Multiple sequence alignment - TraesCS6B01G254700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G254700 chr6B 100.000 2381 0 0 1 2381 457876615 457878995 0.000000e+00 4397
1 TraesCS6B01G254700 chr6D 91.982 1559 71 19 865 2381 293319761 293321307 0.000000e+00 2137
2 TraesCS6B01G254700 chr6D 84.737 380 34 11 54 423 293318338 293318703 2.250000e-95 359
3 TraesCS6B01G254700 chr6A 91.738 1525 90 19 869 2381 427448028 427446528 0.000000e+00 2085
4 TraesCS6B01G254700 chr6A 85.185 378 34 13 54 423 427449564 427449201 3.740000e-98 368


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G254700 chr6B 457876615 457878995 2380 False 4397.0 4397 100.0000 1 2381 1 chr6B.!!$F1 2380
1 TraesCS6B01G254700 chr6D 293318338 293321307 2969 False 1248.0 2137 88.3595 54 2381 2 chr6D.!!$F1 2327
2 TraesCS6B01G254700 chr6A 427446528 427449564 3036 True 1226.5 2085 88.4615 54 2381 2 chr6A.!!$R1 2327

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
734 1603 0.179153 GGCAACGTCGTAGGAGGTAC 60.179 60.0 10.83 6.87 40.19 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1675 2584 2.093216 GCATCAGCTCGTTCCCAAG 58.907 57.895 0.0 0.0 37.91 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.464157 AGCTACCTCAACTGCAGTTC 57.536 50.000 28.97 15.72 35.83 3.01
20 21 1.974236 AGCTACCTCAACTGCAGTTCT 59.026 47.619 28.97 17.71 35.83 3.01
21 22 3.165875 AGCTACCTCAACTGCAGTTCTA 58.834 45.455 28.97 18.41 35.83 2.10
22 23 3.772025 AGCTACCTCAACTGCAGTTCTAT 59.228 43.478 28.97 16.51 35.83 1.98
23 24 4.116238 GCTACCTCAACTGCAGTTCTATC 58.884 47.826 28.97 10.78 35.83 2.08
24 25 4.382040 GCTACCTCAACTGCAGTTCTATCA 60.382 45.833 28.97 13.29 35.83 2.15
25 26 4.199432 ACCTCAACTGCAGTTCTATCAG 57.801 45.455 28.97 16.59 35.83 2.90
26 27 3.834813 ACCTCAACTGCAGTTCTATCAGA 59.165 43.478 28.97 19.71 35.83 3.27
27 28 4.284490 ACCTCAACTGCAGTTCTATCAGAA 59.716 41.667 28.97 6.69 35.83 3.02
41 42 7.404671 TTCTATCAGAACAGCTGTATGTACA 57.595 36.000 22.01 7.02 45.14 2.90
42 43 7.588497 TCTATCAGAACAGCTGTATGTACAT 57.412 36.000 22.01 13.93 45.14 2.29
43 44 7.428826 TCTATCAGAACAGCTGTATGTACATG 58.571 38.462 22.01 11.00 45.14 3.21
44 45 5.405935 TCAGAACAGCTGTATGTACATGT 57.594 39.130 22.01 2.69 45.14 3.21
45 46 5.410924 TCAGAACAGCTGTATGTACATGTC 58.589 41.667 22.01 10.55 45.14 3.06
46 47 5.047377 TCAGAACAGCTGTATGTACATGTCA 60.047 40.000 22.01 15.11 45.14 3.58
47 48 5.290400 CAGAACAGCTGTATGTACATGTCAG 59.710 44.000 22.01 25.24 39.85 3.51
48 49 3.525537 ACAGCTGTATGTACATGTCAGC 58.474 45.455 34.71 34.71 43.43 4.26
50 51 3.801050 CAGCTGTATGTACATGTCAGCTC 59.199 47.826 37.91 24.57 46.50 4.09
51 52 3.126831 GCTGTATGTACATGTCAGCTCC 58.873 50.000 34.54 20.60 41.77 4.70
52 53 3.430790 GCTGTATGTACATGTCAGCTCCA 60.431 47.826 34.54 11.19 41.77 3.86
80 81 2.461695 AGACCACTAGCACAGTAGCAT 58.538 47.619 0.00 0.00 34.98 3.79
87 88 3.708631 ACTAGCACAGTAGCATTCTCCAT 59.291 43.478 0.00 0.00 34.98 3.41
106 107 6.013898 TCTCCATTCTCCAGCATTCTATAAGG 60.014 42.308 0.00 0.00 0.00 2.69
107 108 4.699257 CCATTCTCCAGCATTCTATAAGGC 59.301 45.833 0.00 0.00 42.66 4.35
131 132 3.709653 TCTAGTGCTTAATCCCATCCGTT 59.290 43.478 0.00 0.00 0.00 4.44
132 133 2.919228 AGTGCTTAATCCCATCCGTTC 58.081 47.619 0.00 0.00 0.00 3.95
194 196 2.609747 AGGTCTGCAGTAAACTCTCCA 58.390 47.619 14.67 0.00 0.00 3.86
198 200 3.055819 GTCTGCAGTAAACTCTCCATGGA 60.056 47.826 15.27 15.27 0.00 3.41
253 264 5.990996 TGAAAAATTGTCCAATGCTCCTTTC 59.009 36.000 0.00 0.00 0.00 2.62
264 275 2.745968 TGCTCCTTTCTGTTGGGTTTT 58.254 42.857 0.00 0.00 0.00 2.43
265 276 2.693074 TGCTCCTTTCTGTTGGGTTTTC 59.307 45.455 0.00 0.00 0.00 2.29
267 278 3.384789 GCTCCTTTCTGTTGGGTTTTCTT 59.615 43.478 0.00 0.00 0.00 2.52
268 279 4.141937 GCTCCTTTCTGTTGGGTTTTCTTT 60.142 41.667 0.00 0.00 0.00 2.52
269 280 5.337578 TCCTTTCTGTTGGGTTTTCTTTG 57.662 39.130 0.00 0.00 0.00 2.77
270 281 3.871006 CCTTTCTGTTGGGTTTTCTTTGC 59.129 43.478 0.00 0.00 0.00 3.68
271 282 2.861462 TCTGTTGGGTTTTCTTTGCG 57.139 45.000 0.00 0.00 0.00 4.85
272 283 1.407258 TCTGTTGGGTTTTCTTTGCGG 59.593 47.619 0.00 0.00 0.00 5.69
273 284 1.136110 CTGTTGGGTTTTCTTTGCGGT 59.864 47.619 0.00 0.00 0.00 5.68
274 285 1.550976 TGTTGGGTTTTCTTTGCGGTT 59.449 42.857 0.00 0.00 0.00 4.44
275 286 2.028020 TGTTGGGTTTTCTTTGCGGTTT 60.028 40.909 0.00 0.00 0.00 3.27
276 287 3.194968 TGTTGGGTTTTCTTTGCGGTTTA 59.805 39.130 0.00 0.00 0.00 2.01
277 288 4.182339 GTTGGGTTTTCTTTGCGGTTTAA 58.818 39.130 0.00 0.00 0.00 1.52
278 289 3.783191 TGGGTTTTCTTTGCGGTTTAAC 58.217 40.909 0.00 0.00 0.00 2.01
279 290 3.125316 GGGTTTTCTTTGCGGTTTAACC 58.875 45.455 3.64 3.64 34.30 2.85
280 291 3.181473 GGGTTTTCTTTGCGGTTTAACCT 60.181 43.478 12.66 0.00 35.66 3.50
283 294 5.220510 GGTTTTCTTTGCGGTTTAACCTTTG 60.221 40.000 12.66 0.00 35.66 2.77
288 299 1.034356 GCGGTTTAACCTTTGGTGGT 58.966 50.000 12.66 0.00 43.11 4.16
295 306 5.239351 GTTTAACCTTTGGTGGTGTTTTGT 58.761 37.500 0.00 0.00 40.73 2.83
300 311 1.251527 TTGGTGGTGTTTTGTGCCGT 61.252 50.000 0.00 0.00 0.00 5.68
312 323 4.418013 TTTGTGCCGTTGTAGATTCATG 57.582 40.909 0.00 0.00 0.00 3.07
318 329 3.309954 GCCGTTGTAGATTCATGTCCTTC 59.690 47.826 0.00 0.00 0.00 3.46
337 348 4.023365 CCTTCTCTTGGAGCTGTTTTCTTG 60.023 45.833 0.00 0.00 0.00 3.02
342 357 5.003804 TCTTGGAGCTGTTTTCTTGGTATC 58.996 41.667 0.00 0.00 0.00 2.24
355 370 6.627087 TTCTTGGTATCTCTCAGTGGAAAT 57.373 37.500 0.00 0.00 0.00 2.17
359 374 5.918608 TGGTATCTCTCAGTGGAAATAAGC 58.081 41.667 0.00 0.00 0.00 3.09
362 377 6.995091 GGTATCTCTCAGTGGAAATAAGCAAT 59.005 38.462 0.00 0.00 0.00 3.56
368 383 5.713025 TCAGTGGAAATAAGCAATTGAAGC 58.287 37.500 10.34 0.00 0.00 3.86
374 389 5.460091 GGAAATAAGCAATTGAAGCGGAATC 59.540 40.000 10.34 0.00 37.01 2.52
378 393 3.466836 AGCAATTGAAGCGGAATCGATA 58.533 40.909 10.34 0.00 39.00 2.92
388 403 6.202188 TGAAGCGGAATCGATAAAAATAGACC 59.798 38.462 0.00 0.00 39.00 3.85
419 434 9.415544 GTCTCTAATGTGATTTTTCTGCAATTT 57.584 29.630 0.00 0.00 0.00 1.82
423 438 9.801714 CTAATGTGATTTTTCTGCAATTTGTTC 57.198 29.630 0.00 0.00 0.00 3.18
424 439 7.789273 ATGTGATTTTTCTGCAATTTGTTCA 57.211 28.000 0.00 0.00 0.00 3.18
426 441 8.037382 TGTGATTTTTCTGCAATTTGTTCAAA 57.963 26.923 0.44 0.44 0.00 2.69
427 442 8.675504 TGTGATTTTTCTGCAATTTGTTCAAAT 58.324 25.926 5.12 5.12 0.00 2.32
430 445 9.161684 GATTTTTCTGCAATTTGTTCAAATCAC 57.838 29.630 10.55 7.19 31.36 3.06
431 446 6.601741 TTTCTGCAATTTGTTCAAATCACC 57.398 33.333 10.55 4.36 0.00 4.02
440 455 6.924913 TTTGTTCAAATCACCATCCCATAA 57.075 33.333 0.00 0.00 0.00 1.90
441 456 6.924913 TTGTTCAAATCACCATCCCATAAA 57.075 33.333 0.00 0.00 0.00 1.40
442 457 6.924913 TGTTCAAATCACCATCCCATAAAA 57.075 33.333 0.00 0.00 0.00 1.52
443 458 7.493499 TGTTCAAATCACCATCCCATAAAAT 57.507 32.000 0.00 0.00 0.00 1.82
444 459 8.601047 TGTTCAAATCACCATCCCATAAAATA 57.399 30.769 0.00 0.00 0.00 1.40
445 460 9.040259 TGTTCAAATCACCATCCCATAAAATAA 57.960 29.630 0.00 0.00 0.00 1.40
446 461 9.313118 GTTCAAATCACCATCCCATAAAATAAC 57.687 33.333 0.00 0.00 0.00 1.89
449 464 8.694540 CAAATCACCATCCCATAAAATAACTGA 58.305 33.333 0.00 0.00 0.00 3.41
451 466 5.820423 TCACCATCCCATAAAATAACTGACG 59.180 40.000 0.00 0.00 0.00 4.35
454 503 5.820423 CCATCCCATAAAATAACTGACGTCA 59.180 40.000 18.88 18.88 0.00 4.35
469 518 3.445805 TGACGTCATATCTTGTGCACCTA 59.554 43.478 15.76 1.01 0.00 3.08
470 519 4.099419 TGACGTCATATCTTGTGCACCTAT 59.901 41.667 15.76 7.61 0.00 2.57
471 520 4.371786 ACGTCATATCTTGTGCACCTATG 58.628 43.478 15.69 15.04 0.00 2.23
472 521 4.141937 ACGTCATATCTTGTGCACCTATGT 60.142 41.667 15.69 0.46 0.00 2.29
473 522 5.068591 ACGTCATATCTTGTGCACCTATGTA 59.931 40.000 15.69 1.51 0.00 2.29
474 523 5.631096 CGTCATATCTTGTGCACCTATGTAG 59.369 44.000 15.69 10.24 0.00 2.74
475 524 6.516718 GTCATATCTTGTGCACCTATGTAGT 58.483 40.000 15.69 0.00 0.00 2.73
476 525 7.521585 CGTCATATCTTGTGCACCTATGTAGTA 60.522 40.741 15.69 0.00 0.00 1.82
477 526 7.810282 GTCATATCTTGTGCACCTATGTAGTAG 59.190 40.741 15.69 0.00 0.00 2.57
478 527 7.505923 TCATATCTTGTGCACCTATGTAGTAGT 59.494 37.037 15.69 0.00 0.00 2.73
479 528 8.793592 CATATCTTGTGCACCTATGTAGTAGTA 58.206 37.037 15.69 0.00 0.00 1.82
480 529 6.694877 TCTTGTGCACCTATGTAGTAGTAG 57.305 41.667 15.69 0.00 0.00 2.57
483 532 7.498239 TCTTGTGCACCTATGTAGTAGTAGTAG 59.502 40.741 15.69 0.00 0.00 2.57
554 605 7.155328 AGAAAGGTAAATAGTATCATCGGCTG 58.845 38.462 0.00 0.00 0.00 4.85
565 616 3.627395 TCATCGGCTGTCCACTTATTT 57.373 42.857 0.00 0.00 0.00 1.40
589 652 6.857777 TTTGTTTAGGTGCCAAATGATTTG 57.142 33.333 10.84 10.84 40.32 2.32
595 658 5.151297 AGGTGCCAAATGATTTGTTTAGG 57.849 39.130 15.93 2.38 38.98 2.69
609 672 9.877178 TGATTTGTTTAGGTAATTGTTTGTTGT 57.123 25.926 0.00 0.00 0.00 3.32
648 729 3.382865 TCTGATTGAGATTCGGGAGACAG 59.617 47.826 0.00 0.00 39.59 3.51
660 741 4.736473 TCGGGAGACAGACATCCAATATA 58.264 43.478 0.00 0.00 37.33 0.86
664 745 6.127869 CGGGAGACAGACATCCAATATAGTAG 60.128 46.154 0.00 0.00 37.33 2.57
666 747 7.233757 GGGAGACAGACATCCAATATAGTAGTT 59.766 40.741 0.00 0.00 37.33 2.24
667 748 8.085296 GGAGACAGACATCCAATATAGTAGTTG 58.915 40.741 0.00 0.00 35.54 3.16
669 750 6.216569 ACAGACATCCAATATAGTAGTTGCG 58.783 40.000 0.00 0.00 0.00 4.85
672 791 6.211584 AGACATCCAATATAGTAGTTGCGGAT 59.788 38.462 0.00 0.00 0.00 4.18
674 793 6.874134 ACATCCAATATAGTAGTTGCGGATTC 59.126 38.462 0.00 0.00 0.00 2.52
679 798 9.088512 CCAATATAGTAGTTGCGGATTCTAATC 57.911 37.037 0.00 0.00 34.66 1.75
718 1587 3.888930 CCAAAGAAACAAGGTAAGAGGCA 59.111 43.478 0.00 0.00 0.00 4.75
725 1594 0.677842 AAGGTAAGAGGCAACGTCGT 59.322 50.000 0.00 0.00 46.39 4.34
728 1597 1.468736 GGTAAGAGGCAACGTCGTAGG 60.469 57.143 0.00 0.00 46.39 3.18
731 1600 1.139095 GAGGCAACGTCGTAGGAGG 59.861 63.158 0.00 3.70 46.39 4.30
732 1601 1.593296 GAGGCAACGTCGTAGGAGGT 61.593 60.000 0.00 5.00 42.72 3.85
733 1602 0.322816 AGGCAACGTCGTAGGAGGTA 60.323 55.000 10.83 0.00 40.19 3.08
734 1603 0.179153 GGCAACGTCGTAGGAGGTAC 60.179 60.000 10.83 6.87 40.19 3.34
735 1604 4.847365 AGGCAACGTCGTAGGAGGTACT 62.847 54.545 10.83 7.46 40.19 2.73
779 1648 9.856488 ACGTATATTTATAGCAATGAGTGTAGG 57.144 33.333 0.00 0.00 0.00 3.18
780 1649 9.856488 CGTATATTTATAGCAATGAGTGTAGGT 57.144 33.333 0.00 0.00 0.00 3.08
782 1651 6.867662 ATTTATAGCAATGAGTGTAGGTGC 57.132 37.500 0.00 0.00 35.41 5.01
783 1652 2.293677 TAGCAATGAGTGTAGGTGCG 57.706 50.000 0.00 0.00 40.17 5.34
784 1653 0.321671 AGCAATGAGTGTAGGTGCGT 59.678 50.000 0.00 0.00 40.17 5.24
785 1654 1.548719 AGCAATGAGTGTAGGTGCGTA 59.451 47.619 0.00 0.00 40.17 4.42
786 1655 2.168521 AGCAATGAGTGTAGGTGCGTAT 59.831 45.455 0.00 0.00 40.17 3.06
787 1656 3.383505 AGCAATGAGTGTAGGTGCGTATA 59.616 43.478 0.00 0.00 40.17 1.47
788 1657 4.039245 AGCAATGAGTGTAGGTGCGTATAT 59.961 41.667 0.00 0.00 40.17 0.86
789 1658 5.243060 AGCAATGAGTGTAGGTGCGTATATA 59.757 40.000 0.00 0.00 40.17 0.86
790 1659 6.071334 AGCAATGAGTGTAGGTGCGTATATAT 60.071 38.462 0.00 0.00 40.17 0.86
791 1660 7.122204 AGCAATGAGTGTAGGTGCGTATATATA 59.878 37.037 0.00 0.00 40.17 0.86
792 1661 7.758076 GCAATGAGTGTAGGTGCGTATATATAA 59.242 37.037 0.00 0.00 0.00 0.98
793 1662 9.290483 CAATGAGTGTAGGTGCGTATATATAAG 57.710 37.037 1.67 1.67 0.00 1.73
794 1663 6.849502 TGAGTGTAGGTGCGTATATATAAGC 58.150 40.000 19.93 19.93 38.08 3.09
795 1664 5.877031 AGTGTAGGTGCGTATATATAAGCG 58.123 41.667 20.87 11.02 40.00 4.68
796 1665 5.413833 AGTGTAGGTGCGTATATATAAGCGT 59.586 40.000 20.87 12.96 40.00 5.07
797 1666 5.736358 GTGTAGGTGCGTATATATAAGCGTC 59.264 44.000 20.87 16.67 40.00 5.19
798 1667 5.645067 TGTAGGTGCGTATATATAAGCGTCT 59.355 40.000 20.87 20.51 40.00 4.18
799 1668 4.982999 AGGTGCGTATATATAAGCGTCTG 58.017 43.478 20.87 0.00 40.00 3.51
800 1669 4.698780 AGGTGCGTATATATAAGCGTCTGA 59.301 41.667 20.87 5.22 40.00 3.27
801 1670 5.357314 AGGTGCGTATATATAAGCGTCTGAT 59.643 40.000 20.87 5.80 40.00 2.90
802 1671 6.034591 GGTGCGTATATATAAGCGTCTGATT 58.965 40.000 20.87 0.00 40.00 2.57
803 1672 7.066645 AGGTGCGTATATATAAGCGTCTGATTA 59.933 37.037 20.87 3.42 40.00 1.75
804 1673 7.861372 GGTGCGTATATATAAGCGTCTGATTAT 59.139 37.037 20.87 0.00 40.00 1.28
805 1674 9.874215 GTGCGTATATATAAGCGTCTGATTATA 57.126 33.333 20.87 2.23 41.63 0.98
843 1712 2.076863 CCTGAAAGAACACCATCGTCC 58.923 52.381 0.00 0.00 34.07 4.79
857 1726 1.445582 CGTCCCTTCCGAGGAAACG 60.446 63.158 11.57 11.57 46.74 3.60
1119 1996 1.228490 CCCTATCCGCTACGTCCCT 60.228 63.158 0.00 0.00 0.00 4.20
1418 2319 3.406512 ACTAGTAATGAGGCTGGGAGT 57.593 47.619 0.00 0.00 0.00 3.85
1419 2320 3.301274 ACTAGTAATGAGGCTGGGAGTC 58.699 50.000 0.00 0.00 0.00 3.36
1420 2321 1.115467 AGTAATGAGGCTGGGAGTCG 58.885 55.000 0.00 0.00 0.00 4.18
1421 2322 0.824759 GTAATGAGGCTGGGAGTCGT 59.175 55.000 0.00 0.00 0.00 4.34
1422 2323 1.207329 GTAATGAGGCTGGGAGTCGTT 59.793 52.381 0.00 0.00 0.00 3.85
1423 2324 0.250513 AATGAGGCTGGGAGTCGTTC 59.749 55.000 0.00 0.00 0.00 3.95
1424 2325 0.616111 ATGAGGCTGGGAGTCGTTCT 60.616 55.000 0.00 0.00 0.00 3.01
1526 2432 5.758924 TCGGTGATCAATCTAAGTATCGTG 58.241 41.667 0.00 0.00 0.00 4.35
1567 2473 6.148150 TGGATCTCGTGTTGTTTGGTTAATAC 59.852 38.462 0.00 0.00 0.00 1.89
1594 2503 5.497474 AGTGCCTTAACGTTCCTTGATTAT 58.503 37.500 2.82 0.00 0.00 1.28
1610 2519 7.039434 TCCTTGATTATTATCATCTCTGCGAGT 60.039 37.037 0.00 0.00 40.37 4.18
1626 2535 8.904834 TCTCTGCGAGTTTCTCTTTAATAGTAT 58.095 33.333 5.66 0.00 0.00 2.12
1675 2584 1.527034 TCTGCTCAATTGTGGCTGTC 58.473 50.000 20.19 2.67 0.00 3.51
1732 2641 3.082698 TCAATTCTTGCTGTTGTGTGC 57.917 42.857 0.00 0.00 0.00 4.57
1733 2642 2.689471 TCAATTCTTGCTGTTGTGTGCT 59.311 40.909 0.00 0.00 0.00 4.40
1734 2643 2.787601 ATTCTTGCTGTTGTGTGCTG 57.212 45.000 0.00 0.00 0.00 4.41
1767 2679 8.929827 TGCATAGATGGTGTTTGATTTTATTG 57.070 30.769 0.00 0.00 0.00 1.90
1813 2725 7.793927 GGATACTTAATTCCCAAGTCTCTTG 57.206 40.000 2.90 2.90 37.42 3.02
1814 2726 7.339482 GGATACTTAATTCCCAAGTCTCTTGT 58.661 38.462 8.37 0.00 37.42 3.16
1889 2801 7.039363 AGTCTAGCAGGGATACTTAATTAGCAG 60.039 40.741 0.00 0.00 0.00 4.24
1959 2874 4.021544 TCACAAATAAACACAGGGAATGCC 60.022 41.667 0.00 0.00 0.00 4.40
1974 2889 3.347216 GAATGCCTAGCTGGAACTTCAA 58.653 45.455 0.00 0.00 38.35 2.69
2036 2954 6.208599 TGATTTGTTAGGAGTTTGATCAACCC 59.791 38.462 7.89 9.85 35.77 4.11
2049 2967 0.609662 TCAACCCGGGTAGCTACAAC 59.390 55.000 30.52 15.59 0.00 3.32
2058 2976 4.062991 CGGGTAGCTACAACTTTCACTTT 58.937 43.478 24.75 0.00 0.00 2.66
2104 3022 7.563188 TGAAATTTCCTAAGCAATATGCCCTTA 59.437 33.333 15.48 0.00 46.52 2.69
2113 3031 5.457686 AGCAATATGCCCTTAATTTCCTCA 58.542 37.500 0.00 0.00 46.52 3.86
2135 3053 5.069648 TCAAGGAGTTGATGCACTAGGATAG 59.930 44.000 0.00 0.00 40.31 2.08
2281 3201 9.809096 TTTGATTAGTATCATCTCTGTGAGTTC 57.191 33.333 0.00 0.00 40.37 3.01
2311 3231 7.313646 TGTTCTCTTCCTTGTAATAGTTCGAG 58.686 38.462 0.00 0.00 0.00 4.04
2367 3287 2.563798 CGTGGCTGTGTTGGGCATT 61.564 57.895 0.00 0.00 41.11 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.974236 AGAACTGCAGTTGAGGTAGCT 59.026 47.619 35.67 20.94 38.56 3.32
1 2 2.464157 AGAACTGCAGTTGAGGTAGC 57.536 50.000 35.67 19.04 38.56 3.58
2 3 5.126222 TCTGATAGAACTGCAGTTGAGGTAG 59.874 44.000 35.67 24.55 38.56 3.18
3 4 5.016831 TCTGATAGAACTGCAGTTGAGGTA 58.983 41.667 35.67 20.24 38.56 3.08
4 5 3.834813 TCTGATAGAACTGCAGTTGAGGT 59.165 43.478 35.67 18.25 38.56 3.85
5 6 4.462508 TCTGATAGAACTGCAGTTGAGG 57.537 45.455 35.67 18.00 38.56 3.86
16 17 7.923344 ATGTACATACAGCTGTTCTGATAGAAC 59.077 37.037 27.06 16.25 45.42 3.01
17 18 7.404671 TGTACATACAGCTGTTCTGATAGAA 57.595 36.000 27.06 3.23 45.72 2.10
18 19 7.068716 ACATGTACATACAGCTGTTCTGATAGA 59.931 37.037 27.06 14.86 45.72 1.98
19 20 7.205992 ACATGTACATACAGCTGTTCTGATAG 58.794 38.462 27.06 11.70 45.72 2.08
20 21 7.112452 ACATGTACATACAGCTGTTCTGATA 57.888 36.000 27.06 5.84 45.72 2.15
21 22 5.982356 ACATGTACATACAGCTGTTCTGAT 58.018 37.500 27.06 9.59 45.72 2.90
22 23 5.047377 TGACATGTACATACAGCTGTTCTGA 60.047 40.000 27.06 7.17 45.72 3.27
24 25 5.405935 TGACATGTACATACAGCTGTTCT 57.594 39.130 27.06 10.40 39.92 3.01
25 26 4.033358 GCTGACATGTACATACAGCTGTTC 59.967 45.833 34.61 13.37 42.00 3.18
26 27 3.935203 GCTGACATGTACATACAGCTGTT 59.065 43.478 34.61 10.01 42.00 3.16
27 28 3.525537 GCTGACATGTACATACAGCTGT 58.474 45.455 34.61 25.12 42.00 4.40
30 31 3.126831 GGAGCTGACATGTACATACAGC 58.873 50.000 34.79 34.79 43.70 4.40
31 32 4.391405 TGGAGCTGACATGTACATACAG 57.609 45.455 25.16 25.16 39.92 2.74
32 33 4.222810 AGTTGGAGCTGACATGTACATACA 59.777 41.667 8.32 10.82 40.98 2.29
33 34 4.759782 AGTTGGAGCTGACATGTACATAC 58.240 43.478 8.32 6.65 0.00 2.39
34 35 4.466015 TGAGTTGGAGCTGACATGTACATA 59.534 41.667 8.32 0.00 0.00 2.29
35 36 3.261643 TGAGTTGGAGCTGACATGTACAT 59.738 43.478 1.41 1.41 0.00 2.29
36 37 2.632512 TGAGTTGGAGCTGACATGTACA 59.367 45.455 0.00 0.00 0.00 2.90
37 38 3.319137 TGAGTTGGAGCTGACATGTAC 57.681 47.619 0.00 0.00 0.00 2.90
38 39 4.350368 TTTGAGTTGGAGCTGACATGTA 57.650 40.909 0.00 0.00 0.00 2.29
39 40 2.936919 TTGAGTTGGAGCTGACATGT 57.063 45.000 0.00 0.00 0.00 3.21
40 41 3.817084 TCTTTTGAGTTGGAGCTGACATG 59.183 43.478 0.00 0.00 0.00 3.21
41 42 3.817647 GTCTTTTGAGTTGGAGCTGACAT 59.182 43.478 0.00 0.00 0.00 3.06
42 43 3.206150 GTCTTTTGAGTTGGAGCTGACA 58.794 45.455 0.00 0.00 0.00 3.58
43 44 2.550180 GGTCTTTTGAGTTGGAGCTGAC 59.450 50.000 0.00 0.00 0.00 3.51
44 45 2.172505 TGGTCTTTTGAGTTGGAGCTGA 59.827 45.455 0.00 0.00 0.00 4.26
45 46 2.291741 GTGGTCTTTTGAGTTGGAGCTG 59.708 50.000 0.00 0.00 0.00 4.24
46 47 2.173569 AGTGGTCTTTTGAGTTGGAGCT 59.826 45.455 0.00 0.00 0.00 4.09
47 48 2.576615 AGTGGTCTTTTGAGTTGGAGC 58.423 47.619 0.00 0.00 0.00 4.70
48 49 3.748568 GCTAGTGGTCTTTTGAGTTGGAG 59.251 47.826 0.00 0.00 0.00 3.86
49 50 3.135712 TGCTAGTGGTCTTTTGAGTTGGA 59.864 43.478 0.00 0.00 0.00 3.53
50 51 3.251004 GTGCTAGTGGTCTTTTGAGTTGG 59.749 47.826 0.00 0.00 0.00 3.77
51 52 3.876914 TGTGCTAGTGGTCTTTTGAGTTG 59.123 43.478 0.00 0.00 0.00 3.16
52 53 4.130118 CTGTGCTAGTGGTCTTTTGAGTT 58.870 43.478 0.00 0.00 0.00 3.01
80 81 5.901413 ATAGAATGCTGGAGAATGGAGAA 57.099 39.130 0.00 0.00 0.00 2.87
87 88 3.976654 AGGCCTTATAGAATGCTGGAGAA 59.023 43.478 0.00 0.00 0.00 2.87
106 107 3.558109 GGATGGGATTAAGCACTAGAGGC 60.558 52.174 0.00 0.00 0.00 4.70
107 108 3.306364 CGGATGGGATTAAGCACTAGAGG 60.306 52.174 0.00 0.00 0.00 3.69
131 132 2.918345 GCAGCGGCAACAATGGTGA 61.918 57.895 0.79 0.00 40.72 4.02
132 133 2.431260 GCAGCGGCAACAATGGTG 60.431 61.111 3.18 0.00 40.72 4.17
176 178 3.055819 TCCATGGAGAGTTTACTGCAGAC 60.056 47.826 23.35 8.49 41.09 3.51
194 196 5.147330 TGTATTCGACAGAAACACTCCAT 57.853 39.130 0.00 0.00 40.15 3.41
198 200 4.957296 AGGTTGTATTCGACAGAAACACT 58.043 39.130 0.00 0.00 39.88 3.55
230 241 6.146673 CAGAAAGGAGCATTGGACAATTTTTC 59.853 38.462 0.00 2.54 0.00 2.29
253 264 1.136110 ACCGCAAAGAAAACCCAACAG 59.864 47.619 0.00 0.00 0.00 3.16
264 275 3.025262 ACCAAAGGTTAAACCGCAAAGA 58.975 40.909 0.00 0.00 44.90 2.52
265 276 3.120041 CACCAAAGGTTAAACCGCAAAG 58.880 45.455 0.00 0.00 44.90 2.77
267 278 1.409427 CCACCAAAGGTTAAACCGCAA 59.591 47.619 0.00 0.00 44.90 4.85
268 279 1.033574 CCACCAAAGGTTAAACCGCA 58.966 50.000 0.00 0.00 44.90 5.69
269 280 1.034356 ACCACCAAAGGTTAAACCGC 58.966 50.000 0.00 0.00 44.90 5.68
270 281 2.025898 ACACCACCAAAGGTTAAACCG 58.974 47.619 0.00 0.00 44.90 4.44
271 282 4.475051 AAACACCACCAAAGGTTAAACC 57.525 40.909 0.00 0.00 40.77 3.27
272 283 5.120986 CACAAAACACCACCAAAGGTTAAAC 59.879 40.000 0.00 0.00 40.77 2.01
273 284 5.238583 CACAAAACACCACCAAAGGTTAAA 58.761 37.500 0.00 0.00 40.77 1.52
274 285 4.822026 CACAAAACACCACCAAAGGTTAA 58.178 39.130 0.00 0.00 40.77 2.01
275 286 3.368531 GCACAAAACACCACCAAAGGTTA 60.369 43.478 0.00 0.00 40.77 2.85
276 287 2.614229 GCACAAAACACCACCAAAGGTT 60.614 45.455 0.00 0.00 40.77 3.50
277 288 1.066502 GCACAAAACACCACCAAAGGT 60.067 47.619 0.00 0.00 44.48 3.50
278 289 1.650825 GCACAAAACACCACCAAAGG 58.349 50.000 0.00 0.00 0.00 3.11
279 290 1.650825 GGCACAAAACACCACCAAAG 58.349 50.000 0.00 0.00 0.00 2.77
280 291 0.108615 CGGCACAAAACACCACCAAA 60.109 50.000 0.00 0.00 0.00 3.28
283 294 0.804156 CAACGGCACAAAACACCACC 60.804 55.000 0.00 0.00 0.00 4.61
288 299 3.628032 TGAATCTACAACGGCACAAAACA 59.372 39.130 0.00 0.00 0.00 2.83
295 306 2.236146 AGGACATGAATCTACAACGGCA 59.764 45.455 0.00 0.00 0.00 5.69
300 311 6.213397 TCCAAGAGAAGGACATGAATCTACAA 59.787 38.462 0.00 0.00 0.00 2.41
312 323 2.849294 AACAGCTCCAAGAGAAGGAC 57.151 50.000 0.00 0.00 0.00 3.85
318 329 3.217626 ACCAAGAAAACAGCTCCAAGAG 58.782 45.455 0.00 0.00 0.00 2.85
337 348 5.918608 TGCTTATTTCCACTGAGAGATACC 58.081 41.667 0.00 0.00 0.00 2.73
342 357 6.748333 TCAATTGCTTATTTCCACTGAGAG 57.252 37.500 0.00 0.00 0.00 3.20
355 370 3.266636 TCGATTCCGCTTCAATTGCTTA 58.733 40.909 0.00 0.00 35.37 3.09
359 374 7.684062 ATTTTTATCGATTCCGCTTCAATTG 57.316 32.000 1.71 0.00 35.37 2.32
362 377 7.254658 GGTCTATTTTTATCGATTCCGCTTCAA 60.255 37.037 1.71 0.00 35.37 2.69
368 383 5.224888 TCCGGTCTATTTTTATCGATTCCG 58.775 41.667 1.71 4.77 35.02 4.30
388 403 6.036517 CAGAAAAATCACATTAGAGACCTCCG 59.963 42.308 0.00 0.00 0.00 4.63
403 418 8.890718 TGATTTGAACAAATTGCAGAAAAATCA 58.109 25.926 12.91 13.70 40.77 2.57
406 421 7.120285 TGGTGATTTGAACAAATTGCAGAAAAA 59.880 29.630 12.91 0.00 40.77 1.94
419 434 6.924913 TTTTATGGGATGGTGATTTGAACA 57.075 33.333 0.00 0.00 0.00 3.18
423 438 8.694540 TCAGTTATTTTATGGGATGGTGATTTG 58.305 33.333 0.00 0.00 0.00 2.32
424 439 8.695456 GTCAGTTATTTTATGGGATGGTGATTT 58.305 33.333 0.00 0.00 0.00 2.17
426 441 6.486657 CGTCAGTTATTTTATGGGATGGTGAT 59.513 38.462 0.00 0.00 0.00 3.06
427 442 5.820423 CGTCAGTTATTTTATGGGATGGTGA 59.180 40.000 0.00 0.00 0.00 4.02
430 445 5.820423 TGACGTCAGTTATTTTATGGGATGG 59.180 40.000 15.76 0.00 0.00 3.51
431 446 6.918892 TGACGTCAGTTATTTTATGGGATG 57.081 37.500 15.76 0.00 0.00 3.51
440 455 6.593770 TGCACAAGATATGACGTCAGTTATTT 59.406 34.615 24.41 10.05 0.00 1.40
441 456 6.036083 GTGCACAAGATATGACGTCAGTTATT 59.964 38.462 24.41 13.62 0.00 1.40
442 457 5.520288 GTGCACAAGATATGACGTCAGTTAT 59.480 40.000 24.41 17.01 0.00 1.89
443 458 4.862574 GTGCACAAGATATGACGTCAGTTA 59.137 41.667 24.41 12.74 0.00 2.24
444 459 3.679980 GTGCACAAGATATGACGTCAGTT 59.320 43.478 24.41 13.41 0.00 3.16
445 460 3.254060 GTGCACAAGATATGACGTCAGT 58.746 45.455 24.41 14.89 0.00 3.41
446 461 2.604914 GGTGCACAAGATATGACGTCAG 59.395 50.000 24.41 11.37 0.00 3.51
449 464 4.141937 ACATAGGTGCACAAGATATGACGT 60.142 41.667 24.97 0.00 0.00 4.34
451 466 6.516718 ACTACATAGGTGCACAAGATATGAC 58.483 40.000 24.97 6.70 0.00 3.06
454 503 7.841282 ACTACTACATAGGTGCACAAGATAT 57.159 36.000 20.43 8.11 34.89 1.63
526 577 9.485206 GCCGATGATACTATTTACCTTTCTTTA 57.515 33.333 0.00 0.00 0.00 1.85
528 579 7.657761 CAGCCGATGATACTATTTACCTTTCTT 59.342 37.037 0.00 0.00 0.00 2.52
531 582 6.827727 ACAGCCGATGATACTATTTACCTTT 58.172 36.000 0.00 0.00 0.00 3.11
565 616 6.825721 ACAAATCATTTGGCACCTAAACAAAA 59.174 30.769 14.70 0.00 44.81 2.44
569 620 6.859420 AAACAAATCATTTGGCACCTAAAC 57.141 33.333 14.70 0.00 44.81 2.01
576 627 8.153550 ACAATTACCTAAACAAATCATTTGGCA 58.846 29.630 14.70 0.00 44.81 4.92
577 628 8.546597 ACAATTACCTAAACAAATCATTTGGC 57.453 30.769 14.70 0.00 44.81 4.52
615 696 9.065871 CCGAATCTCAATCAGAAAATGTAAAAC 57.934 33.333 0.00 0.00 33.62 2.43
627 708 3.382865 TCTGTCTCCCGAATCTCAATCAG 59.617 47.826 0.00 0.00 0.00 2.90
635 716 1.757118 TGGATGTCTGTCTCCCGAATC 59.243 52.381 0.00 0.00 0.00 2.52
638 719 1.866015 ATTGGATGTCTGTCTCCCGA 58.134 50.000 0.00 0.00 0.00 5.14
648 729 5.779922 TCCGCAACTACTATATTGGATGTC 58.220 41.667 0.00 0.00 0.00 3.06
660 741 5.594725 TCTCAGATTAGAATCCGCAACTACT 59.405 40.000 0.00 0.00 36.04 2.57
664 745 5.537188 AGATCTCAGATTAGAATCCGCAAC 58.463 41.667 0.00 0.00 36.04 4.17
666 747 4.829492 TGAGATCTCAGATTAGAATCCGCA 59.171 41.667 21.67 0.00 36.04 5.69
667 748 5.384063 TGAGATCTCAGATTAGAATCCGC 57.616 43.478 21.67 0.00 36.04 5.54
718 1587 2.479566 TGAGTACCTCCTACGACGTT 57.520 50.000 5.50 0.00 0.00 3.99
753 1622 9.856488 CCTACACTCATTGCTATAAATATACGT 57.144 33.333 0.00 0.00 0.00 3.57
754 1623 9.856488 ACCTACACTCATTGCTATAAATATACG 57.144 33.333 0.00 0.00 0.00 3.06
756 1625 9.653287 GCACCTACACTCATTGCTATAAATATA 57.347 33.333 0.00 0.00 0.00 0.86
757 1626 7.331934 CGCACCTACACTCATTGCTATAAATAT 59.668 37.037 0.00 0.00 0.00 1.28
758 1627 6.645003 CGCACCTACACTCATTGCTATAAATA 59.355 38.462 0.00 0.00 0.00 1.40
759 1628 5.466728 CGCACCTACACTCATTGCTATAAAT 59.533 40.000 0.00 0.00 0.00 1.40
760 1629 4.808895 CGCACCTACACTCATTGCTATAAA 59.191 41.667 0.00 0.00 0.00 1.40
761 1630 4.142026 ACGCACCTACACTCATTGCTATAA 60.142 41.667 0.00 0.00 0.00 0.98
762 1631 3.383505 ACGCACCTACACTCATTGCTATA 59.616 43.478 0.00 0.00 0.00 1.31
763 1632 2.168521 ACGCACCTACACTCATTGCTAT 59.831 45.455 0.00 0.00 0.00 2.97
764 1633 1.548719 ACGCACCTACACTCATTGCTA 59.451 47.619 0.00 0.00 0.00 3.49
765 1634 0.321671 ACGCACCTACACTCATTGCT 59.678 50.000 0.00 0.00 0.00 3.91
766 1635 2.004583 TACGCACCTACACTCATTGC 57.995 50.000 0.00 0.00 0.00 3.56
767 1636 9.290483 CTTATATATACGCACCTACACTCATTG 57.710 37.037 0.00 0.00 0.00 2.82
768 1637 7.974501 GCTTATATATACGCACCTACACTCATT 59.025 37.037 14.56 0.00 0.00 2.57
769 1638 7.481642 GCTTATATATACGCACCTACACTCAT 58.518 38.462 14.56 0.00 0.00 2.90
770 1639 6.402875 CGCTTATATATACGCACCTACACTCA 60.403 42.308 18.24 0.00 0.00 3.41
771 1640 5.964168 CGCTTATATATACGCACCTACACTC 59.036 44.000 18.24 0.00 0.00 3.51
772 1641 5.413833 ACGCTTATATATACGCACCTACACT 59.586 40.000 18.24 0.00 0.00 3.55
773 1642 5.634896 ACGCTTATATATACGCACCTACAC 58.365 41.667 18.24 0.00 0.00 2.90
774 1643 5.645067 AGACGCTTATATATACGCACCTACA 59.355 40.000 18.24 0.00 0.00 2.74
775 1644 5.964168 CAGACGCTTATATATACGCACCTAC 59.036 44.000 18.24 6.89 0.00 3.18
776 1645 5.876460 TCAGACGCTTATATATACGCACCTA 59.124 40.000 18.24 0.84 0.00 3.08
777 1646 4.698780 TCAGACGCTTATATATACGCACCT 59.301 41.667 18.24 12.08 0.00 4.00
778 1647 4.978186 TCAGACGCTTATATATACGCACC 58.022 43.478 18.24 10.42 0.00 5.01
779 1648 8.783999 ATAATCAGACGCTTATATATACGCAC 57.216 34.615 18.24 12.29 0.00 5.34
810 1679 3.881220 TCTTTCAGGACGTCACCTTTTT 58.119 40.909 18.91 0.00 38.32 1.94
811 1680 3.553828 TCTTTCAGGACGTCACCTTTT 57.446 42.857 18.91 0.00 38.32 2.27
812 1681 3.203716 GTTCTTTCAGGACGTCACCTTT 58.796 45.455 18.91 0.00 38.32 3.11
813 1682 2.169769 TGTTCTTTCAGGACGTCACCTT 59.830 45.455 18.91 0.00 38.32 3.50
814 1683 1.760613 TGTTCTTTCAGGACGTCACCT 59.239 47.619 18.91 3.53 41.43 4.00
815 1684 1.865340 GTGTTCTTTCAGGACGTCACC 59.135 52.381 18.91 0.62 0.00 4.02
816 1685 1.865340 GGTGTTCTTTCAGGACGTCAC 59.135 52.381 18.91 6.91 0.00 3.67
817 1686 1.483004 TGGTGTTCTTTCAGGACGTCA 59.517 47.619 18.91 0.00 0.00 4.35
818 1687 2.234300 TGGTGTTCTTTCAGGACGTC 57.766 50.000 7.13 7.13 0.00 4.34
819 1688 2.767505 GATGGTGTTCTTTCAGGACGT 58.232 47.619 0.00 0.00 0.00 4.34
820 1689 1.726791 CGATGGTGTTCTTTCAGGACG 59.273 52.381 0.00 0.00 0.00 4.79
821 1690 2.737252 GACGATGGTGTTCTTTCAGGAC 59.263 50.000 0.00 0.00 0.00 3.85
822 1691 2.289444 GGACGATGGTGTTCTTTCAGGA 60.289 50.000 0.00 0.00 0.00 3.86
823 1692 2.076863 GGACGATGGTGTTCTTTCAGG 58.923 52.381 0.00 0.00 0.00 3.86
824 1693 2.076863 GGGACGATGGTGTTCTTTCAG 58.923 52.381 0.00 0.00 0.00 3.02
825 1694 1.697432 AGGGACGATGGTGTTCTTTCA 59.303 47.619 0.00 0.00 0.00 2.69
826 1695 2.474410 AGGGACGATGGTGTTCTTTC 57.526 50.000 0.00 0.00 0.00 2.62
827 1696 2.552373 GGAAGGGACGATGGTGTTCTTT 60.552 50.000 0.00 0.00 0.00 2.52
857 1726 4.501559 CCTTTCGTTTTCCTTTCGTTTTCC 59.498 41.667 0.00 0.00 0.00 3.13
858 1727 5.334319 TCCTTTCGTTTTCCTTTCGTTTTC 58.666 37.500 0.00 0.00 0.00 2.29
859 1728 5.313520 TCCTTTCGTTTTCCTTTCGTTTT 57.686 34.783 0.00 0.00 0.00 2.43
860 1729 4.968812 TCCTTTCGTTTTCCTTTCGTTT 57.031 36.364 0.00 0.00 0.00 3.60
861 1730 4.968812 TTCCTTTCGTTTTCCTTTCGTT 57.031 36.364 0.00 0.00 0.00 3.85
862 1731 4.968812 TTTCCTTTCGTTTTCCTTTCGT 57.031 36.364 0.00 0.00 0.00 3.85
863 1732 4.203563 CGTTTTCCTTTCGTTTTCCTTTCG 59.796 41.667 0.00 0.00 0.00 3.46
864 1733 4.027132 GCGTTTTCCTTTCGTTTTCCTTTC 60.027 41.667 0.00 0.00 0.00 2.62
865 1734 3.861113 GCGTTTTCCTTTCGTTTTCCTTT 59.139 39.130 0.00 0.00 0.00 3.11
866 1735 3.119424 TGCGTTTTCCTTTCGTTTTCCTT 60.119 39.130 0.00 0.00 0.00 3.36
867 1736 2.424246 TGCGTTTTCCTTTCGTTTTCCT 59.576 40.909 0.00 0.00 0.00 3.36
1020 1897 3.058160 CGGAGCAGCCTTTGGTGG 61.058 66.667 0.00 0.00 40.37 4.61
1233 2134 2.359602 TCGTCGTCGAGGAAGCCT 60.360 61.111 14.83 0.00 41.35 4.58
1393 2294 2.957006 CCAGCCTCATTACTAGTACCGT 59.043 50.000 0.91 0.00 0.00 4.83
1418 2319 3.314357 CCAGTACCATATCGACAGAACGA 59.686 47.826 0.00 0.00 46.04 3.85
1419 2320 3.066342 ACCAGTACCATATCGACAGAACG 59.934 47.826 0.00 0.00 0.00 3.95
1420 2321 4.360563 CACCAGTACCATATCGACAGAAC 58.639 47.826 0.00 0.00 0.00 3.01
1421 2322 3.383505 CCACCAGTACCATATCGACAGAA 59.616 47.826 0.00 0.00 0.00 3.02
1422 2323 2.956333 CCACCAGTACCATATCGACAGA 59.044 50.000 0.00 0.00 0.00 3.41
1423 2324 2.693591 ACCACCAGTACCATATCGACAG 59.306 50.000 0.00 0.00 0.00 3.51
1424 2325 2.691526 GACCACCAGTACCATATCGACA 59.308 50.000 0.00 0.00 0.00 4.35
1526 2432 4.712425 CAAGGGCAACGCAGCAGC 62.712 66.667 1.99 0.00 35.83 5.25
1582 2490 7.600375 TCGCAGAGATGATAATAATCAAGGAAC 59.400 37.037 0.00 0.00 45.12 3.62
1626 2535 6.606796 ACATAGCAACAATCCATAACCAATCA 59.393 34.615 0.00 0.00 0.00 2.57
1675 2584 2.093216 GCATCAGCTCGTTCCCAAG 58.907 57.895 0.00 0.00 37.91 3.61
1732 2641 6.932356 ACACCATCTATGCAAGATAAACAG 57.068 37.500 9.96 0.94 43.42 3.16
1733 2642 7.392953 TCAAACACCATCTATGCAAGATAAACA 59.607 33.333 9.96 0.00 43.42 2.83
1734 2643 7.761409 TCAAACACCATCTATGCAAGATAAAC 58.239 34.615 9.96 0.00 43.42 2.01
1806 2718 7.727181 ACCAATACCACTATGATACAAGAGAC 58.273 38.462 0.00 0.00 0.00 3.36
1813 2725 8.792830 ATTGCATACCAATACCACTATGATAC 57.207 34.615 0.00 0.00 42.24 2.24
1814 2726 9.806448 AAATTGCATACCAATACCACTATGATA 57.194 29.630 0.00 0.00 43.22 2.15
1870 2782 8.133024 AGAGATCTGCTAATTAAGTATCCCTG 57.867 38.462 0.00 0.00 0.00 4.45
1929 2841 8.050778 TCCCTGTGTTTATTTGTGATGATAAC 57.949 34.615 0.00 0.00 0.00 1.89
1938 2853 4.159557 AGGCATTCCCTGTGTTTATTTGT 58.840 39.130 0.00 0.00 44.28 2.83
1959 2874 5.486526 AGAGTTCATTGAAGTTCCAGCTAG 58.513 41.667 8.12 0.00 0.00 3.42
1974 2889 7.715657 TGCAAAGAAACACAATAAGAGTTCAT 58.284 30.769 0.00 0.00 30.37 2.57
2036 2954 3.314541 AGTGAAAGTTGTAGCTACCCG 57.685 47.619 21.01 0.00 0.00 5.28
2049 2967 6.089016 CACTTGCAGCATTGATAAAGTGAAAG 59.911 38.462 18.02 0.00 40.48 2.62
2077 2995 6.383726 AGGGCATATTGCTTAGGAAATTTCAA 59.616 34.615 19.49 5.46 44.28 2.69
2087 3005 7.231317 TGAGGAAATTAAGGGCATATTGCTTAG 59.769 37.037 0.00 0.00 44.28 2.18
2104 3022 4.219288 GTGCATCAACTCCTTGAGGAAATT 59.781 41.667 0.76 0.00 44.91 1.82
2113 3031 4.202305 GCTATCCTAGTGCATCAACTCCTT 60.202 45.833 0.00 0.00 0.00 3.36
2135 3053 5.163513 CAAGGTCAATCAAAAGTACATGGC 58.836 41.667 0.00 0.00 0.00 4.40
2167 3085 3.754965 TCCATGCTAATAGAATGTGCCC 58.245 45.455 7.43 0.00 28.74 5.36
2253 3172 9.593134 ACTCACAGAGATGATACTAATCAAAAC 57.407 33.333 0.31 0.00 38.11 2.43
2281 3201 8.622948 ACTATTACAAGGAAGAGAACAAAAGG 57.377 34.615 0.00 0.00 0.00 3.11
2308 3228 6.203530 ACAACAAGCATATCCATAATCACTCG 59.796 38.462 0.00 0.00 0.00 4.18
2311 3231 7.433131 CACAACAACAAGCATATCCATAATCAC 59.567 37.037 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.