Multiple sequence alignment - TraesCS6B01G268000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G268000 chr6B 100.000 3148 0 0 1 3148 481739300 481742447 0.000000e+00 5814.0
1 TraesCS6B01G268000 chr6D 94.306 1282 56 8 903 2172 338739945 338738669 0.000000e+00 1947.0
2 TraesCS6B01G268000 chr6D 83.254 836 86 21 2360 3148 338738671 338737843 0.000000e+00 719.0
3 TraesCS6B01G268000 chr6D 90.634 331 25 2 1 331 13140606 13140930 4.820000e-118 435.0
4 TraesCS6B01G268000 chr6D 87.143 140 13 5 2156 2293 303526806 303526942 1.510000e-33 154.0
5 TraesCS6B01G268000 chr6D 100.000 38 0 0 849 886 13140942 13140979 1.570000e-08 71.3
6 TraesCS6B01G268000 chr6A 93.106 1262 67 7 921 2169 479268594 479267340 0.000000e+00 1831.0
7 TraesCS6B01G268000 chr6A 89.728 331 34 0 1 331 57650799 57650469 1.040000e-114 424.0
8 TraesCS6B01G268000 chr6A 93.333 45 1 1 849 893 57650312 57650270 7.290000e-07 65.8
9 TraesCS6B01G268000 chr6A 93.333 45 1 1 849 893 57650457 57650415 7.290000e-07 65.8
10 TraesCS6B01G268000 chr2B 90.458 524 39 7 325 839 535008287 535008808 0.000000e+00 680.0
11 TraesCS6B01G268000 chr2B 91.089 404 31 3 331 730 443176215 443176617 2.760000e-150 542.0
12 TraesCS6B01G268000 chr4B 86.756 521 53 11 331 839 514481143 514481659 1.640000e-157 566.0
13 TraesCS6B01G268000 chr4B 90.332 331 31 1 1 331 57411487 57411816 1.730000e-117 433.0
14 TraesCS6B01G268000 chr4B 89.362 329 34 1 3 331 317302987 317303314 2.260000e-111 412.0
15 TraesCS6B01G268000 chr4B 90.299 134 9 4 2162 2293 467918238 467918369 4.170000e-39 172.0
16 TraesCS6B01G268000 chr7D 93.051 331 21 2 1 331 597895336 597895664 1.700000e-132 483.0
17 TraesCS6B01G268000 chr7D 92.145 331 25 1 1 331 136315995 136315666 1.710000e-127 466.0
18 TraesCS6B01G268000 chr7D 95.556 45 0 1 849 893 136315654 136315612 1.570000e-08 71.3
19 TraesCS6B01G268000 chr7D 89.831 59 1 2 849 902 597895676 597895734 1.570000e-08 71.3
20 TraesCS6B01G268000 chr7A 90.634 331 29 2 1 331 108765826 108766154 3.730000e-119 438.0
21 TraesCS6B01G268000 chr7A 89.630 135 11 3 2161 2292 56241993 56241859 5.400000e-38 169.0
22 TraesCS6B01G268000 chr7A 84.167 120 18 1 2435 2553 661295709 661295590 7.130000e-22 115.0
23 TraesCS6B01G268000 chr5B 90.030 331 33 0 1 331 411806633 411806963 2.240000e-116 429.0
24 TraesCS6B01G268000 chr3A 89.728 331 34 0 1 331 565476489 565476819 1.040000e-114 424.0
25 TraesCS6B01G268000 chr3A 90.441 136 10 3 2159 2293 703421776 703421643 3.230000e-40 176.0
26 TraesCS6B01G268000 chr2A 92.126 127 7 3 2168 2293 537476714 537476590 3.230000e-40 176.0
27 TraesCS6B01G268000 chr2A 87.234 141 12 6 2157 2293 629108405 629108543 4.200000e-34 156.0
28 TraesCS6B01G268000 chr5D 91.803 122 8 2 2173 2293 551611299 551611179 5.400000e-38 169.0
29 TraesCS6B01G268000 chr4A 89.552 134 11 3 2162 2293 83316837 83316705 1.940000e-37 167.0
30 TraesCS6B01G268000 chr5A 88.971 136 12 3 2159 2293 10831074 10831207 6.990000e-37 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G268000 chr6B 481739300 481742447 3147 False 5814 5814 100.000 1 3148 1 chr6B.!!$F1 3147
1 TraesCS6B01G268000 chr6D 338737843 338739945 2102 True 1333 1947 88.780 903 3148 2 chr6D.!!$R1 2245
2 TraesCS6B01G268000 chr6A 479267340 479268594 1254 True 1831 1831 93.106 921 2169 1 chr6A.!!$R1 1248
3 TraesCS6B01G268000 chr2B 535008287 535008808 521 False 680 680 90.458 325 839 1 chr2B.!!$F2 514
4 TraesCS6B01G268000 chr4B 514481143 514481659 516 False 566 566 86.756 331 839 1 chr4B.!!$F4 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
876 888 0.036022 GTGGCTGGCTCATAGGATCC 59.964 60.0 2.48 2.48 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2861 2928 0.037697 TCTCCATCACCCGTTTGTCG 60.038 55.0 0.0 0.0 39.52 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.702081 GTGGAGCACGACGACGCT 62.702 66.667 14.69 14.69 43.96 5.07
25 26 4.702081 AGCACGACGACGCTCACC 62.702 66.667 7.30 0.00 43.96 4.02
29 30 4.813526 CGACGACGCTCACCGGAG 62.814 72.222 9.46 0.00 44.33 4.63
88 89 4.966787 GCGTGGGGGCAGGTCAAA 62.967 66.667 0.00 0.00 0.00 2.69
89 90 2.203422 CGTGGGGGCAGGTCAAAA 60.203 61.111 0.00 0.00 0.00 2.44
90 91 2.268076 CGTGGGGGCAGGTCAAAAG 61.268 63.158 0.00 0.00 0.00 2.27
91 92 1.908299 GTGGGGGCAGGTCAAAAGG 60.908 63.158 0.00 0.00 0.00 3.11
92 93 2.997315 GGGGGCAGGTCAAAAGGC 60.997 66.667 0.00 0.00 0.00 4.35
93 94 2.118294 GGGGCAGGTCAAAAGGCT 59.882 61.111 0.00 0.00 0.00 4.58
94 95 2.278330 GGGGCAGGTCAAAAGGCTG 61.278 63.158 0.00 0.00 0.00 4.85
95 96 2.278330 GGGCAGGTCAAAAGGCTGG 61.278 63.158 0.00 0.00 0.00 4.85
96 97 1.228552 GGCAGGTCAAAAGGCTGGA 60.229 57.895 0.00 0.00 0.00 3.86
97 98 1.246737 GGCAGGTCAAAAGGCTGGAG 61.247 60.000 0.00 0.00 0.00 3.86
98 99 0.250901 GCAGGTCAAAAGGCTGGAGA 60.251 55.000 0.00 0.00 0.00 3.71
99 100 1.819305 GCAGGTCAAAAGGCTGGAGAA 60.819 52.381 0.00 0.00 0.00 2.87
100 101 2.586425 CAGGTCAAAAGGCTGGAGAAA 58.414 47.619 0.00 0.00 0.00 2.52
101 102 3.160269 CAGGTCAAAAGGCTGGAGAAAT 58.840 45.455 0.00 0.00 0.00 2.17
102 103 3.057033 CAGGTCAAAAGGCTGGAGAAATG 60.057 47.826 0.00 0.00 0.00 2.32
103 104 2.893489 GGTCAAAAGGCTGGAGAAATGT 59.107 45.455 0.00 0.00 0.00 2.71
104 105 3.305608 GGTCAAAAGGCTGGAGAAATGTG 60.306 47.826 0.00 0.00 0.00 3.21
105 106 2.892852 TCAAAAGGCTGGAGAAATGTGG 59.107 45.455 0.00 0.00 0.00 4.17
106 107 2.892852 CAAAAGGCTGGAGAAATGTGGA 59.107 45.455 0.00 0.00 0.00 4.02
107 108 2.503895 AAGGCTGGAGAAATGTGGAG 57.496 50.000 0.00 0.00 0.00 3.86
108 109 0.622665 AGGCTGGAGAAATGTGGAGG 59.377 55.000 0.00 0.00 0.00 4.30
109 110 0.329596 GGCTGGAGAAATGTGGAGGT 59.670 55.000 0.00 0.00 0.00 3.85
110 111 1.559682 GGCTGGAGAAATGTGGAGGTA 59.440 52.381 0.00 0.00 0.00 3.08
111 112 2.420687 GGCTGGAGAAATGTGGAGGTAG 60.421 54.545 0.00 0.00 0.00 3.18
112 113 2.420687 GCTGGAGAAATGTGGAGGTAGG 60.421 54.545 0.00 0.00 0.00 3.18
113 114 2.840651 CTGGAGAAATGTGGAGGTAGGT 59.159 50.000 0.00 0.00 0.00 3.08
114 115 4.030913 CTGGAGAAATGTGGAGGTAGGTA 58.969 47.826 0.00 0.00 0.00 3.08
115 116 4.030913 TGGAGAAATGTGGAGGTAGGTAG 58.969 47.826 0.00 0.00 0.00 3.18
116 117 4.264668 TGGAGAAATGTGGAGGTAGGTAGA 60.265 45.833 0.00 0.00 0.00 2.59
117 118 4.902448 GGAGAAATGTGGAGGTAGGTAGAT 59.098 45.833 0.00 0.00 0.00 1.98
118 119 5.221541 GGAGAAATGTGGAGGTAGGTAGATG 60.222 48.000 0.00 0.00 0.00 2.90
119 120 4.101741 AGAAATGTGGAGGTAGGTAGATGC 59.898 45.833 0.00 0.00 0.00 3.91
120 121 2.543037 TGTGGAGGTAGGTAGATGCA 57.457 50.000 0.00 0.00 0.00 3.96
121 122 2.388735 TGTGGAGGTAGGTAGATGCAG 58.611 52.381 0.00 0.00 0.00 4.41
122 123 2.024369 TGTGGAGGTAGGTAGATGCAGA 60.024 50.000 0.00 0.00 0.00 4.26
123 124 2.362717 GTGGAGGTAGGTAGATGCAGAC 59.637 54.545 0.00 0.00 0.00 3.51
124 125 2.245028 TGGAGGTAGGTAGATGCAGACT 59.755 50.000 0.00 0.00 0.00 3.24
125 126 2.888414 GGAGGTAGGTAGATGCAGACTC 59.112 54.545 0.00 0.00 0.00 3.36
126 127 3.435890 GGAGGTAGGTAGATGCAGACTCT 60.436 52.174 0.00 0.00 0.00 3.24
127 128 3.818773 GAGGTAGGTAGATGCAGACTCTC 59.181 52.174 0.00 0.00 0.00 3.20
128 129 2.550606 GGTAGGTAGATGCAGACTCTCG 59.449 54.545 0.00 0.00 0.00 4.04
129 130 2.428544 AGGTAGATGCAGACTCTCGT 57.571 50.000 0.00 0.00 0.00 4.18
130 131 2.294074 AGGTAGATGCAGACTCTCGTC 58.706 52.381 0.00 0.00 40.54 4.20
131 132 2.017782 GGTAGATGCAGACTCTCGTCA 58.982 52.381 0.00 0.00 42.73 4.35
132 133 2.032799 GGTAGATGCAGACTCTCGTCAG 59.967 54.545 0.00 0.00 42.73 3.51
133 134 2.121291 AGATGCAGACTCTCGTCAGA 57.879 50.000 0.00 0.00 42.73 3.27
141 142 3.114558 CTCTCGTCAGAGCAACACC 57.885 57.895 0.00 0.00 44.02 4.16
142 143 0.730834 CTCTCGTCAGAGCAACACCG 60.731 60.000 0.00 0.00 44.02 4.94
143 144 1.734477 CTCGTCAGAGCAACACCGG 60.734 63.158 0.00 0.00 37.73 5.28
144 145 2.738521 CGTCAGAGCAACACCGGG 60.739 66.667 6.32 0.00 0.00 5.73
145 146 2.358737 GTCAGAGCAACACCGGGG 60.359 66.667 0.00 0.00 0.00 5.73
146 147 4.329545 TCAGAGCAACACCGGGGC 62.330 66.667 1.73 1.87 0.00 5.80
147 148 4.641645 CAGAGCAACACCGGGGCA 62.642 66.667 1.73 0.00 0.00 5.36
148 149 4.335647 AGAGCAACACCGGGGCAG 62.336 66.667 1.73 0.00 0.00 4.85
162 163 4.154347 GCAGGTGGAGGCGAGGAG 62.154 72.222 0.00 0.00 0.00 3.69
163 164 3.465403 CAGGTGGAGGCGAGGAGG 61.465 72.222 0.00 0.00 0.00 4.30
164 165 3.999285 AGGTGGAGGCGAGGAGGT 61.999 66.667 0.00 0.00 0.00 3.85
165 166 3.462678 GGTGGAGGCGAGGAGGTC 61.463 72.222 0.00 0.00 0.00 3.85
173 174 4.200283 CGAGGAGGTCGCCAGAGC 62.200 72.222 0.00 0.00 43.03 4.09
174 175 3.071206 GAGGAGGTCGCCAGAGCA 61.071 66.667 0.57 0.00 46.62 4.26
175 176 3.073735 AGGAGGTCGCCAGAGCAG 61.074 66.667 0.57 0.00 46.62 4.24
176 177 3.386237 GGAGGTCGCCAGAGCAGT 61.386 66.667 0.57 0.00 46.62 4.40
177 178 2.125753 GAGGTCGCCAGAGCAGTG 60.126 66.667 0.57 0.00 46.62 3.66
178 179 4.385405 AGGTCGCCAGAGCAGTGC 62.385 66.667 7.13 7.13 46.62 4.40
179 180 4.687215 GGTCGCCAGAGCAGTGCA 62.687 66.667 19.20 0.00 43.86 4.57
180 181 3.117171 GTCGCCAGAGCAGTGCAG 61.117 66.667 19.20 6.57 39.83 4.41
181 182 4.383861 TCGCCAGAGCAGTGCAGG 62.384 66.667 19.20 16.59 39.83 4.85
185 186 4.383861 CAGAGCAGTGCAGGGCGA 62.384 66.667 19.20 0.00 34.54 5.54
186 187 4.079850 AGAGCAGTGCAGGGCGAG 62.080 66.667 19.20 0.00 34.54 5.03
192 193 4.101448 GTGCAGGGCGAGGTGGAT 62.101 66.667 0.00 0.00 0.00 3.41
193 194 4.100084 TGCAGGGCGAGGTGGATG 62.100 66.667 0.00 0.00 0.00 3.51
194 195 4.101448 GCAGGGCGAGGTGGATGT 62.101 66.667 0.00 0.00 0.00 3.06
195 196 2.124983 CAGGGCGAGGTGGATGTG 60.125 66.667 0.00 0.00 0.00 3.21
196 197 3.402681 AGGGCGAGGTGGATGTGG 61.403 66.667 0.00 0.00 0.00 4.17
201 202 4.101448 GAGGTGGATGTGGCCGCT 62.101 66.667 18.96 2.56 38.49 5.52
202 203 4.101448 AGGTGGATGTGGCCGCTC 62.101 66.667 18.96 12.10 38.49 5.03
204 205 4.760047 GTGGATGTGGCCGCTCGT 62.760 66.667 18.96 3.28 35.56 4.18
205 206 4.451150 TGGATGTGGCCGCTCGTC 62.451 66.667 18.96 12.50 0.00 4.20
215 216 2.395690 CGCTCGTCGGAAATGCAC 59.604 61.111 0.00 0.00 33.78 4.57
216 217 2.395690 GCTCGTCGGAAATGCACG 59.604 61.111 0.00 0.00 34.78 5.34
217 218 3.081133 CTCGTCGGAAATGCACGG 58.919 61.111 0.00 0.00 34.24 4.94
218 219 2.433491 TCGTCGGAAATGCACGGG 60.433 61.111 0.00 0.00 34.24 5.28
219 220 3.496131 CGTCGGAAATGCACGGGG 61.496 66.667 0.00 0.00 0.00 5.73
220 221 3.810896 GTCGGAAATGCACGGGGC 61.811 66.667 0.00 0.00 45.13 5.80
229 230 4.864334 GCACGGGGCAGATGGAGG 62.864 72.222 0.00 0.00 43.97 4.30
230 231 4.864334 CACGGGGCAGATGGAGGC 62.864 72.222 0.00 0.00 0.00 4.70
234 235 4.554036 GGGCAGATGGAGGCGGAC 62.554 72.222 0.00 0.00 0.00 4.79
235 236 4.899239 GGCAGATGGAGGCGGACG 62.899 72.222 0.00 0.00 0.00 4.79
236 237 4.148825 GCAGATGGAGGCGGACGT 62.149 66.667 0.00 0.00 0.00 4.34
237 238 2.105128 CAGATGGAGGCGGACGTC 59.895 66.667 7.13 7.13 0.00 4.34
238 239 3.518998 AGATGGAGGCGGACGTCG 61.519 66.667 9.92 6.26 42.76 5.12
239 240 3.823330 GATGGAGGCGGACGTCGT 61.823 66.667 9.92 0.00 41.72 4.34
240 241 3.753070 GATGGAGGCGGACGTCGTC 62.753 68.421 17.16 17.16 45.07 4.20
247 248 2.870161 CGGACGTCGTCGAAGCAG 60.870 66.667 18.61 2.85 40.62 4.24
248 249 2.559840 GGACGTCGTCGAAGCAGA 59.440 61.111 18.61 0.00 40.62 4.26
249 250 1.512310 GGACGTCGTCGAAGCAGAG 60.512 63.158 18.61 0.00 40.62 3.35
250 251 2.126812 ACGTCGTCGAAGCAGAGC 60.127 61.111 9.47 0.00 40.62 4.09
251 252 2.126850 CGTCGTCGAAGCAGAGCA 60.127 61.111 0.00 0.00 39.71 4.26
252 253 2.148982 CGTCGTCGAAGCAGAGCAG 61.149 63.158 0.00 0.00 39.71 4.24
253 254 1.803519 GTCGTCGAAGCAGAGCAGG 60.804 63.158 0.00 0.00 0.00 4.85
254 255 2.259818 CGTCGAAGCAGAGCAGGT 59.740 61.111 0.00 0.00 0.00 4.00
255 256 1.803519 CGTCGAAGCAGAGCAGGTC 60.804 63.158 0.00 0.00 0.00 3.85
256 257 1.803519 GTCGAAGCAGAGCAGGTCG 60.804 63.158 0.00 0.00 33.30 4.79
257 258 2.259818 CGAAGCAGAGCAGGTCGT 59.740 61.111 0.00 0.00 0.00 4.34
258 259 2.091112 CGAAGCAGAGCAGGTCGTG 61.091 63.158 0.00 0.00 0.00 4.35
259 260 1.005630 GAAGCAGAGCAGGTCGTGT 60.006 57.895 0.00 0.00 0.00 4.49
260 261 0.601311 GAAGCAGAGCAGGTCGTGTT 60.601 55.000 0.00 0.00 0.00 3.32
261 262 0.179045 AAGCAGAGCAGGTCGTGTTT 60.179 50.000 0.00 0.00 0.00 2.83
262 263 0.882042 AGCAGAGCAGGTCGTGTTTG 60.882 55.000 0.00 0.00 0.00 2.93
263 264 0.880278 GCAGAGCAGGTCGTGTTTGA 60.880 55.000 0.00 0.00 0.00 2.69
264 265 1.800805 CAGAGCAGGTCGTGTTTGAT 58.199 50.000 0.00 0.00 0.00 2.57
265 266 2.146342 CAGAGCAGGTCGTGTTTGATT 58.854 47.619 0.00 0.00 0.00 2.57
266 267 2.549754 CAGAGCAGGTCGTGTTTGATTT 59.450 45.455 0.00 0.00 0.00 2.17
267 268 2.549754 AGAGCAGGTCGTGTTTGATTTG 59.450 45.455 0.00 0.00 0.00 2.32
268 269 1.608590 AGCAGGTCGTGTTTGATTTGG 59.391 47.619 0.00 0.00 0.00 3.28
269 270 1.335872 GCAGGTCGTGTTTGATTTGGG 60.336 52.381 0.00 0.00 0.00 4.12
270 271 1.269448 CAGGTCGTGTTTGATTTGGGG 59.731 52.381 0.00 0.00 0.00 4.96
271 272 0.601057 GGTCGTGTTTGATTTGGGGG 59.399 55.000 0.00 0.00 0.00 5.40
272 273 1.611519 GTCGTGTTTGATTTGGGGGA 58.388 50.000 0.00 0.00 0.00 4.81
273 274 1.957877 GTCGTGTTTGATTTGGGGGAA 59.042 47.619 0.00 0.00 0.00 3.97
274 275 2.362717 GTCGTGTTTGATTTGGGGGAAA 59.637 45.455 0.00 0.00 0.00 3.13
275 276 3.031736 TCGTGTTTGATTTGGGGGAAAA 58.968 40.909 0.00 0.00 0.00 2.29
276 277 3.127589 CGTGTTTGATTTGGGGGAAAAC 58.872 45.455 0.00 0.00 0.00 2.43
277 278 3.181470 CGTGTTTGATTTGGGGGAAAACT 60.181 43.478 0.00 0.00 33.07 2.66
278 279 4.126437 GTGTTTGATTTGGGGGAAAACTG 58.874 43.478 0.00 0.00 33.07 3.16
279 280 4.033709 TGTTTGATTTGGGGGAAAACTGA 58.966 39.130 0.00 0.00 33.07 3.41
280 281 4.100808 TGTTTGATTTGGGGGAAAACTGAG 59.899 41.667 0.00 0.00 33.07 3.35
281 282 3.611025 TGATTTGGGGGAAAACTGAGT 57.389 42.857 0.00 0.00 0.00 3.41
282 283 3.230134 TGATTTGGGGGAAAACTGAGTG 58.770 45.455 0.00 0.00 0.00 3.51
283 284 3.117322 TGATTTGGGGGAAAACTGAGTGA 60.117 43.478 0.00 0.00 0.00 3.41
284 285 3.390175 TTTGGGGGAAAACTGAGTGAA 57.610 42.857 0.00 0.00 0.00 3.18
285 286 3.390175 TTGGGGGAAAACTGAGTGAAA 57.610 42.857 0.00 0.00 0.00 2.69
286 287 2.944129 TGGGGGAAAACTGAGTGAAAG 58.056 47.619 0.00 0.00 0.00 2.62
287 288 2.512056 TGGGGGAAAACTGAGTGAAAGA 59.488 45.455 0.00 0.00 0.00 2.52
288 289 3.149981 GGGGGAAAACTGAGTGAAAGAG 58.850 50.000 0.00 0.00 0.00 2.85
289 290 3.181443 GGGGGAAAACTGAGTGAAAGAGA 60.181 47.826 0.00 0.00 0.00 3.10
290 291 4.507512 GGGGGAAAACTGAGTGAAAGAGAT 60.508 45.833 0.00 0.00 0.00 2.75
291 292 5.280521 GGGGGAAAACTGAGTGAAAGAGATA 60.281 44.000 0.00 0.00 0.00 1.98
292 293 6.238648 GGGGAAAACTGAGTGAAAGAGATAA 58.761 40.000 0.00 0.00 0.00 1.75
293 294 6.372937 GGGGAAAACTGAGTGAAAGAGATAAG 59.627 42.308 0.00 0.00 0.00 1.73
294 295 6.372937 GGGAAAACTGAGTGAAAGAGATAAGG 59.627 42.308 0.00 0.00 0.00 2.69
295 296 7.162082 GGAAAACTGAGTGAAAGAGATAAGGA 58.838 38.462 0.00 0.00 0.00 3.36
296 297 7.661847 GGAAAACTGAGTGAAAGAGATAAGGAA 59.338 37.037 0.00 0.00 0.00 3.36
297 298 8.614469 AAAACTGAGTGAAAGAGATAAGGAAG 57.386 34.615 0.00 0.00 0.00 3.46
298 299 7.546250 AACTGAGTGAAAGAGATAAGGAAGA 57.454 36.000 0.00 0.00 0.00 2.87
299 300 7.546250 ACTGAGTGAAAGAGATAAGGAAGAA 57.454 36.000 0.00 0.00 0.00 2.52
300 301 7.610865 ACTGAGTGAAAGAGATAAGGAAGAAG 58.389 38.462 0.00 0.00 0.00 2.85
301 302 6.940739 TGAGTGAAAGAGATAAGGAAGAAGG 58.059 40.000 0.00 0.00 0.00 3.46
302 303 6.726299 TGAGTGAAAGAGATAAGGAAGAAGGA 59.274 38.462 0.00 0.00 0.00 3.36
303 304 7.235606 TGAGTGAAAGAGATAAGGAAGAAGGAA 59.764 37.037 0.00 0.00 0.00 3.36
304 305 7.619965 AGTGAAAGAGATAAGGAAGAAGGAAG 58.380 38.462 0.00 0.00 0.00 3.46
305 306 7.456269 AGTGAAAGAGATAAGGAAGAAGGAAGA 59.544 37.037 0.00 0.00 0.00 2.87
306 307 8.264347 GTGAAAGAGATAAGGAAGAAGGAAGAT 58.736 37.037 0.00 0.00 0.00 2.40
307 308 8.263640 TGAAAGAGATAAGGAAGAAGGAAGATG 58.736 37.037 0.00 0.00 0.00 2.90
308 309 6.745794 AGAGATAAGGAAGAAGGAAGATGG 57.254 41.667 0.00 0.00 0.00 3.51
309 310 6.448202 AGAGATAAGGAAGAAGGAAGATGGA 58.552 40.000 0.00 0.00 0.00 3.41
310 311 7.081661 AGAGATAAGGAAGAAGGAAGATGGAT 58.918 38.462 0.00 0.00 0.00 3.41
311 312 7.016465 AGAGATAAGGAAGAAGGAAGATGGATG 59.984 40.741 0.00 0.00 0.00 3.51
312 313 3.574354 AGGAAGAAGGAAGATGGATGC 57.426 47.619 0.00 0.00 0.00 3.91
313 314 2.158842 AGGAAGAAGGAAGATGGATGCG 60.159 50.000 0.00 0.00 0.00 4.73
314 315 2.216898 GAAGAAGGAAGATGGATGCGG 58.783 52.381 0.00 0.00 0.00 5.69
315 316 1.207791 AGAAGGAAGATGGATGCGGT 58.792 50.000 0.00 0.00 0.00 5.68
316 317 1.561542 AGAAGGAAGATGGATGCGGTT 59.438 47.619 0.00 0.00 0.00 4.44
317 318 2.025887 AGAAGGAAGATGGATGCGGTTT 60.026 45.455 0.00 0.00 0.00 3.27
318 319 1.755179 AGGAAGATGGATGCGGTTTG 58.245 50.000 0.00 0.00 0.00 2.93
319 320 0.101219 GGAAGATGGATGCGGTTTGC 59.899 55.000 0.00 0.00 46.70 3.68
328 329 3.694538 GCGGTTTGCAAGGCCCAT 61.695 61.111 14.11 0.00 45.45 4.00
329 330 2.347322 GCGGTTTGCAAGGCCCATA 61.347 57.895 14.11 0.00 45.45 2.74
348 349 1.770294 AAGGCCTTGTTTGGTTTCGA 58.230 45.000 19.73 0.00 0.00 3.71
417 418 0.891904 GCTAAACTTGACCCGGGCAA 60.892 55.000 24.08 23.60 0.00 4.52
445 446 0.758123 CACATTTGGTTGTGCCCCTT 59.242 50.000 0.00 0.00 40.45 3.95
581 584 3.710722 CCTGGCGACCTCCTGCTT 61.711 66.667 0.00 0.00 0.00 3.91
588 591 0.108138 CGACCTCCTGCTTTACCTGG 60.108 60.000 0.00 0.00 0.00 4.45
607 610 2.920384 GATCTCCTCCGCCTCCCC 60.920 72.222 0.00 0.00 0.00 4.81
632 639 1.690633 CAGGCCCCTCTGCTTCCTA 60.691 63.158 0.00 0.00 0.00 2.94
639 646 1.677637 CCTCTGCTTCCTACGACCCC 61.678 65.000 0.00 0.00 0.00 4.95
663 671 5.874810 CCCTCATTACGAGAGATGTTTGAAA 59.125 40.000 0.00 0.00 45.45 2.69
730 738 0.178964 TTCCTCCCCTTGTTGCCAAG 60.179 55.000 0.00 0.00 46.33 3.61
746 758 2.487265 GCCAAGACAGAAAGTTCTCCCA 60.487 50.000 0.00 0.00 34.74 4.37
785 797 3.120338 CGTATGTGTTCGTGAAATTGCCT 60.120 43.478 0.00 0.00 0.00 4.75
831 843 8.395605 TGGATTTTCCTTACCTTACTACCAAAT 58.604 33.333 0.00 0.00 37.46 2.32
839 851 8.488668 CCTTACCTTACTACCAAATAAAGCCTA 58.511 37.037 0.00 0.00 0.00 3.93
840 852 9.895138 CTTACCTTACTACCAAATAAAGCCTAA 57.105 33.333 0.00 0.00 0.00 2.69
843 855 9.185680 ACCTTACTACCAAATAAAGCCTAAATG 57.814 33.333 0.00 0.00 0.00 2.32
844 856 9.403583 CCTTACTACCAAATAAAGCCTAAATGA 57.596 33.333 0.00 0.00 0.00 2.57
857 869 3.444703 CTAAATGAGGAGGAGTGGACG 57.555 52.381 0.00 0.00 0.00 4.79
858 870 1.645710 AAATGAGGAGGAGTGGACGT 58.354 50.000 0.00 0.00 0.00 4.34
859 871 0.898320 AATGAGGAGGAGTGGACGTG 59.102 55.000 0.00 0.00 0.00 4.49
860 872 0.972983 ATGAGGAGGAGTGGACGTGG 60.973 60.000 0.00 0.00 0.00 4.94
861 873 2.997897 AGGAGGAGTGGACGTGGC 60.998 66.667 0.00 0.00 0.00 5.01
862 874 2.997897 GGAGGAGTGGACGTGGCT 60.998 66.667 0.00 0.00 0.00 4.75
863 875 2.262915 GAGGAGTGGACGTGGCTG 59.737 66.667 0.00 0.00 0.00 4.85
864 876 3.302347 GAGGAGTGGACGTGGCTGG 62.302 68.421 0.00 0.00 0.00 4.85
866 878 4.008933 GAGTGGACGTGGCTGGCT 62.009 66.667 0.00 0.00 0.00 4.75
867 879 3.941657 GAGTGGACGTGGCTGGCTC 62.942 68.421 0.00 0.00 0.00 4.70
868 880 4.314440 GTGGACGTGGCTGGCTCA 62.314 66.667 0.00 0.00 0.00 4.26
869 881 3.321648 TGGACGTGGCTGGCTCAT 61.322 61.111 0.00 0.00 0.00 2.90
870 882 1.987306 TGGACGTGGCTGGCTCATA 60.987 57.895 0.00 0.00 0.00 2.15
871 883 1.227380 GGACGTGGCTGGCTCATAG 60.227 63.158 0.00 0.00 0.00 2.23
872 884 1.227380 GACGTGGCTGGCTCATAGG 60.227 63.158 0.00 0.00 0.00 2.57
873 885 1.676678 GACGTGGCTGGCTCATAGGA 61.677 60.000 0.00 0.00 0.00 2.94
874 886 1.050988 ACGTGGCTGGCTCATAGGAT 61.051 55.000 2.00 0.00 0.00 3.24
875 887 0.320247 CGTGGCTGGCTCATAGGATC 60.320 60.000 2.00 0.00 0.00 3.36
876 888 0.036022 GTGGCTGGCTCATAGGATCC 59.964 60.000 2.48 2.48 0.00 3.36
877 889 0.400381 TGGCTGGCTCATAGGATCCA 60.400 55.000 15.82 0.00 36.99 3.41
878 890 0.767375 GGCTGGCTCATAGGATCCAA 59.233 55.000 15.82 0.00 38.76 3.53
879 891 1.544314 GGCTGGCTCATAGGATCCAAC 60.544 57.143 15.82 0.00 38.76 3.77
880 892 1.875576 GCTGGCTCATAGGATCCAACG 60.876 57.143 15.82 0.82 38.76 4.10
881 893 1.414181 CTGGCTCATAGGATCCAACGT 59.586 52.381 15.82 0.00 38.76 3.99
882 894 1.138859 TGGCTCATAGGATCCAACGTG 59.861 52.381 15.82 6.92 36.42 4.49
883 895 1.541233 GGCTCATAGGATCCAACGTGG 60.541 57.143 15.82 0.44 39.43 4.94
884 896 1.871080 CTCATAGGATCCAACGTGGC 58.129 55.000 15.82 0.00 37.47 5.01
885 897 0.104120 TCATAGGATCCAACGTGGCG 59.896 55.000 15.82 0.00 37.47 5.69
886 898 0.104120 CATAGGATCCAACGTGGCGA 59.896 55.000 15.82 0.00 37.47 5.54
887 899 0.828022 ATAGGATCCAACGTGGCGAA 59.172 50.000 15.82 0.00 37.47 4.70
888 900 0.108520 TAGGATCCAACGTGGCGAAC 60.109 55.000 15.82 0.00 37.47 3.95
889 901 1.669760 GGATCCAACGTGGCGAACA 60.670 57.895 6.95 0.00 37.47 3.18
890 902 1.024579 GGATCCAACGTGGCGAACAT 61.025 55.000 6.95 0.00 37.47 2.71
891 903 0.096976 GATCCAACGTGGCGAACATG 59.903 55.000 0.00 0.00 41.98 3.21
892 904 0.321210 ATCCAACGTGGCGAACATGA 60.321 50.000 0.00 0.00 39.46 3.07
893 905 0.533085 TCCAACGTGGCGAACATGAA 60.533 50.000 0.00 0.00 39.46 2.57
894 906 0.385473 CCAACGTGGCGAACATGAAC 60.385 55.000 0.00 0.00 39.46 3.18
895 907 0.721155 CAACGTGGCGAACATGAACG 60.721 55.000 0.00 5.80 39.46 3.95
896 908 1.593209 ACGTGGCGAACATGAACGT 60.593 52.632 0.00 2.84 42.20 3.99
897 909 1.155424 ACGTGGCGAACATGAACGTT 61.155 50.000 0.00 0.00 44.38 3.99
898 910 0.041663 CGTGGCGAACATGAACGTTT 60.042 50.000 0.46 0.00 38.41 3.60
899 911 1.595976 CGTGGCGAACATGAACGTTTT 60.596 47.619 0.46 0.00 38.41 2.43
900 912 2.041244 GTGGCGAACATGAACGTTTTC 58.959 47.619 0.46 0.91 0.00 2.29
901 913 1.002251 TGGCGAACATGAACGTTTTCC 60.002 47.619 0.46 2.19 0.00 3.13
916 928 6.457851 ACGTTTTCCTTTCGAATACTACAC 57.542 37.500 0.00 0.00 32.12 2.90
923 935 7.801547 TCCTTTCGAATACTACACTTTTACG 57.198 36.000 0.00 0.00 0.00 3.18
935 947 8.592105 ACTACACTTTTACGTATACTTTGCAA 57.408 30.769 0.00 0.00 0.00 4.08
950 962 1.896220 TGCAACCAAACAGAGCCTAG 58.104 50.000 0.00 0.00 0.00 3.02
964 977 3.046374 GAGCCTAGGGATAAGGTTTCCA 58.954 50.000 11.72 0.00 36.43 3.53
1163 1176 1.841450 GAGACCTTTACATCCGCGAG 58.159 55.000 8.23 0.00 0.00 5.03
1398 1411 3.147595 CACGGAGGAGGCGGATGA 61.148 66.667 0.00 0.00 0.00 2.92
1401 1414 2.721167 CGGAGGAGGCGGATGACAA 61.721 63.158 0.00 0.00 0.00 3.18
1405 1418 0.325296 AGGAGGCGGATGACAAGGTA 60.325 55.000 0.00 0.00 0.00 3.08
1432 1445 2.602878 GATTTTGACGTGTCGAGCCTA 58.397 47.619 0.00 0.00 0.00 3.93
1590 1614 3.376935 CTCTCGTCCTGCGCCCATT 62.377 63.158 4.18 0.00 41.07 3.16
1616 1640 3.055385 TGTTACCACTTATCAGCCCAGAC 60.055 47.826 0.00 0.00 0.00 3.51
1619 1643 2.290323 ACCACTTATCAGCCCAGACAAC 60.290 50.000 0.00 0.00 0.00 3.32
1621 1645 3.411446 CACTTATCAGCCCAGACAACAA 58.589 45.455 0.00 0.00 0.00 2.83
1637 1661 6.416750 CAGACAACAAATTACTTTTTCGGGAC 59.583 38.462 0.00 0.00 0.00 4.46
1660 1684 1.134560 ACGACCGAGAGATTTGGTAGC 59.865 52.381 0.00 0.00 44.09 3.58
1661 1685 1.536284 CGACCGAGAGATTTGGTAGCC 60.536 57.143 0.00 0.00 44.09 3.93
1663 1687 2.957006 GACCGAGAGATTTGGTAGCCTA 59.043 50.000 0.00 0.00 44.09 3.93
1664 1688 2.694109 ACCGAGAGATTTGGTAGCCTAC 59.306 50.000 0.00 0.00 42.13 3.18
1724 1748 5.708948 TCTTGCTTGGAATTTAAATGGTCG 58.291 37.500 0.39 0.00 0.00 4.79
1740 1764 2.684374 TGGTCGCAGAAAATGATCATGG 59.316 45.455 9.46 0.00 39.69 3.66
1752 1776 0.822121 GATCATGGCCTCTGCATGCA 60.822 55.000 21.29 21.29 40.13 3.96
1886 1910 0.462047 GTGGAGCCATAAGACGTGGG 60.462 60.000 0.00 0.00 37.22 4.61
2036 2060 3.544607 ATCTCCATCGCCAGCGCT 61.545 61.111 2.64 2.64 39.59 5.92
2054 2078 1.927895 CTACCTGATCGTGCCTGTTC 58.072 55.000 0.00 0.00 0.00 3.18
2211 2235 7.798486 CATCTAGATGTGCCGTAAGTATTAC 57.202 40.000 22.42 0.00 39.70 1.89
2212 2236 7.368059 CATCTAGATGTGCCGTAAGTATTACA 58.632 38.462 22.42 0.00 41.35 2.41
2213 2237 7.326305 CATCTAGATGTGCCGTAAGTATTACAC 59.674 40.741 22.42 0.00 41.35 2.90
2230 2254 9.642343 AGTATTACACATCTAAGTCCTATGTCA 57.358 33.333 0.00 0.00 31.60 3.58
2233 2257 9.770097 ATTACACATCTAAGTCCTATGTCATTG 57.230 33.333 0.00 0.00 31.60 2.82
2234 2258 7.423844 ACACATCTAAGTCCTATGTCATTGA 57.576 36.000 0.00 0.00 31.60 2.57
2235 2259 8.027524 ACACATCTAAGTCCTATGTCATTGAT 57.972 34.615 0.00 0.00 31.60 2.57
2236 2260 8.147058 ACACATCTAAGTCCTATGTCATTGATC 58.853 37.037 0.00 0.00 31.60 2.92
2237 2261 8.366401 CACATCTAAGTCCTATGTCATTGATCT 58.634 37.037 0.00 0.00 31.60 2.75
2238 2262 8.932610 ACATCTAAGTCCTATGTCATTGATCTT 58.067 33.333 0.00 0.82 0.00 2.40
2242 2266 7.976135 AAGTCCTATGTCATTGATCTTATGC 57.024 36.000 0.00 0.00 0.00 3.14
2243 2267 6.162079 AGTCCTATGTCATTGATCTTATGCG 58.838 40.000 0.00 0.00 0.00 4.73
2244 2268 5.349817 GTCCTATGTCATTGATCTTATGCGG 59.650 44.000 0.00 0.00 0.00 5.69
2245 2269 5.245977 TCCTATGTCATTGATCTTATGCGGA 59.754 40.000 0.00 0.00 0.00 5.54
2246 2270 5.579904 CCTATGTCATTGATCTTATGCGGAG 59.420 44.000 0.00 0.00 0.00 4.63
2247 2271 4.670896 TGTCATTGATCTTATGCGGAGA 57.329 40.909 0.00 0.00 0.00 3.71
2248 2272 5.219343 TGTCATTGATCTTATGCGGAGAT 57.781 39.130 0.00 0.00 36.60 2.75
2249 2273 5.614308 TGTCATTGATCTTATGCGGAGATT 58.386 37.500 0.00 0.00 34.13 2.40
2250 2274 6.057533 TGTCATTGATCTTATGCGGAGATTT 58.942 36.000 0.00 0.00 34.13 2.17
2251 2275 6.017687 TGTCATTGATCTTATGCGGAGATTTG 60.018 38.462 0.00 0.00 34.13 2.32
2252 2276 6.017605 GTCATTGATCTTATGCGGAGATTTGT 60.018 38.462 0.00 0.00 34.13 2.83
2253 2277 5.739752 TTGATCTTATGCGGAGATTTGTG 57.260 39.130 0.00 0.00 34.13 3.33
2254 2278 4.769688 TGATCTTATGCGGAGATTTGTGT 58.230 39.130 0.00 0.00 34.13 3.72
2255 2279 4.571984 TGATCTTATGCGGAGATTTGTGTG 59.428 41.667 0.00 0.00 34.13 3.82
2256 2280 3.270027 TCTTATGCGGAGATTTGTGTGG 58.730 45.455 0.00 0.00 0.00 4.17
2257 2281 3.055458 TCTTATGCGGAGATTTGTGTGGA 60.055 43.478 0.00 0.00 0.00 4.02
2258 2282 2.425143 ATGCGGAGATTTGTGTGGAT 57.575 45.000 0.00 0.00 0.00 3.41
2259 2283 3.558931 ATGCGGAGATTTGTGTGGATA 57.441 42.857 0.00 0.00 0.00 2.59
2260 2284 3.558931 TGCGGAGATTTGTGTGGATAT 57.441 42.857 0.00 0.00 0.00 1.63
2261 2285 3.884895 TGCGGAGATTTGTGTGGATATT 58.115 40.909 0.00 0.00 0.00 1.28
2262 2286 4.269183 TGCGGAGATTTGTGTGGATATTT 58.731 39.130 0.00 0.00 0.00 1.40
2263 2287 4.704540 TGCGGAGATTTGTGTGGATATTTT 59.295 37.500 0.00 0.00 0.00 1.82
2264 2288 5.163663 TGCGGAGATTTGTGTGGATATTTTC 60.164 40.000 0.00 0.00 0.00 2.29
2265 2289 5.066505 GCGGAGATTTGTGTGGATATTTTCT 59.933 40.000 0.00 0.00 0.00 2.52
2266 2290 6.404734 GCGGAGATTTGTGTGGATATTTTCTT 60.405 38.462 0.00 0.00 0.00 2.52
2267 2291 7.538575 CGGAGATTTGTGTGGATATTTTCTTT 58.461 34.615 0.00 0.00 0.00 2.52
2268 2292 8.028938 CGGAGATTTGTGTGGATATTTTCTTTT 58.971 33.333 0.00 0.00 0.00 2.27
2269 2293 9.710900 GGAGATTTGTGTGGATATTTTCTTTTT 57.289 29.630 0.00 0.00 0.00 1.94
2294 2318 8.519492 TTCTTTTCTTTTTCATTCTTATGCGG 57.481 30.769 0.00 0.00 0.00 5.69
2295 2319 7.881142 TCTTTTCTTTTTCATTCTTATGCGGA 58.119 30.769 0.00 0.00 0.00 5.54
2296 2320 8.023128 TCTTTTCTTTTTCATTCTTATGCGGAG 58.977 33.333 0.00 0.00 0.00 4.63
2297 2321 7.447374 TTTCTTTTTCATTCTTATGCGGAGA 57.553 32.000 0.00 0.00 0.00 3.71
2298 2322 7.630242 TTCTTTTTCATTCTTATGCGGAGAT 57.370 32.000 0.00 0.00 0.00 2.75
2299 2323 7.630242 TCTTTTTCATTCTTATGCGGAGATT 57.370 32.000 0.00 0.00 0.00 2.40
2300 2324 8.055279 TCTTTTTCATTCTTATGCGGAGATTT 57.945 30.769 0.00 0.00 0.00 2.17
2301 2325 7.970061 TCTTTTTCATTCTTATGCGGAGATTTG 59.030 33.333 0.00 0.00 0.00 2.32
2302 2326 6.757897 TTTCATTCTTATGCGGAGATTTGT 57.242 33.333 0.00 0.00 0.00 2.83
2303 2327 5.739752 TCATTCTTATGCGGAGATTTGTG 57.260 39.130 0.00 0.00 0.00 3.33
2304 2328 5.185454 TCATTCTTATGCGGAGATTTGTGT 58.815 37.500 0.00 0.00 0.00 3.72
2305 2329 4.944962 TTCTTATGCGGAGATTTGTGTG 57.055 40.909 0.00 0.00 0.00 3.82
2306 2330 3.270027 TCTTATGCGGAGATTTGTGTGG 58.730 45.455 0.00 0.00 0.00 4.17
2307 2331 2.036958 TATGCGGAGATTTGTGTGGG 57.963 50.000 0.00 0.00 0.00 4.61
2308 2332 0.038166 ATGCGGAGATTTGTGTGGGT 59.962 50.000 0.00 0.00 0.00 4.51
2309 2333 0.687920 TGCGGAGATTTGTGTGGGTA 59.312 50.000 0.00 0.00 0.00 3.69
2310 2334 1.280710 TGCGGAGATTTGTGTGGGTAT 59.719 47.619 0.00 0.00 0.00 2.73
2311 2335 2.290641 TGCGGAGATTTGTGTGGGTATT 60.291 45.455 0.00 0.00 0.00 1.89
2312 2336 2.752903 GCGGAGATTTGTGTGGGTATTT 59.247 45.455 0.00 0.00 0.00 1.40
2313 2337 3.192633 GCGGAGATTTGTGTGGGTATTTT 59.807 43.478 0.00 0.00 0.00 1.82
2314 2338 4.674362 GCGGAGATTTGTGTGGGTATTTTC 60.674 45.833 0.00 0.00 0.00 2.29
2315 2339 4.700213 CGGAGATTTGTGTGGGTATTTTCT 59.300 41.667 0.00 0.00 0.00 2.52
2316 2340 5.183140 CGGAGATTTGTGTGGGTATTTTCTT 59.817 40.000 0.00 0.00 0.00 2.52
2317 2341 6.294508 CGGAGATTTGTGTGGGTATTTTCTTT 60.295 38.462 0.00 0.00 0.00 2.52
2318 2342 7.441836 GGAGATTTGTGTGGGTATTTTCTTTT 58.558 34.615 0.00 0.00 0.00 2.27
2319 2343 7.931407 GGAGATTTGTGTGGGTATTTTCTTTTT 59.069 33.333 0.00 0.00 0.00 1.94
2320 2344 8.887036 AGATTTGTGTGGGTATTTTCTTTTTC 57.113 30.769 0.00 0.00 0.00 2.29
2321 2345 8.482128 AGATTTGTGTGGGTATTTTCTTTTTCA 58.518 29.630 0.00 0.00 0.00 2.69
2322 2346 9.271828 GATTTGTGTGGGTATTTTCTTTTTCAT 57.728 29.630 0.00 0.00 0.00 2.57
2323 2347 9.625747 ATTTGTGTGGGTATTTTCTTTTTCATT 57.374 25.926 0.00 0.00 0.00 2.57
2324 2348 9.454859 TTTGTGTGGGTATTTTCTTTTTCATTT 57.545 25.926 0.00 0.00 0.00 2.32
2325 2349 9.454859 TTGTGTGGGTATTTTCTTTTTCATTTT 57.545 25.926 0.00 0.00 0.00 1.82
2326 2350 9.454859 TGTGTGGGTATTTTCTTTTTCATTTTT 57.545 25.926 0.00 0.00 0.00 1.94
2341 2365 9.448294 TTTTTCATTTTTATGCTTGATTTGTGC 57.552 25.926 0.00 0.00 0.00 4.57
2342 2366 7.725818 TTCATTTTTATGCTTGATTTGTGCA 57.274 28.000 0.00 0.00 41.13 4.57
2343 2367 7.725818 TCATTTTTATGCTTGATTTGTGCAA 57.274 28.000 0.00 0.00 40.24 4.08
2344 2368 8.325421 TCATTTTTATGCTTGATTTGTGCAAT 57.675 26.923 0.00 0.00 40.24 3.56
2345 2369 9.433153 TCATTTTTATGCTTGATTTGTGCAATA 57.567 25.926 0.00 0.00 40.24 1.90
2348 2372 8.830201 TTTTATGCTTGATTTGTGCAATAAGT 57.170 26.923 0.00 0.00 40.24 2.24
2349 2373 9.920133 TTTTATGCTTGATTTGTGCAATAAGTA 57.080 25.926 0.00 0.00 40.24 2.24
2350 2374 9.920133 TTTATGCTTGATTTGTGCAATAAGTAA 57.080 25.926 0.00 0.00 40.24 2.24
2351 2375 9.571810 TTATGCTTGATTTGTGCAATAAGTAAG 57.428 29.630 0.00 0.00 40.24 2.34
2352 2376 6.389091 TGCTTGATTTGTGCAATAAGTAAGG 58.611 36.000 0.00 0.00 33.48 2.69
2353 2377 5.289434 GCTTGATTTGTGCAATAAGTAAGGC 59.711 40.000 0.00 0.00 0.00 4.35
2354 2378 5.323371 TGATTTGTGCAATAAGTAAGGCC 57.677 39.130 0.00 0.00 0.00 5.19
2355 2379 4.159506 TGATTTGTGCAATAAGTAAGGCCC 59.840 41.667 0.00 0.00 0.00 5.80
2356 2380 2.889170 TGTGCAATAAGTAAGGCCCA 57.111 45.000 0.00 0.00 0.00 5.36
2357 2381 3.380471 TGTGCAATAAGTAAGGCCCAT 57.620 42.857 0.00 0.00 0.00 4.00
2358 2382 3.287222 TGTGCAATAAGTAAGGCCCATC 58.713 45.455 0.00 0.00 0.00 3.51
2369 2393 0.921896 AGGCCCATCTTACATGTGCT 59.078 50.000 9.11 0.00 0.00 4.40
2397 2421 3.120338 ACGGAGAACACATATTTTGCACG 60.120 43.478 0.00 0.00 0.00 5.34
2400 2424 5.321516 GGAGAACACATATTTTGCACGTAC 58.678 41.667 0.00 0.00 0.00 3.67
2422 2446 8.814235 CGTACTCGTGATTTATCTACCATTTTT 58.186 33.333 0.00 0.00 0.00 1.94
2450 2474 3.821421 ACTAACTAGGTATGTGCCTGC 57.179 47.619 0.00 0.00 39.60 4.85
2456 2480 2.098298 GTATGTGCCTGCGCGTTG 59.902 61.111 8.43 0.00 38.08 4.10
2525 2549 6.036408 GGGATAAATCTTGATGCAAAGCAAAC 59.964 38.462 0.00 0.00 43.62 2.93
2622 2666 8.859090 CCAATGATTAATCAGCTTTATTGGGTA 58.141 33.333 25.51 2.74 40.64 3.69
2677 2721 1.693627 TTAGCTTTTGGGCCGTGAAA 58.306 45.000 0.00 0.00 0.00 2.69
2678 2722 0.955905 TAGCTTTTGGGCCGTGAAAC 59.044 50.000 0.00 0.00 0.00 2.78
2721 2765 2.106332 GATGTCTGGCCGGTACCG 59.894 66.667 27.68 27.68 39.44 4.02
2736 2780 3.491447 CGGTACCGGGTTTACCATAAGAG 60.491 52.174 27.00 0.00 39.29 2.85
2740 2784 3.583966 ACCGGGTTTACCATAAGAGAACA 59.416 43.478 6.32 0.00 40.22 3.18
2754 2798 8.273557 CCATAAGAGAACATTATTTACGAACCG 58.726 37.037 0.00 0.00 0.00 4.44
2762 2806 8.663771 AACATTATTTACGAACCGTGAATTTC 57.336 30.769 13.18 0.00 41.85 2.17
2772 2816 5.062934 CGAACCGTGAATTTCTTGCTATACA 59.937 40.000 0.00 0.00 0.00 2.29
2777 2821 7.985184 ACCGTGAATTTCTTGCTATACAATAGA 59.015 33.333 0.00 0.00 37.72 1.98
2788 2832 9.149225 CTTGCTATACAATAGATTGATCTGGTC 57.851 37.037 9.21 0.00 40.14 4.02
2797 2864 2.879103 TTGATCTGGTCTTGGGGTTC 57.121 50.000 0.00 0.00 0.00 3.62
2800 2867 0.546747 ATCTGGTCTTGGGGTTCCGA 60.547 55.000 0.00 0.00 35.24 4.55
2818 2885 5.627499 TCCGAAAGATTGGTTTGATGAAG 57.373 39.130 0.00 0.00 0.00 3.02
2838 2905 8.647256 ATGAAGACCAGAAGAGAATGAAAATT 57.353 30.769 0.00 0.00 0.00 1.82
2861 2928 1.278127 TCGGTGGAAGATGGAAGGTTC 59.722 52.381 0.00 0.00 0.00 3.62
2868 2935 3.188667 GGAAGATGGAAGGTTCGACAAAC 59.811 47.826 0.00 0.00 37.12 2.93
2871 2938 0.533308 TGGAAGGTTCGACAAACGGG 60.533 55.000 0.00 0.00 42.82 5.28
2878 2945 0.393448 TTCGACAAACGGGTGATGGA 59.607 50.000 0.00 0.00 42.82 3.41
2892 2959 5.928839 CGGGTGATGGAGAGAATTAATACTG 59.071 44.000 0.00 0.00 0.00 2.74
2893 2960 6.239317 CGGGTGATGGAGAGAATTAATACTGA 60.239 42.308 0.00 0.00 0.00 3.41
2897 2964 8.200792 GTGATGGAGAGAATTAATACTGAGTGT 58.799 37.037 0.00 0.00 0.00 3.55
2943 3010 0.036952 ATGTGCTCACGGAGTTGGAG 60.037 55.000 0.00 0.00 41.61 3.86
2946 3013 0.541063 TGCTCACGGAGTTGGAGGTA 60.541 55.000 3.38 0.00 41.61 3.08
2954 3021 3.118149 ACGGAGTTGGAGGTAAACTTGTT 60.118 43.478 0.00 0.00 37.78 2.83
2981 3048 2.311463 CGGGTGGATGATCTAGACAGT 58.689 52.381 0.00 0.00 0.00 3.55
2985 3052 3.452474 GTGGATGATCTAGACAGTGTGC 58.548 50.000 0.00 0.00 0.00 4.57
2995 3062 3.601443 AGACAGTGTGCCTAGATGAAC 57.399 47.619 0.00 0.00 0.00 3.18
2999 3066 3.449018 ACAGTGTGCCTAGATGAACCTAG 59.551 47.826 0.00 0.00 36.70 3.02
3015 3082 4.060038 ACCTAGTGATTGTGCTAATCGG 57.940 45.455 8.89 6.92 0.00 4.18
3041 3108 6.276847 TGAAGCTAGGATTTTCGAAGATCTC 58.723 40.000 23.33 15.40 35.04 2.75
3066 3136 3.727726 GAAGCTTAAGATGCCTCTCTCC 58.272 50.000 6.67 0.00 0.00 3.71
3067 3137 2.756907 AGCTTAAGATGCCTCTCTCCA 58.243 47.619 6.67 0.00 0.00 3.86
3071 3141 4.630111 CTTAAGATGCCTCTCTCCATGTC 58.370 47.826 0.00 0.00 0.00 3.06
3072 3142 2.171568 AGATGCCTCTCTCCATGTCA 57.828 50.000 0.00 0.00 0.00 3.58
3104 3174 5.041940 CCTAATTGTAGTAGTCTTGGTCGC 58.958 45.833 0.00 0.00 0.00 5.19
3115 3185 1.447317 CTTGGTCGCTTGCCACTTGT 61.447 55.000 0.00 0.00 35.46 3.16
3136 3206 3.590824 CCGTTTGGTCTCATGCCC 58.409 61.111 0.00 0.00 0.00 5.36
3143 3213 1.213619 TGGTCTCATGCCCCAATCCA 61.214 55.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.702081 AGCGTCGTCGTGCTCCAC 62.702 66.667 8.56 0.00 36.53 4.02
8 9 4.702081 GGTGAGCGTCGTCGTGCT 62.702 66.667 13.16 13.16 45.90 4.40
12 13 4.813526 CTCCGGTGAGCGTCGTCG 62.814 72.222 0.00 0.00 40.37 5.12
27 28 3.945434 CATGTCGCCATGCCGCTC 61.945 66.667 0.00 0.00 41.88 5.03
39 40 2.105128 CCTCGCCCTCGACATGTC 59.895 66.667 16.21 16.21 40.21 3.06
40 41 2.680352 ACCTCGCCCTCGACATGT 60.680 61.111 0.00 0.00 40.21 3.21
41 42 2.202797 CACCTCGCCCTCGACATG 60.203 66.667 0.00 0.00 40.21 3.21
42 43 4.148825 GCACCTCGCCCTCGACAT 62.149 66.667 0.00 0.00 40.21 3.06
44 45 4.803426 CAGCACCTCGCCCTCGAC 62.803 72.222 0.00 0.00 44.04 4.20
71 72 4.966787 TTTGACCTGCCCCCACGC 62.967 66.667 0.00 0.00 0.00 5.34
72 73 2.203422 TTTTGACCTGCCCCCACG 60.203 61.111 0.00 0.00 0.00 4.94
73 74 1.908299 CCTTTTGACCTGCCCCCAC 60.908 63.158 0.00 0.00 0.00 4.61
74 75 2.525592 CCTTTTGACCTGCCCCCA 59.474 61.111 0.00 0.00 0.00 4.96
75 76 2.997315 GCCTTTTGACCTGCCCCC 60.997 66.667 0.00 0.00 0.00 5.40
76 77 2.118294 AGCCTTTTGACCTGCCCC 59.882 61.111 0.00 0.00 0.00 5.80
77 78 2.278330 CCAGCCTTTTGACCTGCCC 61.278 63.158 0.00 0.00 0.00 5.36
78 79 1.228552 TCCAGCCTTTTGACCTGCC 60.229 57.895 0.00 0.00 0.00 4.85
79 80 0.250901 TCTCCAGCCTTTTGACCTGC 60.251 55.000 0.00 0.00 0.00 4.85
80 81 2.276732 TTCTCCAGCCTTTTGACCTG 57.723 50.000 0.00 0.00 0.00 4.00
81 82 3.160269 CATTTCTCCAGCCTTTTGACCT 58.840 45.455 0.00 0.00 0.00 3.85
82 83 2.893489 ACATTTCTCCAGCCTTTTGACC 59.107 45.455 0.00 0.00 0.00 4.02
83 84 3.305608 CCACATTTCTCCAGCCTTTTGAC 60.306 47.826 0.00 0.00 0.00 3.18
84 85 2.892852 CCACATTTCTCCAGCCTTTTGA 59.107 45.455 0.00 0.00 0.00 2.69
85 86 2.892852 TCCACATTTCTCCAGCCTTTTG 59.107 45.455 0.00 0.00 0.00 2.44
86 87 3.160269 CTCCACATTTCTCCAGCCTTTT 58.840 45.455 0.00 0.00 0.00 2.27
87 88 2.556114 CCTCCACATTTCTCCAGCCTTT 60.556 50.000 0.00 0.00 0.00 3.11
88 89 1.005215 CCTCCACATTTCTCCAGCCTT 59.995 52.381 0.00 0.00 0.00 4.35
89 90 0.622665 CCTCCACATTTCTCCAGCCT 59.377 55.000 0.00 0.00 0.00 4.58
90 91 0.329596 ACCTCCACATTTCTCCAGCC 59.670 55.000 0.00 0.00 0.00 4.85
91 92 2.420687 CCTACCTCCACATTTCTCCAGC 60.421 54.545 0.00 0.00 0.00 4.85
92 93 2.840651 ACCTACCTCCACATTTCTCCAG 59.159 50.000 0.00 0.00 0.00 3.86
93 94 2.915869 ACCTACCTCCACATTTCTCCA 58.084 47.619 0.00 0.00 0.00 3.86
94 95 4.287552 TCTACCTACCTCCACATTTCTCC 58.712 47.826 0.00 0.00 0.00 3.71
95 96 5.740513 GCATCTACCTACCTCCACATTTCTC 60.741 48.000 0.00 0.00 0.00 2.87
96 97 4.101741 GCATCTACCTACCTCCACATTTCT 59.898 45.833 0.00 0.00 0.00 2.52
97 98 4.141711 TGCATCTACCTACCTCCACATTTC 60.142 45.833 0.00 0.00 0.00 2.17
98 99 3.780294 TGCATCTACCTACCTCCACATTT 59.220 43.478 0.00 0.00 0.00 2.32
99 100 3.384168 TGCATCTACCTACCTCCACATT 58.616 45.455 0.00 0.00 0.00 2.71
100 101 2.968574 CTGCATCTACCTACCTCCACAT 59.031 50.000 0.00 0.00 0.00 3.21
101 102 2.024369 TCTGCATCTACCTACCTCCACA 60.024 50.000 0.00 0.00 0.00 4.17
102 103 2.362717 GTCTGCATCTACCTACCTCCAC 59.637 54.545 0.00 0.00 0.00 4.02
103 104 2.245028 AGTCTGCATCTACCTACCTCCA 59.755 50.000 0.00 0.00 0.00 3.86
104 105 2.888414 GAGTCTGCATCTACCTACCTCC 59.112 54.545 0.00 0.00 0.00 4.30
105 106 3.818773 GAGAGTCTGCATCTACCTACCTC 59.181 52.174 0.00 0.00 0.00 3.85
106 107 3.746114 CGAGAGTCTGCATCTACCTACCT 60.746 52.174 0.00 0.00 0.00 3.08
107 108 2.550606 CGAGAGTCTGCATCTACCTACC 59.449 54.545 0.00 0.00 0.00 3.18
108 109 3.207778 ACGAGAGTCTGCATCTACCTAC 58.792 50.000 0.00 0.00 44.19 3.18
109 110 3.562343 ACGAGAGTCTGCATCTACCTA 57.438 47.619 0.00 0.00 44.19 3.08
110 111 2.428544 ACGAGAGTCTGCATCTACCT 57.571 50.000 0.00 0.00 44.19 3.08
124 125 1.285950 CGGTGTTGCTCTGACGAGA 59.714 57.895 0.00 0.00 39.74 4.04
125 126 1.734477 CCGGTGTTGCTCTGACGAG 60.734 63.158 0.00 0.00 40.35 4.18
126 127 2.338620 CCGGTGTTGCTCTGACGA 59.661 61.111 0.00 0.00 0.00 4.20
127 128 2.738521 CCCGGTGTTGCTCTGACG 60.739 66.667 0.00 0.00 0.00 4.35
128 129 2.358737 CCCCGGTGTTGCTCTGAC 60.359 66.667 0.00 0.00 0.00 3.51
129 130 4.329545 GCCCCGGTGTTGCTCTGA 62.330 66.667 0.00 0.00 0.00 3.27
130 131 4.641645 TGCCCCGGTGTTGCTCTG 62.642 66.667 0.00 0.00 0.00 3.35
131 132 4.335647 CTGCCCCGGTGTTGCTCT 62.336 66.667 0.00 0.00 0.00 4.09
145 146 4.154347 CTCCTCGCCTCCACCTGC 62.154 72.222 0.00 0.00 0.00 4.85
146 147 3.465403 CCTCCTCGCCTCCACCTG 61.465 72.222 0.00 0.00 0.00 4.00
147 148 3.966930 GACCTCCTCGCCTCCACCT 62.967 68.421 0.00 0.00 0.00 4.00
148 149 3.462678 GACCTCCTCGCCTCCACC 61.463 72.222 0.00 0.00 0.00 4.61
149 150 3.827898 CGACCTCCTCGCCTCCAC 61.828 72.222 0.00 0.00 35.06 4.02
156 157 4.200283 GCTCTGGCGACCTCCTCG 62.200 72.222 0.00 0.00 45.97 4.63
157 158 3.071206 TGCTCTGGCGACCTCCTC 61.071 66.667 0.00 0.00 42.25 3.71
158 159 3.073735 CTGCTCTGGCGACCTCCT 61.074 66.667 0.00 0.00 42.25 3.69
159 160 3.386237 ACTGCTCTGGCGACCTCC 61.386 66.667 0.00 0.00 42.25 4.30
160 161 2.125753 CACTGCTCTGGCGACCTC 60.126 66.667 0.00 0.00 42.25 3.85
161 162 4.385405 GCACTGCTCTGGCGACCT 62.385 66.667 0.00 0.00 42.25 3.85
162 163 4.687215 TGCACTGCTCTGGCGACC 62.687 66.667 1.98 0.00 42.25 4.79
163 164 3.117171 CTGCACTGCTCTGGCGAC 61.117 66.667 1.98 0.00 42.25 5.19
164 165 4.383861 CCTGCACTGCTCTGGCGA 62.384 66.667 1.98 0.00 42.25 5.54
168 169 4.383861 TCGCCCTGCACTGCTCTG 62.384 66.667 1.98 0.00 0.00 3.35
169 170 4.079850 CTCGCCCTGCACTGCTCT 62.080 66.667 1.98 0.00 0.00 4.09
175 176 4.101448 ATCCACCTCGCCCTGCAC 62.101 66.667 0.00 0.00 0.00 4.57
176 177 4.100084 CATCCACCTCGCCCTGCA 62.100 66.667 0.00 0.00 0.00 4.41
177 178 4.101448 ACATCCACCTCGCCCTGC 62.101 66.667 0.00 0.00 0.00 4.85
178 179 2.124983 CACATCCACCTCGCCCTG 60.125 66.667 0.00 0.00 0.00 4.45
179 180 3.402681 CCACATCCACCTCGCCCT 61.403 66.667 0.00 0.00 0.00 5.19
184 185 4.101448 AGCGGCCACATCCACCTC 62.101 66.667 2.24 0.00 0.00 3.85
185 186 4.101448 GAGCGGCCACATCCACCT 62.101 66.667 2.24 0.00 0.00 4.00
187 188 4.760047 ACGAGCGGCCACATCCAC 62.760 66.667 2.24 0.00 0.00 4.02
188 189 4.451150 GACGAGCGGCCACATCCA 62.451 66.667 2.24 0.00 0.00 3.41
198 199 2.395690 GTGCATTTCCGACGAGCG 59.604 61.111 0.00 0.00 40.47 5.03
199 200 2.395690 CGTGCATTTCCGACGAGC 59.604 61.111 0.00 0.00 35.05 5.03
200 201 2.452813 CCCGTGCATTTCCGACGAG 61.453 63.158 0.00 0.00 35.05 4.18
201 202 2.433491 CCCGTGCATTTCCGACGA 60.433 61.111 0.00 0.00 35.05 4.20
202 203 3.496131 CCCCGTGCATTTCCGACG 61.496 66.667 0.00 0.00 0.00 5.12
203 204 3.810896 GCCCCGTGCATTTCCGAC 61.811 66.667 0.00 0.00 40.77 4.79
212 213 4.864334 CCTCCATCTGCCCCGTGC 62.864 72.222 0.00 0.00 41.77 5.34
213 214 4.864334 GCCTCCATCTGCCCCGTG 62.864 72.222 0.00 0.00 0.00 4.94
217 218 4.554036 GTCCGCCTCCATCTGCCC 62.554 72.222 0.00 0.00 0.00 5.36
218 219 4.899239 CGTCCGCCTCCATCTGCC 62.899 72.222 0.00 0.00 0.00 4.85
219 220 4.148825 ACGTCCGCCTCCATCTGC 62.149 66.667 0.00 0.00 0.00 4.26
220 221 2.105128 GACGTCCGCCTCCATCTG 59.895 66.667 3.51 0.00 0.00 2.90
221 222 3.518998 CGACGTCCGCCTCCATCT 61.519 66.667 10.58 0.00 0.00 2.90
222 223 3.753070 GACGACGTCCGCCTCCATC 62.753 68.421 17.25 0.00 43.32 3.51
223 224 3.823330 GACGACGTCCGCCTCCAT 61.823 66.667 17.25 0.00 43.32 3.41
226 227 3.996744 CTTCGACGACGTCCGCCTC 62.997 68.421 21.63 0.00 43.32 4.70
227 228 4.099170 CTTCGACGACGTCCGCCT 62.099 66.667 21.63 0.00 43.32 5.52
230 231 2.870161 CTGCTTCGACGACGTCCG 60.870 66.667 21.63 16.15 45.44 4.79
231 232 1.512310 CTCTGCTTCGACGACGTCC 60.512 63.158 21.63 8.57 40.69 4.79
232 233 2.147133 GCTCTGCTTCGACGACGTC 61.147 63.158 18.04 18.04 40.69 4.34
233 234 2.126812 GCTCTGCTTCGACGACGT 60.127 61.111 0.00 0.00 40.69 4.34
234 235 2.126850 TGCTCTGCTTCGACGACG 60.127 61.111 0.00 0.00 41.26 5.12
235 236 1.803519 CCTGCTCTGCTTCGACGAC 60.804 63.158 0.00 0.00 0.00 4.34
236 237 2.201436 GACCTGCTCTGCTTCGACGA 62.201 60.000 0.00 0.00 0.00 4.20
237 238 1.803519 GACCTGCTCTGCTTCGACG 60.804 63.158 0.00 0.00 0.00 5.12
238 239 1.803519 CGACCTGCTCTGCTTCGAC 60.804 63.158 0.00 0.00 31.43 4.20
239 240 2.268802 ACGACCTGCTCTGCTTCGA 61.269 57.895 12.81 0.00 33.08 3.71
240 241 2.091112 CACGACCTGCTCTGCTTCG 61.091 63.158 0.00 0.00 34.23 3.79
241 242 0.601311 AACACGACCTGCTCTGCTTC 60.601 55.000 0.00 0.00 0.00 3.86
242 243 0.179045 AAACACGACCTGCTCTGCTT 60.179 50.000 0.00 0.00 0.00 3.91
243 244 0.882042 CAAACACGACCTGCTCTGCT 60.882 55.000 0.00 0.00 0.00 4.24
244 245 0.880278 TCAAACACGACCTGCTCTGC 60.880 55.000 0.00 0.00 0.00 4.26
245 246 1.800805 ATCAAACACGACCTGCTCTG 58.199 50.000 0.00 0.00 0.00 3.35
246 247 2.549754 CAAATCAAACACGACCTGCTCT 59.450 45.455 0.00 0.00 0.00 4.09
247 248 2.350772 CCAAATCAAACACGACCTGCTC 60.351 50.000 0.00 0.00 0.00 4.26
248 249 1.608590 CCAAATCAAACACGACCTGCT 59.391 47.619 0.00 0.00 0.00 4.24
249 250 1.335872 CCCAAATCAAACACGACCTGC 60.336 52.381 0.00 0.00 0.00 4.85
250 251 1.269448 CCCCAAATCAAACACGACCTG 59.731 52.381 0.00 0.00 0.00 4.00
251 252 1.616159 CCCCAAATCAAACACGACCT 58.384 50.000 0.00 0.00 0.00 3.85
252 253 0.601057 CCCCCAAATCAAACACGACC 59.399 55.000 0.00 0.00 0.00 4.79
253 254 1.611519 TCCCCCAAATCAAACACGAC 58.388 50.000 0.00 0.00 0.00 4.34
254 255 2.366640 TTCCCCCAAATCAAACACGA 57.633 45.000 0.00 0.00 0.00 4.35
255 256 3.127589 GTTTTCCCCCAAATCAAACACG 58.872 45.455 0.00 0.00 0.00 4.49
256 257 4.126437 CAGTTTTCCCCCAAATCAAACAC 58.874 43.478 0.00 0.00 31.06 3.32
257 258 4.033709 TCAGTTTTCCCCCAAATCAAACA 58.966 39.130 0.00 0.00 31.06 2.83
258 259 4.100963 ACTCAGTTTTCCCCCAAATCAAAC 59.899 41.667 0.00 0.00 0.00 2.93
259 260 4.100808 CACTCAGTTTTCCCCCAAATCAAA 59.899 41.667 0.00 0.00 0.00 2.69
260 261 3.640967 CACTCAGTTTTCCCCCAAATCAA 59.359 43.478 0.00 0.00 0.00 2.57
261 262 3.117322 TCACTCAGTTTTCCCCCAAATCA 60.117 43.478 0.00 0.00 0.00 2.57
262 263 3.496331 TCACTCAGTTTTCCCCCAAATC 58.504 45.455 0.00 0.00 0.00 2.17
263 264 3.611025 TCACTCAGTTTTCCCCCAAAT 57.389 42.857 0.00 0.00 0.00 2.32
264 265 3.390175 TTCACTCAGTTTTCCCCCAAA 57.610 42.857 0.00 0.00 0.00 3.28
265 266 3.053245 TCTTTCACTCAGTTTTCCCCCAA 60.053 43.478 0.00 0.00 0.00 4.12
266 267 2.512056 TCTTTCACTCAGTTTTCCCCCA 59.488 45.455 0.00 0.00 0.00 4.96
267 268 3.149981 CTCTTTCACTCAGTTTTCCCCC 58.850 50.000 0.00 0.00 0.00 5.40
268 269 4.086706 TCTCTTTCACTCAGTTTTCCCC 57.913 45.455 0.00 0.00 0.00 4.81
269 270 6.372937 CCTTATCTCTTTCACTCAGTTTTCCC 59.627 42.308 0.00 0.00 0.00 3.97
270 271 7.162082 TCCTTATCTCTTTCACTCAGTTTTCC 58.838 38.462 0.00 0.00 0.00 3.13
271 272 8.608844 TTCCTTATCTCTTTCACTCAGTTTTC 57.391 34.615 0.00 0.00 0.00 2.29
272 273 8.432805 TCTTCCTTATCTCTTTCACTCAGTTTT 58.567 33.333 0.00 0.00 0.00 2.43
273 274 7.967908 TCTTCCTTATCTCTTTCACTCAGTTT 58.032 34.615 0.00 0.00 0.00 2.66
274 275 7.546250 TCTTCCTTATCTCTTTCACTCAGTT 57.454 36.000 0.00 0.00 0.00 3.16
275 276 7.310361 CCTTCTTCCTTATCTCTTTCACTCAGT 60.310 40.741 0.00 0.00 0.00 3.41
276 277 7.041107 CCTTCTTCCTTATCTCTTTCACTCAG 58.959 42.308 0.00 0.00 0.00 3.35
277 278 6.726299 TCCTTCTTCCTTATCTCTTTCACTCA 59.274 38.462 0.00 0.00 0.00 3.41
278 279 7.176589 TCCTTCTTCCTTATCTCTTTCACTC 57.823 40.000 0.00 0.00 0.00 3.51
279 280 7.456269 TCTTCCTTCTTCCTTATCTCTTTCACT 59.544 37.037 0.00 0.00 0.00 3.41
280 281 7.616313 TCTTCCTTCTTCCTTATCTCTTTCAC 58.384 38.462 0.00 0.00 0.00 3.18
281 282 7.798710 TCTTCCTTCTTCCTTATCTCTTTCA 57.201 36.000 0.00 0.00 0.00 2.69
282 283 7.714813 CCATCTTCCTTCTTCCTTATCTCTTTC 59.285 40.741 0.00 0.00 0.00 2.62
283 284 7.404396 TCCATCTTCCTTCTTCCTTATCTCTTT 59.596 37.037 0.00 0.00 0.00 2.52
284 285 6.905776 TCCATCTTCCTTCTTCCTTATCTCTT 59.094 38.462 0.00 0.00 0.00 2.85
285 286 6.448202 TCCATCTTCCTTCTTCCTTATCTCT 58.552 40.000 0.00 0.00 0.00 3.10
286 287 6.739331 TCCATCTTCCTTCTTCCTTATCTC 57.261 41.667 0.00 0.00 0.00 2.75
287 288 6.465607 GCATCCATCTTCCTTCTTCCTTATCT 60.466 42.308 0.00 0.00 0.00 1.98
288 289 5.704978 GCATCCATCTTCCTTCTTCCTTATC 59.295 44.000 0.00 0.00 0.00 1.75
289 290 5.629125 GCATCCATCTTCCTTCTTCCTTAT 58.371 41.667 0.00 0.00 0.00 1.73
290 291 4.443457 CGCATCCATCTTCCTTCTTCCTTA 60.443 45.833 0.00 0.00 0.00 2.69
291 292 3.683847 CGCATCCATCTTCCTTCTTCCTT 60.684 47.826 0.00 0.00 0.00 3.36
292 293 2.158842 CGCATCCATCTTCCTTCTTCCT 60.159 50.000 0.00 0.00 0.00 3.36
293 294 2.216898 CGCATCCATCTTCCTTCTTCC 58.783 52.381 0.00 0.00 0.00 3.46
294 295 2.216898 CCGCATCCATCTTCCTTCTTC 58.783 52.381 0.00 0.00 0.00 2.87
295 296 1.561542 ACCGCATCCATCTTCCTTCTT 59.438 47.619 0.00 0.00 0.00 2.52
296 297 1.207791 ACCGCATCCATCTTCCTTCT 58.792 50.000 0.00 0.00 0.00 2.85
297 298 2.044123 AACCGCATCCATCTTCCTTC 57.956 50.000 0.00 0.00 0.00 3.46
298 299 2.094675 CAAACCGCATCCATCTTCCTT 58.905 47.619 0.00 0.00 0.00 3.36
299 300 1.755179 CAAACCGCATCCATCTTCCT 58.245 50.000 0.00 0.00 0.00 3.36
300 301 0.101219 GCAAACCGCATCCATCTTCC 59.899 55.000 0.00 0.00 41.79 3.46
301 302 3.629858 GCAAACCGCATCCATCTTC 57.370 52.632 0.00 0.00 41.79 2.87
311 312 1.882989 TTATGGGCCTTGCAAACCGC 61.883 55.000 4.53 7.91 42.89 5.68
312 313 0.173255 CTTATGGGCCTTGCAAACCG 59.827 55.000 4.53 0.00 0.00 4.44
313 314 0.536724 CCTTATGGGCCTTGCAAACC 59.463 55.000 4.53 9.26 0.00 3.27
324 325 1.937191 ACCAAACAAGGCCTTATGGG 58.063 50.000 31.84 25.90 38.36 4.00
325 326 3.613910 CGAAACCAAACAAGGCCTTATGG 60.614 47.826 29.26 29.26 0.00 2.74
326 327 3.254657 TCGAAACCAAACAAGGCCTTATG 59.745 43.478 20.00 16.86 0.00 1.90
327 328 3.492337 TCGAAACCAAACAAGGCCTTAT 58.508 40.909 20.00 3.02 0.00 1.73
328 329 2.882137 CTCGAAACCAAACAAGGCCTTA 59.118 45.455 20.00 0.00 0.00 2.69
329 330 1.681264 CTCGAAACCAAACAAGGCCTT 59.319 47.619 13.78 13.78 0.00 4.35
369 370 3.654876 CCTCCCCAGGGATTAGACA 57.345 57.895 7.25 0.00 44.24 3.41
417 418 0.534203 AACCAAATGTGTCGACGGCT 60.534 50.000 11.62 0.00 0.00 5.52
427 428 0.758123 CAAGGGGCACAACCAAATGT 59.242 50.000 0.00 0.00 42.05 2.71
581 584 1.107538 CGGAGGAGATCGCCAGGTAA 61.108 60.000 18.44 0.00 34.79 2.85
613 620 2.181523 TAGGAAGCAGAGGGGCCTGA 62.182 60.000 0.84 0.00 36.29 3.86
646 654 8.474831 TCCAGATAATTTCAAACATCTCTCGTA 58.525 33.333 0.00 0.00 0.00 3.43
730 738 3.077359 CACCATGGGAGAACTTTCTGTC 58.923 50.000 18.09 0.00 37.73 3.51
731 739 2.224867 CCACCATGGGAGAACTTTCTGT 60.225 50.000 18.09 0.00 37.73 3.41
762 774 3.160545 GCAATTTCACGAACACATACGG 58.839 45.455 0.00 0.00 0.00 4.02
764 776 4.403453 GAGGCAATTTCACGAACACATAC 58.597 43.478 0.00 0.00 0.00 2.39
831 843 4.164221 CCACTCCTCCTCATTTAGGCTTTA 59.836 45.833 0.00 0.00 46.10 1.85
839 851 1.276421 CACGTCCACTCCTCCTCATTT 59.724 52.381 0.00 0.00 0.00 2.32
840 852 0.898320 CACGTCCACTCCTCCTCATT 59.102 55.000 0.00 0.00 0.00 2.57
841 853 0.972983 CCACGTCCACTCCTCCTCAT 60.973 60.000 0.00 0.00 0.00 2.90
842 854 1.606601 CCACGTCCACTCCTCCTCA 60.607 63.158 0.00 0.00 0.00 3.86
843 855 3.007973 GCCACGTCCACTCCTCCTC 62.008 68.421 0.00 0.00 0.00 3.71
844 856 2.997897 GCCACGTCCACTCCTCCT 60.998 66.667 0.00 0.00 0.00 3.69
845 857 2.997897 AGCCACGTCCACTCCTCC 60.998 66.667 0.00 0.00 0.00 4.30
846 858 2.262915 CAGCCACGTCCACTCCTC 59.737 66.667 0.00 0.00 0.00 3.71
847 859 3.314331 CCAGCCACGTCCACTCCT 61.314 66.667 0.00 0.00 0.00 3.69
849 861 3.941657 GAGCCAGCCACGTCCACTC 62.942 68.421 0.00 0.00 0.00 3.51
850 862 4.008933 GAGCCAGCCACGTCCACT 62.009 66.667 0.00 0.00 0.00 4.00
851 863 2.238847 TATGAGCCAGCCACGTCCAC 62.239 60.000 0.00 0.00 0.00 4.02
852 864 1.960040 CTATGAGCCAGCCACGTCCA 61.960 60.000 0.00 0.00 0.00 4.02
853 865 1.227380 CTATGAGCCAGCCACGTCC 60.227 63.158 0.00 0.00 0.00 4.79
854 866 1.227380 CCTATGAGCCAGCCACGTC 60.227 63.158 0.00 0.00 0.00 4.34
855 867 1.050988 ATCCTATGAGCCAGCCACGT 61.051 55.000 0.00 0.00 0.00 4.49
856 868 0.320247 GATCCTATGAGCCAGCCACG 60.320 60.000 0.00 0.00 0.00 4.94
857 869 0.036022 GGATCCTATGAGCCAGCCAC 59.964 60.000 3.84 0.00 46.65 5.01
858 870 2.456627 GGATCCTATGAGCCAGCCA 58.543 57.895 3.84 0.00 46.65 4.75
864 876 1.871080 CCACGTTGGATCCTATGAGC 58.129 55.000 20.47 0.00 40.96 4.26
865 877 1.869754 CGCCACGTTGGATCCTATGAG 60.870 57.143 20.47 13.06 40.96 2.90
866 878 0.104120 CGCCACGTTGGATCCTATGA 59.896 55.000 20.47 0.00 40.96 2.15
867 879 0.104120 TCGCCACGTTGGATCCTATG 59.896 55.000 14.23 13.64 40.96 2.23
868 880 0.828022 TTCGCCACGTTGGATCCTAT 59.172 50.000 14.23 0.00 40.96 2.57
869 881 0.108520 GTTCGCCACGTTGGATCCTA 60.109 55.000 14.23 1.56 40.96 2.94
870 882 1.375523 GTTCGCCACGTTGGATCCT 60.376 57.895 14.23 0.00 40.96 3.24
871 883 1.024579 ATGTTCGCCACGTTGGATCC 61.025 55.000 4.20 4.20 40.96 3.36
872 884 0.096976 CATGTTCGCCACGTTGGATC 59.903 55.000 8.04 0.00 40.96 3.36
873 885 0.321210 TCATGTTCGCCACGTTGGAT 60.321 50.000 8.04 0.00 40.96 3.41
874 886 0.533085 TTCATGTTCGCCACGTTGGA 60.533 50.000 8.04 0.00 40.96 3.53
875 887 0.385473 GTTCATGTTCGCCACGTTGG 60.385 55.000 0.00 0.00 41.55 3.77
876 888 0.721155 CGTTCATGTTCGCCACGTTG 60.721 55.000 0.00 0.00 0.00 4.10
877 889 1.155424 ACGTTCATGTTCGCCACGTT 61.155 50.000 10.88 0.00 41.11 3.99
878 890 1.155424 AACGTTCATGTTCGCCACGT 61.155 50.000 0.00 0.00 45.62 4.49
879 891 0.041663 AAACGTTCATGTTCGCCACG 60.042 50.000 0.00 0.00 36.91 4.94
880 892 2.041244 GAAAACGTTCATGTTCGCCAC 58.959 47.619 0.00 0.53 33.61 5.01
881 893 1.002251 GGAAAACGTTCATGTTCGCCA 60.002 47.619 0.00 0.00 35.25 5.69
882 894 1.265905 AGGAAAACGTTCATGTTCGCC 59.734 47.619 0.00 0.00 35.25 5.54
883 895 2.681152 AGGAAAACGTTCATGTTCGC 57.319 45.000 0.00 0.00 35.25 4.70
884 896 3.657625 CGAAAGGAAAACGTTCATGTTCG 59.342 43.478 0.00 10.06 37.41 3.95
885 897 4.839796 TCGAAAGGAAAACGTTCATGTTC 58.160 39.130 0.00 1.10 37.41 3.18
886 898 4.886247 TCGAAAGGAAAACGTTCATGTT 57.114 36.364 0.00 0.00 37.41 2.71
887 899 4.886247 TTCGAAAGGAAAACGTTCATGT 57.114 36.364 0.00 0.00 37.41 3.21
888 900 6.599437 AGTATTCGAAAGGAAAACGTTCATG 58.401 36.000 0.00 0.00 38.36 3.07
889 901 6.796705 AGTATTCGAAAGGAAAACGTTCAT 57.203 33.333 0.00 0.00 38.36 2.57
890 902 6.700960 TGTAGTATTCGAAAGGAAAACGTTCA 59.299 34.615 0.00 0.00 38.36 3.18
891 903 7.005958 GTGTAGTATTCGAAAGGAAAACGTTC 58.994 38.462 0.00 0.00 38.36 3.95
892 904 6.703165 AGTGTAGTATTCGAAAGGAAAACGTT 59.297 34.615 0.00 0.00 38.36 3.99
893 905 6.218746 AGTGTAGTATTCGAAAGGAAAACGT 58.781 36.000 0.00 0.00 38.36 3.99
894 906 6.701432 AGTGTAGTATTCGAAAGGAAAACG 57.299 37.500 0.00 0.00 38.36 3.60
897 909 8.702438 CGTAAAAGTGTAGTATTCGAAAGGAAA 58.298 33.333 0.00 0.00 38.36 3.13
898 910 7.867403 ACGTAAAAGTGTAGTATTCGAAAGGAA 59.133 33.333 0.00 0.00 39.42 3.36
899 911 7.370383 ACGTAAAAGTGTAGTATTCGAAAGGA 58.630 34.615 0.00 0.00 0.00 3.36
900 912 7.572502 ACGTAAAAGTGTAGTATTCGAAAGG 57.427 36.000 0.00 0.00 0.00 3.11
916 928 7.644551 TGTTTGGTTGCAAAGTATACGTAAAAG 59.355 33.333 0.00 0.00 0.00 2.27
923 935 5.154222 GCTCTGTTTGGTTGCAAAGTATAC 58.846 41.667 0.00 0.00 0.00 1.47
935 947 1.972588 ATCCCTAGGCTCTGTTTGGT 58.027 50.000 2.05 0.00 0.00 3.67
950 962 2.310647 TGGACCTTGGAAACCTTATCCC 59.689 50.000 0.00 0.00 36.04 3.85
964 977 2.045926 GGCTGTGCGATGGACCTT 60.046 61.111 0.00 0.00 0.00 3.50
1050 1063 1.520787 GAGGTGTTGATACCGCCCG 60.521 63.158 0.00 0.00 45.56 6.13
1163 1176 4.980903 CGCGTGTTTGTGGCTGCC 62.981 66.667 12.87 12.87 0.00 4.85
1169 1182 2.544359 CGAGACCGCGTGTTTGTG 59.456 61.111 4.92 0.00 0.00 3.33
1386 1399 0.325296 TACCTTGTCATCCGCCTCCT 60.325 55.000 0.00 0.00 0.00 3.69
1398 1411 3.985925 GTCAAAATCGACGAGTACCTTGT 59.014 43.478 3.01 0.00 0.00 3.16
1557 1570 0.676151 GAGAGGAGGCAGTGCAAAGG 60.676 60.000 18.61 0.00 0.00 3.11
1616 1640 4.677832 CGGTCCCGAAAAAGTAATTTGTTG 59.322 41.667 0.00 0.00 42.83 3.33
1619 1643 4.752661 TCGGTCCCGAAAAAGTAATTTG 57.247 40.909 5.84 0.00 46.01 2.32
1637 1661 0.525668 CCAAATCTCTCGGTCGTCGG 60.526 60.000 0.00 0.00 39.77 4.79
1660 1684 3.176552 CTGATCACAGGCAAGAGTAGG 57.823 52.381 0.00 0.00 40.14 3.18
1724 1748 2.957006 AGAGGCCATGATCATTTTCTGC 59.043 45.455 5.16 4.13 0.00 4.26
1752 1776 2.268298 GTCGACCTGAAACGTGCATAT 58.732 47.619 3.51 0.00 0.00 1.78
1886 1910 0.721718 CGTCCAATCTTTCGCCAGTC 59.278 55.000 0.00 0.00 0.00 3.51
1944 1968 2.432874 TGAATACGTCATCGATGGGGTT 59.567 45.455 24.61 15.00 40.62 4.11
2036 2060 0.535335 GGAACAGGCACGATCAGGTA 59.465 55.000 0.00 0.00 0.00 3.08
2054 2078 3.061322 TCACGAAATTTGTAGACCACGG 58.939 45.455 0.00 0.00 0.00 4.94
2110 2134 1.803334 TTATTCGCCGAGCAACAAGT 58.197 45.000 0.00 0.00 0.00 3.16
2186 2210 7.013942 TGTAATACTTACGGCACATCTAGATGT 59.986 37.037 28.95 28.95 44.32 3.06
2187 2211 7.326305 GTGTAATACTTACGGCACATCTAGATG 59.674 40.741 27.63 27.63 40.47 2.90
2188 2212 7.013942 TGTGTAATACTTACGGCACATCTAGAT 59.986 37.037 0.00 0.00 38.98 1.98
2189 2213 6.319405 TGTGTAATACTTACGGCACATCTAGA 59.681 38.462 0.00 0.00 38.98 2.43
2190 2214 6.500910 TGTGTAATACTTACGGCACATCTAG 58.499 40.000 0.00 0.00 38.98 2.43
2191 2215 6.453926 TGTGTAATACTTACGGCACATCTA 57.546 37.500 0.00 0.00 38.98 1.98
2192 2216 5.333299 TGTGTAATACTTACGGCACATCT 57.667 39.130 0.00 0.00 38.98 2.90
2194 2218 5.914033 AGATGTGTAATACTTACGGCACAT 58.086 37.500 7.56 7.56 46.19 3.21
2195 2219 5.333299 AGATGTGTAATACTTACGGCACA 57.667 39.130 0.00 0.00 40.42 4.57
2196 2220 6.976925 ACTTAGATGTGTAATACTTACGGCAC 59.023 38.462 0.00 0.00 38.98 5.01
2197 2221 7.104043 ACTTAGATGTGTAATACTTACGGCA 57.896 36.000 0.00 0.00 38.98 5.69
2198 2222 6.640092 GGACTTAGATGTGTAATACTTACGGC 59.360 42.308 0.00 0.00 38.98 5.68
2199 2223 7.938715 AGGACTTAGATGTGTAATACTTACGG 58.061 38.462 0.00 0.00 38.98 4.02
2204 2228 9.642343 TGACATAGGACTTAGATGTGTAATACT 57.358 33.333 0.00 0.00 33.99 2.12
2207 2231 9.770097 CAATGACATAGGACTTAGATGTGTAAT 57.230 33.333 0.00 0.00 33.99 1.89
2208 2232 8.977412 TCAATGACATAGGACTTAGATGTGTAA 58.023 33.333 0.00 0.00 33.99 2.41
2209 2233 8.533569 TCAATGACATAGGACTTAGATGTGTA 57.466 34.615 0.00 0.00 33.99 2.90
2210 2234 7.423844 TCAATGACATAGGACTTAGATGTGT 57.576 36.000 0.00 0.00 33.99 3.72
2211 2235 8.366401 AGATCAATGACATAGGACTTAGATGTG 58.634 37.037 0.00 0.00 33.99 3.21
2212 2236 8.489676 AGATCAATGACATAGGACTTAGATGT 57.510 34.615 0.00 0.00 36.52 3.06
2216 2240 9.149225 GCATAAGATCAATGACATAGGACTTAG 57.851 37.037 11.18 0.00 0.00 2.18
2217 2241 7.814587 CGCATAAGATCAATGACATAGGACTTA 59.185 37.037 11.18 0.00 0.00 2.24
2218 2242 6.648310 CGCATAAGATCAATGACATAGGACTT 59.352 38.462 11.18 0.00 0.00 3.01
2219 2243 6.162079 CGCATAAGATCAATGACATAGGACT 58.838 40.000 11.18 0.00 0.00 3.85
2220 2244 5.349817 CCGCATAAGATCAATGACATAGGAC 59.650 44.000 11.18 0.00 0.00 3.85
2221 2245 5.245977 TCCGCATAAGATCAATGACATAGGA 59.754 40.000 11.18 8.14 0.00 2.94
2222 2246 5.482006 TCCGCATAAGATCAATGACATAGG 58.518 41.667 11.18 6.49 0.00 2.57
2223 2247 6.393171 TCTCCGCATAAGATCAATGACATAG 58.607 40.000 11.18 4.12 0.00 2.23
2224 2248 6.345096 TCTCCGCATAAGATCAATGACATA 57.655 37.500 11.18 0.00 0.00 2.29
2225 2249 5.219343 TCTCCGCATAAGATCAATGACAT 57.781 39.130 11.18 0.00 0.00 3.06
2226 2250 4.670896 TCTCCGCATAAGATCAATGACA 57.329 40.909 11.18 0.00 0.00 3.58
2227 2251 6.017605 ACAAATCTCCGCATAAGATCAATGAC 60.018 38.462 11.18 3.49 32.29 3.06
2228 2252 6.017687 CACAAATCTCCGCATAAGATCAATGA 60.018 38.462 11.18 0.00 32.29 2.57
2229 2253 6.140786 CACAAATCTCCGCATAAGATCAATG 58.859 40.000 0.00 0.00 32.29 2.82
2230 2254 5.824624 ACACAAATCTCCGCATAAGATCAAT 59.175 36.000 0.00 0.00 32.29 2.57
2231 2255 5.065090 CACACAAATCTCCGCATAAGATCAA 59.935 40.000 0.00 0.00 32.29 2.57
2232 2256 4.571984 CACACAAATCTCCGCATAAGATCA 59.428 41.667 0.00 0.00 32.29 2.92
2233 2257 4.024556 CCACACAAATCTCCGCATAAGATC 60.025 45.833 0.00 0.00 32.29 2.75
2234 2258 3.879295 CCACACAAATCTCCGCATAAGAT 59.121 43.478 0.00 0.00 34.96 2.40
2235 2259 3.055458 TCCACACAAATCTCCGCATAAGA 60.055 43.478 0.00 0.00 0.00 2.10
2236 2260 3.270027 TCCACACAAATCTCCGCATAAG 58.730 45.455 0.00 0.00 0.00 1.73
2237 2261 3.342377 TCCACACAAATCTCCGCATAA 57.658 42.857 0.00 0.00 0.00 1.90
2238 2262 3.558931 ATCCACACAAATCTCCGCATA 57.441 42.857 0.00 0.00 0.00 3.14
2239 2263 2.425143 ATCCACACAAATCTCCGCAT 57.575 45.000 0.00 0.00 0.00 4.73
2240 2264 3.558931 ATATCCACACAAATCTCCGCA 57.441 42.857 0.00 0.00 0.00 5.69
2241 2265 4.900635 AAATATCCACACAAATCTCCGC 57.099 40.909 0.00 0.00 0.00 5.54
2242 2266 6.683974 AGAAAATATCCACACAAATCTCCG 57.316 37.500 0.00 0.00 0.00 4.63
2243 2267 9.710900 AAAAAGAAAATATCCACACAAATCTCC 57.289 29.630 0.00 0.00 0.00 3.71
2268 2292 8.977505 CCGCATAAGAATGAAAAAGAAAAGAAA 58.022 29.630 0.00 0.00 34.84 2.52
2269 2293 8.356657 TCCGCATAAGAATGAAAAAGAAAAGAA 58.643 29.630 0.00 0.00 34.84 2.52
2270 2294 7.881142 TCCGCATAAGAATGAAAAAGAAAAGA 58.119 30.769 0.00 0.00 34.84 2.52
2271 2295 8.023128 TCTCCGCATAAGAATGAAAAAGAAAAG 58.977 33.333 0.00 0.00 34.84 2.27
2272 2296 7.881142 TCTCCGCATAAGAATGAAAAAGAAAA 58.119 30.769 0.00 0.00 34.84 2.29
2273 2297 7.447374 TCTCCGCATAAGAATGAAAAAGAAA 57.553 32.000 0.00 0.00 34.84 2.52
2274 2298 7.630242 ATCTCCGCATAAGAATGAAAAAGAA 57.370 32.000 0.00 0.00 34.84 2.52
2275 2299 7.630242 AATCTCCGCATAAGAATGAAAAAGA 57.370 32.000 0.00 0.00 34.84 2.52
2276 2300 7.756722 ACAAATCTCCGCATAAGAATGAAAAAG 59.243 33.333 0.00 0.00 34.84 2.27
2277 2301 7.541783 CACAAATCTCCGCATAAGAATGAAAAA 59.458 33.333 0.00 0.00 34.84 1.94
2278 2302 7.028962 CACAAATCTCCGCATAAGAATGAAAA 58.971 34.615 0.00 0.00 34.84 2.29
2279 2303 6.150976 ACACAAATCTCCGCATAAGAATGAAA 59.849 34.615 0.00 0.00 34.84 2.69
2280 2304 5.647658 ACACAAATCTCCGCATAAGAATGAA 59.352 36.000 0.00 0.00 34.84 2.57
2281 2305 5.065090 CACACAAATCTCCGCATAAGAATGA 59.935 40.000 0.00 0.00 34.84 2.57
2282 2306 5.268544 CACACAAATCTCCGCATAAGAATG 58.731 41.667 0.00 0.00 36.09 2.67
2283 2307 4.336433 CCACACAAATCTCCGCATAAGAAT 59.664 41.667 0.00 0.00 0.00 2.40
2284 2308 3.689161 CCACACAAATCTCCGCATAAGAA 59.311 43.478 0.00 0.00 0.00 2.52
2285 2309 3.270027 CCACACAAATCTCCGCATAAGA 58.730 45.455 0.00 0.00 0.00 2.10
2286 2310 2.355756 CCCACACAAATCTCCGCATAAG 59.644 50.000 0.00 0.00 0.00 1.73
2287 2311 2.290641 ACCCACACAAATCTCCGCATAA 60.291 45.455 0.00 0.00 0.00 1.90
2288 2312 1.280710 ACCCACACAAATCTCCGCATA 59.719 47.619 0.00 0.00 0.00 3.14
2289 2313 0.038166 ACCCACACAAATCTCCGCAT 59.962 50.000 0.00 0.00 0.00 4.73
2290 2314 0.687920 TACCCACACAAATCTCCGCA 59.312 50.000 0.00 0.00 0.00 5.69
2291 2315 2.038387 ATACCCACACAAATCTCCGC 57.962 50.000 0.00 0.00 0.00 5.54
2292 2316 4.700213 AGAAAATACCCACACAAATCTCCG 59.300 41.667 0.00 0.00 0.00 4.63
2293 2317 6.590234 AAGAAAATACCCACACAAATCTCC 57.410 37.500 0.00 0.00 0.00 3.71
2294 2318 8.887036 AAAAAGAAAATACCCACACAAATCTC 57.113 30.769 0.00 0.00 0.00 2.75
2295 2319 8.482128 TGAAAAAGAAAATACCCACACAAATCT 58.518 29.630 0.00 0.00 0.00 2.40
2296 2320 8.655651 TGAAAAAGAAAATACCCACACAAATC 57.344 30.769 0.00 0.00 0.00 2.17
2297 2321 9.625747 AATGAAAAAGAAAATACCCACACAAAT 57.374 25.926 0.00 0.00 0.00 2.32
2298 2322 9.454859 AAATGAAAAAGAAAATACCCACACAAA 57.545 25.926 0.00 0.00 0.00 2.83
2299 2323 9.454859 AAAATGAAAAAGAAAATACCCACACAA 57.545 25.926 0.00 0.00 0.00 3.33
2300 2324 9.454859 AAAAATGAAAAAGAAAATACCCACACA 57.545 25.926 0.00 0.00 0.00 3.72
2315 2339 9.448294 GCACAAATCAAGCATAAAAATGAAAAA 57.552 25.926 0.00 0.00 0.00 1.94
2316 2340 8.618677 TGCACAAATCAAGCATAAAAATGAAAA 58.381 25.926 0.00 0.00 32.55 2.29
2317 2341 8.151141 TGCACAAATCAAGCATAAAAATGAAA 57.849 26.923 0.00 0.00 32.55 2.69
2318 2342 7.725818 TGCACAAATCAAGCATAAAAATGAA 57.274 28.000 0.00 0.00 32.55 2.57
2319 2343 7.725818 TTGCACAAATCAAGCATAAAAATGA 57.274 28.000 0.00 0.00 38.19 2.57
2322 2346 9.270640 ACTTATTGCACAAATCAAGCATAAAAA 57.729 25.926 0.00 0.00 38.19 1.94
2323 2347 8.830201 ACTTATTGCACAAATCAAGCATAAAA 57.170 26.923 0.00 0.00 38.19 1.52
2324 2348 9.920133 TTACTTATTGCACAAATCAAGCATAAA 57.080 25.926 0.00 0.00 38.19 1.40
2325 2349 9.571810 CTTACTTATTGCACAAATCAAGCATAA 57.428 29.630 0.00 0.00 38.19 1.90
2326 2350 8.190122 CCTTACTTATTGCACAAATCAAGCATA 58.810 33.333 0.00 0.00 38.19 3.14
2327 2351 7.037438 CCTTACTTATTGCACAAATCAAGCAT 58.963 34.615 0.00 0.00 38.19 3.79
2328 2352 6.389091 CCTTACTTATTGCACAAATCAAGCA 58.611 36.000 0.00 0.00 36.32 3.91
2329 2353 5.289434 GCCTTACTTATTGCACAAATCAAGC 59.711 40.000 0.00 0.00 0.00 4.01
2330 2354 5.807011 GGCCTTACTTATTGCACAAATCAAG 59.193 40.000 0.00 0.00 0.00 3.02
2331 2355 5.337169 GGGCCTTACTTATTGCACAAATCAA 60.337 40.000 0.84 0.00 0.00 2.57
2332 2356 4.159506 GGGCCTTACTTATTGCACAAATCA 59.840 41.667 0.84 0.00 0.00 2.57
2333 2357 4.159506 TGGGCCTTACTTATTGCACAAATC 59.840 41.667 4.53 0.00 33.47 2.17
2334 2358 4.093011 TGGGCCTTACTTATTGCACAAAT 58.907 39.130 4.53 0.00 33.47 2.32
2335 2359 3.501349 TGGGCCTTACTTATTGCACAAA 58.499 40.909 4.53 0.00 33.47 2.83
2336 2360 3.162147 TGGGCCTTACTTATTGCACAA 57.838 42.857 4.53 0.00 33.47 3.33
2337 2361 2.889170 TGGGCCTTACTTATTGCACA 57.111 45.000 4.53 0.00 34.12 4.57
2338 2362 3.555966 AGATGGGCCTTACTTATTGCAC 58.444 45.455 4.53 0.00 0.00 4.57
2339 2363 3.951563 AGATGGGCCTTACTTATTGCA 57.048 42.857 4.53 0.00 0.00 4.08
2340 2364 5.130350 TGTAAGATGGGCCTTACTTATTGC 58.870 41.667 4.53 1.99 45.28 3.56
2341 2365 6.772716 ACATGTAAGATGGGCCTTACTTATTG 59.227 38.462 4.53 14.12 45.28 1.90
2342 2366 6.772716 CACATGTAAGATGGGCCTTACTTATT 59.227 38.462 4.53 2.23 45.28 1.40
2343 2367 6.299141 CACATGTAAGATGGGCCTTACTTAT 58.701 40.000 4.53 0.00 45.28 1.73
2344 2368 5.680619 CACATGTAAGATGGGCCTTACTTA 58.319 41.667 4.53 9.09 45.28 2.24
2345 2369 4.526970 CACATGTAAGATGGGCCTTACTT 58.473 43.478 4.53 10.09 45.28 2.24
2346 2370 3.685550 GCACATGTAAGATGGGCCTTACT 60.686 47.826 4.53 0.00 45.28 2.24
2347 2371 2.618709 GCACATGTAAGATGGGCCTTAC 59.381 50.000 4.53 6.14 45.27 2.34
2348 2372 2.930950 GCACATGTAAGATGGGCCTTA 58.069 47.619 4.53 0.00 42.31 2.69
2349 2373 1.767759 GCACATGTAAGATGGGCCTT 58.232 50.000 4.53 0.00 42.31 4.35
2350 2374 3.502164 GCACATGTAAGATGGGCCT 57.498 52.632 4.53 0.00 42.31 5.19
2353 2377 5.640732 GTTACAAAGCACATGTAAGATGGG 58.359 41.667 0.00 0.00 42.24 4.00
2354 2378 5.323900 CGTTACAAAGCACATGTAAGATGG 58.676 41.667 0.00 0.00 42.24 3.51
2355 2379 5.121611 TCCGTTACAAAGCACATGTAAGATG 59.878 40.000 0.00 0.00 42.24 2.90
2356 2380 5.242434 TCCGTTACAAAGCACATGTAAGAT 58.758 37.500 0.00 0.00 42.24 2.40
2357 2381 4.633175 TCCGTTACAAAGCACATGTAAGA 58.367 39.130 0.00 3.09 42.24 2.10
2358 2382 4.688879 TCTCCGTTACAAAGCACATGTAAG 59.311 41.667 0.00 0.00 42.24 2.34
2369 2393 6.858993 GCAAAATATGTGTTCTCCGTTACAAA 59.141 34.615 0.00 0.00 0.00 2.83
2422 2446 9.430399 AGGCACATACCTAGTTAGTTTTATAGA 57.570 33.333 0.00 0.00 38.67 1.98
2425 2449 6.766467 GCAGGCACATACCTAGTTAGTTTTAT 59.234 38.462 0.00 0.00 38.26 1.40
2439 2463 2.098298 CAACGCGCAGGCACATAC 59.902 61.111 5.73 0.00 39.92 2.39
2495 2519 6.558771 TTGCATCAAGATTTATCCCGTATG 57.441 37.500 0.00 0.00 0.00 2.39
2496 2520 6.294176 GCTTTGCATCAAGATTTATCCCGTAT 60.294 38.462 2.23 0.00 0.00 3.06
2585 2622 8.464404 GCTGATTAATCATTGGCACATACATAT 58.536 33.333 18.26 0.00 36.02 1.78
2586 2623 7.666804 AGCTGATTAATCATTGGCACATACATA 59.333 33.333 22.79 0.00 36.02 2.29
2587 2624 6.492429 AGCTGATTAATCATTGGCACATACAT 59.508 34.615 22.79 5.07 36.02 2.29
2588 2625 5.829391 AGCTGATTAATCATTGGCACATACA 59.171 36.000 22.79 0.00 36.02 2.29
2646 2690 7.523709 CGGCCCAAAAGCTAATACATATCAATT 60.524 37.037 0.00 0.00 0.00 2.32
2649 2693 4.759693 CGGCCCAAAAGCTAATACATATCA 59.240 41.667 0.00 0.00 0.00 2.15
2665 2709 2.570415 TCAATAGTTTCACGGCCCAA 57.430 45.000 0.00 0.00 0.00 4.12
2670 2714 8.567948 AGCCAATAAATATCAATAGTTTCACGG 58.432 33.333 0.00 0.00 0.00 4.94
2702 2746 1.442148 GGTACCGGCCAGACATCTC 59.558 63.158 0.00 0.00 0.00 2.75
2736 2780 8.663771 AAATTCACGGTTCGTAAATAATGTTC 57.336 30.769 0.00 0.00 38.32 3.18
2740 2784 7.483691 GCAAGAAATTCACGGTTCGTAAATAAT 59.516 33.333 0.00 0.00 38.32 1.28
2747 2791 2.218603 AGCAAGAAATTCACGGTTCGT 58.781 42.857 0.00 0.00 42.36 3.85
2750 2794 6.811253 TTGTATAGCAAGAAATTCACGGTT 57.189 33.333 0.00 0.00 32.52 4.44
2762 2806 9.149225 GACCAGATCAATCTATTGTATAGCAAG 57.851 37.037 0.00 0.00 36.30 4.01
2772 2816 4.728860 ACCCCAAGACCAGATCAATCTATT 59.271 41.667 0.00 0.00 34.85 1.73
2777 2821 2.024941 GGAACCCCAAGACCAGATCAAT 60.025 50.000 0.00 0.00 0.00 2.57
2780 2824 0.107654 CGGAACCCCAAGACCAGATC 60.108 60.000 0.00 0.00 0.00 2.75
2788 2832 1.818674 CCAATCTTTCGGAACCCCAAG 59.181 52.381 0.00 0.00 0.00 3.61
2797 2864 5.393962 GTCTTCATCAAACCAATCTTTCGG 58.606 41.667 0.00 0.00 0.00 4.30
2800 2867 6.070656 TCTGGTCTTCATCAAACCAATCTTT 58.929 36.000 0.00 0.00 42.28 2.52
2838 2905 1.486310 CCTTCCATCTTCCACCGATGA 59.514 52.381 0.00 0.00 40.47 2.92
2861 2928 0.037697 TCTCCATCACCCGTTTGTCG 60.038 55.000 0.00 0.00 39.52 4.35
2868 2935 5.928839 CAGTATTAATTCTCTCCATCACCCG 59.071 44.000 0.00 0.00 0.00 5.28
2871 2938 8.200792 ACACTCAGTATTAATTCTCTCCATCAC 58.799 37.037 0.00 0.00 0.00 3.06
2892 2959 7.390718 ACAAACCTAATGTTCCATCTTACACTC 59.609 37.037 0.00 0.00 35.67 3.51
2893 2960 7.231467 ACAAACCTAATGTTCCATCTTACACT 58.769 34.615 0.00 0.00 35.67 3.55
2897 2964 7.827236 CCTGTACAAACCTAATGTTCCATCTTA 59.173 37.037 0.00 0.00 35.67 2.10
2908 2975 5.179452 AGCACATCCTGTACAAACCTAAT 57.821 39.130 0.00 0.00 0.00 1.73
2922 2989 1.021390 CCAACTCCGTGAGCACATCC 61.021 60.000 1.20 0.00 32.04 3.51
2927 2994 0.541063 TACCTCCAACTCCGTGAGCA 60.541 55.000 1.36 0.00 32.04 4.26
2932 2999 2.436911 ACAAGTTTACCTCCAACTCCGT 59.563 45.455 0.00 0.00 33.12 4.69
2933 3000 3.121738 ACAAGTTTACCTCCAACTCCG 57.878 47.619 0.00 0.00 33.12 4.63
2943 3010 4.024641 CACCCGTAACTCAACAAGTTTACC 60.025 45.833 0.00 0.00 46.26 2.85
2946 3013 2.946990 CCACCCGTAACTCAACAAGTTT 59.053 45.455 0.00 0.00 46.26 2.66
2954 3021 2.747177 AGATCATCCACCCGTAACTCA 58.253 47.619 0.00 0.00 0.00 3.41
2961 3028 2.035193 CACTGTCTAGATCATCCACCCG 59.965 54.545 0.00 0.00 0.00 5.28
2981 3048 3.708451 TCACTAGGTTCATCTAGGCACA 58.292 45.455 0.00 0.00 40.63 4.57
2985 3052 5.053145 GCACAATCACTAGGTTCATCTAGG 58.947 45.833 0.00 0.00 40.63 3.02
2995 3062 2.802816 GCCGATTAGCACAATCACTAGG 59.197 50.000 10.56 5.54 0.00 3.02
2999 3066 2.279741 TCAGCCGATTAGCACAATCAC 58.720 47.619 10.56 3.53 34.23 3.06
3015 3082 4.184629 TCTTCGAAAATCCTAGCTTCAGC 58.815 43.478 0.00 0.00 42.49 4.26
3041 3108 0.811616 AGGCATCTTAAGCTTCGCCG 60.812 55.000 0.00 0.00 44.34 6.46
3054 3121 1.070445 CCTGACATGGAGAGAGGCATC 59.930 57.143 0.00 0.00 0.00 3.91
3058 3128 0.829333 CCACCTGACATGGAGAGAGG 59.171 60.000 0.00 0.00 39.87 3.69
3066 3136 0.249120 TTAGGCGTCCACCTGACATG 59.751 55.000 0.00 0.00 44.71 3.21
3067 3137 1.204146 ATTAGGCGTCCACCTGACAT 58.796 50.000 0.00 0.00 44.71 3.06
3071 3141 2.093658 ACTACAATTAGGCGTCCACCTG 60.094 50.000 0.00 0.00 41.34 4.00
3072 3142 2.185387 ACTACAATTAGGCGTCCACCT 58.815 47.619 0.00 0.00 44.31 4.00
3085 3155 4.495422 CAAGCGACCAAGACTACTACAAT 58.505 43.478 0.00 0.00 0.00 2.71
3104 3174 1.101049 AACGGTGGACAAGTGGCAAG 61.101 55.000 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.