>input_sequence_59345
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----------------------------------------------------GGGTCCCTCTTCTTCGTCGTTGCAGCGG
CGCAGACTCCAAATGGCAAGGCCGGGCGGTATCAACACCTCCTCGTGGAGCCTCCCAGGCCCAGCCCTGCAAAAACTCGC
CAATCCCAGGAAACCATGCGCCTCCGGCTCACGGCCGAGACCTTTACATCCGCGAGGCAGCCACAAACACGCGGTCTCGG
CAGCATCCACCGGCCAAGGCGAGCAGCAACCTGCGCCCGCCGTCGCGGCGCCGCGGGCTCGGCCCGATGCCGACACGTTC
AGCGTCGAGTTCCTGACGCGCGACGGCTGCCGGCTCGGCATCTCACGGTACCCGGACTTCGCTTACAACGCACATGGCGG
CCGCGGCGTGGGCGCCGGGCGTGGCGCGAGCGGCACGGAGGAGGCGGATGACAAGGTACTCGTCGATTTTGACGTGTCGA
GCCTATACATCCCGGCGATGTCCGGCGCCACCACTAGGTTCCTAGGGCTGCCGCTGCCGCCGTTCCTCAAGATCGACATC
TTGCCCGAGGCTCTGCGCGGGAGCATCGATCGGACGACTGGTCAGGTAACCTTTGCACTGCCTCCTCT-----------C
GTCCTGCGCCCATTTGTTGTTACCACTTATCAGCCCAGACAACAAATTACTTTTTCGGGACCGACGACCGAGAGATTTGG
TAGCCTACTCTTGCCTGTGATCAGGGTATTTATTTATAACAAGTTCTTGCTTGGAATTTAAATGGTCGCAGAAAATGATC
ATGGCCTCTGCATGCATATGCACGTTTCAGGTCGACCTGAAGTTCAGGTCGAGGTTCTGTTTCTCGGTTGGGAGCATCTA
CCAAGCTCCGCCGTTGTTCGTCGACACAACACTGACGTCTGAGGAGTCCAGTGGAGCCATAAGACGTGGGACTGGCGAAA
GATTGGACGGTGGAGGGAGATGCAAGCTGGTCGGGGTGGCCGTCCTCAACCCCATCGATGACGTATTCATGAACACCTTC
CTCAACCTGCCAACCGAGTGCATTGCTTATTTGAACGCCACCATCTCCATCGCCAGCGCTACCTGATCGTGCCTGTTCCG
TGGTCTACAAATTTCGTGAAACACCTAAATCACACAAAGGAAGATCCTTGAGTACTTGTTGCTCGGCGAATAATTAATTG
TACGCATAATC---------------------------------------------------------------------
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>chr6B_1_TraesCS6B01G268000
ACGGGTGGAGCACGACGACGCTCACCGGAGCGGCATGGCGACATGTCGAGGGCGAGGTGCTGGCCGGAGCAGCGTGGGGG
CAGGTCAAAAGGCTGGAGAAATGTGGAGGTAGGTAGATGCAGACTCTCGTCAGAGCAACACCGGGGCAGGTGGAGGCGAG
GAGGTCGCCAGAGCAGTGCAGGGCGAGGTGGATGTGGCCGCTCGTCGGAAATGCACGGGGCAGATGGAGGCGGACGTCGT
CGAAGCAGAGCAGGTCGTGTTTGATTTGGGGGAAAACTGAGTGAAAGAGATAAGGAAGAAGGAAGATGGATGCGGTTTGC
AAGGCCCATAAGGCCTTGTTTGGTTTCGAGGAATCCCCTAGGGATCCCCTGTCTAATCCCTGGGGAGGGAGCCCACGGGC
TAAACTTGACCCGGGCAAGCCGTCGACACATTTGGTTGTGCCCCTTGACAGGGTTTGTCAGCCCTTTCCACCTCATTTCC
CTGGGCGTTAAATCCACACCTCCTGACGTCGGGGAGGAAACCCACGTCTCTCTTGCGACACCGAATCGTGCGACCGAGCA
TCTCCCTGGCGACCTCCTG--CTTTACCTGGCGATCTCCTCCGCCTCCCC----CGCGATCAGGCCCCTCTGCTTCCTAC
GACCCCCC-TCATTACGAGAGATGTTTGAAATTATCTGGAATTTGATTTCTAATTTCGGATTGTTTTGGTTGCAGGGGTT
CCTCCCCTTGTTGCCAAGA----CAGAAAGTTCTCCCATGGTGGACGGGGGGACCGTATGTGTTCGTGAAATTGCCTCCC
TAGGGGATTCTCGCCCTGGATTTTCCTTACCTTACTACCAAATAAAGCCTAAATGAGGAGGAGTGGACGTGGCTGGCTCA
TAGGATCCAACGTGGCGAACATGAACGTTTTCCTTTCGAATACTACACTTTTACGTATACTTTGCAACCAAACAGAGCCT
AGG-GATAAGGTTTCCAAGGTCCATCGCACAGCCACAACTGCAAGCCGCACCGGGTCCCTCTTCTTCGTCGTTGCAGCGG
CGCAGACTCCAAATGGCAAGGCCGGGCGGTATCAACACCTCCTCGTGGAGCCTCCCAGGCCCAGCCCTGCAAAAACTCGC
CAATCCCAGGAAACCATGCGCCTCCGGCTCACGGCCGAGACCTTTACATCCGCGAGGCAGCCACAAACACGCGGTCTCGG
CAGCATCCACCGGCCAAGGCGAGCAGCAACCTGCGCCCGCCGTCGCGGCGCCGCGGGCTCGGCCCGATGCCGACACGTTC
AGCGTCGAGTTCCTGACGCGCGACGGCTGCCGGCTCGGCATCTCACGGTACCCGGACTTCGCTTACAACGCACATGGCGG
CCGCGGCGTGGGCGCCGGGCGTGGCGCGAGCGGCACGGAGGAGGCGGATGACAAGGTACTCGTCGATTTTGACGTGTCGA
GCCTATACATCCCGGCGATGTCCGGCGCCACCACTAGGTTCCTAGGGCTGCCGCTGCCGCCGTTCCTCAAGATCGACATC
TTGCCCGAGGCTCTGCGCGGGAGCATCGATCGGACGACTGGTCAGGTAACCTTTGCACTGCCTCCTCT-----------C
GTCCTGCGCCCATTTGTTGTTACCACTTATCAGCCCAGACAACAAATTACTTTTTCGGGACCGACGACCGAGAGATTTGG
TAGCCTACTCTTGCCTGTGATCAGGGTATTTATTTATAACAAGTTCTTGCTTGGAATTTAAATGGTCGCAGAAAATGATC
ATGGCCTCTGCATGCATATGCACGTTTCAGGTCGACCTGAAGTTCAGGTCGAGGTTCTGTTTCTCGGTTGGGAGCATCTA
CCAAGCTCCGCCGTTGTTCGTCGACACAACACTGACGTCTGAGGAGTCCAGTGGAGCCATAAGACGTGGGACTGGCGAAA
GATTGGACGGTGGAGGGAGATGCAAGCTGGTCGGGGTGGCCGTCCTCAACCCCATCGATGACGTATTCATGAACACCTTC
CTCAACCTGCCAACCGAGTGCATTGCTTATTTGAACGCCACCATCTCCATCGCCAGCGCTACCTGATCGTGCCTGTTCCG
TGGTCTACAAATTTCGTGAAACACCTAAATCACACAAAGGAAGATCCTTGAGTACTTGTTGCTCGGCGAATAATTAATTG
TACGCATAATCTAATTTCTTGTATATAAATTATTAAGTTTTGCTAAAGCACATCTAGATGTGCCGTAAGTATTACACATC
TAAGTCCTATGTCATTGATCTTATGCGGAGATTTGTGTGGATATTTTCTTTTTTCTTTTCTTTTTCATTCTTATGCGGAG
ATTTGTGTGGGTATTTTCTTTTTCATTTTTATGCTTGATTTGTGCAATAAGTAAGGCCCATCTTACATGTGCTTTGTAAC
GGAGAACACATATTTTGCACGTACTCGTGATTTATCTACCATTTTTCTATAAAACTAACTAGGTATGTGCCTGCGCGTTG
CCACAGGGGCCAAATGTTTTTTAACACAATAAAAAGCCCATACGGGATAAATCTTGATGCAAAGCAAACAGACAAAATAA
GATTATGTTTTGGTTACGATGAAGTATGAA-------------TCTTAAACTAATAACAAAATAT-------GTATGTGC
CAATGATTAATCAGCTTTATTGGGTAACCAAATACTACTATAAGAGATTAATTGATATGTATTAGCTTTTGGGCCGTGAA
ACTATTGATATTTATTGGCTTACCAGAGATGTCTGGCCGGTACCGGGTTTACCATAAGAGAACATTATTTACGAACCGTG
AATTTCTTGCTATACAATAGATTGATCTGGTCTT-----------------------GGGGTTCCGAAAGATTGGTTTGA
TGAAGACCAGAAGAGAATGAAAATTCATCGGTGGAAGATGGAAGGTTCGACAAACGGGTGATGGAGAGAATTAATACTGA
GTGTAAGATGGAACATTAGGTTTGTACAGGATGTGCTCACGGAGTTGGAGGTAAACTTGTTGAGTTACGGGTGGATGATC
TAGACAGTGTGCCTAGATGAACCTAGTGATTGTGCTAATCGGCTGAAGCTAGGATTTTCGAAGATCTCGGCGAAGCTTAA
G---ATGCCTCTCTCCATGTCAGGTGGACGCCTAATTGTAGTAGTCTTGGTCGCTTGCCACTTGTCCACCGTTTGGTCTC
ATGCCCCAATCCATCAC
>chr2B_325
CCCCTT--------------------------------------------------------------------------
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----------AGGCCTCGTTTGGTTTCGGGGAATCCCCCAGGGATCCCC-GTCTAATCCCTGGGGAGGGAGCCCACGGGC
TAAACCTGACCCGGGCAGGCCACCGACGCATTTGATTGTGGCCCTCGACACGGTTTGTCAGCCTTTTCCACCTCATTTCC
CTGGGCGTTAAATACACACCTCCTCACGTCGGGGAGGAAACCCACATTTCTCTTGCGACACCGAATCGTGCGACCGAGCA
TCTCCCTGGCGACCTCCTG--CTCTACTAGA-GATCTCCTCCGCCTCCCTCCAGCGCGACCAGGCCCCTCTGCTTCCTGC
GACCCACCCTCATCATGAGAGATGTTCAAATTTAACTAGAATTTGATTTCTAATTTCGGATTGTTTTGGTTGCAGGGGTT
CCTCCCCTTATTGCCAAATGGGGCAGAAAGTTCTCCCGTGGTGGACGGGGGGATCCTATGTGTTTGTGAAATTGCCCCCC
TAGGGGATTCTCGCCCTGGATTTTCCTTACCTTACTACCAAACAAAGCCT------------------------------
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>chr4B_331
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----------AGACCTTGTTCGGTTTCGGAGAATCCCCCTAGGATCCCC-GTCTAATCCCTGGGGAGGGAGCCCATGGGC
TAAACCTGACCCGGGCAGGTCGCCGGCGCATTTGGTTGTGCCCCTCGACAGGGTTTGTCAGCCCTATCCACCTCATTTCC
CTGGGCGTTAAATCCACACCTCCTGACATCGGTGAGGAAACCCACGTCTCTCTTTCGACACCGAAGCCTCTGATCAAGCA
TCTCCCTAGCGACCTCCTCTACTCTACCTCACGACGTCCTCCGCCTCCGTCCAGCGCGACCACATCCCTCTACTTCCTGC
GACCCTCC-TCATCACGAGAGATG-TTGAACTTATCTGGAATTTAATTTCTAATTTCGGGTTGTGTTGGTTGCAGGGGCT
CCTCCCCTTGTTGCCAAATGGGCCAGAAAGTTCTCTCGTGGTGGACGCGGGGATCCCATGTGTTCATGGAATTACCCCCC
TAGGGGATTCTCGCCCTGGATTTTCCTTTCCTTACTACCAAACAAAGCCT------------------------------
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>chr6D_903
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---------------------------------TTTCGAATACTACAGTTTTACATATACTTTGCATCCAAACAGAGCCT
AAGAGATAAGGTTTCCGATGTCCATCGCACAGCCACAACTGCAAGCCGCACCTGGTCCCTCTTCTTCGTCGTTGCAGCGG
CGCGGACTCCAAATGGCAAGGCTGGGCGGTATCAACACCTCCTCGTGGAGCCTCCCAGGCCCAGCCCTGCAAAAACTCGC
CAATCCCAGGAAACCATGCGCCTCCGGCTCACGGCCGAGACCTTTACATTCGCGACGCAGCGACAAGCACGCGGTCTCGG
CAGCATCCACCGGCCAAGGCGAGCAGCAACCTGCGCCCACCGTCGCGGCGCCGCGGGCTCGGCCCGATGCCGACACGATC
AGCGTCGAGTTCCTGACGCGCGACGGCTGCCGGCTCGGCATCTCCCGGTACCCGGACTTCGCTTACAATGCACAGGGCGG
CCGCGGGGTGGGCGCCGGGCGTGGCGCGAGCGGCACGGCGGAGGCGGATGGCACGGTGCTCGTCGATTTTGACGTGTCGA
GCCTGTACATCCCGGCGATGTCCGGCGCCACCACTAGGTTCCTAGGACTGCCGCTGCCGCCGTTCCTCAAGATCGACATC
TTGCCCGAGGCTCTGCGCGGGAGCATCGATCGGACGACTGGCCAGGTAAGCTTTGCACTACCTCCTCTCTGCATCCTGCC
GTCCTGCGTCCACGTGTTGTTACCACTTATCAGCCCAGATAAGAGATTACTTTTTCTGGAGCGACGACCGAGAGATTTGG
TAG-----TCTTGCCTGTGATCAGGGTATTTATTTAGAACAAGTTCCTGCTTGGAATTTAAATGGTCACAGAAAATGATC
ATGAACTATCCATGCGTACGCACGTTTCAGGTCGAGCTGAAGTTCAGGTCGAGGTTCTGTTTCTCGGTTGGGAGCATCTA
CCAAGCTCCGCCGTTGTTTGTCGACACAACACTGACGTCTGAGGAGTCCAGTGGAGCCATAAGACGTGGAACTGGCGAAA
GATTGGACGGTGGAGGGAGATGCAAGCTGGTCGGGGTGGCCGTCCTCGACCCCATCGATGACGTATTCATGAACACCTTC
CTCAACCTGCCAACCGAGTGCATTGCTTATTTGAACGCCACCATCTCCATCGCCAGCGCCACCTGATCGTGCCTGTTTCG
TGCTCTACAAATTTCGTGAAACACCTAAATCACACAAAGGAAGATCCTCGAGTCCTTGTTGCTCGGCGAATAATTAATTA
TACGCATAATCTAAGTTCTTGTATATAAATTT------------------------------------------------
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--------------------------------------------------------------TTACATGTGCGTTGTAAC
GGAGAACACATATTTTGCACCTAGTCGTGATTTATCTACCATTTTCCT-TAAAACTAACTAGATATGTGCCTGTGCGTTA
CCATGGAGATCAAATA-TTTTTAACACAATAAAAGGACTGTACGGGATAAATCTTGATGCAAAGCAAATAGACAAAATAA
GATTATGTTTTGGTTACCATGAAGTACAAATTTTGCAACTGTTTCTTAAACTAGGTATGTTTCTAAAAAAAGGTATGTGC
CAATGATTAATCTGCTTTATTGGGTTACCAAA---TACTACAAGAGATTGATCGATATGTATTAGCTTCTGGGTCGTGAA
TTTATTGATATTTATTGGCTTGCCAAAGATGTCTAACCGGTACCAGGTTTACCATAAGAAAACGTTATTTGCGGACCATG
AATTTATTGCTATACCATAGTTTAATCTGGTTTTGGGTTTTTTTATATCTGGTTTTGGGGGTTACGGAAGATTGGTTTGA
TGAAAACCAGAAGAGAATGAAAATCCATCGGTGGAAGATGGAAGGTTTGACAAAGGGATGATGGGGAGAATTAATACTCT
GTGAAAGATGGAACCTTAGGTTTGTACAAGATGCGCTCGGGGAGTTGGAAGT-AACTTGTCGAGTTAGGGGTGGATGATC
TAGACAGGGTGTCTAGATGAATCTATTGATTGTGCTAATCGCCTGAAGCTAGGATTTTCGAAGATCTTGGCGAAGCTTAA
TATTATGTCTCTCTCTTTGTTGGGTGGACGCCTATTTGTAGTAGTCTTGGTCGATTGCCACTTGCCCACCGTTTGGTCTC
ATGCCTCAATCCGTCAC
>chr6A_921
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---------------------------------------------------TACATATACTCTGCATCCAAATAGAGCCT
AAGAGATAAGGTTTCCGAGGTCCATCGCACAGCCACAACTGCAAGCCGCACCGGGTCCCTCTTCTTCATCGCTTCAGCTG
CGCAGACTCCAAATGGCAAAGCTGGGCGGTATCAACACCTCCGCGTGGAGCCTCCGAGGCCCAGCCCTGCAAAAACTCGC
CAATCCCAGGAAACCATGCGCCTCCGGCTCACGGCCGAGACCTTTACATCCGCGACGCAGCGACAAGCACGCGGTCTCGG
CAGCATCCACCGGCCAAGGCGAGCAGCAACCTGCCCCTGCCGTCGCGTCGCCGCGGGCTCGGCCCGATGCCGACACGTTC
AGCGTCGAGTTCCTGACGCGCGACGGCTGCCGGCTGGGCATCTCCCGGTACCCGGACTTCGCTTACAACGCCCATGGCGG
CCGCGGCGTGGGAGCCGGGCGTGGCGCGAGCGGCACGGCGGAGGCGGATGGCACGGTGCTCGTCGATTTCGACGTGTCGA
GCCTGTACATCCCGGCAATGTCTGGCGCCACCACTAGGTTCCTAGGGCTGCCGCTGCCGCCATTCCTCAAGATCGACATC
TTGCCCGAGGCTCTGCGCGGGAGCATTGATCGGACGACTGGTCAGGTAAGCTTTGCACTGCCTCCTCTCTGCACCCTGCC
GTCCTGCGCCCATGTGTTGTTACCACTTATCAGCCCAGATAAGAGATTACTTTTTCGGGAGCGACGACCAAGAGATTTTT
AGTAGTTTATA--CGTGTGATCAGAGTATTTGGAC----CAAGTTCTTGCTTGGCATTTAAATGGTCACAGAAAATGATC
ATGACCTCTGCATGCGTATGCACGTTTCAGGTCGACCTGAAGTTCAGGTCGAGGTTCTGTTTCTCGGTTGGGAGCATCTA
CCAAGCTCCGCCGTTGTTCGTCGACACAACACTGACGTCTGAGGAGTCCAGTGGAGCCATAAGACGCGGAACTGGCGAAA
GATTGGACGGCGGAGGGAGATGCAAGCTGGTCGGGGTGGCCGTCCTCGACCCCATCGATGATGTATTCATGAACACCTTC
CTCAACCTGCCAACCGAGTGCATTGCTTATTTGAACGCTACCATCTCCATCGCCAGCGCCTCCTGATCATGCCTGTTTCG
TGGTCTACAAATTTCGTGAAACACCTAAATCACACAAAGGAAGATCCTTGAGTCCTTGTTGCTCGGGGAATAATTAATTG
TACGCATAATCTAAGTTCTTGTATATAAATTA------------------------------------------------
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>SNPs
S-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS------------------S---------S----------S------------------------------
-----S-----------S----S----S-----------------S----------------------------------
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-----------------------S------S------------------S---------S------------------S-
-----S-------S----------------S-------------------------------------------------
-----------------SS------------------S---------------S-S--------------------S---
------------------------------------------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S------S-----------S-------------
-S--------------S---------------------------------------------------------------
----------------------S---------------------------------------------------------
-------------------------------------------------------S-----S----S-------------
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--------------------------------------------S-----------------------------------
--------------------------------------S-----------S--S---S----------------------
----S---------------------------------------------------------------------------
-------------------------------------------------S------------------------------
-------------S-------------------------S--S-S---------------S-------------------
---SS-SS----------------------------S------------------------------S------------
---S-----------S----------------------------------------------------------------
---------------------------------------------------------------------S----------
-----------------------------------------------S--------------------------------
-----------------------------------------------------------S-----------------S--
-----------------------------------------------------S--------------------------
--------------S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S-------
--------------------S--S---------------------S--S-------------S----------S-----S
---SS-S-SS-----SS-----------------S-S-SS----------------------------S-----------
-----------------S--------SS-------------------------SSS-SSSSSSSS---------------
------------S------------S------SSS-----S--------S--S---------------S----S------
SS-------------------S---S--------SS--------S--------------S---S------S--S---S--
-----S---------S----S--S-------S-------------------------------S--S-------------
----S-------------------S----------------------S------S--S------S-------------SS
---S----------S-------------S----S----SS---------S--S-------S------S------------
-------S---S---------S---S---------------S-------------------------S------------
S------S-------SS---SS------------S------------------S----------S---------------
-----S------S----
>forward_888
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--------------------------------------------------------------------GTGGCTGGCTCA
TAGGATCC------------------------------------------------------------------------
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>reverse_2928
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-----------------------------------------------CGACAAACGGGTGATGGAGA-------------
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