>input_sequence_71681
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-------------------------------------------------------ATGGGCGCCACGGAGGATTCCTCCT
CCGGCTCCGAGACCACCACCTCGTCCTCGGTGGAGGCCCTGGCCTCGCCGCCGTCCCCGACGGCCACCACCGCGTCGTCG
AAGAAGAAGCGGCCGCGCAACGACGGGCGGCACCCGACGTACCGCGGGGTGCGCATGCGGAGCTGGGGCAAGTGGGTGTC
GGAGATTCGGGAGCCCCGCAAGAAGTCGCGCATCTGGCTCGGCACCTTCGCCACCGCGGAGATGGCGGCGCGCGCGCACG
ACGTGGCCGCCCTCGCCATCAAGGGCCGTGCCGCGCACCTCAACTTCCCCGACCTCGCCCACGAGCTCCCGCGCCCGGCC
ACCGCCGCGCCCAAAGACGTCCAGGCGGCCGCCGCACTCGCCGCCTCCGCCGACTTCCCGGCCTCTGCCACTGCAGCTGC
CAATGCCGGCGCCAAGAACCCCGACGGCCCGGAACACAG--------------CGGCGCCTCCGCCTCTGCCTCCGCCTC
TGCCTCTGCCTC------------TGCCTCGCCGCCGCCTGACACCGCTGAGGATGCGCTGTTCGACCTCCCCGACCTCC
TCTTCGACCTCAGACACGGCCCTCCGTCCTGCCAGCTTTCGTGCGCCTCCTCGTGGGACGACGACGTGGCCTTCGCCGGC
CCTGGCGCCGGCGTGTTCCGCCTGGAGGAGCCGCTGCAGTGGGAGTACTAA-----------------------------
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>chr6B_1_TraesCS6B01G274200
GCTAAGGAAAGATGCAGATGACAACAAGCGAGCGGGTGGTTTTATAGAATGAGGGTAAGGGGTTCGCGAGAAAATTGGAC
GGGAAAGAAAATGACAGGAAGGAAGATGACGAGAAACAAGATGTCGGGAAAGAAATTGGCGGGAATAAATGGAAGGAAAG
GGTTGACGGGAAAAAAAGAGCGGGAACGCTACATGGTTAAGGTGGGGAAACCATGTACTCGACAAGATAAACCAGTTGTC
GAAAAAGGACTCTTCGACCTGGTAAAAACCACAGAGTGGTGCCATGCAACTTCGGTCTACAGTTTACGCGAAGAGTTGGG
CCTGAGAGGCCTCTTTGAACTAGAGTAAACTCTTCGGCCTACGGAAAACCAAAGAGTGCTTTTCGGCCCATAACTGCGTC
TCTTCGGCTTAATATACACCGAAGATCAATCGTCGGCCTAAAGTAGACTGGAAAGTTCCTCTTCGACTTCAGCAGGCCGA
CAGGTAATAGTATTGGATTTTTTATTTAGGGCGTATATTTTTTGAATTTGTTATTAAAAATAATATATTTTAAAAAAAAT
CTACTCCTTTAGCACTAGATATTCTAGCTTCTCGGACTCTTTGTCCTTGACTTAATTTCTCATTTACTTTTTT-CTGCGG
GGATTTCTCATTTACTTGTAAAGGACATTA---CAATCATTCGAGGAATAAAGTCTATTTGCTGTAAATAAAATAAATAG
TTGCAAGAG---AATAAAAAGATTAAAACTTGTTTAATCGCTCGAAAACAATGCTCATCAGTTGCTCAGTTCCCAAAGGC
CAACACGCTGGCCTCACGCCTTCCCCCATTCGATTCCCCGCTTTGTTTTTCCTTTCCACGTTG---CTCCCTCCGCCTCA
TCTGCTCTGCTCATCATAAAACCTCCCACT-----GCCTTGCCTCGCATCCCACCGCAATACACCACTCACCCCCTCACG
CTCTCGCTCATCACCCCCCCAACAACTAACTCCACCACCACAGTATCAATCAGCCATGGGCGCCACGGAGGATTCCTCCT
CCGGCTCCGAGACCACCACCTCGTCCTCGGTGGAGGCCCTGGCCTCGCCGCCGTCCCCGACGGCCACCACCGCGTCGTCG
AAGAAGAAGCGGCCGCGCAACGACGGGCGGCACCCGACGTACCGCGGGGTGCGCATGCGGAGCTGGGGCAAGTGGGTGTC
GGAGATTCGGGAGCCCCGCAAGAAGTCGCGCATCTGGCTCGGCACCTTCGCCACCGCGGAGATGGCGGCGCGCGCGCACG
ACGTGGCCGCCCTCGCCATCAAGGGCCGTGCCGCGCACCTCAACTTCCCCGACCTCGCCCACGAGCTCCCGCGCCCGGCC
ACCGCCGCGCCCAAAGACGTCCAGGCGGCCGCCGCACTCGCCGCCTCCGCCGACTTCCCGGCCTCTGCCACTGCAGCTGC
CAATGCCGGCGCCAAGAACCCCGACGGCCCGGAACACAG--------------CGGCGCCTCCGCCTCTGCCTCCGCCTC
TGCCTCTGCCTC------------TGCCTCGCCGCCGCCTGACACCGCTGAGGATGCGCTGTTCGACCTCCCCGACCTCC
TCTTCGACCTCAGACACGGCCCTCCGTCCTGCCAGCTTTCGTGCGCCTCCTCGTGGGACGACGACGTGGCCTTCGCCGGC
CCTGGCGCCGGCGTGTTCCGCCTGGAGGAGCCGCTGCAGTGGGAGTACTAAAGCCAGGCGCCAACTCGCTCAGTCACCGG
TGCCATCAAACCGCGCCGCCGCTGCATGCATGTATGGCTCGT------TC----GTTTCCACATCGGGCCGGAAATCATT
TCGAAACCATTGGAGAACCAAAAGAAGGAAGCAAAACCACTGGAGTACTACTAAATTTAGGAGTGAGACCATGTACAAAT
TGGGGTTAGCCTTGTGTTCTTTATCGTATTTGCTTTGCGTGGATTCTGGGGCAAGAATATG--TTTGTGTGTGCAATTAA
CA---GCGCATCTCCTTTTTATTCCTTC--TTTTTTTAGTGAGCGCTAGTGGT----------------CGAGCGGGATT
TGTTGGACTAATGCGGCACGAAATGCTTTAAAGACGCACCTTTTAAATTACGGCGATATTCGACCGGTCCTTTCACTCCA
CTGATCCGGCACAAAGCGCCGGCAGCAATCATGCATTCAACCTCGACCCCATATTCTGGCCGGTTGATTAATTTGATCTT
CTCTTTTTATATGATGAGGCTGGAGTTACATATTTTTATTCGTCCTTGGAAATTACTTGAGCTTTTACAATTTCAATCCT
TACAAATTAGAGCTGGAACCAGTTGAAAATAAATTTATTTTTTTGCAGGAGGTTGAAAATATCACGCGCTCAGCTCGCGA
ATAGGTA-----CGTACTTACGTAGGGCTGTAGCGAGCCGGCCAGGAGGGGGAGAGCGATAGCGACATGGACTGTACAAA
AAGCGGG-CTGCTTGTTGTAAACCCGCGGAGAGATCCGTGCCTGTATCGCGCGATCGGTCGCCATCGTCGCTGGCTGGCC
CGGACGAGCGTGCGCCGCTTGCGTGAGTACGGGCCGGGTCGCTGGCTCGGCGGTGGAATATTTTGGGCGCGTCCGCCTCG
TCGGGAGCCCGTTGGCGTGGAT---CGTCCGTCGCT------GACATGCATGCATGGGAGGGGAGGGATA-----AGAGG
ACAGCGGAGTGGTTGCGCGCGTGTAAATGGCGCCATGTTTACGTACATTTTGGCCGGGGTGGGG
>chr6D_562
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-TACTACTCTAGCACTAGATCTTCTAGTTTCTCTGACTCTTCGTCCTTGACTTTA-TTCTCATTTACTTTTTTTCTGCGG
GGATTTCTCATTTACTTGTAAACGACATTA---CAATCATTTGAGGAATAAAGTCTATTTGCTGTAAACAAAAAAAATAG
CTGCAAGAG---AATAAAAAGATTAAAACTTGTTTAATCGCTCAAAAACAATGCTCATCAGTTGCTCAGTTCCCAAAGGC
CAACACGCTGGCCTCACGCCTCCCCCCATTCGATTCCCCGCTTTGTTTTTCCTTTCCACGTTG---CTCCCTCCGCCTCA
TCTGCTCTGCTCATCATAAAACCTCCCAGT-----GCCTTGCCTCGCATCCCACCGCAACACACCACTCACCTCCTCACG
CTCTCGCCCATCACTCCCCAACAAC--AACTCCACCACCACAGTATCA-TCAGCCGTGGGCGCCACGGAGGATTCCTCCT
CCGGCTCCGAGACCACCACGTCGTCCTCGGTGGAGGCCCTGGCCTCGCCGCCGTCCCCGACGGCCACCACCGCGTCGTCC
AAGAAGAAGCGGCCGCGCAACGACGGGCGGCACCCGACGTACCGCGGGGTGCGCATGCGGAGCTGGGGCAAGTGGGTGTC
GGAGATTCGGGAGCCCCGCAAGAAGTCGCGCATCTGGCTCGGCACCTTCGCCACGGCGGAGATGGCGGCGCGCGCGCACG
ACGTGGCCGCCCTCGCCATCAAGGGCCGTGCCGCGCACCTCAACTTCCCCGACCTCGCCCACGAGCTCCCGCGCCCGGCC
ACCGCCGCGCCCAAAGACGTCCAGGCGGCCGCCGCACTCGCCGCCTCCGCCGACTTCCCGGCCTCTGCCACTGCAGCTGC
CAATGCCGGCGCCAAGAATCCCGACGGCCCGGAACCCAG--------------CGCCGCCTCC-----------------
-------GCCTC------------TGCCTCGCCGCCGCCGGACACCGCTGAGGATGCGCTGTTCGACCTCCCCGACCTCC
TCTTCGACCTCAGACACGGCCCTCCGTCCTGCCAGCTCTCGTGCGCCTCCTCGTGGGACGACGACGTGGCCTTCGCCGGC
GCCGGCGCCGGCGTGTTCCGCCTGGAGGAGCCGCTGCAGTGGGAGTACTAAATCCAGACGCCAACTCGCTCAGTCACCGG
TGTCATCAAACCGCGCCGCCGCTGCATGCATGTATGGCTCGTAGGTGCTC----GTTACCACATCGGGCCGGAAATCATT
TCGAAACCATTGGAGAACCAAAAGAAGGAAGCAAAACCACTGGAGTACTACTAAATTTAGGAGTGAGACCATGTACAAAT
TGGGGTTAGCCTTGTGTTCTTTATCGTATTTGCTTTGCGTGGATTGTGGGGCAAGAATATG--TTTGTGTGTGCAATTAA
CAACACCGCATCTCCTTTTTTCTTCCTTCTTTCTTTTAGCGAGCGCTAGTGGTAGTAAAGGCGATCGGACGAGCGGGATT
TGTTGGACTAATGCGGCACGAAATGCTTTAAGGACGCACCTTTTAAATTACGGCGATATTCGACCGGTCCATTCACTCCA
CTGATCCGGCCCAAAGCGCCGGCAGCAATCATGCATTCAACCTCGATCCCATATTCCGGCCGGTTGATTAATTTGATCTT
CTCTTTTTATATGATGAGGCTGGGGTTACATATTCTTATTCGTCCTTGGAAATTAGTTGAAC-TTTACAATTTCAATCCT
TACAAATTAGAGCTGGAGCCAG------------------------------TTGAAAATATCACGCGCTCAGCTCGCGA
ATAGGTA-----CGTAC----GTAGGGCTGTAGCGAGACGGCCAGGAGGGGGAGGGCGAAAGCGACGTGGACTGTACAAA
AAGCGGGGCTGCTTGTTGTAA-------GAGAGATCCGTGCCTGTATCGCGCGATCGGTCGCCATCGTCGCTGGCTGGCC
CGGACGAGCGTGCGCCGCTTGCGTGCGTTCGGGCCGGGTCGCTGGCTCGGCGGTGGAATATTTTGGGCGCGTCCGCCTCG
TCGGGAGCCCGTTGGCGTGGAT---CGTCCGTCCGTCGCTGAGACATGCATGCATGGGAGGGGAGGGGAGGGACGAGAGG
ACAGCGGAGTGGTTGCGCGCGTGTAAATGGCGCCATGTTTACGTACGTTTTGGCCGGGGTGGGG
>chr6A_562
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-TACTCCGTTAGCACTAGATCTTCTAGCTTCTCGGACTCTTCGTCCTTGACTTTA-TTCTCATCTACTTTTTTT--GCGG
GGATTTCTCATTTACTTATAAACGACATTAGTACAACCATTCGAGGAATAAAGTCTATTTGCTGTAAACAAAAAAGATAA
CTGCAAGAGAATAATAAAAAGATAAAAGCTTGTTTAATCGCTCAGAAACAATGCTCATCAGTTGCTCAGTTCCCAAAGGC
CAACACGCTGGCCTCACGCCTTCCCCCATTCGATTCCCCGCTTTGTTTTTCCTTTCCATGTTGCTCCTCCCTCCGCCTCA
TCTGCTCTGCTCATCATAAAACCTCCCACTGCCTCGCCTCGCCTCGCATCCCACCGCAGCACACCACTCACCTCCTCACG
CTCTCGCTCATCACTCCCCCAACAACTAACTCCACCACCACAGTATCA-TCAGCCATGGGCGCCACGGAGGATTCCTCCT
CCGGCTCCGAGACCACCACGTCGTCCTCGGCGGAGGCCCTGGCCGCGCCGCCGTCCCCGACGGCCACCACCGCGTCGTCC
AAGAAGAAGCGGCCGCGCAACGACGGGCGGCACCCGACGTACCGCGGGGTGCGCATGCGGAGCTGGGGCAAGTGGGTGTC
GGAGATTCGGGAGCCCCGCAAGAAGTCGCGCATCTGGCTCGGCACCTTCGCCACCGCGGAGATGGCGGCGCGCGCGCACG
ACGTGGCCGCCCTCGCCATCAAGGGCCGCGCCGCGCACCTCAACTTCCCCGACCTCGCCCACGAGCTCCCGCGCCCGGCC
ACCGCCGCGCCCAAGGACGTCCAGGCGGCCGCCGCACTTGCCGCCTCCGCCGACTTCCCGGCCTCTGCCACTGCAGCTGC
CAATGCCGGCGCCAAGAACCCCGACGGCCCGGAACCCAG--------------CGCCGCCTCC-----------------
-------GCCTCAGCCTCTGCCTCTGCCTCGGCGCCGCCGGACACCGCTGAGGATGCGCTGTTCGACCTCCCCGACCTCC
TCTTCGACCTCAGACACGGCCCTCCGTCCTGCCAGCTCTCATGCGCCTCCTCGTGGGACGACGACGTGGCCTTCGCCGGC
CCCGGCGCCGGCGTGTTCCGCCTGGAGGAGCCGCTGCAGTGGGAGTACTAAAGCCA------------------------
-----TCAAGCCGCGCCGCCGCTGCATGCATGTATGGCTCGTAGGTGCTCCCTCGTTGCCACATCGGGCCGGAAATCATT
TCGGAACCATTGGAGAACCAAAAGAAGGAAGCAAAACCACTGGAGTACTACTAAATTTAGGAGTGAGGCCATGTACAAAT
TGGGGTTAGCCTCGTGTTCTTTATCGTATTTGCTTTGCGTGGATTGTGGGGCAAGAATATGTTTTTGTGTGTGCAATTAA
CA---CCGCATCTCCTTTTTCTTCCTTGTTTCTTTTTAGCGAGCGCTAGTGGTGGTAAAGGCGATCGGCCGAGCGGGATT
TGTTGGACTAATGCGGCACGAAATGCTTTAAAGATGCGGCTTTTAAATTACGGCGATATTCGACCGGTCCTCTCACTCCA
CTGATCCGGCCCAAAGCGCCGGCAGCAATCATGCATTCAACCTCGATCCCATATTCCGGCCGGTCGATTAATTCGATCTT
CTCTTTTTATAT---------------------TCTCATTCGTCCAA--------------CTTTTACAATTTCAATCCT
TAGAAATTAGAGCTGGAAGCAG------------------------------CTGAAAATATCACGCGCTCAGCTTGCGA
ATAGGTAGAGTACGTAC----GTAGGGCTGTAGCGAGCCGGCTAGGAGGGGGAGGGCGAAAGCGACGTGGACTGTACAAA
AAGCGGGGCTGCTTGTTGCAA-------GAGAGATCCGTGCCTGTATCGCGCGATCGGTCGCCATCGTCGCGGGCTGGCC
CGGACGAGCGTGCGCCGCTTGCGTGCGGACGGGCCGGGTCGCTGGCTCGGCGGTGGAATATTTTGGGCGCGTCCGCCTCG
TCGCGAGCCCTTTGGCGCGATCGTCCGTCCGTCGCT------GACATGCATGCATGGGAGGGGAGGGAT-----GAGAGG
ACAGCGGAGTGGTTGCGCGCGTGTAAATGGCGCCATGTTTACGTACGTTTTGGCCGGGGTGGGG
>chr2A_1098
CGTCGCCGC-----------------------------------------------------------------------
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--GAACAAGCGGCCGCGCAAGGACAGCCGGCACCCGACCTACCACGGCGTGCGCATGCGGAGCTGGGGCAAGTGGGTGTC
CGAGATCAGGGAGCCTCGCAAGAAGTCGCGCATCTGGCTCGGCACCTTCGCCACCGCCGAGATGGCCGCGCGCGCGCACG
ACGTGGCCACGCTCGCCATCAAGGGCCGCGCCGCGCACCTCAACTTCCCGGACCTCGCGCACCTGCTGCCCCGCCCGGCC
AGCGCCGCGCCCAAGGACGTCCAGGCGGCCGCCATACTCGCCGCCTCCGCCGACTTCCCCTGCGGC------------GC
CAGTGCCAATGCCAAGAGCCCCGACAGCGCCTCCGACGCCAGCGCGGTCTCGCCGCCGCCCCC-----------------
-------GCCTGCACCGCAC-----GCCGAGCCGGTCCAAGACCCGGAAGAC---GCCCTGTTCGACCTCCCCGACCTGC
TCCTGGACCTGAGATATGAGGCCTCGGCGGGC---CTCCCGTGCGCGTCGTCCTGGGTCGTCGACGAGGACATCGT----
--CGGCGCCGGCGTGTTCCGCCTCGAGGAGCCACTCCTGTGGGAGTACT-------------------------------
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>chr2D_1108
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--GAACAAGCGGCCGCGCAAGGACAGCCGGCACCCGACCTACCACGGCGTGCGCATGCGGAGCTGGGGCAAGTGGGTGTC
CGAGATCAGGGAGCCCCGCAAGAAGTCGCGCATCTGGCTCGGCACCTTCGCCACCGCGGAGATGGCCGCGCGCGCCCACG
ACGTGGCCACGCTCGCCATCAAGGGCCGCGCCGCCCACCTCAACTTCCCGGACCTGGCGCACCTGCTGCCCCGCCCGGCC
AGCGCCGCGCCCAAGGACGTCCAGGCGGCCGCCATACTCGCCGCCTCCGCCGACTTCCCCTGCGGC------------GC
CAGTGCCAATGCCAAGAGCCCCGACAGCGGCTCCGACGCCAGCGCCGCCTCGCCGCCGCCTCC-----------------
-------GCCTCCGCCGCAC-----GCCGAACCGGTCCCGGACCCAGAAGAC---GCCCTGTTCGACCTTCCCGACCTGC
TCCTGGACCTGAGATATGAGGCCTCGGCGGGC---CTCCCGTGCGCGTCGTCCTGGGTGGTCGACGAGGACATCGT----
--CGGCGCCGGCGTGTTCCGCCTCGAGGAGCCACTCCTGTGGGAGTACT-------------------------------
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>chr2B_1108
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--GAACAAGCGGCCGCGCAAGGACAGCCGGCACCCGACCTACCACGGCGTACGCATGCGGAGCTGGGGCAAGTGGGTGTC
CGAGATCAGGGAGCCCCGCAAGAAGTCCCGCATCTGGCTCGGCACCTTCGCCACCGCGGAGATGGCCGCGCGGGCCCACG
ACGTGGCGACTCTCGCCATCAAGGGCCGCGCCGCGCACCTCAACTTCCCGGACCTCGCCCACCTGCTGCCCCGCCCGGCC
AGCGCCGCGCCCAAGGACGTCCAGGCGGCCGCCATACTCGCCGCCTCCGCCGACTTCCCCTGCGGC------------GC
CAGTGCCAATGCCAAGAGCCCCGACAGCGGCTCCGATGCCAGCGCAGCCTCGCCGCCGCCGCC-----------------
-------GCCTCCGCCGCAC-----GCCGAGCTGGTCCCGGACCCAGAAGAC---GCCCTGTTCGACCTTCCCGACCTGC
TCCTGGACCTGAGATATGAGGCCTCGGCGGGC---CTCCCGTGCGCGTCGTCCTGGGTGGTCGACGAGGACATCGT----
--CGGCGCCGGCGTGTTCCGCCTCGAGGAGCCACTCCTGTGGGAGTACT-------------------------------
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>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S-------------------S--------------------S-----------S-S------------------------
----------------------S---------------------------------------------S----S------
S------------------------------------------S------------------------------------
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-----------------------------------------------------------S------------S-------
--------------S---------------------------------S-------------------------------
-------------------S-----------------------------------------------------------S
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-------------------------------------------------------S-------SSSSSSSSSSSSSSSSS
SSSSSSS--------------------------------S----------------------------------------
-------------------------------------S------------------------------------------
--S------------------------------------------------------S----------------------
--S------------------------------------------------------S----------------------
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---------------------------------------------S----------------------------------
-----S--------------S------S-----------S----------------------------------------
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----------S-----------------------------------S---------S-----------------------
-----------------------S----------S--------------------S----S-------------------
----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------
-----------------SSSS---------------------------------S----S------S-------------
---------------------SSSSSSS----------------------------------------------------
-------------------------S------------------------------------------------------
---------------------------------------------------------------------S----------
----------------------------------------------S-----------------
>forward_370
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------------------------------TCTTCGGCCTACGGAAAACC------------------------------
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>reverse_2418
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-----------------TTACGTAGGGCTGTAGCGAG-------------------------------------------
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