4.00
235 236 5.717078 TGTACTCGACAAGATAAACCAGT 57.283 39.130 0.00 0.00 34.15 4.00
236 237 6.092955 TGTACTCGACAAGATAAACCAGTT 57.907 37.500 0.00 0.00 34.15 3.16
237 238 5.924254 TGTACTCGACAAGATAAACCAGTTG 59.076 40.000 0.00 0.00 34.15 3.16
238 239 4.957296 ACTCGACAAGATAAACCAGTTGT 58.043 39.130 0.00 0.00 35.84 3.32
239 240 4.989168 ACTCGACAAGATAAACCAGTTGTC 59.011 41.667 4.35 4.35 43.49 3.18
242 243 5.917541 GACAAGATAAACCAGTTGTCGAA 57.082 39.130 0.00 0.00 39.43 3.71
243 244 6.295039 GACAAGATAAACCAGTTGTCGAAA 57.705 37.500 0.00 0.00 39.43 3.46
244 245 6.687081 ACAAGATAAACCAGTTGTCGAAAA 57.313 33.333 0.00 0.00 32.82 2.29
245 246 7.090953 ACAAGATAAACCAGTTGTCGAAAAA 57.909 32.000 0.00 0.00 32.82 1.94
246 247 7.193595 ACAAGATAAACCAGTTGTCGAAAAAG 58.806 34.615 0.00 0.00 32.82 2.27
247 248 6.313744 AGATAAACCAGTTGTCGAAAAAGG 57.686 37.500 6.54 6.54 32.82 3.11
248 249 6.059484 AGATAAACCAGTTGTCGAAAAAGGA 58.941 36.000 13.51 0.00 32.82 3.36
249 250 4.365899 AAACCAGTTGTCGAAAAAGGAC 57.634 40.909 13.51 0.00 34.99 3.85
250 251 3.277142 ACCAGTTGTCGAAAAAGGACT 57.723 42.857 13.51 0.00 35.45 3.85
251 252 3.203716 ACCAGTTGTCGAAAAAGGACTC 58.796 45.455 13.51 0.00 35.45 3.36
252 253 3.118371 ACCAGTTGTCGAAAAAGGACTCT 60.118 43.478 13.51 0.00 35.45 3.24
253 254 3.877508 CCAGTTGTCGAAAAAGGACTCTT 59.122 43.478 2.56 0.00 35.45 2.85
254 255 4.024809 CCAGTTGTCGAAAAAGGACTCTTC 60.025 45.833 2.56 0.00 35.45 2.87
255 256 3.802685 AGTTGTCGAAAAAGGACTCTTCG 59.197 43.478 0.00 9.12 42.49 3.79
256 257 3.720949 TGTCGAAAAAGGACTCTTCGA 57.279 42.857 12.42 12.42 46.23 3.71
258 259 3.022607 TCGAAAAAGGACTCTTCGACC 57.977 47.619 12.42 0.00 44.26 4.79
259 260 2.626743 TCGAAAAAGGACTCTTCGACCT 59.373 45.455 12.42 0.00 44.26 3.85
260 261 2.731976 CGAAAAAGGACTCTTCGACCTG 59.268 50.000 9.59 0.00 43.53 4.00
261 262 2.841442 AAAAGGACTCTTCGACCTGG 57.159 50.000 0.00 0.00 37.85 4.45
262 263 1.718280 AAAGGACTCTTCGACCTGGT 58.282 50.000 0.00 0.00 37.85 4.00
263 264 2.599408 AAGGACTCTTCGACCTGGTA 57.401 50.000 0.00 0.00 37.85 3.25
264 265 2.599408 AGGACTCTTCGACCTGGTAA 57.401 50.000 0.00 0.00 36.41 2.85
265 266 2.885616 AGGACTCTTCGACCTGGTAAA 58.114 47.619 0.00 0.00 36.41 2.01
266 267 3.236896 AGGACTCTTCGACCTGGTAAAA 58.763 45.455 0.00 0.00 36.41 1.52
267 268 3.644738 AGGACTCTTCGACCTGGTAAAAA 59.355 43.478 0.00 0.00 36.41 1.94
268 269 3.744942 GGACTCTTCGACCTGGTAAAAAC 59.255 47.826 0.00 0.00 0.00 2.43
269 270 3.736720 ACTCTTCGACCTGGTAAAAACC 58.263 45.455 0.00 0.00 0.00 3.27
270 271 3.135167 ACTCTTCGACCTGGTAAAAACCA 59.865 43.478 0.00 0.00 38.25 3.67
271 272 3.469739 TCTTCGACCTGGTAAAAACCAC 58.530 45.455 0.00 0.00 35.63 4.16
272 273 3.118334 TCTTCGACCTGGTAAAAACCACA 60.118 43.478 0.00 0.00 35.63 4.17
273 274 2.841215 TCGACCTGGTAAAAACCACAG 58.159 47.619 0.00 0.00 35.63 3.66
274 275 2.435069 TCGACCTGGTAAAAACCACAGA 59.565 45.455 0.00 0.00 35.63 3.41
275 276 2.806244 CGACCTGGTAAAAACCACAGAG 59.194 50.000 0.00 0.00 35.63 3.35
276 277 3.743269 CGACCTGGTAAAAACCACAGAGT 60.743 47.826 0.00 0.00 35.63 3.24
277 278 3.551846 ACCTGGTAAAAACCACAGAGTG 58.448 45.455 0.00 0.00 35.63 3.51
286 287 3.271014 CACAGAGTGGTGCCATGC 58.729 61.111 0.00 0.00 31.10 4.06
287 288 1.601477 CACAGAGTGGTGCCATGCA 60.601 57.895 0.00 0.00 35.60 3.96
288 289 1.151221 ACAGAGTGGTGCCATGCAA 59.849 52.632 0.00 0.00 41.47 4.08
294 295 2.568090 GGTGCCATGCAACTTCGG 59.432 61.111 0.00 0.00 43.73 4.30
295 296 2.268076 GGTGCCATGCAACTTCGGT 61.268 57.895 0.00 0.00 43.73 4.69
296 297 1.210155 GTGCCATGCAACTTCGGTC 59.790 57.895 0.00 0.00 41.47 4.79
297 298 1.073025 TGCCATGCAACTTCGGTCT 59.927 52.632 0.00 0.00 34.76 3.85
298 299 0.323302 TGCCATGCAACTTCGGTCTA 59.677 50.000 0.00 0.00 34.76 2.59
299 300 0.727398 GCCATGCAACTTCGGTCTAC 59.273 55.000 0.00 0.00 0.00 2.59
300 301 1.943968 GCCATGCAACTTCGGTCTACA 60.944 52.381 0.00 0.00 0.00 2.74
301 302 2.002586 CCATGCAACTTCGGTCTACAG 58.997 52.381 0.00 0.00 0.00 2.74
302 303 2.612972 CCATGCAACTTCGGTCTACAGT 60.613 50.000 0.00 0.00 0.00 3.55
303 304 2.902705 TGCAACTTCGGTCTACAGTT 57.097 45.000 0.00 0.00 0.00 3.16
304 305 3.188159 TGCAACTTCGGTCTACAGTTT 57.812 42.857 0.00 0.00 0.00 2.66
305 306 4.325028 TGCAACTTCGGTCTACAGTTTA 57.675 40.909 0.00 0.00 0.00 2.01
306 307 4.053295 TGCAACTTCGGTCTACAGTTTAC 58.947 43.478 0.00 0.00 0.00 2.01
307 308 3.120782 GCAACTTCGGTCTACAGTTTACG 59.879 47.826 0.00 0.00 0.00 3.18
308 309 2.938869 ACTTCGGTCTACAGTTTACGC 58.061 47.619 0.00 0.00 0.00 4.42
309 310 1.909532 CTTCGGTCTACAGTTTACGCG 59.090 52.381 3.53 3.53 0.00 6.01
310 311 1.155889 TCGGTCTACAGTTTACGCGA 58.844 50.000 15.93 0.00 0.00 5.87
311 312 1.535028 TCGGTCTACAGTTTACGCGAA 59.465 47.619 15.93 0.00 0.00 4.70
312 313 1.909532 CGGTCTACAGTTTACGCGAAG 59.090 52.381 15.93 0.00 0.00 3.79
313 314 2.413239 CGGTCTACAGTTTACGCGAAGA 60.413 50.000 15.93 0.00 0.00 2.87
314 315 3.169733 GGTCTACAGTTTACGCGAAGAG 58.830 50.000 15.93 0.00 0.00 2.85
315 316 3.365767 GGTCTACAGTTTACGCGAAGAGT 60.366 47.826 15.93 6.00 46.42 3.24
316 317 4.225208 GTCTACAGTTTACGCGAAGAGTT 58.775 43.478 15.93 0.00 37.08 3.01
317 318 4.088213 GTCTACAGTTTACGCGAAGAGTTG 59.912 45.833 15.93 6.42 37.08 3.16
318 319 2.132762 ACAGTTTACGCGAAGAGTTGG 58.867 47.619 15.93 0.00 37.08 3.77
319 320 1.459592 CAGTTTACGCGAAGAGTTGGG 59.540 52.381 15.93 0.00 37.08 4.12
320 321 0.165295 GTTTACGCGAAGAGTTGGGC 59.835 55.000 15.93 0.00 37.08 5.36
321 322 0.952010 TTTACGCGAAGAGTTGGGCC 60.952 55.000 15.93 0.00 37.08 5.80
322 323 1.823169 TTACGCGAAGAGTTGGGCCT 61.823 55.000 15.93 0.00 37.08 5.19
323 324 2.501223 TACGCGAAGAGTTGGGCCTG 62.501 60.000 15.93 0.00 37.08 4.85
324 325 2.347490 GCGAAGAGTTGGGCCTGA 59.653 61.111 4.53 0.00 0.00 3.86
325 326 1.743252 GCGAAGAGTTGGGCCTGAG 60.743 63.158 4.53 0.00 0.00 3.35
326 327 1.975327 CGAAGAGTTGGGCCTGAGA 59.025 57.895 4.53 0.00 0.00 3.27
327 328 0.108424 CGAAGAGTTGGGCCTGAGAG 60.108 60.000 4.53 0.00 0.00 3.20
328 329 0.251634 GAAGAGTTGGGCCTGAGAGG 59.748 60.000 4.53 0.00 38.80 3.69
339 340 2.106477 CCTGAGAGGCCTCTTTGAAC 57.894 55.000 35.48 22.39 40.61 3.18
340 341 1.627834 CCTGAGAGGCCTCTTTGAACT 59.372 52.381 35.48 12.79 40.61 3.01
341 342 2.834549 CCTGAGAGGCCTCTTTGAACTA 59.165 50.000 35.48 14.82 40.61 2.24
342 343 3.118811 CCTGAGAGGCCTCTTTGAACTAG 60.119 52.174 35.48 21.67 40.61 2.57
343 344 3.766591 CTGAGAGGCCTCTTTGAACTAGA 59.233 47.826 35.48 10.62 40.61 2.43
344 345 3.766591 TGAGAGGCCTCTTTGAACTAGAG 59.233 47.826 35.48 0.00 40.61 2.43
345 346 3.767131 GAGAGGCCTCTTTGAACTAGAGT 59.233 47.826 35.48 9.51 40.61 3.24
346 347 4.936802 AGAGGCCTCTTTGAACTAGAGTA 58.063 43.478 30.40 0.00 37.93 2.59
347 348 5.334421 AGAGGCCTCTTTGAACTAGAGTAA 58.666 41.667 30.40 0.00 37.93 2.24
348 349 5.780793 AGAGGCCTCTTTGAACTAGAGTAAA 59.219 40.000 30.40 0.00 37.93 2.01
349 350 5.795972 AGGCCTCTTTGAACTAGAGTAAAC 58.204 41.667 0.00 0.00 37.93 2.01
350 351 5.544562 AGGCCTCTTTGAACTAGAGTAAACT 59.455 40.000 0.00 0.00 37.93 2.66
351 352 5.870433 GGCCTCTTTGAACTAGAGTAAACTC 59.130 44.000 0.00 1.72 43.17 3.01
362 363 2.795117 GAGTAAACTCTTCGGCCTACG 58.205 52.381 0.00 0.00 40.96 3.51
363 364 1.475682 AGTAAACTCTTCGGCCTACGG 59.524 52.381 0.00 0.00 44.45 4.02
364 365 1.474077 GTAAACTCTTCGGCCTACGGA 59.526 52.381 0.00 0.00 44.45 4.69
365 366 0.971386 AAACTCTTCGGCCTACGGAA 59.029 50.000 0.00 0.00 44.45 4.30
366 367 0.971386 AACTCTTCGGCCTACGGAAA 59.029 50.000 0.00 0.00 44.45 3.13
367 368 0.971386 ACTCTTCGGCCTACGGAAAA 59.029 50.000 0.00 0.00 44.45 2.29
368 369 1.337541 ACTCTTCGGCCTACGGAAAAC 60.338 52.381 0.00 0.00 44.45 2.43
369 370 0.037046 TCTTCGGCCTACGGAAAACC 60.037 55.000 0.00 0.00 44.45 3.27
370 371 0.320946 CTTCGGCCTACGGAAAACCA 60.321 55.000 0.00 0.00 44.45 3.67
371 372 0.108207 TTCGGCCTACGGAAAACCAA 59.892 50.000 0.00 0.00 44.45 3.67
372 373 0.108207 TCGGCCTACGGAAAACCAAA 59.892 50.000 0.00 0.00 44.45 3.28
373 374 0.519961 CGGCCTACGGAAAACCAAAG 59.480 55.000 0.00 0.00 39.42 2.77
374 375 1.878948 CGGCCTACGGAAAACCAAAGA 60.879 52.381 0.00 0.00 39.42 2.52
375 376 1.810755 GGCCTACGGAAAACCAAAGAG 59.189 52.381 0.00 0.00 0.00 2.85
376 377 2.501261 GCCTACGGAAAACCAAAGAGT 58.499 47.619 0.00 0.00 0.00 3.24
377 378 2.225727 GCCTACGGAAAACCAAAGAGTG 59.774 50.000 0.00 0.00 0.00 3.51
378 379 2.225727 CCTACGGAAAACCAAAGAGTGC 59.774 50.000 0.00 0.00 0.00 4.40
379 380 2.052782 ACGGAAAACCAAAGAGTGCT 57.947 45.000 0.00 0.00 0.00 4.40
380 381 2.375146 ACGGAAAACCAAAGAGTGCTT 58.625 42.857 0.00 0.00 35.37 3.91
381 382 2.758423 ACGGAAAACCAAAGAGTGCTTT 59.242 40.909 0.00 0.00 44.93 3.51
382 383 3.194755 ACGGAAAACCAAAGAGTGCTTTT 59.805 39.130 0.00 0.00 42.27 2.27
383 384 3.796717 CGGAAAACCAAAGAGTGCTTTTC 59.203 43.478 0.00 0.00 42.27 2.29
384 385 3.796717 GGAAAACCAAAGAGTGCTTTTCG 59.203 43.478 0.00 0.00 42.27 3.46
385 386 3.436700 AAACCAAAGAGTGCTTTTCGG 57.563 42.857 0.00 0.00 42.27 4.30
386 387 0.668535 ACCAAAGAGTGCTTTTCGGC 59.331 50.000 0.00 0.00 42.27 5.54
387 388 0.039165 CCAAAGAGTGCTTTTCGGCC 60.039 55.000 0.00 0.00 42.27 6.13
388 389 0.039165 CAAAGAGTGCTTTTCGGCCC 60.039 55.000 0.00 0.00 42.27 5.80
389 390 0.467290 AAAGAGTGCTTTTCGGCCCA 60.467 50.000 0.00 0.00 41.43 5.36
390 391 0.251341 AAGAGTGCTTTTCGGCCCAT 60.251 50.000 0.00 0.00 0.00 4.00
391 392 0.618458 AGAGTGCTTTTCGGCCCATA 59.382 50.000 0.00 0.00 0.00 2.74
392 393 1.004277 AGAGTGCTTTTCGGCCCATAA 59.996 47.619 0.00 0.00 0.00 1.90
393 394 1.132453 GAGTGCTTTTCGGCCCATAAC 59.868 52.381 0.00 0.00 0.00 1.89
394 395 1.173913 GTGCTTTTCGGCCCATAACT 58.826 50.000 0.00 0.00 0.00 2.24
395 396 1.135402 GTGCTTTTCGGCCCATAACTG 60.135 52.381 0.00 0.00 0.00 3.16
396 397 0.179137 GCTTTTCGGCCCATAACTGC 60.179 55.000 0.00 0.00 0.00 4.40
397 398 0.098728 CTTTTCGGCCCATAACTGCG 59.901 55.000 0.00 0.00 0.00 5.18
398 399 0.606944 TTTTCGGCCCATAACTGCGT 60.607 50.000 0.00 0.00 0.00 5.24
399 400 1.022451 TTTCGGCCCATAACTGCGTC 61.022 55.000 0.00 0.00 0.00 5.19
400 401 1.895020 TTCGGCCCATAACTGCGTCT 61.895 55.000 0.00 0.00 0.00 4.18
401 402 1.883084 CGGCCCATAACTGCGTCTC 60.883 63.158 0.00 0.00 0.00 3.36
402 403 1.522569 GGCCCATAACTGCGTCTCT 59.477 57.895 0.00 0.00 0.00 3.10
403 404 0.107654 GGCCCATAACTGCGTCTCTT 60.108 55.000 0.00 0.00 0.00 2.85
404 405 1.291132 GCCCATAACTGCGTCTCTTC 58.709 55.000 0.00 0.00 0.00 2.87
405 406 1.560923 CCCATAACTGCGTCTCTTCG 58.439 55.000 0.00 0.00 0.00 3.79
406 407 1.560923 CCATAACTGCGTCTCTTCGG 58.439 55.000 0.00 0.00 0.00 4.30
407 408 0.924090 CATAACTGCGTCTCTTCGGC 59.076 55.000 0.00 0.00 0.00 5.54
408 409 0.818296 ATAACTGCGTCTCTTCGGCT 59.182 50.000 0.00 0.00 0.00 5.52
409 410 0.601558 TAACTGCGTCTCTTCGGCTT 59.398 50.000 0.00 0.00 0.00 4.35
410 411 0.601558 AACTGCGTCTCTTCGGCTTA 59.398 50.000 0.00 0.00 0.00 3.09
411 412 0.601558 ACTGCGTCTCTTCGGCTTAA 59.398 50.000 0.00 0.00 0.00 1.85
412 413 1.204941 ACTGCGTCTCTTCGGCTTAAT 59.795 47.619 0.00 0.00 0.00 1.40
413 414 2.426024 ACTGCGTCTCTTCGGCTTAATA 59.574 45.455 0.00 0.00 0.00 0.98
414 415 3.068307 ACTGCGTCTCTTCGGCTTAATAT 59.932 43.478 0.00 0.00 0.00 1.28
415 416 4.277672 ACTGCGTCTCTTCGGCTTAATATA 59.722 41.667 0.00 0.00 0.00 0.86
416 417 4.543692 TGCGTCTCTTCGGCTTAATATAC 58.456 43.478 0.00 0.00 0.00 1.47
417 418 4.037089 TGCGTCTCTTCGGCTTAATATACA 59.963 41.667 0.00 0.00 0.00 2.29
418 419 4.382160 GCGTCTCTTCGGCTTAATATACAC 59.618 45.833 0.00 0.00 0.00 2.90
419 420 4.916249 CGTCTCTTCGGCTTAATATACACC 59.084 45.833 0.00 0.00 0.00 4.16
420 421 4.916249 GTCTCTTCGGCTTAATATACACCG 59.084 45.833 0.00 0.00 45.15 4.94
427 428 5.466819 CGGCTTAATATACACCGAAGATCA 58.533 41.667 0.00 0.00 46.71 2.92
428 429 5.924254 CGGCTTAATATACACCGAAGATCAA 59.076 40.000 0.00 0.00 46.71 2.57
429 430 6.590292 CGGCTTAATATACACCGAAGATCAAT 59.410 38.462 0.00 0.00 46.71 2.57
430 431 7.201444 CGGCTTAATATACACCGAAGATCAATC 60.201 40.741 0.00 0.00 46.71 2.67
431 432 7.201444 GGCTTAATATACACCGAAGATCAATCG 60.201 40.741 12.46 12.46 39.92 3.34
432 433 7.328737 GCTTAATATACACCGAAGATCAATCGT 59.671 37.037 16.55 4.62 38.60 3.73
433 434 8.738199 TTAATATACACCGAAGATCAATCGTC 57.262 34.615 16.55 0.00 38.60 4.20
438 439 3.669354 GAAGATCAATCGTCGGCCT 57.331 52.632 0.00 0.00 0.00 5.19
439 440 2.795175 GAAGATCAATCGTCGGCCTA 57.205 50.000 0.00 0.00 0.00 3.93
440 441 3.093717 GAAGATCAATCGTCGGCCTAA 57.906 47.619 0.00 0.00 0.00 2.69
441 442 3.454375 GAAGATCAATCGTCGGCCTAAA 58.546 45.455 0.00 0.00 0.00 1.85
442 443 3.099267 AGATCAATCGTCGGCCTAAAG 57.901 47.619 0.00 0.00 0.00 1.85
443 444 2.431057 AGATCAATCGTCGGCCTAAAGT 59.569 45.455 0.00 0.00 0.00 2.66
444 445 3.635373 AGATCAATCGTCGGCCTAAAGTA 59.365 43.478 0.00 0.00 0.00 2.24
445 446 3.431922 TCAATCGTCGGCCTAAAGTAG 57.568 47.619 0.00 0.00 0.00 2.57
446 447 3.018856 TCAATCGTCGGCCTAAAGTAGA 58.981 45.455 0.00 0.00 0.00 2.59
447 448 3.114065 CAATCGTCGGCCTAAAGTAGAC 58.886 50.000 0.00 0.00 0.00 2.59
448 449 2.119801 TCGTCGGCCTAAAGTAGACT 57.880 50.000 0.00 0.00 0.00 3.24
449 450 1.741706 TCGTCGGCCTAAAGTAGACTG 59.258 52.381 0.00 0.00 0.00 3.51
450 451 1.202268 CGTCGGCCTAAAGTAGACTGG 60.202 57.143 0.00 0.00 0.00 4.00
451 452 2.097825 GTCGGCCTAAAGTAGACTGGA 58.902 52.381 0.00 0.00 0.00 3.86
452 453 2.494870 GTCGGCCTAAAGTAGACTGGAA 59.505 50.000 0.00 0.00 0.00 3.53
453 454 3.056322 GTCGGCCTAAAGTAGACTGGAAA 60.056 47.826 0.00 0.00 0.00 3.13
454 455 3.194968 TCGGCCTAAAGTAGACTGGAAAG 59.805 47.826 0.00 0.00 0.00 2.62
455 456 3.056035 CGGCCTAAAGTAGACTGGAAAGT 60.056 47.826 0.00 0.00 0.00 2.66
456 457 4.562963 CGGCCTAAAGTAGACTGGAAAGTT 60.563 45.833 0.00 0.00 0.00 2.66
457 458 4.936411 GGCCTAAAGTAGACTGGAAAGTTC 59.064 45.833 0.00 0.00 0.00 3.01
470 471 3.991367 GGAAAGTTCCTCTTCGACTTCA 58.009 45.455 2.65 0.00 44.11 3.02
471 472 3.991121 GGAAAGTTCCTCTTCGACTTCAG 59.009 47.826 2.65 0.00 44.11 3.02
472 473 2.734276 AGTTCCTCTTCGACTTCAGC 57.266 50.000 0.00 0.00 0.00 4.26
473 474 1.964223 AGTTCCTCTTCGACTTCAGCA 59.036 47.619 0.00 0.00 0.00 4.41
474 475 2.029470 AGTTCCTCTTCGACTTCAGCAG 60.029 50.000 0.00 0.00 0.00 4.24
475 476 0.891373 TCCTCTTCGACTTCAGCAGG 59.109 55.000 0.00 0.00 0.00 4.85
476 477 0.739112 CCTCTTCGACTTCAGCAGGC 60.739 60.000 0.00 0.00 0.00 4.85
477 478 0.739112 CTCTTCGACTTCAGCAGGCC 60.739 60.000 0.00 0.00 0.00 5.19
478 479 2.048222 TTCGACTTCAGCAGGCCG 60.048 61.111 0.00 0.00 0.00 6.13
479 480 2.492449 CTTCGACTTCAGCAGGCCGA 62.492 60.000 0.00 0.00 32.15 5.54
480 481 2.765250 TTCGACTTCAGCAGGCCGAC 62.765 60.000 0.00 0.00 33.27 4.79
481 482 2.343758 GACTTCAGCAGGCCGACA 59.656 61.111 0.00 0.00 0.00 4.35
482 483 1.739562 GACTTCAGCAGGCCGACAG 60.740 63.158 0.00 0.00 0.00 3.51
483 484 2.435586 CTTCAGCAGGCCGACAGG 60.436 66.667 0.00 0.00 41.62 4.00
484 485 3.241530 TTCAGCAGGCCGACAGGT 61.242 61.111 0.00 0.00 40.50 4.00
485 486 1.888436 CTTCAGCAGGCCGACAGGTA 61.888 60.000 0.00 0.00 40.50 3.08
486 487 1.476845 TTCAGCAGGCCGACAGGTAA 61.477 55.000 0.00 0.00 40.50 2.85
487 488 1.221840 CAGCAGGCCGACAGGTAAT 59.778 57.895 0.00 0.00 40.50 1.89
488 489 0.464036 CAGCAGGCCGACAGGTAATA 59.536 55.000 0.00 0.00 40.50 0.98
489 490 0.753262 AGCAGGCCGACAGGTAATAG 59.247 55.000 0.00 0.00 40.50 1.73
490 491 0.464452 GCAGGCCGACAGGTAATAGT 59.536 55.000 0.00 0.00 40.50 2.12
491 492 1.684983 GCAGGCCGACAGGTAATAGTA 59.315 52.381 0.00 0.00 40.50 1.82
492 493 2.299297 GCAGGCCGACAGGTAATAGTAT 59.701 50.000 0.00 0.00 40.50 2.12
493 494 3.244112 GCAGGCCGACAGGTAATAGTATT 60.244 47.826 0.00 0.17 40.50 1.89
494 495 4.307432 CAGGCCGACAGGTAATAGTATTG 58.693 47.826 5.61 0.00 40.50 1.90
495 496 3.323979 AGGCCGACAGGTAATAGTATTGG 59.676 47.826 5.61 0.00 40.50 3.16
496 497 3.322828 GGCCGACAGGTAATAGTATTGGA 59.677 47.826 5.61 0.00 40.50 3.53
497 498 4.020485 GGCCGACAGGTAATAGTATTGGAT 60.020 45.833 5.61 0.00 40.50 3.41
498 499 5.512576 GGCCGACAGGTAATAGTATTGGATT 60.513 44.000 5.61 0.00 40.50 3.01
499 500 5.995897 GCCGACAGGTAATAGTATTGGATTT 59.004 40.000 5.61 0.00 40.50 2.17
500 501 6.485648 GCCGACAGGTAATAGTATTGGATTTT 59.514 38.462 5.61 0.00 40.50 1.82
501 502 7.012989 GCCGACAGGTAATAGTATTGGATTTTT 59.987 37.037 5.61 0.00 40.50 1.94
601 602 6.775629 AGATATTCTAGCTTCTCGGACTCTTT 59.224 38.462 0.00 0.00 0.00 2.52
924 940 2.514592 CTCGCATCCCACCGCAAT 60.515 61.111 0.00 0.00 0.00 3.56
937 953 1.024579 CCGCAATACACCACTCACCC 61.025 60.000 0.00 0.00 0.00 4.61
959 975 1.875813 CACGCTCTCGCTCATCACC 60.876 63.158 0.00 0.00 39.84 4.02
993 1009 2.334977 ACTCCACCACCACAGTATCAA 58.665 47.619 0.00 0.00 0.00 2.57
1044 1060 4.083862 GGCTCCGAGACCACCACC 62.084 72.222 0.00 0.00 0.00 4.61
1492 1522 3.847602 CCTCTGCCTCCGCCTCTG 61.848 72.222 0.00 0.00 0.00 3.35
1493 1523 4.527583 CTCTGCCTCCGCCTCTGC 62.528 72.222 0.00 0.00 0.00 4.26
1596 1638 3.710722 CCTCCGTCCTGCCAGCTT 61.711 66.667 0.00 0.00 0.00 3.74
1696 1738 2.093447 CAGTGGGAGTACTAAAGCCAGG 60.093 54.545 0.00 0.00 0.00 4.45
1721 1763 4.357947 TCGCTCAGTCACCGGTGC 62.358 66.667 30.25 23.26 0.00 5.01
1766 1818 1.396996 GCATGTATGGCTCGTTCGTTT 59.603 47.619 0.00 0.00 0.00 3.60
1914 1966 2.845967 CGTATTTGCTTTGCGTGGATTC 59.154 45.455 0.00 0.00 0.00 2.52
1949 2006 7.872163 ATATGTTTGTGTGTGCAATTAACAG 57.128 32.000 0.00 0.00 30.53 3.16
1964 2021 6.321717 CAATTAACAGCGCATCTCCTTTTTA 58.678 36.000 11.47 0.00 0.00 1.52
1971 2028 4.336713 AGCGCATCTCCTTTTTATTCCTTC 59.663 41.667 11.47 0.00 0.00 3.46
2096 2171 1.191489 TTCACTCCACTGATCCGGCA 61.191 55.000 0.00 0.00 0.00 5.69
2132 2207 3.688272 CAATCATGCATTCAACCTCGAC 58.312 45.455 0.00 0.00 0.00 4.20
2142 2217 2.759355 TCAACCTCGACCCCATATTCT 58.241 47.619 0.00 0.00 0.00 2.40
2189 2264 7.379059 TCTCTTTTTATATGATGAGGCTGGA 57.621 36.000 0.00 0.00 0.00 3.86
2200 2275 6.252599 TGATGAGGCTGGAGTTACATATTT 57.747 37.500 0.00 0.00 0.00 1.40
2226 2301 6.743575 ATTCGTCCTTGGAAATTACTTGAG 57.256 37.500 0.00 0.00 0.00 3.02
2268 2343 4.373156 ACAAATTAGAGCTGGAACCAGT 57.627 40.909 19.97 8.72 45.24 4.00
2269 2344 4.729868 ACAAATTAGAGCTGGAACCAGTT 58.270 39.130 19.97 15.28 45.24 3.16
2270 2345 4.520492 ACAAATTAGAGCTGGAACCAGTTG 59.480 41.667 19.97 16.03 45.24 3.16
2271 2346 4.640771 AATTAGAGCTGGAACCAGTTGA 57.359 40.909 19.97 4.22 45.24 3.18
2272 2347 4.640771 ATTAGAGCTGGAACCAGTTGAA 57.359 40.909 19.97 11.74 45.24 2.69
2273 2348 4.431416 TTAGAGCTGGAACCAGTTGAAA 57.569 40.909 19.97 9.19 45.24 2.69
2274 2349 3.297134 AGAGCTGGAACCAGTTGAAAA 57.703 42.857 19.97 0.00 45.24 2.29
2275 2350 3.837355 AGAGCTGGAACCAGTTGAAAAT 58.163 40.909 19.97 1.12 45.24 1.82
2276 2351 4.985538 AGAGCTGGAACCAGTTGAAAATA 58.014 39.130 19.97 0.00 45.24 1.40
2277 2352 5.385198 AGAGCTGGAACCAGTTGAAAATAA 58.615 37.500 19.97 0.00 45.24 1.40
2278 2353 5.833131 AGAGCTGGAACCAGTTGAAAATAAA 59.167 36.000 19.97 0.00 45.24 1.40
2279 2354 6.494835 AGAGCTGGAACCAGTTGAAAATAAAT 59.505 34.615 19.97 0.00 45.24 1.40
2280 2355 7.015584 AGAGCTGGAACCAGTTGAAAATAAATT 59.984 33.333 19.97 0.00 45.24 1.82
2281 2356 7.508687 AGCTGGAACCAGTTGAAAATAAATTT 58.491 30.769 19.97 0.00 45.24 1.82
2282 2357 8.646900 AGCTGGAACCAGTTGAAAATAAATTTA 58.353 29.630 19.97 0.00 45.24 1.40
2283 2358 9.435688 GCTGGAACCAGTTGAAAATAAATTTAT 57.564 29.630 19.97 4.81 45.24 1.40
2338 2418 1.262683 GCTCGCGAATAGGTACGTACT 59.737 52.381 24.07 13.10 0.00 2.73
2339 2419 2.286654 GCTCGCGAATAGGTACGTACTT 60.287 50.000 24.07 19.70 0.00 2.24
2340 2420 3.059597 GCTCGCGAATAGGTACGTACTTA 60.060 47.826 24.07 21.22 0.00 2.24
2341 2421 4.449779 CTCGCGAATAGGTACGTACTTAC 58.550 47.826 24.07 9.96 0.00 2.34
2380 2460 2.123077 CAGGAGGGGGAGAGCGAT 60.123 66.667 0.00 0.00 0.00 4.58
2421 2502 1.657556 GCGGGCTGCTTGTTGTAAA 59.342 52.632 11.99 0.00 41.73 2.01
2422 2503 0.663269 GCGGGCTGCTTGTTGTAAAC 60.663 55.000 11.99 0.00 44.25 2.01
2423 2504 3.921475 GCGGGCTGCTTGTTGTAAACC 62.921 57.143 11.99 0.00 43.66 3.27
2620 2710 1.151810 GCATGGGAGGGGAGGGATA 60.152 63.158 0.00 0.00 0.00 2.59
2672 2767 0.320508 TGGCGCCATGTTTACGTACA 60.321 50.000 29.03 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.194640 TGTCATCTGCATCTTTCCTTAGC 58.805 43.478 0.00 0.00 0.00 3.09
1 2 5.645067 TGTTGTCATCTGCATCTTTCCTTAG 59.355 40.000 0.00 0.00 0.00 2.18
3 4 4.401022 TGTTGTCATCTGCATCTTTCCTT 58.599 39.130 0.00 0.00 0.00 3.36
4 5 4.025040 TGTTGTCATCTGCATCTTTCCT 57.975 40.909 0.00 0.00 0.00 3.36
5 6 4.730657 CTTGTTGTCATCTGCATCTTTCC 58.269 43.478 0.00 0.00 0.00 3.13
6 7 4.164294 GCTTGTTGTCATCTGCATCTTTC 58.836 43.478 0.00 0.00 0.00 2.62
7 8 3.365666 CGCTTGTTGTCATCTGCATCTTT 60.366 43.478 0.00 0.00 0.00 2.52
8 9 2.161012 CGCTTGTTGTCATCTGCATCTT 59.839 45.455 0.00 0.00 0.00 2.40
9 10 1.736126 CGCTTGTTGTCATCTGCATCT 59.264 47.619 0.00 0.00 0.00 2.90
10 11 1.733912 TCGCTTGTTGTCATCTGCATC 59.266 47.619 0.00 0.00 0.00 3.91
11 12 1.736126 CTCGCTTGTTGTCATCTGCAT 59.264 47.619 0.00 0.00 0.00 3.96
12 13 1.150827 CTCGCTTGTTGTCATCTGCA 58.849 50.000 0.00 0.00 0.00 4.41
13 14 0.179205 GCTCGCTTGTTGTCATCTGC 60.179 55.000 0.00 0.00 0.00 4.26
14 15 0.094216 CGCTCGCTTGTTGTCATCTG 59.906 55.000 0.00 0.00 0.00 2.90
15 16 1.016130 CCGCTCGCTTGTTGTCATCT 61.016 55.000 0.00 0.00 0.00 2.90
16 17 1.421485 CCGCTCGCTTGTTGTCATC 59.579 57.895 0.00 0.00 0.00 2.92
17 18 2.034879 CCCGCTCGCTTGTTGTCAT 61.035 57.895 0.00 0.00 0.00 3.06
18 19 2.664851 CCCGCTCGCTTGTTGTCA 60.665 61.111 0.00 0.00 0.00 3.58
19 20 2.665185 ACCCGCTCGCTTGTTGTC 60.665 61.111 0.00 0.00 0.00 3.18
20 21 2.972505 CACCCGCTCGCTTGTTGT 60.973 61.111 0.00 0.00 0.00 3.32
21 22 3.726517 CCACCCGCTCGCTTGTTG 61.727 66.667 0.00 0.00 0.00 3.33
22 23 3.767630 AACCACCCGCTCGCTTGTT 62.768 57.895 0.00 0.00 0.00 2.83
23 24 3.767630 AAACCACCCGCTCGCTTGT 62.768 57.895 0.00 0.00 0.00 3.16
24 25 1.231958 TAAAACCACCCGCTCGCTTG 61.232 55.000 0.00 0.00 0.00 4.01
25 26 0.322187 ATAAAACCACCCGCTCGCTT 60.322 50.000 0.00 0.00 0.00 4.68
26 27 0.538118 TATAAAACCACCCGCTCGCT 59.462 50.000 0.00 0.00 0.00 4.93
27 28 0.935196 CTATAAAACCACCCGCTCGC 59.065 55.000 0.00 0.00 0.00 5.03
28 29 2.589798 TCTATAAAACCACCCGCTCG 57.410 50.000 0.00 0.00 0.00 5.03
29 30 4.448210 TCATTCTATAAAACCACCCGCTC 58.552 43.478 0.00 0.00 0.00 5.03
30 31 4.451900 CTCATTCTATAAAACCACCCGCT 58.548 43.478 0.00 0.00 0.00 5.52
31 32 3.564225 CCTCATTCTATAAAACCACCCGC 59.436 47.826 0.00 0.00 0.00 6.13
32 33 4.134563 CCCTCATTCTATAAAACCACCCG 58.865 47.826 0.00 0.00 0.00 5.28
33 34 5.125367 ACCCTCATTCTATAAAACCACCC 57.875 43.478 0.00 0.00 0.00 4.61
34 35 6.771267 CCTTACCCTCATTCTATAAAACCACC 59.229 42.308 0.00 0.00 0.00 4.61
35 36 6.771267 CCCTTACCCTCATTCTATAAAACCAC 59.229 42.308 0.00 0.00 0.00 4.16
36 37 6.126303 CCCCTTACCCTCATTCTATAAAACCA 60.126 42.308 0.00 0.00 0.00 3.67
37 38 6.126273 ACCCCTTACCCTCATTCTATAAAACC 60.126 42.308 0.00 0.00 0.00 3.27
38 39 6.907961 ACCCCTTACCCTCATTCTATAAAAC 58.092 40.000 0.00 0.00 0.00 2.43
39 40 7.533923 AACCCCTTACCCTCATTCTATAAAA 57.466 36.000 0.00 0.00 0.00 1.52
40 41 6.183361 CGAACCCCTTACCCTCATTCTATAAA 60.183 42.308 0.00 0.00 0.00 1.40
41 42 5.306160 CGAACCCCTTACCCTCATTCTATAA 59.694 44.000 0.00 0.00 0.00 0.98
42 43 4.836736 CGAACCCCTTACCCTCATTCTATA 59.163 45.833 0.00 0.00 0.00 1.31
43 44 3.646637 CGAACCCCTTACCCTCATTCTAT 59.353 47.826 0.00 0.00 0.00 1.98
44 45 3.036091 CGAACCCCTTACCCTCATTCTA 58.964 50.000 0.00 0.00 0.00 2.10
45 46 1.838077 CGAACCCCTTACCCTCATTCT 59.162 52.381 0.00 0.00 0.00 2.40
46 47 1.746171 GCGAACCCCTTACCCTCATTC 60.746 57.143 0.00 0.00 0.00 2.67
47 48 0.255033 GCGAACCCCTTACCCTCATT 59.745 55.000 0.00 0.00 0.00 2.57
48 49 1.912971 GCGAACCCCTTACCCTCAT 59.087 57.895 0.00 0.00 0.00 2.90
49 50 2.652095 CGCGAACCCCTTACCCTCA 61.652 63.158 0.00 0.00 0.00 3.86
50 51 2.186125 CGCGAACCCCTTACCCTC 59.814 66.667 0.00 0.00 0.00 4.30
51 52 2.284112 TCGCGAACCCCTTACCCT 60.284 61.111 6.20 0.00 0.00 4.34
52 53 1.891722 TTCTCGCGAACCCCTTACCC 61.892 60.000 11.33 0.00 0.00 3.69
53 54 0.037046 TTTCTCGCGAACCCCTTACC 60.037 55.000 11.33 0.00 0.00 2.85
54 55 1.799544 TTTTCTCGCGAACCCCTTAC 58.200 50.000 11.33 0.00 0.00 2.34
55 56 2.745281 CAATTTTCTCGCGAACCCCTTA 59.255 45.455 11.33 0.00 0.00 2.69
56 57 1.539827 CAATTTTCTCGCGAACCCCTT 59.460 47.619 11.33 0.00 0.00 3.95
57 58 1.165270 CAATTTTCTCGCGAACCCCT 58.835 50.000 11.33 0.00 0.00 4.79
58 59 0.170339 CCAATTTTCTCGCGAACCCC 59.830 55.000 11.33 0.00 0.00 4.95
59 60 1.135774 GTCCAATTTTCTCGCGAACCC 60.136 52.381 11.33 0.00 0.00 4.11
60 61 1.463528 CGTCCAATTTTCTCGCGAACC 60.464 52.381 11.33 0.00 0.00 3.62
61 62 1.463528 CCGTCCAATTTTCTCGCGAAC 60.464 52.381 11.33 0.31 0.00 3.95
62 63 0.793861 CCGTCCAATTTTCTCGCGAA 59.206 50.000 11.33 0.00 0.00 4.70
63 64 1.017177 CCCGTCCAATTTTCTCGCGA 61.017 55.000 9.26 9.26 0.00 5.87
64 65 1.017177 TCCCGTCCAATTTTCTCGCG 61.017 55.000 0.00 0.00 0.00 5.87
65 66 1.161843 TTCCCGTCCAATTTTCTCGC 58.838 50.000 0.00 0.00 0.00 5.03
66 67 3.071479 TCTTTCCCGTCCAATTTTCTCG 58.929 45.455 0.00 0.00 0.00 4.04
67 68 5.447624 TTTCTTTCCCGTCCAATTTTCTC 57.552 39.130 0.00 0.00 0.00 2.87
68 69 5.862678 TTTTCTTTCCCGTCCAATTTTCT 57.137 34.783 0.00 0.00 0.00 2.52
69 70 6.145534 GTCATTTTCTTTCCCGTCCAATTTTC 59.854 38.462 0.00 0.00 0.00 2.29
70 71 5.989168 GTCATTTTCTTTCCCGTCCAATTTT 59.011 36.000 0.00 0.00 0.00 1.82
71 72 5.069781 TGTCATTTTCTTTCCCGTCCAATTT 59.930 36.000 0.00 0.00 0.00 1.82
72 73 4.586841 TGTCATTTTCTTTCCCGTCCAATT 59.413 37.500 0.00 0.00 0.00 2.32
73 74 4.148838 TGTCATTTTCTTTCCCGTCCAAT 58.851 39.130 0.00 0.00 0.00 3.16
74 75 3.556999 TGTCATTTTCTTTCCCGTCCAA 58.443 40.909 0.00 0.00 0.00 3.53
75 76 3.146066 CTGTCATTTTCTTTCCCGTCCA 58.854 45.455 0.00 0.00 0.00 4.02
76 77 2.488153 CCTGTCATTTTCTTTCCCGTCC 59.512 50.000 0.00 0.00 0.00 4.79
77 78 3.408634 TCCTGTCATTTTCTTTCCCGTC 58.591 45.455 0.00 0.00 0.00 4.79
78 79 3.502123 TCCTGTCATTTTCTTTCCCGT 57.498 42.857 0.00 0.00 0.00 5.28
79 80 3.191371 CCTTCCTGTCATTTTCTTTCCCG 59.809 47.826 0.00 0.00 0.00 5.14
80 81 4.407365 TCCTTCCTGTCATTTTCTTTCCC 58.593 43.478 0.00 0.00 0.00 3.97
81 82 5.770162 TCTTCCTTCCTGTCATTTTCTTTCC 59.230 40.000 0.00 0.00 0.00 3.13
82 83 6.884280 TCTTCCTTCCTGTCATTTTCTTTC 57.116 37.500 0.00 0.00 0.00 2.62
83 84 7.006509 TCATCTTCCTTCCTGTCATTTTCTTT 58.993 34.615 0.00 0.00 0.00 2.52
84 85 6.432472 GTCATCTTCCTTCCTGTCATTTTCTT 59.568 38.462 0.00 0.00 0.00 2.52
85 86 5.942826 GTCATCTTCCTTCCTGTCATTTTCT 59.057 40.000 0.00 0.00 0.00 2.52
86 87 5.163814 CGTCATCTTCCTTCCTGTCATTTTC 60.164 44.000 0.00 0.00 0.00 2.29
87 88 4.697352 CGTCATCTTCCTTCCTGTCATTTT 59.303 41.667 0.00 0.00 0.00 1.82
88 89 4.020218 TCGTCATCTTCCTTCCTGTCATTT 60.020 41.667 0.00 0.00 0.00 2.32
89 90 3.515502 TCGTCATCTTCCTTCCTGTCATT 59.484 43.478 0.00 0.00 0.00 2.57
90 91 3.099905 TCGTCATCTTCCTTCCTGTCAT 58.900 45.455 0.00 0.00 0.00 3.06
91 92 2.493675 CTCGTCATCTTCCTTCCTGTCA 59.506 50.000 0.00 0.00 0.00 3.58
92 93 2.755655 TCTCGTCATCTTCCTTCCTGTC 59.244 50.000 0.00 0.00 0.00 3.51
93 94 2.808919 TCTCGTCATCTTCCTTCCTGT 58.191 47.619 0.00 0.00 0.00 4.00
94 95 3.876274 TTCTCGTCATCTTCCTTCCTG 57.124 47.619 0.00 0.00 0.00 3.86
95 96 3.578716 TGTTTCTCGTCATCTTCCTTCCT 59.421 43.478 0.00 0.00 0.00 3.36
96 97 3.926616 TGTTTCTCGTCATCTTCCTTCC 58.073 45.455 0.00 0.00 0.00 3.46
97 98 5.230942 TCTTGTTTCTCGTCATCTTCCTTC 58.769 41.667 0.00 0.00 0.00 3.46
98 99 5.215252 TCTTGTTTCTCGTCATCTTCCTT 57.785 39.130 0.00 0.00 0.00 3.36
99 100 4.873746 TCTTGTTTCTCGTCATCTTCCT 57.126 40.909 0.00 0.00 0.00 3.36
100 101 4.932200 ACATCTTGTTTCTCGTCATCTTCC 59.068 41.667 0.00 0.00 0.00 3.46
101 102 5.220117 CGACATCTTGTTTCTCGTCATCTTC 60.220 44.000 0.00 0.00 0.00 2.87
102 103 4.623167 CGACATCTTGTTTCTCGTCATCTT 59.377 41.667 0.00 0.00 0.00 2.40
103 104 4.169508 CGACATCTTGTTTCTCGTCATCT 58.830 43.478 0.00 0.00 0.00 2.90
104 105 3.304559 CCGACATCTTGTTTCTCGTCATC 59.695 47.826 0.00 0.00 0.00 2.92
105 106 3.254060 CCGACATCTTGTTTCTCGTCAT 58.746 45.455 0.00 0.00 0.00 3.06
106 107 2.609491 CCCGACATCTTGTTTCTCGTCA 60.609 50.000 0.00 0.00 0.00 4.35
107 108 1.993370 CCCGACATCTTGTTTCTCGTC 59.007 52.381 0.00 0.00 0.00 4.20
108 109 1.616865 TCCCGACATCTTGTTTCTCGT 59.383 47.619 0.00 0.00 0.00 4.18
109 110 2.363788 TCCCGACATCTTGTTTCTCG 57.636 50.000 0.00 0.00 0.00 4.04
110 111 4.315803 TCTTTCCCGACATCTTGTTTCTC 58.684 43.478 0.00 0.00 0.00 2.87
111 112 4.351874 TCTTTCCCGACATCTTGTTTCT 57.648 40.909 0.00 0.00 0.00 2.52
112 113 5.432885 TTTCTTTCCCGACATCTTGTTTC 57.567 39.130 0.00 0.00 0.00 2.78
113 114 6.215845 CAATTTCTTTCCCGACATCTTGTTT 58.784 36.000 0.00 0.00 0.00 2.83
114 115 5.278957 CCAATTTCTTTCCCGACATCTTGTT 60.279 40.000 0.00 0.00 0.00 2.83
115 116 4.218417 CCAATTTCTTTCCCGACATCTTGT 59.782 41.667 0.00 0.00 0.00 3.16
116 117 4.737054 CCAATTTCTTTCCCGACATCTTG 58.263 43.478 0.00 0.00 0.00 3.02
117 118 3.193479 GCCAATTTCTTTCCCGACATCTT 59.807 43.478 0.00 0.00 0.00 2.40
118 119 2.755103 GCCAATTTCTTTCCCGACATCT 59.245 45.455 0.00 0.00 0.00 2.90
119 120 2.477863 CGCCAATTTCTTTCCCGACATC 60.478 50.000 0.00 0.00 0.00 3.06
120 121 1.472480 CGCCAATTTCTTTCCCGACAT 59.528 47.619 0.00 0.00 0.00 3.06
121 122 0.878416 CGCCAATTTCTTTCCCGACA 59.122 50.000 0.00 0.00 0.00 4.35
122 123 0.170339 CCGCCAATTTCTTTCCCGAC 59.830 55.000 0.00 0.00 0.00 4.79
123 124 0.963355 CCCGCCAATTTCTTTCCCGA 60.963 55.000 0.00 0.00 0.00 5.14
124 125 0.963355 TCCCGCCAATTTCTTTCCCG 60.963 55.000 0.00 0.00 0.00 5.14
125 126 1.262417 TTCCCGCCAATTTCTTTCCC 58.738 50.000 0.00 0.00 0.00 3.97
126 127 4.729227 TTATTCCCGCCAATTTCTTTCC 57.271 40.909 0.00 0.00 0.00 3.13
127 128 5.523552 CCATTTATTCCCGCCAATTTCTTTC 59.476 40.000 0.00 0.00 0.00 2.62
128 129 5.188751 TCCATTTATTCCCGCCAATTTCTTT 59.811 36.000 0.00 0.00 0.00 2.52
129 130 4.714308 TCCATTTATTCCCGCCAATTTCTT 59.286 37.500 0.00 0.00 0.00 2.52
130 131 4.285863 TCCATTTATTCCCGCCAATTTCT 58.714 39.130 0.00 0.00 0.00 2.52
131 132 4.664150 TCCATTTATTCCCGCCAATTTC 57.336 40.909 0.00 0.00 0.00 2.17
132 133 4.141733 CCTTCCATTTATTCCCGCCAATTT 60.142 41.667 0.00 0.00 0.00 1.82
133 134 3.387699 CCTTCCATTTATTCCCGCCAATT 59.612 43.478 0.00 0.00 0.00 2.32
134 135 2.965147 CCTTCCATTTATTCCCGCCAAT 59.035 45.455 0.00 0.00 0.00 3.16
135 136 2.024846 TCCTTCCATTTATTCCCGCCAA 60.025 45.455 0.00 0.00 0.00 4.52
136 137 1.566703 TCCTTCCATTTATTCCCGCCA 59.433 47.619 0.00 0.00 0.00 5.69
137 138 2.358322 TCCTTCCATTTATTCCCGCC 57.642 50.000 0.00 0.00 0.00 6.13
138 139 3.068165 CCTTTCCTTCCATTTATTCCCGC 59.932 47.826 0.00 0.00 0.00 6.13
139 140 3.636764 CCCTTTCCTTCCATTTATTCCCG 59.363 47.826 0.00 0.00 0.00 5.14
140 141 4.620723 ACCCTTTCCTTCCATTTATTCCC 58.379 43.478 0.00 0.00 0.00 3.97
141 142 5.719563 TCAACCCTTTCCTTCCATTTATTCC 59.280 40.000 0.00 0.00 0.00 3.01
142 143 6.625081 CGTCAACCCTTTCCTTCCATTTATTC 60.625 42.308 0.00 0.00 0.00 1.75
143 144 5.185056 CGTCAACCCTTTCCTTCCATTTATT 59.815 40.000 0.00 0.00 0.00 1.40
144 145 4.705023 CGTCAACCCTTTCCTTCCATTTAT 59.295 41.667 0.00 0.00 0.00 1.40
145 146 4.076394 CGTCAACCCTTTCCTTCCATTTA 58.924 43.478 0.00 0.00 0.00 1.40
146 147 2.890945 CGTCAACCCTTTCCTTCCATTT 59.109 45.455 0.00 0.00 0.00 2.32
147 148 2.514803 CGTCAACCCTTTCCTTCCATT 58.485 47.619 0.00 0.00 0.00 3.16
148 149 1.271926 CCGTCAACCCTTTCCTTCCAT 60.272 52.381 0.00 0.00 0.00 3.41
149 150 0.109723 CCGTCAACCCTTTCCTTCCA 59.890 55.000 0.00 0.00 0.00 3.53
150 151 0.608308 CCCGTCAACCCTTTCCTTCC 60.608 60.000 0.00 0.00 0.00 3.46
151 152 0.399075 TCCCGTCAACCCTTTCCTTC 59.601 55.000 0.00 0.00 0.00 3.46
152 153 0.848053 TTCCCGTCAACCCTTTCCTT 59.152 50.000 0.00 0.00 0.00 3.36
153 154 0.848053 TTTCCCGTCAACCCTTTCCT 59.152 50.000 0.00 0.00 0.00 3.36
154 155 1.694844 TTTTCCCGTCAACCCTTTCC 58.305 50.000 0.00 0.00 0.00 3.13
180 181 1.931172 CTTAACCATGTAGCGTTCCCG 59.069 52.381 0.00 0.00 37.07 5.14
181 182 2.285977 CCTTAACCATGTAGCGTTCCC 58.714 52.381 0.00 0.00 0.00 3.97
182 183 2.676342 CACCTTAACCATGTAGCGTTCC 59.324 50.000 0.00 0.00 0.00 3.62
183 184 2.676342 CCACCTTAACCATGTAGCGTTC 59.324 50.000 0.00 0.00 0.00 3.95
184 185 2.617021 CCCACCTTAACCATGTAGCGTT 60.617 50.000 0.00 0.00 0.00 4.84
185 186 1.065709 CCCACCTTAACCATGTAGCGT 60.066 52.381 0.00 0.00 0.00 5.07
186 187 1.663695 CCCACCTTAACCATGTAGCG 58.336 55.000 0.00 0.00 0.00 4.26
187 188 1.562475 TCCCCACCTTAACCATGTAGC 59.438 52.381 0.00 0.00 0.00 3.58
188 189 4.014406 GTTTCCCCACCTTAACCATGTAG 58.986 47.826 0.00 0.00 0.00 2.74
189 190 3.245336 GGTTTCCCCACCTTAACCATGTA 60.245 47.826 0.00 0.00 39.80 2.29
190 191 2.492010 GGTTTCCCCACCTTAACCATGT 60.492 50.000 0.00 0.00 39.80 3.21
191 192 2.176045 GGTTTCCCCACCTTAACCATG 58.824 52.381 0.00 0.00 39.80 3.66
192 193 1.790157 TGGTTTCCCCACCTTAACCAT 59.210 47.619 0.00 0.00 43.65 3.55
193 194 1.232909 TGGTTTCCCCACCTTAACCA 58.767 50.000 0.00 0.00 45.64 3.67
203 204 1.276989 TGTCGAGTACATGGTTTCCCC 59.723 52.381 0.00 0.00 31.43 4.81
204 205 2.754946 TGTCGAGTACATGGTTTCCC 57.245 50.000 0.00 0.00 31.43 3.97
205 206 3.921677 TCTTGTCGAGTACATGGTTTCC 58.078 45.455 0.00 0.00 38.10 3.13
206 207 7.412672 GGTTTATCTTGTCGAGTACATGGTTTC 60.413 40.741 0.00 0.00 38.10 2.78
207 208 6.370718 GGTTTATCTTGTCGAGTACATGGTTT 59.629 38.462 0.00 0.00 38.10 3.27
208 209 5.873164 GGTTTATCTTGTCGAGTACATGGTT 59.127 40.000 0.00 0.00 38.10 3.67
209 210 5.046878 TGGTTTATCTTGTCGAGTACATGGT 60.047 40.000 0.00 0.00 38.10 3.55
210 211 5.416083 TGGTTTATCTTGTCGAGTACATGG 58.584 41.667 0.00 0.00 38.10 3.66
211 212 6.100004 ACTGGTTTATCTTGTCGAGTACATG 58.900 40.000 0.00 0.00 38.10 3.21
212 213 6.282199 ACTGGTTTATCTTGTCGAGTACAT 57.718 37.500 0.00 0.00 38.10 2.29
213 214 5.717078 ACTGGTTTATCTTGTCGAGTACA 57.283 39.130 0.00 0.00 35.88 2.90
214 215 5.924825 ACAACTGGTTTATCTTGTCGAGTAC 59.075 40.000 0.00 0.00 0.00 2.73
215 216 6.092955 ACAACTGGTTTATCTTGTCGAGTA 57.907 37.500 0.00 0.00 0.00 2.59
216 217 4.957296 ACAACTGGTTTATCTTGTCGAGT 58.043 39.130 0.00 0.00 0.00 4.18
217 218 5.517037 GACAACTGGTTTATCTTGTCGAG 57.483 43.478 0.00 0.00 34.78 4.04
220 221 5.917541 TTCGACAACTGGTTTATCTTGTC 57.082 39.130 0.00 0.00 39.33 3.18
221 222 6.687081 TTTTCGACAACTGGTTTATCTTGT 57.313 33.333 0.00 0.00 0.00 3.16
222 223 6.636850 CCTTTTTCGACAACTGGTTTATCTTG 59.363 38.462 0.00 0.00 0.00 3.02
223 224 6.544564 TCCTTTTTCGACAACTGGTTTATCTT 59.455 34.615 0.00 0.00 0.00 2.40
224 225 6.017357 GTCCTTTTTCGACAACTGGTTTATCT 60.017 38.462 0.00 0.00 0.00 1.98
225 226 6.017357 AGTCCTTTTTCGACAACTGGTTTATC 60.017 38.462 0.00 0.00 32.41 1.75
226 227 5.826208 AGTCCTTTTTCGACAACTGGTTTAT 59.174 36.000 0.00 0.00 32.41 1.40
227 228 5.187687 AGTCCTTTTTCGACAACTGGTTTA 58.812 37.500 0.00 0.00 32.41 2.01
228 229 4.014406 AGTCCTTTTTCGACAACTGGTTT 58.986 39.130 0.00 0.00 32.41 3.27
229 230 3.617284 AGTCCTTTTTCGACAACTGGTT 58.383 40.909 0.00 0.00 32.41 3.67
230 231 3.118371 AGAGTCCTTTTTCGACAACTGGT 60.118 43.478 0.00 0.00 32.41 4.00
231 232 3.467803 AGAGTCCTTTTTCGACAACTGG 58.532 45.455 0.00 0.00 32.41 4.00
232 233 4.318121 CGAAGAGTCCTTTTTCGACAACTG 60.318 45.833 6.43 0.00 44.64 3.16
233 234 3.802685 CGAAGAGTCCTTTTTCGACAACT 59.197 43.478 6.43 0.00 44.64 3.16
234 235 3.800506 TCGAAGAGTCCTTTTTCGACAAC 59.199 43.478 10.01 0.00 45.22 3.32
235 236 4.049546 TCGAAGAGTCCTTTTTCGACAA 57.950 40.909 10.01 0.00 45.22 3.18
236 237 3.720949 TCGAAGAGTCCTTTTTCGACA 57.279 42.857 10.01 0.00 45.22 4.35
239 240 2.731976 CAGGTCGAAGAGTCCTTTTTCG 59.268 50.000 6.03 6.03 43.58 3.46
240 241 3.067833 CCAGGTCGAAGAGTCCTTTTTC 58.932 50.000 0.00 0.00 36.22 2.29
241 242 2.438392 ACCAGGTCGAAGAGTCCTTTTT 59.562 45.455 0.00 0.00 36.22 1.94
242 243 2.047830 ACCAGGTCGAAGAGTCCTTTT 58.952 47.619 0.00 0.00 36.22 2.27
243 244 1.718280 ACCAGGTCGAAGAGTCCTTT 58.282 50.000 0.00 0.00 36.22 3.11
244 245 2.599408 TACCAGGTCGAAGAGTCCTT 57.401 50.000 0.00 0.00 36.22 3.36
245 246 2.599408 TTACCAGGTCGAAGAGTCCT 57.401 50.000 0.00 0.00 38.97 3.85
246 247 3.672767 TTTTACCAGGTCGAAGAGTCC 57.327 47.619 0.00 0.00 36.95 3.85
247 248 3.744942 GGTTTTTACCAGGTCGAAGAGTC 59.255 47.826 0.00 0.00 36.95 3.36
248 249 3.135167 TGGTTTTTACCAGGTCGAAGAGT 59.865 43.478 0.00 0.00 33.00 3.24
249 250 3.497262 GTGGTTTTTACCAGGTCGAAGAG 59.503 47.826 0.00 0.00 41.00 2.85
250 251 3.118334 TGTGGTTTTTACCAGGTCGAAGA 60.118 43.478 0.00 0.00 41.00 2.87
251 252 3.207778 TGTGGTTTTTACCAGGTCGAAG 58.792 45.455 0.00 0.00 41.00 3.79
252 253 3.118334 TCTGTGGTTTTTACCAGGTCGAA 60.118 43.478 0.00 0.00 41.00 3.71
253 254 2.435069 TCTGTGGTTTTTACCAGGTCGA 59.565 45.455 0.00 0.00 41.00 4.20
254 255 2.806244 CTCTGTGGTTTTTACCAGGTCG 59.194 50.000 0.00 0.00 41.00 4.79
255 256 3.564225 CACTCTGTGGTTTTTACCAGGTC 59.436 47.826 0.00 0.00 41.00 3.85
256 257 3.551846 CACTCTGTGGTTTTTACCAGGT 58.448 45.455 0.00 0.00 41.00 4.00
269 270 1.174078 TTGCATGGCACCACTCTGTG 61.174 55.000 0.00 0.00 38.71 3.66
270 271 1.151221 TTGCATGGCACCACTCTGT 59.849 52.632 0.00 0.00 38.71 3.41
271 272 0.892358 AGTTGCATGGCACCACTCTG 60.892 55.000 0.00 0.00 38.71 3.35
272 273 0.178981 AAGTTGCATGGCACCACTCT 60.179 50.000 0.00 0.00 38.71 3.24
273 274 0.242017 GAAGTTGCATGGCACCACTC 59.758 55.000 0.00 0.00 38.71 3.51
274 275 1.518056 CGAAGTTGCATGGCACCACT 61.518 55.000 0.00 0.00 38.71 4.00
275 276 1.081242 CGAAGTTGCATGGCACCAC 60.081 57.895 0.00 0.00 38.71 4.16
276 277 2.267351 CCGAAGTTGCATGGCACCA 61.267 57.895 0.00 0.00 38.71 4.17
277 278 2.200170 GACCGAAGTTGCATGGCACC 62.200 60.000 0.00 0.00 38.71 5.01
278 279 1.210155 GACCGAAGTTGCATGGCAC 59.790 57.895 0.00 0.00 38.71 5.01
279 280 0.323302 TAGACCGAAGTTGCATGGCA 59.677 50.000 0.00 0.00 36.47 4.92
280 281 0.727398 GTAGACCGAAGTTGCATGGC 59.273 55.000 0.00 0.00 0.00 4.40
281 282 2.002586 CTGTAGACCGAAGTTGCATGG 58.997 52.381 0.00 0.00 0.00 3.66
282 283 2.688507 ACTGTAGACCGAAGTTGCATG 58.311 47.619 0.00 0.00 0.00 4.06
283 284 3.402628 AACTGTAGACCGAAGTTGCAT 57.597 42.857 0.00 0.00 33.01 3.96
284 285 2.902705 AACTGTAGACCGAAGTTGCA 57.097 45.000 0.00 0.00 33.01 4.08
285 286 3.120782 CGTAAACTGTAGACCGAAGTTGC 59.879 47.826 0.00 0.00 34.46 4.17
286 287 3.120782 GCGTAAACTGTAGACCGAAGTTG 59.879 47.826 0.00 0.00 34.46 3.16
287 288 3.311966 GCGTAAACTGTAGACCGAAGTT 58.688 45.455 0.00 0.00 35.70 2.66
288 289 2.666619 CGCGTAAACTGTAGACCGAAGT 60.667 50.000 0.00 0.00 0.00 3.01
289 290 1.909532 CGCGTAAACTGTAGACCGAAG 59.090 52.381 0.00 0.00 0.00 3.79
290 291 1.535028 TCGCGTAAACTGTAGACCGAA 59.465 47.619 5.77 0.00 0.00 4.30
291 292 1.155889 TCGCGTAAACTGTAGACCGA 58.844 50.000 5.77 0.00 0.00 4.69
292 293 1.909532 CTTCGCGTAAACTGTAGACCG 59.090 52.381 5.77 0.00 0.00 4.79
293 294 3.169733 CTCTTCGCGTAAACTGTAGACC 58.830 50.000 5.77 0.00 0.00 3.85
294 295 3.819537 ACTCTTCGCGTAAACTGTAGAC 58.180 45.455 5.77 0.00 0.00 2.59
295 296 4.224433 CAACTCTTCGCGTAAACTGTAGA 58.776 43.478 5.77 0.00 0.00 2.59
296 297 3.364023 CCAACTCTTCGCGTAAACTGTAG 59.636 47.826 5.77 0.00 0.00 2.74
297 298 3.311106 CCAACTCTTCGCGTAAACTGTA 58.689 45.455 5.77 0.00 0.00 2.74
298 299 2.132762 CCAACTCTTCGCGTAAACTGT 58.867 47.619 5.77 0.00 0.00 3.55
299 300 1.459592 CCCAACTCTTCGCGTAAACTG 59.540 52.381 5.77 0.00 0.00 3.16
300 301 1.792006 CCCAACTCTTCGCGTAAACT 58.208 50.000 5.77 0.00 0.00 2.66
301 302 0.165295 GCCCAACTCTTCGCGTAAAC 59.835 55.000 5.77 0.00 0.00 2.01
302 303 0.952010 GGCCCAACTCTTCGCGTAAA 60.952 55.000 5.77 0.00 0.00 2.01
303 304 1.375013 GGCCCAACTCTTCGCGTAA 60.375 57.895 5.77 0.00 0.00 3.18
304 305 2.263540 GGCCCAACTCTTCGCGTA 59.736 61.111 5.77 0.00 0.00 4.42
305 306 3.626924 AGGCCCAACTCTTCGCGT 61.627 61.111 5.77 0.00 0.00 6.01
306 307 3.121030 CAGGCCCAACTCTTCGCG 61.121 66.667 0.00 0.00 0.00 5.87
307 308 1.743252 CTCAGGCCCAACTCTTCGC 60.743 63.158 0.00 0.00 0.00 4.70
308 309 0.108424 CTCTCAGGCCCAACTCTTCG 60.108 60.000 0.00 0.00 0.00 3.79
309 310 0.251634 CCTCTCAGGCCCAACTCTTC 59.748 60.000 0.00 0.00 0.00 2.87
310 311 2.381445 CCTCTCAGGCCCAACTCTT 58.619 57.895 0.00 0.00 0.00 2.85
311 312 4.143740 CCTCTCAGGCCCAACTCT 57.856 61.111 0.00 0.00 0.00 3.24
320 321 1.627834 AGTTCAAAGAGGCCTCTCAGG 59.372 52.381 35.18 25.18 42.34 3.86
321 322 3.766591 TCTAGTTCAAAGAGGCCTCTCAG 59.233 47.826 35.18 27.82 42.34 3.35
322 323 3.766591 CTCTAGTTCAAAGAGGCCTCTCA 59.233 47.826 35.18 19.25 42.34 3.27
323 324 3.767131 ACTCTAGTTCAAAGAGGCCTCTC 59.233 47.826 35.18 21.80 43.98 3.20
324 325 3.785364 ACTCTAGTTCAAAGAGGCCTCT 58.215 45.455 30.40 30.40 43.98 3.69
325 326 5.662674 TTACTCTAGTTCAAAGAGGCCTC 57.337 43.478 26.22 26.22 43.98 4.70
326 327 5.544562 AGTTTACTCTAGTTCAAAGAGGCCT 59.455 40.000 3.86 3.86 43.98 5.19
327 328 5.795972 AGTTTACTCTAGTTCAAAGAGGCC 58.204 41.667 0.00 0.00 43.98 5.19
328 329 6.954616 GAGTTTACTCTAGTTCAAAGAGGC 57.045 41.667 2.66 0.00 43.98 4.70
342 343 2.479219 CCGTAGGCCGAAGAGTTTACTC 60.479 54.545 0.00 1.59 46.14 2.59
343 344 1.475682 CCGTAGGCCGAAGAGTTTACT 59.524 52.381 0.00 0.00 46.14 2.24
344 345 1.918595 CCGTAGGCCGAAGAGTTTAC 58.081 55.000 0.00 0.00 46.14 2.01
357 358 4.055214 AGCACTCTTTGGTTTTCCGTAGG 61.055 47.826 0.00 0.00 41.37 3.18
358 359 3.139077 AGCACTCTTTGGTTTTCCGTAG 58.861 45.455 0.00 0.00 44.36 3.51
359 360 3.202829 AGCACTCTTTGGTTTTCCGTA 57.797 42.857 0.00 0.00 44.36 4.02
360 361 2.052782 AGCACTCTTTGGTTTTCCGT 57.947 45.000 0.00 0.00 44.36 4.69
367 368 0.668535 GCCGAAAAGCACTCTTTGGT 59.331 50.000 0.00 0.00 41.40 3.67
368 369 0.039165 GGCCGAAAAGCACTCTTTGG 60.039 55.000 0.00 0.00 41.40 3.28
369 370 0.039165 GGGCCGAAAAGCACTCTTTG 60.039 55.000 0.00 0.00 41.40 2.77
370 371 0.467290 TGGGCCGAAAAGCACTCTTT 60.467 50.000 0.00 0.00 43.94 2.52
371 372 0.251341 ATGGGCCGAAAAGCACTCTT 60.251 50.000 0.00 0.00 36.97 2.85
372 373 0.618458 TATGGGCCGAAAAGCACTCT 59.382 50.000 0.00 0.00 36.97 3.24
373 374 1.132453 GTTATGGGCCGAAAAGCACTC 59.868 52.381 0.00 0.00 36.97 3.51
374 375 1.173913 GTTATGGGCCGAAAAGCACT 58.826 50.000 0.00 0.00 36.97 4.40
375 376 1.135402 CAGTTATGGGCCGAAAAGCAC 60.135 52.381 0.00 0.00 36.41 4.40
376 377 1.173043 CAGTTATGGGCCGAAAAGCA 58.827 50.000 0.00 0.00 0.00 3.91
377 378 0.179137 GCAGTTATGGGCCGAAAAGC 60.179 55.000 0.00 0.00 0.00 3.51
378 379 0.098728 CGCAGTTATGGGCCGAAAAG 59.901 55.000 0.00 0.00 32.05 2.27
379 380 0.606944 ACGCAGTTATGGGCCGAAAA 60.607 50.000 0.00 0.00 37.78 2.29
380 381 1.003112 ACGCAGTTATGGGCCGAAA 60.003 52.632 0.00 0.00 37.78 3.46
381 382 2.666207 ACGCAGTTATGGGCCGAA 59.334 55.556 0.00 0.00 37.78 4.30
393 394 1.927895 ATTAAGCCGAAGAGACGCAG 58.072 50.000 0.00 0.00 0.00 5.18
394 395 3.728076 ATATTAAGCCGAAGAGACGCA 57.272 42.857 0.00 0.00 0.00 5.24
395 396 4.382160 GTGTATATTAAGCCGAAGAGACGC 59.618 45.833 0.00 0.00 0.00 5.19
396 397 4.916249 GGTGTATATTAAGCCGAAGAGACG 59.084 45.833 0.00 0.00 0.00 4.18
397 398 4.916249 CGGTGTATATTAAGCCGAAGAGAC 59.084 45.833 0.00 0.00 44.57 3.36
398 399 4.823442 TCGGTGTATATTAAGCCGAAGAGA 59.177 41.667 1.27 0.00 46.81 3.10
399 400 5.117355 TCGGTGTATATTAAGCCGAAGAG 57.883 43.478 1.27 0.00 46.81 2.85
404 405 5.466819 TGATCTTCGGTGTATATTAAGCCG 58.533 41.667 0.00 0.00 43.32 5.52
405 406 7.201444 CGATTGATCTTCGGTGTATATTAAGCC 60.201 40.741 9.82 0.00 33.05 4.35
406 407 7.328737 ACGATTGATCTTCGGTGTATATTAAGC 59.671 37.037 18.49 0.00 40.83 3.09
407 408 8.744008 ACGATTGATCTTCGGTGTATATTAAG 57.256 34.615 18.49 0.00 40.83 1.85
408 409 7.536281 CGACGATTGATCTTCGGTGTATATTAA 59.464 37.037 18.49 0.00 42.57 1.40
409 410 7.019418 CGACGATTGATCTTCGGTGTATATTA 58.981 38.462 18.49 0.00 42.57 0.98
410 411 5.856986 CGACGATTGATCTTCGGTGTATATT 59.143 40.000 18.49 0.59 42.57 1.28
411 412 5.391449 CGACGATTGATCTTCGGTGTATAT 58.609 41.667 18.49 1.17 42.57 0.86
412 413 4.779987 CGACGATTGATCTTCGGTGTATA 58.220 43.478 18.49 0.00 42.57 1.47
413 414 3.629058 CGACGATTGATCTTCGGTGTAT 58.371 45.455 18.49 2.31 42.57 2.29
414 415 3.060978 CGACGATTGATCTTCGGTGTA 57.939 47.619 18.49 0.00 42.57 2.90
415 416 1.909376 CGACGATTGATCTTCGGTGT 58.091 50.000 18.49 2.89 42.57 4.16
419 420 0.249073 AGGCCGACGATTGATCTTCG 60.249 55.000 14.46 14.46 44.86 3.79
420 421 2.795175 TAGGCCGACGATTGATCTTC 57.205 50.000 0.00 0.00 0.00 2.87
421 422 3.118738 ACTTTAGGCCGACGATTGATCTT 60.119 43.478 0.00 0.00 0.00 2.40
422 423 2.431057 ACTTTAGGCCGACGATTGATCT 59.569 45.455 0.00 0.00 0.00 2.75
423 424 2.822764 ACTTTAGGCCGACGATTGATC 58.177 47.619 0.00 0.00 0.00 2.92
424 425 2.981859 ACTTTAGGCCGACGATTGAT 57.018 45.000 0.00 0.00 0.00 2.57
425 426 3.018856 TCTACTTTAGGCCGACGATTGA 58.981 45.455 0.00 0.00 0.00 2.57
426 427 3.114065 GTCTACTTTAGGCCGACGATTG 58.886 50.000 0.00 0.00 0.00 2.67
427 428 3.022406 AGTCTACTTTAGGCCGACGATT 58.978 45.455 0.00 0.00 0.00 3.34
428 429 2.358267 CAGTCTACTTTAGGCCGACGAT 59.642 50.000 0.00 0.00 0.00 3.73
429 430 1.741706 CAGTCTACTTTAGGCCGACGA 59.258 52.381 0.00 0.00 0.00 4.20
430 431 1.202268 CCAGTCTACTTTAGGCCGACG 60.202 57.143 0.00 0.00 0.00 5.12
431 432 2.097825 TCCAGTCTACTTTAGGCCGAC 58.902 52.381 0.00 0.00 0.00 4.79
432 433 2.519771 TCCAGTCTACTTTAGGCCGA 57.480 50.000 0.00 0.00 0.00 5.54
433 434 3.056035 ACTTTCCAGTCTACTTTAGGCCG 60.056 47.826 0.00 0.00 0.00 6.13
434 435 4.554960 ACTTTCCAGTCTACTTTAGGCC 57.445 45.455 0.00 0.00 0.00 5.19
435 436 4.936411 GGAACTTTCCAGTCTACTTTAGGC 59.064 45.833 2.93 0.00 46.76 3.93
450 451 3.430556 GCTGAAGTCGAAGAGGAACTTTC 59.569 47.826 0.00 0.00 41.55 2.62
451 452 3.181465 TGCTGAAGTCGAAGAGGAACTTT 60.181 43.478 0.00 0.00 41.55 2.66
452 453 2.365617 TGCTGAAGTCGAAGAGGAACTT 59.634 45.455 0.00 0.00 41.55 2.66
454 455 2.333014 CTGCTGAAGTCGAAGAGGAAC 58.667 52.381 0.00 0.00 36.95 3.62
455 456 1.273606 CCTGCTGAAGTCGAAGAGGAA 59.726 52.381 0.00 0.00 36.95 3.36
456 457 0.891373 CCTGCTGAAGTCGAAGAGGA 59.109 55.000 0.00 0.00 36.95 3.71
457 458 0.739112 GCCTGCTGAAGTCGAAGAGG 60.739 60.000 0.00 0.00 36.95 3.69
458 459 0.739112 GGCCTGCTGAAGTCGAAGAG 60.739 60.000 0.00 0.00 36.95 2.85
459 460 1.293498 GGCCTGCTGAAGTCGAAGA 59.707 57.895 0.00 0.00 0.00 2.87
460 461 2.097038 CGGCCTGCTGAAGTCGAAG 61.097 63.158 0.00 0.00 0.00 3.79
461 462 2.048222 CGGCCTGCTGAAGTCGAA 60.048 61.111 0.00 0.00 0.00 3.71
462 463 2.989253 TCGGCCTGCTGAAGTCGA 60.989 61.111 0.00 0.00 0.00 4.20
463 464 2.811317 GTCGGCCTGCTGAAGTCG 60.811 66.667 0.00 0.00 32.55 4.18
464 465 1.739562 CTGTCGGCCTGCTGAAGTC 60.740 63.158 0.00 0.00 32.55 3.01
465 466 2.345244 CTGTCGGCCTGCTGAAGT 59.655 61.111 0.00 0.00 32.55 3.01
466 467 1.888436 TACCTGTCGGCCTGCTGAAG 61.888 60.000 0.00 3.25 32.55 3.02
467 468 1.476845 TTACCTGTCGGCCTGCTGAA 61.477 55.000 0.00 0.00 32.55 3.02
468 469 1.264749 ATTACCTGTCGGCCTGCTGA 61.265 55.000 0.00 0.00 0.00 4.26
469 470 0.464036 TATTACCTGTCGGCCTGCTG 59.536 55.000 0.00 0.00 0.00 4.41
470 471 0.753262 CTATTACCTGTCGGCCTGCT 59.247 55.000 0.00 0.00 0.00 4.24
471 472 0.464452 ACTATTACCTGTCGGCCTGC 59.536 55.000 0.00 0.00 0.00 4.85
472 473 4.307432 CAATACTATTACCTGTCGGCCTG 58.693 47.826 0.00 0.00 0.00 4.85
473 474 3.323979 CCAATACTATTACCTGTCGGCCT 59.676 47.826 0.00 0.00 0.00 5.19
474 475 3.322828 TCCAATACTATTACCTGTCGGCC 59.677 47.826 0.00 0.00 0.00 6.13
475 476 4.595762 TCCAATACTATTACCTGTCGGC 57.404 45.455 0.00 0.00 0.00 5.54
476 477 8.446599 AAAAATCCAATACTATTACCTGTCGG 57.553 34.615 0.00 0.00 0.00 4.79
580 581 4.464597 ACAAAGAGTCCGAGAAGCTAGAAT 59.535 41.667 0.00 0.00 0.00 2.40
601 602 9.793259 AGTAAATGAGAAATTAAGTCAAGGACA 57.207 29.630 0.00 0.00 34.60 4.02
661 663 6.867662 ATTCCTCGAATGATTGTAATGTCC 57.132 37.500 0.00 0.00 30.42 4.02
756 764 4.553323 AGCAACTGATGAGCATTGTTTTC 58.447 39.130 0.00 0.00 0.00 2.29
924 940 0.834687 GTGAGGGGGTGAGTGGTGTA 60.835 60.000 0.00 0.00 0.00 2.90
1104 1120 3.854459 CGCGGCCGCTTCTTCTTC 61.854 66.667 43.60 15.84 39.32 2.87
1481 1511 3.847602 CAGAGGCAGAGGCGGAGG 61.848 72.222 0.00 0.00 42.47 4.30
1482 1512 4.527583 GCAGAGGCAGAGGCGGAG 62.528 72.222 0.00 0.00 42.47 4.63
1485 1515 4.527583 GAGGCAGAGGCAGAGGCG 62.528 72.222 0.00 0.00 43.71 5.52
1486 1516 3.082701 AGAGGCAGAGGCAGAGGC 61.083 66.667 0.00 0.00 43.71 4.70
1487 1517 2.901813 CAGAGGCAGAGGCAGAGG 59.098 66.667 0.00 0.00 43.71 3.69
1488 1518 2.187424 GCAGAGGCAGAGGCAGAG 59.813 66.667 0.00 0.00 43.71 3.35
1489 1519 3.397439 GGCAGAGGCAGAGGCAGA 61.397 66.667 0.00 0.00 43.71 4.26
1490 1520 3.388703 GAGGCAGAGGCAGAGGCAG 62.389 68.421 0.00 0.00 43.71 4.85
1491 1521 3.397439 GAGGCAGAGGCAGAGGCA 61.397 66.667 0.00 0.00 43.71 4.75
1492 1522 4.527583 CGAGGCAGAGGCAGAGGC 62.528 72.222 0.00 0.00 43.71 4.70
1493 1523 4.527583 GCGAGGCAGAGGCAGAGG 62.528 72.222 0.00 0.00 43.71 3.69
1494 1524 4.527583 GGCGAGGCAGAGGCAGAG 62.528 72.222 0.00 0.00 43.71 3.35
1518 1560 2.265739 GCATCCTCAGCGGTGTCA 59.734 61.111 15.22 0.00 0.00 3.58
1596 1638 4.717629 CACGAGGAGGCGCACGAA 62.718 66.667 10.83 0.00 33.86 3.85
1766 1818 2.602746 GATTTCCGGCCCGATGTGGA 62.603 60.000 3.71 0.00 42.00 4.02
1914 1966 3.511146 ACACAAACATATTCTTGCCCCAG 59.489 43.478 0.00 0.00 0.00 4.45
1949 2006 4.336713 AGAAGGAATAAAAAGGAGATGCGC 59.663 41.667 0.00 0.00 0.00 6.09
1981 2040 3.052620 GCTCGACCACTAGCGCTCA 62.053 63.158 16.34 0.00 0.00 4.26
2142 2217 4.277476 AGATCAAATTAATCAACCGGCCA 58.723 39.130 0.00 0.00 0.00 5.36
2189 2264 9.675464 TCCAAGGACGAATAAAAATATGTAACT 57.325 29.630 0.00 0.00 0.00 2.24
2200 2275 8.624367 TCAAGTAATTTCCAAGGACGAATAAA 57.376 30.769 0.00 0.00 0.00 1.40
2221 2296 8.822652 AAGGATTGAAATTGTAAAAGCTCAAG 57.177 30.769 0.00 0.00 29.32 3.02
2285 2360 6.928492 GTGATATTTTCAACCTCCTGCAAAAA 59.072 34.615 0.00 0.00 35.70 1.94
2286 2361 6.454795 GTGATATTTTCAACCTCCTGCAAAA 58.545 36.000 0.00 0.00 35.70 2.44
2287 2362 5.335583 CGTGATATTTTCAACCTCCTGCAAA 60.336 40.000 0.00 0.00 35.70 3.68
2288 2363 4.155826 CGTGATATTTTCAACCTCCTGCAA 59.844 41.667 0.00 0.00 35.70 4.08
2289 2364 3.689161 CGTGATATTTTCAACCTCCTGCA 59.311 43.478 0.00 0.00 35.70 4.41
2290 2365 3.487544 GCGTGATATTTTCAACCTCCTGC 60.488 47.826 0.00 0.00 35.70 4.85
2291 2366 3.242413 CGCGTGATATTTTCAACCTCCTG 60.242 47.826 0.00 0.00 35.70 3.86
2292 2367 2.936498 CGCGTGATATTTTCAACCTCCT 59.064 45.455 0.00 0.00 35.70 3.69
2293 2368 2.538939 GCGCGTGATATTTTCAACCTCC 60.539 50.000 8.43 0.00 35.70 4.30
2294 2369 2.351726 AGCGCGTGATATTTTCAACCTC 59.648 45.455 8.43 0.00 35.70 3.85
2295 2370 2.351726 GAGCGCGTGATATTTTCAACCT 59.648 45.455 8.43 0.00 35.70 3.50
2296 2371 2.095213 TGAGCGCGTGATATTTTCAACC 59.905 45.455 8.43 0.00 35.70 3.77
2297 2372 3.345714 CTGAGCGCGTGATATTTTCAAC 58.654 45.455 8.43 0.00 35.70 3.18
2338 2418 1.019673 CTCGCTACAGCCCTACGTAA 58.980 55.000 0.00 0.00 37.91 3.18
2339 2419 1.442526 GCTCGCTACAGCCCTACGTA 61.443 60.000 0.00 0.00 37.91 3.57
2340 2420 2.772691 GCTCGCTACAGCCCTACGT 61.773 63.158 0.00 0.00 37.91 3.57
2341 2421 2.026301 GCTCGCTACAGCCCTACG 59.974 66.667 0.00 0.00 37.91 3.51
2375 2455 0.031314 CAGTCCATGTCGCTATCGCT 59.969 55.000 0.00 0.00 35.26 4.93
2380 2460 3.945981 TTTGTACAGTCCATGTCGCTA 57.054 42.857 0.00 0.00 42.70 4.26
2387 2467 2.159382 CCCGCTTTTTGTACAGTCCAT 58.841 47.619 0.00 0.00 0.00 3.41
2427 2508 1.271102 GATACAGGCACGGATCTCTCC 59.729 57.143 0.00 0.00 38.29 3.71
2620 2710 1.122019 AACCACTCCGCTGTCCTCTT 61.122 55.000 0.00 0.00 0.00 2.85
2672 2767 4.713285 CCCCACCCCGGCCAAAAT 62.713 66.667 2.24 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.