Multiple sequence alignment - TraesCS6B01G221500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G221500 chr6B 100.000 2204 0 0 1 2204 319524336 319526539 0.000000e+00 4071
1 TraesCS6B01G221500 chr6B 83.291 784 68 39 836 1581 100895189 100895947 0.000000e+00 664
2 TraesCS6B01G221500 chr6A 94.976 836 23 9 810 1636 309863401 309864226 0.000000e+00 1293
3 TraesCS6B01G221500 chr6A 87.007 685 50 16 3 657 309817737 309818412 0.000000e+00 736
4 TraesCS6B01G221500 chr6A 92.657 286 16 4 1919 2204 309864203 309864483 7.330000e-110 407
5 TraesCS6B01G221500 chr6D 95.250 821 13 7 835 1646 202265968 202265165 0.000000e+00 1277
6 TraesCS6B01G221500 chr6D 82.723 874 67 30 3 833 202267889 202267057 0.000000e+00 701
7 TraesCS6B01G221500 chr6D 97.266 256 7 0 1949 2204 202265169 202264914 3.360000e-118 435
8 TraesCS6B01G221500 chr6D 91.234 308 18 7 1647 1952 140191849 140192149 5.660000e-111 411
9 TraesCS6B01G221500 chr2D 91.531 307 15 9 1646 1948 99169071 99168772 1.570000e-111 412
10 TraesCS6B01G221500 chr1B 89.032 310 23 10 1647 1952 528227729 528228031 7.430000e-100 374
11 TraesCS6B01G221500 chr4B 82.254 417 60 14 7 413 532626031 532625619 4.500000e-92 348
12 TraesCS6B01G221500 chr7A 86.538 312 31 7 1646 1951 398903922 398903616 1.260000e-87 333
13 TraesCS6B01G221500 chr1D 87.676 284 17 17 1647 1923 87668213 87667941 4.570000e-82 315
14 TraesCS6B01G221500 chr1D 87.633 283 19 15 1646 1923 87673252 87672981 4.570000e-82 315
15 TraesCS6B01G221500 chr3D 87.324 284 18 15 1647 1923 586326105 586325833 2.130000e-80 309
16 TraesCS6B01G221500 chr1A 84.397 282 30 11 1647 1923 281387913 281388185 4.670000e-67 265
17 TraesCS6B01G221500 chr7B 74.520 573 116 23 100 651 357490824 357491387 2.850000e-54 222
18 TraesCS6B01G221500 chr2B 80.634 284 34 16 1647 1923 59096043 59096312 1.330000e-47 200


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G221500 chr6B 319524336 319526539 2203 False 4071.000000 4071 100.000000 1 2204 1 chr6B.!!$F2 2203
1 TraesCS6B01G221500 chr6B 100895189 100895947 758 False 664.000000 664 83.291000 836 1581 1 chr6B.!!$F1 745
2 TraesCS6B01G221500 chr6A 309863401 309864483 1082 False 850.000000 1293 93.816500 810 2204 2 chr6A.!!$F2 1394
3 TraesCS6B01G221500 chr6A 309817737 309818412 675 False 736.000000 736 87.007000 3 657 1 chr6A.!!$F1 654
4 TraesCS6B01G221500 chr6D 202264914 202267889 2975 True 804.333333 1277 91.746333 3 2204 3 chr6D.!!$R1 2201
5 TraesCS6B01G221500 chr7B 357490824 357491387 563 False 222.000000 222 74.520000 100 651 1 chr7B.!!$F1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
774 832 0.035439 GGGGTGGTGTGTCATACCTG 60.035 60.0 18.49 0.0 39.01 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1925 3107 0.039165 CGCGCCTACTGATGCTGATA 60.039 55.0 0.0 0.0 0.0 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.246458 ACAAGCGATAAGAACTTCTCCAC 58.754 43.478 0.00 0.00 0.00 4.02
63 64 5.186992 CGAGATACACAACCCCCATATCATA 59.813 44.000 0.00 0.00 0.00 2.15
65 66 7.401060 AGATACACAACCCCCATATCATAAA 57.599 36.000 0.00 0.00 0.00 1.40
66 67 7.821566 AGATACACAACCCCCATATCATAAAA 58.178 34.615 0.00 0.00 0.00 1.52
112 136 2.223144 CACGAACACACAACACCCTATG 59.777 50.000 0.00 0.00 0.00 2.23
124 148 5.072193 ACAACACCCTATGATCATCATGCTA 59.928 40.000 12.53 0.00 37.70 3.49
135 159 4.558226 TCATCATGCTACATCATACCCC 57.442 45.455 0.00 0.00 0.00 4.95
141 165 5.247337 TCATGCTACATCATACCCCGAAATA 59.753 40.000 0.00 0.00 0.00 1.40
184 208 5.508153 CCCCTAGTCTTGACTCATATTCACG 60.508 48.000 6.55 0.00 0.00 4.35
199 223 2.542020 TCACGAAATCAGAACTGCCA 57.458 45.000 0.00 0.00 0.00 4.92
204 229 4.333649 CACGAAATCAGAACTGCCATGTAT 59.666 41.667 0.00 0.00 0.00 2.29
218 243 4.881273 TGCCATGTATAAGACCATGTTCAC 59.119 41.667 0.00 0.00 37.37 3.18
228 253 3.333680 AGACCATGTTCACCAAACCCTAT 59.666 43.478 0.00 0.00 37.03 2.57
274 299 4.621991 GCAACTAAATAGCCTCGATCTCA 58.378 43.478 0.00 0.00 0.00 3.27
291 316 6.150474 TCGATCTCATAGTAACACACAGACAA 59.850 38.462 0.00 0.00 0.00 3.18
305 330 6.098679 CACACAGACAAAAAGGAACAAATCA 58.901 36.000 0.00 0.00 0.00 2.57
361 386 3.162666 ACTTGACGAACCCTAGATGACA 58.837 45.455 0.00 0.00 0.00 3.58
363 388 2.521126 TGACGAACCCTAGATGACACA 58.479 47.619 0.00 0.00 0.00 3.72
415 441 4.753662 ACGGGAGCCCTAGACGCA 62.754 66.667 3.70 0.00 0.00 5.24
416 442 3.458163 CGGGAGCCCTAGACGCAA 61.458 66.667 3.70 0.00 0.00 4.85
422 448 3.003113 GCCCTAGACGCAACCGAGT 62.003 63.158 0.00 0.00 38.29 4.18
438 464 1.542915 CGAGTTTGACGGAACCCTAGA 59.457 52.381 0.00 0.00 0.00 2.43
439 465 2.670509 CGAGTTTGACGGAACCCTAGAC 60.671 54.545 0.00 0.00 0.00 2.59
440 466 2.298163 GAGTTTGACGGAACCCTAGACA 59.702 50.000 0.00 0.00 0.00 3.41
486 512 5.482908 AGACACTAGACACCTGCAAATAAG 58.517 41.667 0.00 0.00 0.00 1.73
550 605 0.739561 GAGGACCGTCGACTGCTTAT 59.260 55.000 14.70 0.00 0.00 1.73
558 613 0.975556 TCGACTGCTTATGAGGGGCA 60.976 55.000 0.00 0.00 34.66 5.36
561 616 1.530771 CTGCTTATGAGGGGCAGCT 59.469 57.895 0.00 0.00 45.04 4.24
570 625 2.113986 GGGGCAGCTGTGTCTTGT 59.886 61.111 16.64 0.00 0.00 3.16
582 638 2.496070 TGTGTCTTGTCGGATTAGGAGG 59.504 50.000 0.00 0.00 0.00 4.30
602 658 1.826385 CCCGAGGAAGAAGCAAATGT 58.174 50.000 0.00 0.00 0.00 2.71
657 713 4.453819 CAGATGAAGAGGAACGAAAGCTTT 59.546 41.667 12.53 12.53 0.00 3.51
658 714 5.049129 CAGATGAAGAGGAACGAAAGCTTTT 60.049 40.000 14.05 0.00 0.00 2.27
659 715 5.532779 AGATGAAGAGGAACGAAAGCTTTTT 59.467 36.000 14.05 4.32 0.00 1.94
660 716 5.169836 TGAAGAGGAACGAAAGCTTTTTC 57.830 39.130 14.05 13.49 0.00 2.29
661 717 4.881850 TGAAGAGGAACGAAAGCTTTTTCT 59.118 37.500 14.05 0.97 0.00 2.52
662 718 5.357032 TGAAGAGGAACGAAAGCTTTTTCTT 59.643 36.000 14.05 10.34 0.00 2.52
663 719 5.836821 AGAGGAACGAAAGCTTTTTCTTT 57.163 34.783 14.05 1.11 38.85 2.52
664 720 6.208988 AGAGGAACGAAAGCTTTTTCTTTT 57.791 33.333 14.05 3.29 36.50 2.27
665 721 6.631016 AGAGGAACGAAAGCTTTTTCTTTTT 58.369 32.000 14.05 0.80 36.50 1.94
689 745 9.956720 TTTTGAGAAGAAAAGCTTTCTTATCTG 57.043 29.630 27.17 0.00 43.41 2.90
690 746 8.908786 TTGAGAAGAAAAGCTTTCTTATCTGA 57.091 30.769 27.17 19.81 43.41 3.27
700 756 4.491120 GCTTTCTTATCTGAAGCGACGAAC 60.491 45.833 0.00 0.00 0.00 3.95
705 761 0.110328 TCTGAAGCGACGAACGAGAC 60.110 55.000 0.00 2.29 45.77 3.36
713 769 1.917151 GACGAACGAGACGCACGAAC 61.917 60.000 14.25 0.00 34.36 3.95
717 773 2.870161 CGAGACGCACGAACGAGG 60.870 66.667 8.71 0.00 36.70 4.63
753 809 3.671008 AAAACGGGCCCAAATAAAGTC 57.329 42.857 24.92 0.00 0.00 3.01
754 810 2.296073 AACGGGCCCAAATAAAGTCA 57.704 45.000 24.92 0.00 0.00 3.41
766 824 1.513858 TAAAGTCAGGGGTGGTGTGT 58.486 50.000 0.00 0.00 0.00 3.72
768 826 0.986019 AAGTCAGGGGTGGTGTGTCA 60.986 55.000 0.00 0.00 0.00 3.58
774 832 0.035439 GGGGTGGTGTGTCATACCTG 60.035 60.000 18.49 0.00 39.01 4.00
785 843 4.271696 TGTCATACCTGGACACTTTGAG 57.728 45.455 0.00 0.00 40.16 3.02
787 845 3.008049 GTCATACCTGGACACTTTGAGGT 59.992 47.826 0.00 0.00 41.77 3.85
795 853 2.673368 GGACACTTTGAGGTAGAATGCG 59.327 50.000 0.00 0.00 0.00 4.73
811 869 7.012421 GGTAGAATGCGTCAAATAGGATTTTCT 59.988 37.037 0.00 0.00 0.00 2.52
816 874 4.156008 GCGTCAAATAGGATTTTCTGTGGT 59.844 41.667 0.00 0.00 0.00 4.16
833 891 3.513912 TGTGGTTCGAACTCTATCACCAT 59.486 43.478 26.32 0.00 36.70 3.55
895 2044 7.119387 GGGCCCTGTATATTAATATGCTTCTT 58.881 38.462 17.04 0.00 0.00 2.52
931 2084 0.755698 TGTCCTATCCTCCTCGCCAC 60.756 60.000 0.00 0.00 0.00 5.01
958 2112 7.685481 TGTAGAGAAAGAGAAGAGAGAGAGAA 58.315 38.462 0.00 0.00 0.00 2.87
959 2113 8.160765 TGTAGAGAAAGAGAAGAGAGAGAGAAA 58.839 37.037 0.00 0.00 0.00 2.52
960 2114 7.693969 AGAGAAAGAGAAGAGAGAGAGAAAG 57.306 40.000 0.00 0.00 0.00 2.62
961 2115 7.461749 AGAGAAAGAGAAGAGAGAGAGAAAGA 58.538 38.462 0.00 0.00 0.00 2.52
962 2116 7.609532 AGAGAAAGAGAAGAGAGAGAGAAAGAG 59.390 40.741 0.00 0.00 0.00 2.85
963 2117 7.461749 AGAAAGAGAAGAGAGAGAGAAAGAGA 58.538 38.462 0.00 0.00 0.00 3.10
964 2118 7.944554 AGAAAGAGAAGAGAGAGAGAAAGAGAA 59.055 37.037 0.00 0.00 0.00 2.87
965 2119 7.693969 AAGAGAAGAGAGAGAGAAAGAGAAG 57.306 40.000 0.00 0.00 0.00 2.85
966 2120 7.020827 AGAGAAGAGAGAGAGAAAGAGAAGA 57.979 40.000 0.00 0.00 0.00 2.87
974 2128 5.749462 AGAGAGAAAGAGAAGAGAGAGAGG 58.251 45.833 0.00 0.00 0.00 3.69
976 2130 3.954258 GAGAAAGAGAAGAGAGAGAGGGG 59.046 52.174 0.00 0.00 0.00 4.79
1074 2228 3.403558 GAGTGGAGGAGGCACCCC 61.404 72.222 0.00 0.00 40.05 4.95
1137 2291 2.746277 GCCATCGTCGCCTTTGGT 60.746 61.111 0.00 0.00 0.00 3.67
1641 2823 0.460987 ATCTCAAGGCGCTCTTTCCG 60.461 55.000 7.64 0.00 32.41 4.30
1642 2824 1.374758 CTCAAGGCGCTCTTTCCGT 60.375 57.895 7.64 0.00 32.41 4.69
1643 2825 1.630244 CTCAAGGCGCTCTTTCCGTG 61.630 60.000 7.64 0.00 32.41 4.94
1644 2826 1.961277 CAAGGCGCTCTTTCCGTGT 60.961 57.895 7.64 0.00 32.41 4.49
1645 2827 0.669318 CAAGGCGCTCTTTCCGTGTA 60.669 55.000 7.64 0.00 32.41 2.90
1646 2828 0.249398 AAGGCGCTCTTTCCGTGTAT 59.751 50.000 7.64 0.00 29.99 2.29
1647 2829 0.460284 AGGCGCTCTTTCCGTGTATG 60.460 55.000 7.64 0.00 0.00 2.39
1648 2830 0.739813 GGCGCTCTTTCCGTGTATGT 60.740 55.000 7.64 0.00 0.00 2.29
1649 2831 0.645868 GCGCTCTTTCCGTGTATGTC 59.354 55.000 0.00 0.00 0.00 3.06
1650 2832 1.990799 CGCTCTTTCCGTGTATGTCA 58.009 50.000 0.00 0.00 0.00 3.58
1651 2833 2.540515 CGCTCTTTCCGTGTATGTCAT 58.459 47.619 0.00 0.00 0.00 3.06
1652 2834 2.282555 CGCTCTTTCCGTGTATGTCATG 59.717 50.000 0.00 0.00 0.00 3.07
1653 2835 2.030946 GCTCTTTCCGTGTATGTCATGC 59.969 50.000 0.00 0.00 0.00 4.06
1654 2836 2.609459 CTCTTTCCGTGTATGTCATGCC 59.391 50.000 0.00 0.00 0.00 4.40
1655 2837 1.670811 CTTTCCGTGTATGTCATGCCC 59.329 52.381 0.00 0.00 0.00 5.36
1656 2838 0.908910 TTCCGTGTATGTCATGCCCT 59.091 50.000 0.00 0.00 0.00 5.19
1657 2839 0.177836 TCCGTGTATGTCATGCCCTG 59.822 55.000 0.00 0.00 0.00 4.45
1658 2840 0.815213 CCGTGTATGTCATGCCCTGG 60.815 60.000 0.00 0.00 0.00 4.45
1659 2841 0.177836 CGTGTATGTCATGCCCTGGA 59.822 55.000 0.00 0.00 0.00 3.86
1660 2842 1.202687 CGTGTATGTCATGCCCTGGAT 60.203 52.381 0.00 0.00 0.00 3.41
1661 2843 2.498167 GTGTATGTCATGCCCTGGATC 58.502 52.381 0.00 0.00 0.00 3.36
1662 2844 2.105477 GTGTATGTCATGCCCTGGATCT 59.895 50.000 0.00 0.00 0.00 2.75
1663 2845 2.369860 TGTATGTCATGCCCTGGATCTC 59.630 50.000 0.00 0.00 0.00 2.75
1664 2846 0.395686 ATGTCATGCCCTGGATCTCG 59.604 55.000 0.00 0.00 0.00 4.04
1665 2847 0.687427 TGTCATGCCCTGGATCTCGA 60.687 55.000 0.00 0.00 0.00 4.04
1666 2848 0.683973 GTCATGCCCTGGATCTCGAT 59.316 55.000 0.00 0.00 0.00 3.59
1667 2849 0.972134 TCATGCCCTGGATCTCGATC 59.028 55.000 0.00 0.00 37.11 3.69
1668 2850 0.975135 CATGCCCTGGATCTCGATCT 59.025 55.000 6.84 0.00 37.92 2.75
1669 2851 2.174360 CATGCCCTGGATCTCGATCTA 58.826 52.381 6.84 0.24 37.92 1.98
1670 2852 1.916506 TGCCCTGGATCTCGATCTAG 58.083 55.000 11.91 11.91 43.48 2.43
1671 2853 1.425448 TGCCCTGGATCTCGATCTAGA 59.575 52.381 18.37 0.00 45.75 2.43
1672 2854 2.158460 TGCCCTGGATCTCGATCTAGAA 60.158 50.000 18.37 4.68 45.75 2.10
1673 2855 3.096092 GCCCTGGATCTCGATCTAGAAT 58.904 50.000 18.37 0.00 45.75 2.40
1674 2856 3.513515 GCCCTGGATCTCGATCTAGAATT 59.486 47.826 18.37 0.00 45.75 2.17
1675 2857 4.020662 GCCCTGGATCTCGATCTAGAATTT 60.021 45.833 18.37 0.00 45.75 1.82
1676 2858 5.477510 CCCTGGATCTCGATCTAGAATTTG 58.522 45.833 18.37 4.78 45.75 2.32
1677 2859 5.477510 CCTGGATCTCGATCTAGAATTTGG 58.522 45.833 18.37 1.87 45.75 3.28
1678 2860 5.474578 TGGATCTCGATCTAGAATTTGGG 57.525 43.478 0.45 0.00 37.92 4.12
1679 2861 4.901849 TGGATCTCGATCTAGAATTTGGGT 59.098 41.667 0.45 0.00 37.92 4.51
1680 2862 5.221521 TGGATCTCGATCTAGAATTTGGGTG 60.222 44.000 0.45 0.00 37.92 4.61
1681 2863 5.011125 GGATCTCGATCTAGAATTTGGGTGA 59.989 44.000 0.45 0.00 37.92 4.02
1682 2864 5.521906 TCTCGATCTAGAATTTGGGTGAG 57.478 43.478 0.00 0.00 0.00 3.51
1683 2865 4.342378 TCTCGATCTAGAATTTGGGTGAGG 59.658 45.833 0.00 0.00 0.00 3.86
1684 2866 4.286707 TCGATCTAGAATTTGGGTGAGGA 58.713 43.478 0.00 0.00 0.00 3.71
1685 2867 4.342378 TCGATCTAGAATTTGGGTGAGGAG 59.658 45.833 0.00 0.00 0.00 3.69
1686 2868 4.502259 CGATCTAGAATTTGGGTGAGGAGG 60.502 50.000 0.00 0.00 0.00 4.30
1687 2869 4.074799 TCTAGAATTTGGGTGAGGAGGA 57.925 45.455 0.00 0.00 0.00 3.71
1688 2870 4.033709 TCTAGAATTTGGGTGAGGAGGAG 58.966 47.826 0.00 0.00 0.00 3.69
1689 2871 2.921221 AGAATTTGGGTGAGGAGGAGA 58.079 47.619 0.00 0.00 0.00 3.71
1690 2872 2.843113 AGAATTTGGGTGAGGAGGAGAG 59.157 50.000 0.00 0.00 0.00 3.20
1691 2873 2.649742 ATTTGGGTGAGGAGGAGAGA 57.350 50.000 0.00 0.00 0.00 3.10
1692 2874 2.415983 TTTGGGTGAGGAGGAGAGAA 57.584 50.000 0.00 0.00 0.00 2.87
1693 2875 1.944177 TTGGGTGAGGAGGAGAGAAG 58.056 55.000 0.00 0.00 0.00 2.85
1694 2876 0.616111 TGGGTGAGGAGGAGAGAAGC 60.616 60.000 0.00 0.00 0.00 3.86
1695 2877 0.616111 GGGTGAGGAGGAGAGAAGCA 60.616 60.000 0.00 0.00 0.00 3.91
1696 2878 0.823460 GGTGAGGAGGAGAGAAGCAG 59.177 60.000 0.00 0.00 0.00 4.24
1697 2879 1.618345 GGTGAGGAGGAGAGAAGCAGA 60.618 57.143 0.00 0.00 0.00 4.26
1698 2880 1.750778 GTGAGGAGGAGAGAAGCAGAG 59.249 57.143 0.00 0.00 0.00 3.35
1699 2881 1.357420 TGAGGAGGAGAGAAGCAGAGT 59.643 52.381 0.00 0.00 0.00 3.24
1700 2882 2.578480 TGAGGAGGAGAGAAGCAGAGTA 59.422 50.000 0.00 0.00 0.00 2.59
1701 2883 3.214328 GAGGAGGAGAGAAGCAGAGTAG 58.786 54.545 0.00 0.00 0.00 2.57
1702 2884 2.091885 AGGAGGAGAGAAGCAGAGTAGG 60.092 54.545 0.00 0.00 0.00 3.18
1703 2885 2.357777 GGAGGAGAGAAGCAGAGTAGGT 60.358 54.545 0.00 0.00 0.00 3.08
1704 2886 2.687935 GAGGAGAGAAGCAGAGTAGGTG 59.312 54.545 0.00 0.00 0.00 4.00
1705 2887 2.310349 AGGAGAGAAGCAGAGTAGGTGA 59.690 50.000 0.00 0.00 0.00 4.02
1706 2888 2.687935 GGAGAGAAGCAGAGTAGGTGAG 59.312 54.545 0.00 0.00 0.00 3.51
1707 2889 2.687935 GAGAGAAGCAGAGTAGGTGAGG 59.312 54.545 0.00 0.00 0.00 3.86
1708 2890 1.754226 GAGAAGCAGAGTAGGTGAGGG 59.246 57.143 0.00 0.00 0.00 4.30
1709 2891 1.359474 AGAAGCAGAGTAGGTGAGGGA 59.641 52.381 0.00 0.00 0.00 4.20
1710 2892 1.754226 GAAGCAGAGTAGGTGAGGGAG 59.246 57.143 0.00 0.00 0.00 4.30
1711 2893 1.003646 AGCAGAGTAGGTGAGGGAGA 58.996 55.000 0.00 0.00 0.00 3.71
1712 2894 1.064017 AGCAGAGTAGGTGAGGGAGAG 60.064 57.143 0.00 0.00 0.00 3.20
1713 2895 1.064314 GCAGAGTAGGTGAGGGAGAGA 60.064 57.143 0.00 0.00 0.00 3.10
1714 2896 2.650322 CAGAGTAGGTGAGGGAGAGAC 58.350 57.143 0.00 0.00 0.00 3.36
1715 2897 2.241176 CAGAGTAGGTGAGGGAGAGACT 59.759 54.545 0.00 0.00 0.00 3.24
1716 2898 2.923629 AGAGTAGGTGAGGGAGAGACTT 59.076 50.000 0.00 0.00 0.00 3.01
1717 2899 3.020984 GAGTAGGTGAGGGAGAGACTTG 58.979 54.545 0.00 0.00 0.00 3.16
1718 2900 2.104170 GTAGGTGAGGGAGAGACTTGG 58.896 57.143 0.00 0.00 0.00 3.61
1719 2901 0.787084 AGGTGAGGGAGAGACTTGGA 59.213 55.000 0.00 0.00 0.00 3.53
1720 2902 1.190643 GGTGAGGGAGAGACTTGGAG 58.809 60.000 0.00 0.00 0.00 3.86
1721 2903 1.190643 GTGAGGGAGAGACTTGGAGG 58.809 60.000 0.00 0.00 0.00 4.30
1722 2904 1.084866 TGAGGGAGAGACTTGGAGGA 58.915 55.000 0.00 0.00 0.00 3.71
1723 2905 1.433199 TGAGGGAGAGACTTGGAGGAA 59.567 52.381 0.00 0.00 0.00 3.36
1724 2906 2.107366 GAGGGAGAGACTTGGAGGAAG 58.893 57.143 0.00 0.00 37.73 3.46
1725 2907 1.199615 GGGAGAGACTTGGAGGAAGG 58.800 60.000 0.00 0.00 35.78 3.46
1726 2908 1.199615 GGAGAGACTTGGAGGAAGGG 58.800 60.000 0.00 0.00 35.78 3.95
1727 2909 1.273324 GGAGAGACTTGGAGGAAGGGA 60.273 57.143 0.00 0.00 35.78 4.20
1728 2910 2.541466 GAGAGACTTGGAGGAAGGGAA 58.459 52.381 0.00 0.00 35.78 3.97
1729 2911 2.907042 GAGAGACTTGGAGGAAGGGAAA 59.093 50.000 0.00 0.00 35.78 3.13
1730 2912 3.521531 GAGAGACTTGGAGGAAGGGAAAT 59.478 47.826 0.00 0.00 35.78 2.17
1731 2913 3.265479 AGAGACTTGGAGGAAGGGAAATG 59.735 47.826 0.00 0.00 35.78 2.32
1732 2914 2.310052 AGACTTGGAGGAAGGGAAATGG 59.690 50.000 0.00 0.00 35.78 3.16
1733 2915 2.308866 GACTTGGAGGAAGGGAAATGGA 59.691 50.000 0.00 0.00 35.78 3.41
1734 2916 2.721906 ACTTGGAGGAAGGGAAATGGAA 59.278 45.455 0.00 0.00 35.78 3.53
1735 2917 3.337909 ACTTGGAGGAAGGGAAATGGAAT 59.662 43.478 0.00 0.00 35.78 3.01
1736 2918 4.202825 ACTTGGAGGAAGGGAAATGGAATT 60.203 41.667 0.00 0.00 35.02 2.17
1737 2919 3.711863 TGGAGGAAGGGAAATGGAATTG 58.288 45.455 0.00 0.00 36.10 2.32
1738 2920 2.432146 GGAGGAAGGGAAATGGAATTGC 59.568 50.000 0.00 0.00 36.10 3.56
1739 2921 3.099141 GAGGAAGGGAAATGGAATTGCA 58.901 45.455 0.79 0.79 36.10 4.08
1740 2922 3.708121 GAGGAAGGGAAATGGAATTGCAT 59.292 43.478 6.63 6.63 36.10 3.96
1741 2923 4.106324 AGGAAGGGAAATGGAATTGCATT 58.894 39.130 18.40 18.40 36.10 3.56
1742 2924 4.162888 AGGAAGGGAAATGGAATTGCATTC 59.837 41.667 23.30 16.33 39.64 2.67
1743 2925 4.080975 GGAAGGGAAATGGAATTGCATTCA 60.081 41.667 23.30 0.00 41.33 2.57
1744 2926 5.397109 GGAAGGGAAATGGAATTGCATTCAT 60.397 40.000 23.30 10.70 41.33 2.57
1745 2927 5.286267 AGGGAAATGGAATTGCATTCATC 57.714 39.130 23.30 17.76 41.03 2.92
1746 2928 4.717778 AGGGAAATGGAATTGCATTCATCA 59.282 37.500 23.30 0.00 41.03 3.07
1747 2929 4.812626 GGGAAATGGAATTGCATTCATCAC 59.187 41.667 23.30 16.16 41.03 3.06
1748 2930 5.395990 GGGAAATGGAATTGCATTCATCACT 60.396 40.000 23.30 8.60 41.03 3.41
1749 2931 5.751990 GGAAATGGAATTGCATTCATCACTC 59.248 40.000 23.30 15.89 41.03 3.51
1750 2932 4.563337 ATGGAATTGCATTCATCACTCG 57.437 40.909 6.63 0.00 41.03 4.18
1751 2933 2.097954 TGGAATTGCATTCATCACTCGC 59.902 45.455 0.00 0.00 41.03 5.03
1752 2934 2.357009 GGAATTGCATTCATCACTCGCT 59.643 45.455 9.92 0.00 41.03 4.93
1753 2935 3.360533 GAATTGCATTCATCACTCGCTG 58.639 45.455 0.00 0.00 39.09 5.18
1754 2936 0.448990 TTGCATTCATCACTCGCTGC 59.551 50.000 0.00 0.00 0.00 5.25
1755 2937 1.354506 GCATTCATCACTCGCTGCC 59.645 57.895 0.00 0.00 0.00 4.85
1756 2938 1.640069 CATTCATCACTCGCTGCCG 59.360 57.895 0.00 0.00 0.00 5.69
1757 2939 0.807275 CATTCATCACTCGCTGCCGA 60.807 55.000 0.00 0.00 42.01 5.54
1758 2940 0.105593 ATTCATCACTCGCTGCCGAT 59.894 50.000 0.00 0.00 43.47 4.18
1759 2941 0.528466 TTCATCACTCGCTGCCGATC 60.528 55.000 0.00 0.00 43.47 3.69
1760 2942 1.067084 CATCACTCGCTGCCGATCT 59.933 57.895 0.00 0.00 43.47 2.75
1761 2943 1.067084 ATCACTCGCTGCCGATCTG 59.933 57.895 0.00 0.00 43.47 2.90
1762 2944 1.387295 ATCACTCGCTGCCGATCTGA 61.387 55.000 0.00 0.26 43.47 3.27
1763 2945 1.067084 CACTCGCTGCCGATCTGAT 59.933 57.895 0.00 0.00 43.47 2.90
1764 2946 0.938637 CACTCGCTGCCGATCTGATC 60.939 60.000 7.60 7.60 43.47 2.92
1776 2958 3.256285 GATCTGATCGGTGTCTCGTAC 57.744 52.381 1.26 0.00 0.00 3.67
1777 2959 2.103537 TCTGATCGGTGTCTCGTACA 57.896 50.000 0.42 0.00 35.06 2.90
1778 2960 2.640184 TCTGATCGGTGTCTCGTACAT 58.360 47.619 0.42 0.00 41.10 2.29
1779 2961 3.800531 TCTGATCGGTGTCTCGTACATA 58.199 45.455 0.42 0.00 41.10 2.29
1780 2962 4.193865 TCTGATCGGTGTCTCGTACATAA 58.806 43.478 0.42 0.00 41.10 1.90
1781 2963 4.272748 TCTGATCGGTGTCTCGTACATAAG 59.727 45.833 0.42 0.00 41.10 1.73
1782 2964 3.943381 TGATCGGTGTCTCGTACATAAGT 59.057 43.478 0.00 0.00 41.10 2.24
1783 2965 5.118286 TGATCGGTGTCTCGTACATAAGTA 58.882 41.667 0.00 0.00 41.10 2.24
1784 2966 5.235831 TGATCGGTGTCTCGTACATAAGTAG 59.764 44.000 0.00 0.00 41.10 2.57
1785 2967 3.310774 TCGGTGTCTCGTACATAAGTAGC 59.689 47.826 0.00 0.00 41.10 3.58
1786 2968 3.311871 CGGTGTCTCGTACATAAGTAGCT 59.688 47.826 0.00 0.00 41.10 3.32
1787 2969 4.599047 GGTGTCTCGTACATAAGTAGCTG 58.401 47.826 0.00 0.00 41.10 4.24
1788 2970 4.497674 GGTGTCTCGTACATAAGTAGCTGG 60.498 50.000 0.00 0.00 41.10 4.85
1789 2971 3.066342 TGTCTCGTACATAAGTAGCTGGC 59.934 47.826 0.00 0.00 31.43 4.85
1790 2972 2.621998 TCTCGTACATAAGTAGCTGGCC 59.378 50.000 0.00 0.00 0.00 5.36
1791 2973 1.684983 TCGTACATAAGTAGCTGGCCC 59.315 52.381 0.00 0.00 0.00 5.80
1792 2974 1.270147 CGTACATAAGTAGCTGGCCCC 60.270 57.143 0.00 0.00 0.00 5.80
1793 2975 2.047830 GTACATAAGTAGCTGGCCCCT 58.952 52.381 0.00 0.00 0.00 4.79
1794 2976 1.132500 ACATAAGTAGCTGGCCCCTC 58.868 55.000 0.00 0.00 0.00 4.30
1795 2977 1.131638 CATAAGTAGCTGGCCCCTCA 58.868 55.000 0.00 0.00 0.00 3.86
1796 2978 1.701847 CATAAGTAGCTGGCCCCTCAT 59.298 52.381 0.00 0.00 0.00 2.90
1797 2979 1.131638 TAAGTAGCTGGCCCCTCATG 58.868 55.000 0.00 0.00 0.00 3.07
1798 2980 1.639635 AAGTAGCTGGCCCCTCATGG 61.640 60.000 0.00 0.00 0.00 3.66
1810 2992 1.507140 CCTCATGGGCTACCCTTACA 58.493 55.000 3.93 0.00 45.70 2.41
1811 2993 2.057922 CCTCATGGGCTACCCTTACAT 58.942 52.381 3.93 0.00 45.70 2.29
1812 2994 2.224621 CCTCATGGGCTACCCTTACATG 60.225 54.545 3.93 0.00 45.70 3.21
1813 2995 1.774254 TCATGGGCTACCCTTACATGG 59.226 52.381 3.93 0.00 45.70 3.66
1814 2996 0.478507 ATGGGCTACCCTTACATGGC 59.521 55.000 3.93 0.00 45.70 4.40
1815 2997 1.150764 GGGCTACCCTTACATGGCC 59.849 63.158 0.00 0.00 41.34 5.36
1816 2998 1.353394 GGGCTACCCTTACATGGCCT 61.353 60.000 3.32 0.00 41.93 5.19
1817 2999 0.108774 GGCTACCCTTACATGGCCTC 59.891 60.000 3.32 0.00 39.29 4.70
1818 3000 0.108774 GCTACCCTTACATGGCCTCC 59.891 60.000 3.32 0.00 0.00 4.30
1819 3001 0.393077 CTACCCTTACATGGCCTCCG 59.607 60.000 3.32 0.00 0.00 4.63
1820 3002 1.052124 TACCCTTACATGGCCTCCGG 61.052 60.000 3.32 0.00 0.00 5.14
1835 3017 4.302509 CGGCCCCACACACGTACA 62.303 66.667 0.00 0.00 0.00 2.90
1836 3018 2.667199 GGCCCCACACACGTACAC 60.667 66.667 0.00 0.00 0.00 2.90
1837 3019 2.109387 GCCCCACACACGTACACA 59.891 61.111 0.00 0.00 0.00 3.72
1838 3020 2.248835 GCCCCACACACGTACACAC 61.249 63.158 0.00 0.00 0.00 3.82
1839 3021 1.444250 CCCCACACACGTACACACT 59.556 57.895 0.00 0.00 0.00 3.55
1840 3022 0.878523 CCCCACACACGTACACACTG 60.879 60.000 0.00 0.00 0.00 3.66
1841 3023 0.878523 CCCACACACGTACACACTGG 60.879 60.000 0.00 0.00 0.00 4.00
1842 3024 1.495584 CCACACACGTACACACTGGC 61.496 60.000 0.00 0.00 0.00 4.85
1843 3025 1.227438 ACACACGTACACACTGGCC 60.227 57.895 0.00 0.00 0.00 5.36
1844 3026 1.959226 CACACGTACACACTGGCCC 60.959 63.158 0.00 0.00 0.00 5.80
1845 3027 2.423874 CACGTACACACTGGCCCA 59.576 61.111 0.00 0.00 0.00 5.36
1846 3028 1.227704 CACGTACACACTGGCCCAA 60.228 57.895 0.00 0.00 0.00 4.12
1847 3029 0.816018 CACGTACACACTGGCCCAAA 60.816 55.000 0.00 0.00 0.00 3.28
1848 3030 0.534203 ACGTACACACTGGCCCAAAG 60.534 55.000 0.00 0.00 0.00 2.77
1849 3031 1.234615 CGTACACACTGGCCCAAAGG 61.235 60.000 0.00 0.00 0.00 3.11
1859 3041 3.047735 CCCAAAGGGCCGAAACAC 58.952 61.111 0.00 0.00 35.35 3.32
1860 3042 1.830408 CCCAAAGGGCCGAAACACA 60.830 57.895 0.00 0.00 35.35 3.72
1861 3043 1.362355 CCAAAGGGCCGAAACACAC 59.638 57.895 0.00 0.00 0.00 3.82
1862 3044 1.388065 CCAAAGGGCCGAAACACACA 61.388 55.000 0.00 0.00 0.00 3.72
1863 3045 0.248866 CAAAGGGCCGAAACACACAC 60.249 55.000 0.00 0.00 0.00 3.82
1864 3046 1.720694 AAAGGGCCGAAACACACACG 61.721 55.000 0.00 0.00 0.00 4.49
1865 3047 2.589442 GGGCCGAAACACACACGA 60.589 61.111 0.00 0.00 0.00 4.35
1866 3048 2.629763 GGCCGAAACACACACGAC 59.370 61.111 0.00 0.00 0.00 4.34
1867 3049 2.244382 GCCGAAACACACACGACG 59.756 61.111 0.00 0.00 0.00 5.12
1868 3050 2.519175 GCCGAAACACACACGACGT 61.519 57.895 0.00 0.00 0.00 4.34
1869 3051 2.000587 CCGAAACACACACGACGTT 58.999 52.632 0.00 0.00 0.00 3.99
1870 3052 0.314738 CCGAAACACACACGACGTTG 60.315 55.000 0.00 0.00 0.00 4.10
1871 3053 0.917648 CGAAACACACACGACGTTGC 60.918 55.000 1.65 0.00 0.00 4.17
1872 3054 0.095589 GAAACACACACGACGTTGCA 59.904 50.000 1.65 0.00 0.00 4.08
1873 3055 0.096281 AAACACACACGACGTTGCAG 59.904 50.000 1.65 0.00 0.00 4.41
1874 3056 1.017177 AACACACACGACGTTGCAGT 61.017 50.000 1.65 0.00 0.00 4.40
1875 3057 1.017177 ACACACACGACGTTGCAGTT 61.017 50.000 1.65 0.00 0.00 3.16
1876 3058 0.315059 CACACACGACGTTGCAGTTC 60.315 55.000 1.65 0.00 0.00 3.01
1877 3059 0.738063 ACACACGACGTTGCAGTTCA 60.738 50.000 1.65 0.00 0.00 3.18
1878 3060 0.043053 CACACGACGTTGCAGTTCAG 60.043 55.000 1.65 0.00 0.00 3.02
1879 3061 0.459585 ACACGACGTTGCAGTTCAGT 60.460 50.000 1.65 0.00 0.00 3.41
1880 3062 0.650512 CACGACGTTGCAGTTCAGTT 59.349 50.000 1.65 0.00 0.00 3.16
1881 3063 1.855978 CACGACGTTGCAGTTCAGTTA 59.144 47.619 1.65 0.00 0.00 2.24
1882 3064 2.475111 CACGACGTTGCAGTTCAGTTAT 59.525 45.455 1.65 0.00 0.00 1.89
1883 3065 2.729882 ACGACGTTGCAGTTCAGTTATC 59.270 45.455 1.65 0.00 0.00 1.75
1884 3066 2.987149 CGACGTTGCAGTTCAGTTATCT 59.013 45.455 0.00 0.00 0.00 1.98
1885 3067 3.181540 CGACGTTGCAGTTCAGTTATCTG 60.182 47.826 0.00 0.00 42.54 2.90
1899 3081 6.935167 TCAGTTATCTGAATACTGAACTGCA 58.065 36.000 17.56 0.00 46.17 4.41
1900 3082 6.813649 TCAGTTATCTGAATACTGAACTGCAC 59.186 38.462 17.56 0.00 46.17 4.57
1901 3083 6.815641 CAGTTATCTGAATACTGAACTGCACT 59.184 38.462 14.00 0.00 43.76 4.40
1902 3084 7.332926 CAGTTATCTGAATACTGAACTGCACTT 59.667 37.037 14.00 0.00 43.76 3.16
1903 3085 7.332926 AGTTATCTGAATACTGAACTGCACTTG 59.667 37.037 0.00 0.00 0.00 3.16
1904 3086 4.960938 TCTGAATACTGAACTGCACTTGT 58.039 39.130 0.00 0.00 0.00 3.16
1905 3087 5.368145 TCTGAATACTGAACTGCACTTGTT 58.632 37.500 0.00 0.00 0.00 2.83
1906 3088 5.466728 TCTGAATACTGAACTGCACTTGTTC 59.533 40.000 9.71 9.71 42.77 3.18
1911 3093 2.288666 TGAACTGCACTTGTTCAGTCC 58.711 47.619 14.14 0.00 45.77 3.85
1912 3094 1.261619 GAACTGCACTTGTTCAGTCCG 59.738 52.381 11.33 0.00 42.19 4.79
1913 3095 1.160329 ACTGCACTTGTTCAGTCCGC 61.160 55.000 0.48 0.00 39.11 5.54
1914 3096 0.882042 CTGCACTTGTTCAGTCCGCT 60.882 55.000 0.00 0.00 30.92 5.52
1915 3097 1.159713 TGCACTTGTTCAGTCCGCTG 61.160 55.000 0.00 0.00 43.87 5.18
1916 3098 1.571460 CACTTGTTCAGTCCGCTGC 59.429 57.895 0.00 0.00 42.29 5.25
1917 3099 0.882042 CACTTGTTCAGTCCGCTGCT 60.882 55.000 0.00 0.00 42.29 4.24
1918 3100 0.882042 ACTTGTTCAGTCCGCTGCTG 60.882 55.000 0.00 0.00 42.29 4.41
1919 3101 0.601046 CTTGTTCAGTCCGCTGCTGA 60.601 55.000 0.00 0.00 42.29 4.26
1920 3102 0.035317 TTGTTCAGTCCGCTGCTGAT 59.965 50.000 0.00 0.00 41.87 2.90
1921 3103 0.671472 TGTTCAGTCCGCTGCTGATG 60.671 55.000 0.00 0.00 41.87 3.07
1922 3104 1.742880 TTCAGTCCGCTGCTGATGC 60.743 57.895 0.00 0.00 41.87 3.91
1923 3105 2.125229 CAGTCCGCTGCTGATGCT 60.125 61.111 0.00 0.00 40.48 3.79
1924 3106 2.125229 AGTCCGCTGCTGATGCTG 60.125 61.111 0.00 0.00 40.48 4.41
1925 3107 2.435586 GTCCGCTGCTGATGCTGT 60.436 61.111 0.00 0.00 39.81 4.40
1926 3108 1.153568 GTCCGCTGCTGATGCTGTA 60.154 57.895 0.00 0.00 39.81 2.74
1927 3109 0.531532 GTCCGCTGCTGATGCTGTAT 60.532 55.000 0.00 0.00 39.81 2.29
1928 3110 0.249615 TCCGCTGCTGATGCTGTATC 60.250 55.000 0.00 0.00 39.81 2.24
1929 3111 0.531311 CCGCTGCTGATGCTGTATCA 60.531 55.000 8.17 8.17 43.40 2.15
1942 3124 2.670479 CTGTATCAGCATCAGTAGGCG 58.330 52.381 0.00 0.00 37.52 5.52
1943 3125 1.269778 TGTATCAGCATCAGTAGGCGC 60.270 52.381 0.00 0.00 37.52 6.53
1944 3126 0.039165 TATCAGCATCAGTAGGCGCG 60.039 55.000 0.00 0.00 37.52 6.86
1945 3127 1.738346 ATCAGCATCAGTAGGCGCGA 61.738 55.000 12.10 0.00 37.52 5.87
1946 3128 2.105128 AGCATCAGTAGGCGCGAC 59.895 61.111 12.10 7.34 37.52 5.19
1947 3129 2.202743 GCATCAGTAGGCGCGACA 60.203 61.111 17.71 0.00 0.00 4.35
2018 3200 0.463620 GATCACTCAGACAGGGGAGC 59.536 60.000 0.00 0.00 34.48 4.70
2137 3319 7.559590 ACAGATGCTGATTAAATTGTAGACC 57.440 36.000 0.82 0.00 35.18 3.85
2148 3330 1.121378 TTGTAGACCCGACAACACCA 58.879 50.000 0.00 0.00 31.92 4.17
2152 3334 0.106149 AGACCCGACAACACCACTTC 59.894 55.000 0.00 0.00 0.00 3.01
2198 3380 2.170397 TGTTCTGTTGAGCTCTGGAACA 59.830 45.455 25.03 25.03 40.04 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 0.837272 ATGGGGGTTGTGTATCTCGG 59.163 55.000 0.00 0.00 0.00 4.63
65 66 4.817318 TTGCCTTCTGGTTCTTGTTTTT 57.183 36.364 0.00 0.00 35.27 1.94
66 67 4.758688 CTTTGCCTTCTGGTTCTTGTTTT 58.241 39.130 0.00 0.00 35.27 2.43
76 100 1.165907 TCGTGTGCTTTGCCTTCTGG 61.166 55.000 0.00 0.00 0.00 3.86
112 136 5.121811 GGGGTATGATGTAGCATGATGATC 58.878 45.833 0.00 0.00 0.00 2.92
124 148 8.260818 CAGAGATTATATTTCGGGGTATGATGT 58.739 37.037 0.00 0.00 0.00 3.06
135 159 7.171678 GGGGTTGTCTTCAGAGATTATATTTCG 59.828 40.741 0.00 0.00 33.70 3.46
141 165 4.779993 GGGGGTTGTCTTCAGAGATTAT 57.220 45.455 0.00 0.00 33.70 1.28
170 194 7.276438 CAGTTCTGATTTCGTGAATATGAGTCA 59.724 37.037 0.00 0.00 0.00 3.41
184 208 7.254932 GGTCTTATACATGGCAGTTCTGATTTC 60.255 40.741 3.84 0.00 0.00 2.17
199 223 6.377146 GGTTTGGTGAACATGGTCTTATACAT 59.623 38.462 12.94 0.00 40.13 2.29
204 229 3.139397 AGGGTTTGGTGAACATGGTCTTA 59.861 43.478 12.94 0.00 40.13 2.10
218 243 3.761897 TCCAGTGTTTGATAGGGTTTGG 58.238 45.455 0.00 0.00 0.00 3.28
228 253 3.627395 AGTGTCTGTTCCAGTGTTTGA 57.373 42.857 0.00 0.00 32.61 2.69
274 299 7.554835 TGTTCCTTTTTGTCTGTGTGTTACTAT 59.445 33.333 0.00 0.00 0.00 2.12
291 316 1.950909 TCCGCGTGATTTGTTCCTTTT 59.049 42.857 4.92 0.00 0.00 2.27
361 386 1.122019 AGGGTTCCGTCAAGCTCTGT 61.122 55.000 0.00 0.00 32.62 3.41
363 388 1.187087 CTAGGGTTCCGTCAAGCTCT 58.813 55.000 0.00 0.00 32.62 4.09
415 441 0.533531 GGGTTCCGTCAAACTCGGTT 60.534 55.000 4.36 0.00 46.86 4.44
416 442 1.070275 GGGTTCCGTCAAACTCGGT 59.930 57.895 4.36 0.00 46.86 4.69
422 448 2.435069 TGTTGTCTAGGGTTCCGTCAAA 59.565 45.455 0.00 0.00 0.00 2.69
438 464 3.645975 CGGCGTCGGCTTTGTTGT 61.646 61.111 17.35 0.00 39.81 3.32
439 465 3.342627 TCGGCGTCGGCTTTGTTG 61.343 61.111 17.35 0.00 39.81 3.33
440 466 3.343421 GTCGGCGTCGGCTTTGTT 61.343 61.111 6.84 0.00 38.10 2.83
462 488 3.838244 TTTGCAGGTGTCTAGTGTCTT 57.162 42.857 0.00 0.00 0.00 3.01
486 512 0.938637 CGCTGATCTGATCCGACTGC 60.939 60.000 14.71 9.89 0.00 4.40
490 534 1.538950 CTCATCGCTGATCTGATCCGA 59.461 52.381 17.22 17.22 0.00 4.55
492 536 1.672441 GCCTCATCGCTGATCTGATCC 60.672 57.143 14.71 0.00 0.00 3.36
550 605 2.149383 AAGACACAGCTGCCCCTCA 61.149 57.895 15.27 0.00 0.00 3.86
558 613 2.093973 CCTAATCCGACAAGACACAGCT 60.094 50.000 0.00 0.00 0.00 4.24
561 616 2.496070 CCTCCTAATCCGACAAGACACA 59.504 50.000 0.00 0.00 0.00 3.72
582 638 0.453390 CATTTGCTTCTTCCTCGGGC 59.547 55.000 0.00 0.00 0.00 6.13
602 658 0.705253 GATCCCCGATCCTCCCTCTA 59.295 60.000 0.00 0.00 33.37 2.43
627 683 3.186119 GTTCCTCTTCATCTGCTTCTCG 58.814 50.000 0.00 0.00 0.00 4.04
663 719 9.956720 CAGATAAGAAAGCTTTTCTTCTCAAAA 57.043 29.630 23.03 11.73 39.44 2.44
664 720 9.342308 TCAGATAAGAAAGCTTTTCTTCTCAAA 57.658 29.630 23.03 14.98 39.44 2.69
665 721 8.908786 TCAGATAAGAAAGCTTTTCTTCTCAA 57.091 30.769 23.03 15.18 39.44 3.02
666 722 8.908786 TTCAGATAAGAAAGCTTTTCTTCTCA 57.091 30.769 23.03 12.61 39.44 3.27
667 723 7.962373 GCTTCAGATAAGAAAGCTTTTCTTCTC 59.038 37.037 14.05 17.03 39.44 2.87
668 724 7.360776 CGCTTCAGATAAGAAAGCTTTTCTTCT 60.361 37.037 14.05 10.47 39.44 2.85
669 725 6.740453 CGCTTCAGATAAGAAAGCTTTTCTTC 59.260 38.462 14.05 8.44 39.44 2.87
670 726 6.428159 TCGCTTCAGATAAGAAAGCTTTTCTT 59.572 34.615 14.05 18.12 39.44 2.52
671 727 5.934625 TCGCTTCAGATAAGAAAGCTTTTCT 59.065 36.000 14.05 9.19 41.27 2.52
672 728 6.018542 GTCGCTTCAGATAAGAAAGCTTTTC 58.981 40.000 14.05 6.83 35.56 2.29
673 729 5.389935 CGTCGCTTCAGATAAGAAAGCTTTT 60.390 40.000 14.05 0.29 35.56 2.27
674 730 4.092091 CGTCGCTTCAGATAAGAAAGCTTT 59.908 41.667 12.53 12.53 35.56 3.51
675 731 3.614616 CGTCGCTTCAGATAAGAAAGCTT 59.385 43.478 0.00 0.00 38.15 3.74
676 732 3.119459 TCGTCGCTTCAGATAAGAAAGCT 60.119 43.478 4.98 0.00 0.00 3.74
677 733 3.179830 TCGTCGCTTCAGATAAGAAAGC 58.820 45.455 0.00 0.00 0.00 3.51
678 734 4.259056 CGTTCGTCGCTTCAGATAAGAAAG 60.259 45.833 0.00 0.00 0.00 2.62
679 735 3.606777 CGTTCGTCGCTTCAGATAAGAAA 59.393 43.478 0.00 0.00 0.00 2.52
680 736 3.120095 TCGTTCGTCGCTTCAGATAAGAA 60.120 43.478 0.00 0.00 39.67 2.52
681 737 2.417586 TCGTTCGTCGCTTCAGATAAGA 59.582 45.455 0.00 0.00 39.67 2.10
689 745 2.765922 GCGTCTCGTTCGTCGCTTC 61.766 63.158 17.39 0.00 44.28 3.86
690 746 2.799916 GCGTCTCGTTCGTCGCTT 60.800 61.111 17.39 0.00 44.28 4.68
700 756 2.775359 TTCCTCGTTCGTGCGTCTCG 62.775 60.000 1.99 0.00 0.00 4.04
705 761 1.801913 CTCCTTCCTCGTTCGTGCG 60.802 63.158 0.00 0.00 0.00 5.34
709 765 1.269998 ACTGTTCTCCTTCCTCGTTCG 59.730 52.381 0.00 0.00 0.00 3.95
713 769 3.386768 TTTCACTGTTCTCCTTCCTCG 57.613 47.619 0.00 0.00 0.00 4.63
737 793 1.102978 CCTGACTTTATTTGGGCCCG 58.897 55.000 19.37 2.61 0.00 6.13
739 795 1.273041 ACCCCTGACTTTATTTGGGCC 60.273 52.381 0.00 0.00 36.45 5.80
740 796 1.824852 CACCCCTGACTTTATTTGGGC 59.175 52.381 0.00 0.00 36.45 5.36
741 797 2.225267 ACCACCCCTGACTTTATTTGGG 60.225 50.000 0.00 0.00 39.02 4.12
742 798 2.825532 CACCACCCCTGACTTTATTTGG 59.174 50.000 0.00 0.00 0.00 3.28
744 800 3.117284 ACACACCACCCCTGACTTTATTT 60.117 43.478 0.00 0.00 0.00 1.40
745 801 2.445525 ACACACCACCCCTGACTTTATT 59.554 45.455 0.00 0.00 0.00 1.40
747 803 1.418637 GACACACCACCCCTGACTTTA 59.581 52.381 0.00 0.00 0.00 1.85
749 805 0.986019 TGACACACCACCCCTGACTT 60.986 55.000 0.00 0.00 0.00 3.01
750 806 0.768221 ATGACACACCACCCCTGACT 60.768 55.000 0.00 0.00 0.00 3.41
751 807 0.981183 TATGACACACCACCCCTGAC 59.019 55.000 0.00 0.00 0.00 3.51
752 808 0.981183 GTATGACACACCACCCCTGA 59.019 55.000 0.00 0.00 0.00 3.86
753 809 0.035439 GGTATGACACACCACCCCTG 60.035 60.000 0.00 0.00 36.01 4.45
754 810 0.178873 AGGTATGACACACCACCCCT 60.179 55.000 5.53 0.00 38.62 4.79
766 824 3.248024 ACCTCAAAGTGTCCAGGTATGA 58.752 45.455 0.00 0.00 37.50 2.15
768 826 4.684724 TCTACCTCAAAGTGTCCAGGTAT 58.315 43.478 0.00 0.00 40.10 2.73
774 832 2.673368 CGCATTCTACCTCAAAGTGTCC 59.327 50.000 0.00 0.00 0.00 4.02
785 843 6.619801 AAATCCTATTTGACGCATTCTACC 57.380 37.500 0.00 0.00 0.00 3.18
787 845 7.552687 ACAGAAAATCCTATTTGACGCATTCTA 59.447 33.333 0.00 0.00 0.00 2.10
795 853 6.148811 TCGAACCACAGAAAATCCTATTTGAC 59.851 38.462 0.00 0.00 0.00 3.18
801 859 5.011738 AGAGTTCGAACCACAGAAAATCCTA 59.988 40.000 24.22 0.00 0.00 2.94
803 861 4.065789 AGAGTTCGAACCACAGAAAATCC 58.934 43.478 24.22 0.00 0.00 3.01
811 869 2.894765 TGGTGATAGAGTTCGAACCACA 59.105 45.455 25.58 16.60 32.88 4.17
816 874 7.148639 CGAAGAAAAATGGTGATAGAGTTCGAA 60.149 37.037 0.00 0.00 35.17 3.71
833 891 0.040425 GCTTGCGAGCCGAAGAAAAA 60.040 50.000 15.66 0.00 43.29 1.94
885 2030 4.469227 ACACTCACAGGAGAAGAAGCATAT 59.531 41.667 0.00 0.00 44.26 1.78
895 2044 0.760567 ACAGCCACACTCACAGGAGA 60.761 55.000 0.00 0.00 44.26 3.71
931 2084 6.414732 TCTCTCTCTTCTCTTTCTCTACAGG 58.585 44.000 0.00 0.00 0.00 4.00
958 2112 3.596046 TCTTCCCCTCTCTCTCTTCTCTT 59.404 47.826 0.00 0.00 0.00 2.85
959 2113 3.197983 TCTTCCCCTCTCTCTCTTCTCT 58.802 50.000 0.00 0.00 0.00 3.10
960 2114 3.053619 ACTCTTCCCCTCTCTCTCTTCTC 60.054 52.174 0.00 0.00 0.00 2.87
961 2115 2.926329 ACTCTTCCCCTCTCTCTCTTCT 59.074 50.000 0.00 0.00 0.00 2.85
962 2116 3.382083 ACTCTTCCCCTCTCTCTCTTC 57.618 52.381 0.00 0.00 0.00 2.87
963 2117 3.594232 TGTACTCTTCCCCTCTCTCTCTT 59.406 47.826 0.00 0.00 0.00 2.85
964 2118 3.053917 GTGTACTCTTCCCCTCTCTCTCT 60.054 52.174 0.00 0.00 0.00 3.10
965 2119 3.284617 GTGTACTCTTCCCCTCTCTCTC 58.715 54.545 0.00 0.00 0.00 3.20
966 2120 2.356330 CGTGTACTCTTCCCCTCTCTCT 60.356 54.545 0.00 0.00 0.00 3.10
974 2128 2.183555 CCGCCGTGTACTCTTCCC 59.816 66.667 0.00 0.00 0.00 3.97
976 2130 2.879462 CGCCGCCGTGTACTCTTC 60.879 66.667 0.00 0.00 0.00 2.87
1137 2291 1.315690 CCTCGCCGACAAGGTAGATA 58.684 55.000 0.00 0.00 43.70 1.98
1310 2476 9.585369 CCAATAGATAGATCATAGATCTAGGCA 57.415 37.037 18.37 8.82 36.03 4.75
1593 2775 5.012561 AGCATCTCTATTCTAACCCATCCAC 59.987 44.000 0.00 0.00 0.00 4.02
1641 2823 2.105477 AGATCCAGGGCATGACATACAC 59.895 50.000 0.00 0.00 0.00 2.90
1642 2824 2.369860 GAGATCCAGGGCATGACATACA 59.630 50.000 0.00 0.00 0.00 2.29
1643 2825 2.611473 CGAGATCCAGGGCATGACATAC 60.611 54.545 0.00 0.00 0.00 2.39
1644 2826 1.620323 CGAGATCCAGGGCATGACATA 59.380 52.381 0.00 0.00 0.00 2.29
1645 2827 0.395686 CGAGATCCAGGGCATGACAT 59.604 55.000 0.00 0.00 0.00 3.06
1646 2828 0.687427 TCGAGATCCAGGGCATGACA 60.687 55.000 0.00 0.00 0.00 3.58
1647 2829 0.683973 ATCGAGATCCAGGGCATGAC 59.316 55.000 0.00 0.00 0.00 3.06
1648 2830 0.972134 GATCGAGATCCAGGGCATGA 59.028 55.000 0.00 0.00 31.76 3.07
1649 2831 0.975135 AGATCGAGATCCAGGGCATG 59.025 55.000 9.27 0.00 38.58 4.06
1650 2832 2.042297 TCTAGATCGAGATCCAGGGCAT 59.958 50.000 9.27 0.00 38.58 4.40
1651 2833 1.425448 TCTAGATCGAGATCCAGGGCA 59.575 52.381 9.27 0.00 38.58 5.36
1652 2834 2.208132 TCTAGATCGAGATCCAGGGC 57.792 55.000 9.27 0.00 38.58 5.19
1653 2835 5.477510 CAAATTCTAGATCGAGATCCAGGG 58.522 45.833 6.35 0.00 38.58 4.45
1654 2836 5.477510 CCAAATTCTAGATCGAGATCCAGG 58.522 45.833 6.35 3.91 38.58 4.45
1655 2837 5.011533 ACCCAAATTCTAGATCGAGATCCAG 59.988 44.000 6.35 5.91 38.58 3.86
1656 2838 4.901849 ACCCAAATTCTAGATCGAGATCCA 59.098 41.667 6.35 0.00 38.58 3.41
1657 2839 5.011125 TCACCCAAATTCTAGATCGAGATCC 59.989 44.000 6.35 0.00 38.58 3.36
1658 2840 6.090483 TCACCCAAATTCTAGATCGAGATC 57.910 41.667 6.35 5.00 38.09 2.75
1659 2841 5.011533 CCTCACCCAAATTCTAGATCGAGAT 59.988 44.000 6.35 0.00 0.00 2.75
1660 2842 4.342378 CCTCACCCAAATTCTAGATCGAGA 59.658 45.833 0.81 0.81 0.00 4.04
1661 2843 4.342378 TCCTCACCCAAATTCTAGATCGAG 59.658 45.833 0.00 0.00 0.00 4.04
1662 2844 4.286707 TCCTCACCCAAATTCTAGATCGA 58.713 43.478 0.00 0.00 0.00 3.59
1663 2845 4.502259 CCTCCTCACCCAAATTCTAGATCG 60.502 50.000 0.00 0.00 0.00 3.69
1664 2846 4.656112 TCCTCCTCACCCAAATTCTAGATC 59.344 45.833 0.00 0.00 0.00 2.75
1665 2847 4.635473 TCCTCCTCACCCAAATTCTAGAT 58.365 43.478 0.00 0.00 0.00 1.98
1666 2848 4.033709 CTCCTCCTCACCCAAATTCTAGA 58.966 47.826 0.00 0.00 0.00 2.43
1667 2849 4.033709 TCTCCTCCTCACCCAAATTCTAG 58.966 47.826 0.00 0.00 0.00 2.43
1668 2850 4.033709 CTCTCCTCCTCACCCAAATTCTA 58.966 47.826 0.00 0.00 0.00 2.10
1669 2851 2.843113 CTCTCCTCCTCACCCAAATTCT 59.157 50.000 0.00 0.00 0.00 2.40
1670 2852 2.840651 TCTCTCCTCCTCACCCAAATTC 59.159 50.000 0.00 0.00 0.00 2.17
1671 2853 2.921221 TCTCTCCTCCTCACCCAAATT 58.079 47.619 0.00 0.00 0.00 1.82
1672 2854 2.649742 TCTCTCCTCCTCACCCAAAT 57.350 50.000 0.00 0.00 0.00 2.32
1673 2855 2.260822 CTTCTCTCCTCCTCACCCAAA 58.739 52.381 0.00 0.00 0.00 3.28
1674 2856 1.944177 CTTCTCTCCTCCTCACCCAA 58.056 55.000 0.00 0.00 0.00 4.12
1675 2857 0.616111 GCTTCTCTCCTCCTCACCCA 60.616 60.000 0.00 0.00 0.00 4.51
1676 2858 0.616111 TGCTTCTCTCCTCCTCACCC 60.616 60.000 0.00 0.00 0.00 4.61
1677 2859 0.823460 CTGCTTCTCTCCTCCTCACC 59.177 60.000 0.00 0.00 0.00 4.02
1678 2860 1.750778 CTCTGCTTCTCTCCTCCTCAC 59.249 57.143 0.00 0.00 0.00 3.51
1679 2861 1.357420 ACTCTGCTTCTCTCCTCCTCA 59.643 52.381 0.00 0.00 0.00 3.86
1680 2862 2.143876 ACTCTGCTTCTCTCCTCCTC 57.856 55.000 0.00 0.00 0.00 3.71
1681 2863 2.091885 CCTACTCTGCTTCTCTCCTCCT 60.092 54.545 0.00 0.00 0.00 3.69
1682 2864 2.306847 CCTACTCTGCTTCTCTCCTCC 58.693 57.143 0.00 0.00 0.00 4.30
1683 2865 2.687935 CACCTACTCTGCTTCTCTCCTC 59.312 54.545 0.00 0.00 0.00 3.71
1684 2866 2.310349 TCACCTACTCTGCTTCTCTCCT 59.690 50.000 0.00 0.00 0.00 3.69
1685 2867 2.687935 CTCACCTACTCTGCTTCTCTCC 59.312 54.545 0.00 0.00 0.00 3.71
1686 2868 2.687935 CCTCACCTACTCTGCTTCTCTC 59.312 54.545 0.00 0.00 0.00 3.20
1687 2869 2.622977 CCCTCACCTACTCTGCTTCTCT 60.623 54.545 0.00 0.00 0.00 3.10
1688 2870 1.754226 CCCTCACCTACTCTGCTTCTC 59.246 57.143 0.00 0.00 0.00 2.87
1689 2871 1.359474 TCCCTCACCTACTCTGCTTCT 59.641 52.381 0.00 0.00 0.00 2.85
1690 2872 1.754226 CTCCCTCACCTACTCTGCTTC 59.246 57.143 0.00 0.00 0.00 3.86
1691 2873 1.359474 TCTCCCTCACCTACTCTGCTT 59.641 52.381 0.00 0.00 0.00 3.91
1692 2874 1.003646 TCTCCCTCACCTACTCTGCT 58.996 55.000 0.00 0.00 0.00 4.24
1693 2875 1.064314 TCTCTCCCTCACCTACTCTGC 60.064 57.143 0.00 0.00 0.00 4.26
1694 2876 2.241176 AGTCTCTCCCTCACCTACTCTG 59.759 54.545 0.00 0.00 0.00 3.35
1695 2877 2.568979 AGTCTCTCCCTCACCTACTCT 58.431 52.381 0.00 0.00 0.00 3.24
1696 2878 3.020984 CAAGTCTCTCCCTCACCTACTC 58.979 54.545 0.00 0.00 0.00 2.59
1697 2879 2.291930 CCAAGTCTCTCCCTCACCTACT 60.292 54.545 0.00 0.00 0.00 2.57
1698 2880 2.104170 CCAAGTCTCTCCCTCACCTAC 58.896 57.143 0.00 0.00 0.00 3.18
1699 2881 2.000803 TCCAAGTCTCTCCCTCACCTA 58.999 52.381 0.00 0.00 0.00 3.08
1700 2882 0.787084 TCCAAGTCTCTCCCTCACCT 59.213 55.000 0.00 0.00 0.00 4.00
1701 2883 1.190643 CTCCAAGTCTCTCCCTCACC 58.809 60.000 0.00 0.00 0.00 4.02
1702 2884 1.190643 CCTCCAAGTCTCTCCCTCAC 58.809 60.000 0.00 0.00 0.00 3.51
1703 2885 1.084866 TCCTCCAAGTCTCTCCCTCA 58.915 55.000 0.00 0.00 0.00 3.86
1704 2886 2.107366 CTTCCTCCAAGTCTCTCCCTC 58.893 57.143 0.00 0.00 0.00 4.30
1705 2887 1.273552 CCTTCCTCCAAGTCTCTCCCT 60.274 57.143 0.00 0.00 0.00 4.20
1706 2888 1.199615 CCTTCCTCCAAGTCTCTCCC 58.800 60.000 0.00 0.00 0.00 4.30
1707 2889 1.199615 CCCTTCCTCCAAGTCTCTCC 58.800 60.000 0.00 0.00 0.00 3.71
1708 2890 2.239681 TCCCTTCCTCCAAGTCTCTC 57.760 55.000 0.00 0.00 0.00 3.20
1709 2891 2.723530 TTCCCTTCCTCCAAGTCTCT 57.276 50.000 0.00 0.00 0.00 3.10
1710 2892 3.615155 CATTTCCCTTCCTCCAAGTCTC 58.385 50.000 0.00 0.00 0.00 3.36
1711 2893 2.310052 CCATTTCCCTTCCTCCAAGTCT 59.690 50.000 0.00 0.00 0.00 3.24
1712 2894 2.308866 TCCATTTCCCTTCCTCCAAGTC 59.691 50.000 0.00 0.00 0.00 3.01
1713 2895 2.358258 TCCATTTCCCTTCCTCCAAGT 58.642 47.619 0.00 0.00 0.00 3.16
1714 2896 3.456380 TTCCATTTCCCTTCCTCCAAG 57.544 47.619 0.00 0.00 0.00 3.61
1715 2897 4.095946 CAATTCCATTTCCCTTCCTCCAA 58.904 43.478 0.00 0.00 0.00 3.53
1716 2898 3.711863 CAATTCCATTTCCCTTCCTCCA 58.288 45.455 0.00 0.00 0.00 3.86
1717 2899 2.432146 GCAATTCCATTTCCCTTCCTCC 59.568 50.000 0.00 0.00 0.00 4.30
1718 2900 3.099141 TGCAATTCCATTTCCCTTCCTC 58.901 45.455 0.00 0.00 0.00 3.71
1719 2901 3.188880 TGCAATTCCATTTCCCTTCCT 57.811 42.857 0.00 0.00 0.00 3.36
1720 2902 4.492494 AATGCAATTCCATTTCCCTTCC 57.508 40.909 0.00 0.00 31.67 3.46
1733 2915 2.479049 GCAGCGAGTGATGAATGCAATT 60.479 45.455 0.00 0.00 40.93 2.32
1734 2916 1.065102 GCAGCGAGTGATGAATGCAAT 59.935 47.619 0.00 0.00 31.64 3.56
1735 2917 0.448990 GCAGCGAGTGATGAATGCAA 59.551 50.000 0.00 0.00 31.64 4.08
1736 2918 1.371337 GGCAGCGAGTGATGAATGCA 61.371 55.000 0.00 0.00 35.40 3.96
1737 2919 1.354506 GGCAGCGAGTGATGAATGC 59.645 57.895 0.00 0.00 31.64 3.56
1738 2920 0.807275 TCGGCAGCGAGTGATGAATG 60.807 55.000 0.00 0.00 31.64 2.67
1739 2921 0.105593 ATCGGCAGCGAGTGATGAAT 59.894 50.000 0.00 0.00 31.64 2.57
1740 2922 0.528466 GATCGGCAGCGAGTGATGAA 60.528 55.000 0.00 0.00 31.64 2.57
1741 2923 1.066422 GATCGGCAGCGAGTGATGA 59.934 57.895 0.00 0.00 31.64 2.92
1742 2924 1.067084 AGATCGGCAGCGAGTGATG 59.933 57.895 0.00 0.00 33.68 3.07
1743 2925 1.067084 CAGATCGGCAGCGAGTGAT 59.933 57.895 0.00 0.00 0.00 3.06
1744 2926 1.387295 ATCAGATCGGCAGCGAGTGA 61.387 55.000 0.00 0.00 0.00 3.41
1745 2927 0.938637 GATCAGATCGGCAGCGAGTG 60.939 60.000 0.00 0.00 0.00 3.51
1746 2928 1.361993 GATCAGATCGGCAGCGAGT 59.638 57.895 0.00 0.00 0.00 4.18
1747 2929 4.241715 GATCAGATCGGCAGCGAG 57.758 61.111 0.00 0.00 0.00 5.03
1755 2937 4.829858 TGTACGAGACACCGATCAGATCG 61.830 52.174 23.70 23.70 42.06 3.69
1756 2938 2.612672 TGTACGAGACACCGATCAGATC 59.387 50.000 0.00 0.00 31.20 2.75
1757 2939 2.640184 TGTACGAGACACCGATCAGAT 58.360 47.619 0.00 0.00 31.20 2.90
1758 2940 2.103537 TGTACGAGACACCGATCAGA 57.896 50.000 0.00 0.00 31.20 3.27
1759 2941 4.035324 ACTTATGTACGAGACACCGATCAG 59.965 45.833 0.00 0.00 42.17 2.90
1760 2942 3.943381 ACTTATGTACGAGACACCGATCA 59.057 43.478 0.00 0.00 42.17 2.92
1761 2943 4.548991 ACTTATGTACGAGACACCGATC 57.451 45.455 0.00 0.00 42.17 3.69
1762 2944 4.024218 GCTACTTATGTACGAGACACCGAT 60.024 45.833 0.00 0.00 42.17 4.18
1763 2945 3.310774 GCTACTTATGTACGAGACACCGA 59.689 47.826 0.00 0.00 42.17 4.69
1764 2946 3.311871 AGCTACTTATGTACGAGACACCG 59.688 47.826 0.00 0.00 42.17 4.94
1765 2947 4.497674 CCAGCTACTTATGTACGAGACACC 60.498 50.000 0.00 0.00 42.17 4.16
1766 2948 4.599047 CCAGCTACTTATGTACGAGACAC 58.401 47.826 0.00 0.00 42.17 3.67
1767 2949 3.066342 GCCAGCTACTTATGTACGAGACA 59.934 47.826 0.00 0.00 43.97 3.41
1768 2950 3.550436 GGCCAGCTACTTATGTACGAGAC 60.550 52.174 0.00 0.00 0.00 3.36
1769 2951 2.621998 GGCCAGCTACTTATGTACGAGA 59.378 50.000 0.00 0.00 0.00 4.04
1770 2952 2.288273 GGGCCAGCTACTTATGTACGAG 60.288 54.545 4.39 0.00 0.00 4.18
1771 2953 1.684983 GGGCCAGCTACTTATGTACGA 59.315 52.381 4.39 0.00 0.00 3.43
1772 2954 1.270147 GGGGCCAGCTACTTATGTACG 60.270 57.143 4.39 0.00 0.00 3.67
1773 2955 2.037381 GAGGGGCCAGCTACTTATGTAC 59.963 54.545 4.39 0.00 0.00 2.90
1774 2956 2.326428 GAGGGGCCAGCTACTTATGTA 58.674 52.381 4.39 0.00 0.00 2.29
1775 2957 1.132500 GAGGGGCCAGCTACTTATGT 58.868 55.000 4.39 0.00 0.00 2.29
1776 2958 1.131638 TGAGGGGCCAGCTACTTATG 58.868 55.000 4.39 0.00 0.00 1.90
1777 2959 1.701847 CATGAGGGGCCAGCTACTTAT 59.298 52.381 4.39 0.00 0.00 1.73
1778 2960 1.131638 CATGAGGGGCCAGCTACTTA 58.868 55.000 4.39 0.00 0.00 2.24
1779 2961 1.639635 CCATGAGGGGCCAGCTACTT 61.640 60.000 4.39 0.00 0.00 2.24
1780 2962 2.074948 CCATGAGGGGCCAGCTACT 61.075 63.158 4.39 0.00 0.00 2.57
1781 2963 2.512896 CCATGAGGGGCCAGCTAC 59.487 66.667 4.39 0.00 0.00 3.58
1797 2979 1.150764 GGCCATGTAAGGGTAGCCC 59.849 63.158 7.51 0.00 42.11 5.19
1798 2980 0.108774 GAGGCCATGTAAGGGTAGCC 59.891 60.000 5.01 1.60 42.11 3.93
1799 2981 0.108774 GGAGGCCATGTAAGGGTAGC 59.891 60.000 5.01 0.00 42.11 3.58
1800 2982 0.393077 CGGAGGCCATGTAAGGGTAG 59.607 60.000 5.01 0.00 42.11 3.18
1801 2983 1.052124 CCGGAGGCCATGTAAGGGTA 61.052 60.000 5.01 0.00 46.14 3.69
1802 2984 2.375345 CCGGAGGCCATGTAAGGGT 61.375 63.158 5.01 0.00 46.14 4.34
1803 2985 2.510906 CCGGAGGCCATGTAAGGG 59.489 66.667 5.01 0.00 46.14 3.95
1818 3000 4.302509 TGTACGTGTGTGGGGCCG 62.303 66.667 0.00 0.00 0.00 6.13
1819 3001 2.667199 GTGTACGTGTGTGGGGCC 60.667 66.667 0.00 0.00 0.00 5.80
1820 3002 2.109387 TGTGTACGTGTGTGGGGC 59.891 61.111 0.00 0.00 0.00 5.80
1821 3003 0.878523 CAGTGTGTACGTGTGTGGGG 60.879 60.000 0.00 0.00 0.00 4.96
1822 3004 0.878523 CCAGTGTGTACGTGTGTGGG 60.879 60.000 0.00 0.00 0.00 4.61
1823 3005 1.495584 GCCAGTGTGTACGTGTGTGG 61.496 60.000 0.00 0.00 0.00 4.17
1824 3006 1.495584 GGCCAGTGTGTACGTGTGTG 61.496 60.000 0.00 0.00 0.00 3.82
1825 3007 1.227438 GGCCAGTGTGTACGTGTGT 60.227 57.895 0.00 0.00 0.00 3.72
1826 3008 1.959226 GGGCCAGTGTGTACGTGTG 60.959 63.158 4.39 0.00 0.00 3.82
1827 3009 1.973816 TTGGGCCAGTGTGTACGTGT 61.974 55.000 6.23 0.00 0.00 4.49
1828 3010 0.816018 TTTGGGCCAGTGTGTACGTG 60.816 55.000 6.23 0.00 0.00 4.49
1829 3011 0.534203 CTTTGGGCCAGTGTGTACGT 60.534 55.000 6.23 0.00 0.00 3.57
1830 3012 1.234615 CCTTTGGGCCAGTGTGTACG 61.235 60.000 6.23 0.00 0.00 3.67
1831 3013 0.893727 CCCTTTGGGCCAGTGTGTAC 60.894 60.000 6.23 0.00 35.35 2.90
1832 3014 1.458486 CCCTTTGGGCCAGTGTGTA 59.542 57.895 6.23 0.00 35.35 2.90
1833 3015 2.198426 CCCTTTGGGCCAGTGTGT 59.802 61.111 6.23 0.00 35.35 3.72
1843 3025 1.362355 GTGTGTTTCGGCCCTTTGG 59.638 57.895 0.00 0.00 0.00 3.28
1844 3026 0.248866 GTGTGTGTTTCGGCCCTTTG 60.249 55.000 0.00 0.00 0.00 2.77
1845 3027 1.720694 CGTGTGTGTTTCGGCCCTTT 61.721 55.000 0.00 0.00 0.00 3.11
1846 3028 2.184167 CGTGTGTGTTTCGGCCCTT 61.184 57.895 0.00 0.00 0.00 3.95
1847 3029 2.590575 CGTGTGTGTTTCGGCCCT 60.591 61.111 0.00 0.00 0.00 5.19
1848 3030 2.589442 TCGTGTGTGTTTCGGCCC 60.589 61.111 0.00 0.00 0.00 5.80
1849 3031 2.629763 GTCGTGTGTGTTTCGGCC 59.370 61.111 0.00 0.00 0.00 6.13
1850 3032 2.027628 AACGTCGTGTGTGTTTCGGC 62.028 55.000 0.00 0.00 0.00 5.54
1851 3033 0.314738 CAACGTCGTGTGTGTTTCGG 60.315 55.000 0.00 0.00 0.00 4.30
1852 3034 0.917648 GCAACGTCGTGTGTGTTTCG 60.918 55.000 0.00 0.00 0.00 3.46
1853 3035 0.095589 TGCAACGTCGTGTGTGTTTC 59.904 50.000 0.00 0.00 0.00 2.78
1854 3036 0.096281 CTGCAACGTCGTGTGTGTTT 59.904 50.000 0.00 0.00 0.00 2.83
1855 3037 1.017177 ACTGCAACGTCGTGTGTGTT 61.017 50.000 0.00 0.00 0.00 3.32
1856 3038 1.017177 AACTGCAACGTCGTGTGTGT 61.017 50.000 0.00 1.54 0.00 3.72
1857 3039 0.315059 GAACTGCAACGTCGTGTGTG 60.315 55.000 0.00 0.00 0.00 3.82
1858 3040 0.738063 TGAACTGCAACGTCGTGTGT 60.738 50.000 0.00 0.00 0.00 3.72
1859 3041 0.043053 CTGAACTGCAACGTCGTGTG 60.043 55.000 0.00 0.85 0.00 3.82
1860 3042 0.459585 ACTGAACTGCAACGTCGTGT 60.460 50.000 0.00 0.00 0.00 4.49
1861 3043 0.650512 AACTGAACTGCAACGTCGTG 59.349 50.000 0.00 0.00 0.00 4.35
1862 3044 2.212869 TAACTGAACTGCAACGTCGT 57.787 45.000 0.00 0.00 0.00 4.34
1863 3045 2.987149 AGATAACTGAACTGCAACGTCG 59.013 45.455 0.00 0.00 0.00 5.12
1864 3046 4.313522 CAGATAACTGAACTGCAACGTC 57.686 45.455 0.00 0.00 46.03 4.34
1876 3058 6.815641 AGTGCAGTTCAGTATTCAGATAACTG 59.184 38.462 8.30 8.30 44.09 3.16
1877 3059 6.940739 AGTGCAGTTCAGTATTCAGATAACT 58.059 36.000 0.00 0.00 0.00 2.24
1878 3060 7.118390 ACAAGTGCAGTTCAGTATTCAGATAAC 59.882 37.037 3.08 0.00 0.00 1.89
1879 3061 7.161404 ACAAGTGCAGTTCAGTATTCAGATAA 58.839 34.615 3.08 0.00 0.00 1.75
1880 3062 6.701340 ACAAGTGCAGTTCAGTATTCAGATA 58.299 36.000 3.08 0.00 0.00 1.98
1881 3063 5.555017 ACAAGTGCAGTTCAGTATTCAGAT 58.445 37.500 3.08 0.00 0.00 2.90
1882 3064 4.960938 ACAAGTGCAGTTCAGTATTCAGA 58.039 39.130 3.08 0.00 0.00 3.27
1883 3065 5.679734 AACAAGTGCAGTTCAGTATTCAG 57.320 39.130 3.08 0.00 0.00 3.02
1884 3066 5.673337 GAACAAGTGCAGTTCAGTATTCA 57.327 39.130 3.08 0.00 43.64 2.57
1897 3079 4.049393 AGCGGACTGAACAAGTGC 57.951 55.556 0.00 0.00 43.49 4.40
1907 3089 1.607801 TACAGCATCAGCAGCGGACT 61.608 55.000 0.00 0.00 45.49 3.85
1908 3090 0.531532 ATACAGCATCAGCAGCGGAC 60.532 55.000 0.00 0.00 45.49 4.79
1909 3091 0.249615 GATACAGCATCAGCAGCGGA 60.250 55.000 0.00 0.00 45.49 5.54
1910 3092 0.531311 TGATACAGCATCAGCAGCGG 60.531 55.000 0.00 0.00 45.49 5.52
1911 3093 2.981997 TGATACAGCATCAGCAGCG 58.018 52.632 0.00 0.00 45.49 5.18
1922 3104 2.670479 CGCCTACTGATGCTGATACAG 58.330 52.381 0.00 0.00 37.62 2.74
1923 3105 1.269778 GCGCCTACTGATGCTGATACA 60.270 52.381 0.00 0.00 0.00 2.29
1924 3106 1.423395 GCGCCTACTGATGCTGATAC 58.577 55.000 0.00 0.00 0.00 2.24
1925 3107 0.039165 CGCGCCTACTGATGCTGATA 60.039 55.000 0.00 0.00 0.00 2.15
1926 3108 1.300465 CGCGCCTACTGATGCTGAT 60.300 57.895 0.00 0.00 0.00 2.90
1927 3109 2.104928 CGCGCCTACTGATGCTGA 59.895 61.111 0.00 0.00 0.00 4.26
1928 3110 2.104928 TCGCGCCTACTGATGCTG 59.895 61.111 0.00 0.00 0.00 4.41
1929 3111 2.105128 GTCGCGCCTACTGATGCT 59.895 61.111 0.00 0.00 0.00 3.79
1930 3112 2.202743 TGTCGCGCCTACTGATGC 60.203 61.111 0.00 0.00 0.00 3.91
1931 3113 1.139734 ACTGTCGCGCCTACTGATG 59.860 57.895 17.57 3.51 0.00 3.07
1932 3114 1.139734 CACTGTCGCGCCTACTGAT 59.860 57.895 17.57 3.69 0.00 2.90
1933 3115 0.956902 TACACTGTCGCGCCTACTGA 60.957 55.000 17.57 0.00 0.00 3.41
1934 3116 0.523546 CTACACTGTCGCGCCTACTG 60.524 60.000 0.00 7.36 0.00 2.74
1935 3117 1.801332 CTACACTGTCGCGCCTACT 59.199 57.895 0.00 0.00 0.00 2.57
1936 3118 1.872679 GCTACACTGTCGCGCCTAC 60.873 63.158 0.00 0.21 0.00 3.18
1937 3119 1.868987 TTGCTACACTGTCGCGCCTA 61.869 55.000 0.00 0.00 0.00 3.93
1938 3120 2.507110 ATTGCTACACTGTCGCGCCT 62.507 55.000 0.00 0.00 0.00 5.52
1939 3121 0.804544 TATTGCTACACTGTCGCGCC 60.805 55.000 0.00 0.00 0.00 6.53
1940 3122 0.297820 GTATTGCTACACTGTCGCGC 59.702 55.000 0.00 0.00 0.00 6.86
1941 3123 0.921347 GGTATTGCTACACTGTCGCG 59.079 55.000 0.00 0.00 0.00 5.87
1942 3124 1.287425 GGGTATTGCTACACTGTCGC 58.713 55.000 0.00 0.00 0.00 5.19
1943 3125 2.665649 TGGGTATTGCTACACTGTCG 57.334 50.000 0.00 0.00 32.11 4.35
1944 3126 2.678336 GCTTGGGTATTGCTACACTGTC 59.322 50.000 0.00 0.00 32.11 3.51
1945 3127 2.618045 GGCTTGGGTATTGCTACACTGT 60.618 50.000 0.00 0.00 32.11 3.55
1946 3128 2.017049 GGCTTGGGTATTGCTACACTG 58.983 52.381 0.00 0.00 32.11 3.66
1947 3129 1.064685 GGGCTTGGGTATTGCTACACT 60.065 52.381 0.00 0.00 32.11 3.55
2018 3200 2.484264 AGGAAGAACCAAAAGAATCGCG 59.516 45.455 0.00 0.00 42.04 5.87
2137 3319 0.813610 TGCAGAAGTGGTGTTGTCGG 60.814 55.000 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.