>input_sequence_82014
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------------------------------------ATGGACGCCAGGACGCCCCGCCACCAAAGGCTGCTCCGCACCCC
GCGCGGCCCACCGACGCCCCATCACCCCCGCCACCACCCCGGCACGCCCGGCCAAAACCCTATCCGCTACGTCCCTGCCG
CCGCCCCGATCTCCCCGCGCTCCGC---------------------TGCCGCCGCCGT---CGCCGCCATGGAGGACGAC
GCCATCACCACGCTCATGGACATCGACGACTCCCCCCGCAGCGCCGCCGGCGCAGGCTTCCTCGACGACGACGACGAGGG
GGACCTCCTCCACTCCCACCGCATGGGCGGCCGCGGGAACGAGGCCCGGGGCCCCCTCCCCTTCGCCGGCTTCTTCAACA
CCTTCGACGGCGCCGACTTCGACGACTCCGATCTGGCCTGA---------------------------------------
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>chr6B_1_TraesCS6B01G254700
AGCTACCTCAACTGCAGTTCTATCAGAACAGCTGTATGTACATGTCAGCTCCAACTCAAAAGACCACTAGCACAGTAGCA
TTCTCCATTCTCCAGCATTCTATAAGGCCTCTAGTGCTTAATCCCATCCGTTCACCATTGTTGCCGCTGCACGAAATTGA
GATAAACAAATA-AAAGGTCTGCAGTAAACTCTCCATGGA-GTGTTTCTGTCGAATACAACCTTTT---T-----TGTAT
GAAAAATTGTCCAATGCTCCTTTCTGTTGGGTTTTCTTTGCGGTTTAACCTTTGGTGGTGTTTTGTGCCGTTGTAGATTC
ATGTCCTTCTCTTGGAGCTGTTTTCTTGG----TATCTCTCAGTGGAAATAAGCAATTGAAGCGGAATCGATAAAAATAG
ACCGGAGGTCTCTAATGTGATTTTTCTGCAATTTGTTCAAATCACCATCCCATAAAATAACTGACG--------------
--------------------TCATATCTTGTGCACCTATGTAGTAGTAGTAGTTTCTTAGAAACTATGATAATTATGACA
T--TTTGCAAAAATGATAAAGAAAGGTAAATAGTATCATCGGCTGTCCACTTATTTTTTGTTTAGGTGCCAAATGA----
--------TTTGTTTAGGTAATTGTTTGTTGTATG------------------TTGTTTTACATTTTCTGATTGAGATTC
GGGAGACAGACATCCAATATAGTAGTTGCG--------------------------------------GATTCTAATCTG
AGATCTCAGCAAAGCCAAAGAAACAAGGT---------------------------------------------------
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-----------------------------------------------------------AAGAGGCAACGTCGTAGGAGG
TACTCATAAAATAGGATATACACGTATATTTATAGCAATGAGTGTAGGTGCGTATATATAAGCGTCTGATTATAAAAAAA
AAAGGTGACGTCCTGAAAGAACACCATCGTCCCTTCCGAGGAAACGGAAAACGAAAGGAAAACGAAAGGAAAACGCAGCG
TCTCCGTCCGTCCATATAAAAATAAGCCGTGGGCCAGCAAGGCACGCA--------CAGATCTCCAAACCCTCGCACGCC
AGCCACGCCAGGTTAATAGCCGCCGCAACCCACAAGATGGACGCCAGGACGCCCCGCCACCAAAGGCTGCTCCGCACCCC
GCGCGGCCCACCGACGCCCCATCACCCCCGCCACCACCCCGGCACGCCCGGCCAAAACCCTATCCGCTACGTCCCTGCCG
CCGCCCCGATCTCCCCGCGCTCCGC---------------------TGCCGCCGCCGT---CGCCGCCATGGAGGACGAC
GCCATCACCACGCTCATGGACATCGACGACTCCCCCCGCAGCGCCGCCGGCGCAGGCTTCCTCGACGACGACGACGAGGG
GGACCTCCTCCACTCCCACCGCATGGGCGGCCGCGGGAACGAGGCCCGGGGCCCCCTCCCCTTCGCCGGCTTCTTCAACA
CCTTCGACGGCGCCGACTTCGACGACTCCGATCTGGCCTGATCGAGGCGTCTTACGGTACTAGTAATGAGGCTGGGAGTC
GTTCTGT-----CGATATGGTACTGGTGGTCTATCTAGTTAGGTTATTATCGGTGAAGTGAAACTATTTCGAGGCATCTG
GAGACCTTTCGGTGATCAATCTAAGTATCGTGCTGCTGCGTTGCCCTTGGATCTCGTGTTGTTTGGTTAATAC--GCAAG
TGCCTTAACGT-TCCTTGATTATTATCATCTCTGCGAGTTTCTCTTTAATAGTATGATTGGTTATGGATTGTTGCTATGT
TATTTCTGCTCAATTGTGGCTGTCTTGGGAACGAGCTGATGCTAAGCTAATAAATTCGCTTCAATTCTTGCTGTTGTGTG
CTGTT---TATCTTGCATAGATGGTGTTTGATTTTATTGTTGAAAACATTAGTCTACTAGGGATACTTAATTCCCAAGTC
TCTTGTATCATAGTGGTATTGGTATGCAATTTTAGCCATTTTATTGAAGACGTTAGTCTAGCAGGGATACTTAATTAGCA
GATCTCTTTGATCAGCAGTGGTGTTGCACTGGAAAATCCAGTT---ATCATCACAAATAAACACAGGGAATGCCTAGCTG
GAACTTCAATGAACTCTTATTGTGTTTCTTTGCAACACAATTTAGTGATTTGTTAGGAGTTTGAT---CAACCCGGGTAG
CTACAACTTTCACTTTATCAATGCTGCAAGTGCATTGAAATTTCCTAAGCAATATGCCCTTAATTTCCTCAAGGAGTTGA
TGCACTAGGATAGCCATGTACTTTTGATTGACCTTGCAATTGCAGGGCACATTCTATTAGCATGGAAAATTGAACCCCTC
TTCTTTGA-ATCATCTCTATAACTTTATGAAATATTTTATGATTGCAAATTGTT-TTGATTAGTATCATCTCTGTGAGTT
CCTTTTGTTCTCTTCCTTGTAATAGTTCGAGTGATTATGGATATGCTTGTTGTTGTGTTATTTCTGCTCGTGGCTGTGTT
GGGCATTAGCAGATGCTAAG
>chr6D_54
-----------------------------------------------------ACTCAAAAGACCACTAGCACAGTAGCA
CTCTCCAGTTTCCAGCATTCTGTAAGATCTCTAGTGCTTAATCCCATCCGTCTACCATTGTTGCCGCTGCACGCAATTGA
GATAAACAAATAGAAAGATCTGCAGTAGACTCTCCCTGGGTGTGTTCCTGTCGAATACAACTTTTTTGTT-----TGTAT
AAAAAATTGTTCAATGCTCCTTTGTGTTGGGTTTCTTC-------------TTTGTGGCGTTTTGGGCTGCTGTAGATTC
ATATCCTTTTCTTGGAGCTGTTTTCTTTGTACTTATGTCTCAGTGGAAAGAAGTAACTGAAGTGGAATTGATGAAAATAG
ACTGGAGGTCTCTAATGCGAATTTTCTGCAATTCGTTGCAGCCATTATCCCATATTGCGTATGGCTCTTCTATGCTTTTT
TACCCGTTAACATAAATGACTCGTATCTTGTGCACCGGCA---------TAATTTCTTGGAAACTAGTATGATCATTATG
ACATTTGCAAAAATGAAAGAGCAAGGAAAATAGTATTATCGGCTATCCACTTATCGTTTCTTTAGGCCACAAATGATTAC
TACTCTATTTTTTTTAGATAATTGTTTGTTTAGTGTACACACATGGACTTACTTTCTTTTACATTTTTTGATTGAAAC-C
GGGAGACACACATCCAATATGGTACCCCCTCCGTCCCGTAATATAAGAGCA--TTTTGACACTTTAGGGAATGTAATTTG
AGATCTGGGCAAAGTCGAAGAAACAAGGTTCAAGAGGCAGAAAAGCTCTTCTCCTCCCGCCGCCGCCGCCGCCGGTCTGT
CCCATCTCCTATGGCCT---------------------------------------------------------------
-------------------------------------CTAGACCATGGAGGTGCAGAGGATCTCGGCCC-CCATCGGCAG
GAGGGACCGCGTTCTCGTTCTTGTTAGAGGCAGCGTCTTGGTTGGGGCTGTGTGGCGGCGGCGATGTCCCTTCGTAAGAA
TAATGTCTCCCATGTTCTATCCCCGTCCCGCTGGTGCGTCTAGCATCGTCGGAGGGCGTGTGGAGGTTTGTCTCCGTAGG
ATCTTGCGGGATTCGGTCGATGCTGGTCTTAGGTGGATCTATTTGAATCCGGTCTTCG----------TTTAGGTGTTTA
CATGTTTGATCCTTCTGATCTACGACTTTCTTCATCGGCGATGGTTGCTAGTACTCTGGTGTGC--------TGGTCCTT
AACACGACGACTTGCCTACTGTCTACTACAACAAGGTTTGCCCGACTCCGGTGAGGGAGGGGCGATGACGGTGGCACGCC
TTCGGCTCGCTCCAATGCTTGTAGTCGTCGCTAGGTGGTCCAAGGACATGGTTGTAATTTTTATTATCTTTGTTGTTC-T
TTATACTGTCATGATTGAAGATGAATAGATTGAAAGTTTTTTTTTTGAAAAAAAGTTCAAAGAGGCGACGTCCCGGCAGC
GG------------------------------------------------------------------------------
----------------AAGAACACCGTCGTCTCTTCCGAAGAAAC-----------GGAAAACGAAAGGAAAACGCAGCG
TCTCCGTCCGTCCATATAAAAATAAGCCGTGGGCCAGCAAGGCACGCACGCACGCACAGATCTCCAAACCCTCGCACGCC
AGCCACGCCAGGTTAATAGCCGCCGCAACCCACAAGATGGACGCCAGGACGCCCCGGCACCAAAGGCTGCTCCGCACCCC
GCGCGGCCCACCGACGCCCCATCACCCCCGCCACCACCCCGGCACGCCCGGCCAAAACCCTATCAGCTACGTCCCCGCCG
CCGCCCCGATCTCCCCGCGCTCCGCCGCCCCGATCTCCCCGCGCTCCGCCGCCGCCGCCGCCGCCGCCATGGAGGACGAC
GCCATCACCACGCTCATGGACATCGACGACTCCCCCCGCAGCGCTGCCGGCGCCGGCTTCCTCGACGACGACGACGAGGG
GGACCTCCTCCACTCCCACCGCATGGGCGGCCGCGGGAACGAGGCGCGGGGCCCCCTCCCCTTCGCCGGCTTCTTCAACA
CCTTCGACGGCGCCGACTTCGACGACTCCGATCTGGCCTGATCGAGGCGTCTTCCGGTACTAGTAATGAAGCTGGGAGGT
C----GT-----CGATATGGTGCTGGTGGTCTATCTAGTTAGGTTATTATGGGTGAGGTGAAACTATTCCGAGGCATCTG
GAGACCTTTCGGTGATCAATCTAAGCATCGTACTGCTGCGCTGCCCTTGGATCTCGTGTTGTTTGGTTAATATATGCAAG
TGCCTTAAATTATCCTTGATTAGTATCATCTCTGCGAGGTTCTCTTTAATAGTACGATTGTTTATGGATTGGTGCTATGT
TATTTCTGCTCAATTGTGGCTGTGTTGGGAATGAGCTGATGCTATGACAATAAATTAGCTTCAATTTTTGCTGTTGTGTG
---TT---TATCTTGCATAGATGGTGTTTGATTTTATTATTGAAAACATTAGGCTACTAGGGATACTTAAGTCCCAAATC
TCTTTGACCATAGTTGTATTGGTATGCAATTTTAGCCATTTTATTGGAGACTTTAGTCTAGTGGGACACCTTAATTAGCA
---CTCTTTGATCAGCAGTGATTTTGCACTGGGAAATCCAATTATCATCATCGCAAATAAACACAGGGAATGCATAGCTG
GAACTTCAGTGAACTCTTATTGTTTTTCTTTGCAACACAATT-AGTGATTTGTTAGGAGTTTGAT---CAACCAGGGTAG
CTACAATTTTCACTTAATCAATGCTGCAAGTGCAGTAAAATTTTGTAGGCAATATGCCCTTGATTTCCTCGATGAGTTGA
TGCACTAGGATAACCATGTACTTTTGATTGACCTTGCAATTGCAAGGCACATTCTATTAGCATGCAAAATTGAACCCCTC
TTCTTTGAAATCATCTCTATAGCTTTATGAAATATTTTATGATTGCAAATTATTATTGATTAGTATAATCTCTGTGAGTT
GCTTTTGTTCTCTTCCTTGTAATAGTTTGAATGATTATGGATATGCTTGTTGTTGTGTTATTTCTGCTCGTGGCTGTGTT
GGGCATGAGCAGATGCTAAG
>chr6A_54
-----------------------------------------------------ACTCAAAAGACCACTAGCACAGTAGCA
CTCTCCAGTCTCCAGCATTCTATAAGATCTCTAGTGCTTAATCCCATCCGTCTACCATTGTTGCCGCTGCACGCAATTGA
GATAAACAAATAGAAAGATCTGCAGTAGACTCTCCCTGGGTGTGTTCCTGTCGAATACAACCTTTT---TGTTTGTGTAT
AAAAAATTGTCCAATGCTCCTTTGTGTTGGGTTTCTTC-------------TTTATGGCGTTTTGGGCCGCTGTAGGTTC
ATATCCTTTTCTCGGAGCTGTTTTCTTTGTA----TGTCTCAGTGGAAAGAAGTAACCGAAGTGGAATTGATGAAAATGA
ACTGGAGGTCTCTAATGCGAATTTTCTGCAATTCGTTGCAGCCATTATCCCACATTGCGTATGGCTCTTCTATGCTTTTT
TACCCGTTAAAATAAATTACAGGTATCTTGTACACCTCCA---------TAATTTCTTGGAAACTATGAC---CATTATG
ACATTTGCAAAAATGAAAGAGCAAGGTAAATAGTTTCATCGGCTATCCACTTATTGTTTCTTTAGGCCACAATTGATTAC
TACACTG-TTTTTTTATATAATTGTTTGTTTAGTGTACACACATGGATTTACTTTCTTTTACATTTTTTGATTGAAAT-C
GGGAGACAC--ATCCAATATGGTATTCCCTTTATCCCATAATATAAGAACATTTTTTTACACTTTGCAGAATGTAATTTG
AGATCTCAACAAAGCTAAAGAAACAAGATTCAAAAGGCAGAAAAGCTCTTCTCCTCCCGCCGGCGCCGCCGCCGGTCTGT
CCCATCTCCTATGAGGTTAGAAAGGAAAAAGGAAAAAGAAAAAAGAAAAAAAGACAGCCGTAGGATGAGGTGGGAGTACG
GATGGAAGCATGGGGAGGGAGCAGGCAAGTCGAATCCCTAGACCATGGAGGTGCGGAGGATCACGGCCCTCCACCGGCAG
GAGGGACCCCGTTCTCGTTCTTGTTAGAGTCAGCGTCTTGGTTGGGGTTGTGTGGCGACGATGATGTCCCTTAGTAAGAA
TAATGTCTCCCATGTTCTATCCCCGTCCTAATGGTGCGTCTAGCATCGTCGGAGGG-GTGTGGAGGTTTGTCTCCTTCGG
ATCTTGCGGGATTCGATCAGTGCTGGTCTCTGGTGAATCTATTTGGGTCTTGTCTTCGTTCGTCTTCATTTAGGTGTATA
AAGGTTTGATCCTTCTGATCTACAACTTTCTTCATCGGCGATGGTTGCTAGTACTCTGGTGTGCTGGTCCTATGGTCCTT
AACGCGACGACTTCTCTACTGTCTACTACAATAAGGTTTGCCCGACTCCAGTGAGGGAGGGGCGATGACGGCGGCGCGCC
TTCAGCTCGCTTCAGTGCTTGTAGTAGTCGCTAGGTGACCCATGGACATGGTTATAATTTTTATTACCTTTGTTGTTTTT
TTATACTATCATTATTAAAGATGAATAGATTGGAATTTTTTCCAGAAAAAAAAATGTTCAAGAGGCGTCCCGGAA-----
GG------------------------------------------------------------------------------
----------------AAGAACACCATCGTCTCTTCCGAGGAAGC-----------GGAAAACGAAACGAAAACGCAGCG
TCTCCGTCC----ATAAAAAAATAAGCCGTGGGCCAGCAAGGCACGCACGCAC----AGATCTCCAAAC---------CC
AGCCACGCCAGGTTAATAGCCGCCGCAACCCACAAGATGGACGCCAGGACGCCCCGGCACCAAAGGCTGCTCCGCACCCC
GCGCGGCCCACCGACGCCCCATCATCCCCGCCACCACCCCGGCACGCCCGGCCAAAACCCTATCCGCTACGTCCCAGCCG
CCGCCCCGATCTCCCCGCGCTCCGC---------------------CGCCGCCGCGGCCGCCGCCGCCATGGAGGACGAC
GCCATCACCACGCTCATGGACATCGACGACTCCCCCCGCAGCGCCGCCGGCGCCGGCTTCCTCGACGATGACGACGAGGG
GGACCTCCTCCACTCCCACCGCATGGGCGGCCGCGGGAACGAGGCGCGCGGCCCCCTCCCCTTCGCCGGCTTCTTCAACA
CCTTCGACGGCGCCGACTTCGACGACTCCGATCTGGCCTGATCGAGGCGTCTTCCGGTACTAGTAATGAGGCTGGGAGGT
C----GTTCTGTCGATATGGTACTTGCGGTCTATCTAGTTAGGTTAT---CGGTGAAGTGAAACTATTTCGAGGCATCTG
GAGACCTTTCGGTGATCAATCTAAGTATCGCACTGCTGCGTTGCCCTTGGATCTCGTGTTGTTTGGTTAATATATGCAAG
TGCCTTAACTTATCCTTGATTAGTATCATCTCTGCGAGGTTCTCTTTA-TAGTTCGATCGGTTATGGATTGTTGCTATGT
TATTTCTGCTCAATTGTGGCTGTGTTGGGAACGAGCTGATGCTATGCTAATAAATTAGCTTCGATTCTTGCTGTTGTGCG
---TTGTTTATCTTGCATAGATGGTGTTTGATTTTATTATTGAAAACATTAGTATACTAGAGATACCTGATTCCCCAATC
TCTTTGATCATACAGG--------TGCAATTTTAGCCATTTTATGGAAGACGTTAGTCTAGTAGGTATACTTAATTAGCA
TATCTCTTTGACGAGCAGTGATGTTGCACTGGAAAATCCAATT---ATCATCGCAAATAAACACAGGGGATGCTTAGCTG
GAACTTCAGTTAACTCTTATTATGTTCCTTTGCAAGACAATTTAGTGATTTGTTAGGAGTTTGATGATCAACCAGGATAG
CT-CAATTTTCACTTAATCAATGCTGCAAGTGCAGTGAAATTTCGTAAGCAATATGCCCGTGATTTCCG--AGGAGTTGA
TGCACTAGGATAACCATGTACTTTTGATTGACCTTGCAATTGCAAGTCGCATTCTATTAGCACGGAAAATTGAACCCCTC
TTCTTTGAAATCATCTCTATAACTTTATGAAATATTTTATGATTGTAAATTATTATTGATTAGTATCATCTTTGTGAGTT
GCTTTTGTTCTCTTCCTTGTTCTAATGATTATGATTATGGATATGCTTGTTGTTGTGTTATTTCTGCTCGTGGCTGTGCT
GGGCATGAGCAGATGCTAAG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------
S------S------------------SS-----------------------SS--------------------S------
-----------------S---------S-------S---S------S---------------------------------
S----------------------S----------SS-SSSSSSSSSSSSSS--S----S------S----S---------
--S-----S------------------S--------S------------S---S--S-----S-----S---S-------
--S--------------S--S------------S---SS-SS--SS--------SSSSSSS--S-S--------------
----------------------S--------------SSSSSSSSSSSS--S------S-----------S--S--S-SS
S---------------S-S--S----------------------S----------S---S------SSS-----------
-----------S-----S------------SSS----------------------S-----------S-------S--S-
--------S-----------S---S-SS-S----------------------------------------S-S----S--
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------------------------------------------------------------------S------S--S--S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS---------------S-------------SSSSSSSSSSS------------------------
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--------------------------------------------------------S-----------------------
---------------------------------------------------------------------------S----
----------------------------------------------S----------S----------------------
-----------------------------------------------------S--------------------------
---------------------------------------------S----------------------------------
-----------------------------------------------------S------------------------SS
SSSSS---------------------------------------------------------------------------
-------------------------------S----------------------------------------S-------
---------S------------S---------------S---------------S-------------------------
-----------------------S--------------------S-----------S-----------------------
SSS-----------------------------------S--------------------------------------S--
----SS-------------------------------------------------------S---S--------------
S-------------------S-------------------S-----------S--------------------S------
--------S----------------------------------------------------------------S------
------S--------S------------------S---------S----------------S--------S---------
------------S-------------------------------S-----------------------------------
---------------------------------------------------S----------------------------
S--------------------------S--S-------------------------------------------------
------S-------------
>forward_1603
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---------------------------------------------------------------GGCAACGTCGTAGGAGG
TAC-----------------------------------------------------------------------------
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>reverse_2584
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-----------------------CTTGGGAACGAGCTGATGC--------------------------------------
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