>input_sequence_86953
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-------------------------------------------------------------------------ATGGCGA
CGGGCGGGAAGGGGCTGAACGCGACGGGCGAGTTTTTCCGGCGCCGTGACGAGTGGAGGAGGCACCCCATGGTGGGGAAC
CAGCTGCGCCACGCCACTCCGGGGCTAGGCATCGCCATCGTCGCCTTTGGTATCTACCTTGTCGGCGAGGCCGCCTACAA
CCGCCTCTACCGCCGCGCCG------GCGACAACCACCACTAG-------------------------------------
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>chr6B_1_TraesCS6B01G221500
ATAAAAAACATGTAAAACAAGCGATAAGAACTTCTCCACCGAGATACACAACCCCCATATCATAAAA-------------
----------AAACAAGAACCAGAAGGCAAAGCACACGAACACACAACACCCTATGATCATCATGCTACATCATACCCCG
AAATATAATCTCTGAAGACAACCCCCCTAGTCTTGACTCATATTCACGAAATCAGAACTGCCAT-GTATAAGACCATGTT
CACCAAACCCTATCAAACACTGGAACAGACACTAACGCAACTAAATAGCCTCGATCTCATAGTAACACACAGACAAAAAG
GAACAAATCACGCGGAATTGGGGCCGTTACATTCAAGATGATGAACTTGACGAACCCTAGATGACACA-GAGCTTGACGG
AACCCTAGAAGACGCAGGCCTTGACGGGAGCCCTAGACGCAACCGAGTTTGACGGAACCCTAGACAACAAAGCCGACGCC
GACGACGAAGACACTAGACACCTGCAAATAAG------------------CAGTCGGATCAGATCAGCGATGAGGCGGAC
AAATCAGG-----------GGGAGAGAGGACCGTCGACTGCTTATGAGGGGCAGCTGTGTCTTGTCGGATTAGGAG-GCC
CGAGGAAGAAGCAAATGTAGAGGGAGGATCGGGGATCCGACACGAGAAGCAGATGAAGAGGAACGAAAGCTTTTTCTTTT
TTGAGAAGAAAAGCTTTCTTATCTGAAGCGACGAACGAGACGCACGAACGAGGAAGGAGAACAGTGAAAAAACGGGCCCA
AATAAAGTCA--GGGGTGGTGTGTCATACCTGGACACTTTGAGGTAGAATGCGTCAAATAGGATTTTCTGTGGTTCGAAC
TCTATCACCAT---------------------------------------------------------------------
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----------------------------------------------------------TTTTCTTCGGCTCGCAAGCCCA
GGCCGCAACGGGTTGGGCCCTGTATATTAATAT----GCTTCTTCTCC-TGTGAGTGTGGCTGTCCTA---TCCTCCTCG
CCACCTGTAGAG-AAAGAGAAGAGAGAGAGAAAGAGAAGAGAGAGAGGGGAAGAGTACACGGCGGCGGAGGCGATGGCGA
CGGGCGGGAAGGGGCTGAACGCGACGGGCGAGTTTTTCCGGCGCCGTGACGAGTGGAGGAGGCACCCCATGGTGGGGAAC
CAGCTGCGCCACGCCACTCCGGGGCTAGGCATCGCCATCGTCGCCTTTGGTATCTACCTTGTCGGCGAGGCCGCCTACAA
CCGCCTCTACCGCCGCGCCG------GCGACAACCACCACTAGATCTCCCCCAGAGGTAAACGCCCCGTGTGATCTTCAC
-TTTCTTTCCAGTCTAACCTAATGGGTGAATTTGGGATGATTTCAAGGGGTAAGGGCTTTTGC-----GGTGTTTTGCCT
AGATCTATGATCTATCTATTGGGGACTGTGTAGTACTGTCTTCTGTCGAACGGATTATCG-ATTTACACGTTGGAAATTT
ACTGCAGCTCTGATTCGT-CAAGTTGTTTGAGAT-CTTACGTGCTTGTGGCATAATTGATG------TTTGCAAAAGAGT
GGACCGAAATGCATCACCTGCACGCATAATGATTCATAAATCGA------TTAGTTTTTGCCCTGCATATGGTGATTCTG
ATCACCAGTC-GAGTTGCATGTATGGCAACCGCACATGAATATCCATTTCATGGGTGGATGGGTTAGAATAGAGATGCTG
TAAATCTCAAGGCGCTCTTTCCGTGTATGTCATGCCCTGGATCTCGATCTAGAATTTGGGTGAGGAGGAGAGAAGCAGAG
TAGGTGAGGGAGAGACTTGGAGGAAGGGAAATGGAATTGCATTCATCACTCGCTGCCGATCTGATCGGTGTCTCGTACAT
AAGTAGCTGGCCCCTCATGGGCTACCCTTACATGGCCTCCGGCCCCACACACGTACACACTGGCCCAAAGGGCCGAAACA
CACACGACGTTGCAGTTCAGTTATCTGAATACTGAACTGCACTTGTTCAGTCCGCTGCTGATGCTGTATCAGCATCAGTA
GGCGCGACAGTGTAGCAATACCCAAGCCCACCAGTAGAGCAGAAATTGGCAAGCATAATAGATCACTCAGACAGGGGAGC
GCGATTCTTTTGGTTCTTCCTGATGACACAGAAACAATTGCCAGGCCGGCAACAAAGTAATCATCTCTTTTCGGCAATGT
ATGCTTGACCTTGAACAGATGCTGATTAAATTGTAGACCCGACAACACCACTTCTGCAATTGCACAGCCAAAGAAATATG
TTCTGTTGAGCTCTGGAACAAACAA
>chr6A_3
AAAAGA-ACATGTAAAACAAGCGATAAGAACTTCTCCATTGAGATACACAACCCCCATATCATCATCAACAAAAATAG--
----------AAACAAGAATCAGAAAGCAAAGCACACGAACACACAACACCAT---ATCATCATGCCGCATCATACCCTG
AAATCTAATCTCTGAAGACAA-CCCCCTAGTCTAGACTCAGATTCACCAAATCAGAACTGCCCT-GTACAAGACCATGTT
CATCAAACCCTAGCAAACACAAGAACAGACACTAACGCAA-TAAATAGCCTCGATCTTGTAGTAACACACAGACAGAAAG
GAACAAATCGCGCAGAATTGGGGCCATTACATTCAAGATGATGAACTTGACGAACCCTAGATGACGCG-GAGCTTGAAGG
AACCCTAAAAGACGCAGGCCTTGACGGGAGCCCTAGACGCCGCCGAGCTTGATGGAACCC-AG---ACAAAGCCGACACC
GACGATGGAGACACTAAACACCTGCAAATAAACATCCATTGCGACGACGTCAGCCAGATCAGATTAGCGATGAGGCGGAC
AAATCAGG-----------GGGAGAGAGAACTGTTGACTGCTTACGAGGGGCGGCAGTGTCCTGCCGGATTAGGAG-CCC
CGAGGAAGAAGCAAATGAAGAGGGAGGATCGGGCATCCGACAGGAGAAGCAGATGAATACGAACGAAAGCTT--------
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>chr6D_3
AAAAGA-ACATGTAAAACAAGCGATAAGAACTTCTCCATCGAGATACACAACCCCCGTATCATCATCAACAAAAAACAGA
AACAAGAATCAAACAAGAATCAGAAGGCAAAGCACACGAACACACAACACCCTATCATCATCATGCCGCATCACACCCTG
AAATCTAATCTCCGAAGAC-ACCCCCCTAGTCTAGACTCAGATTCACCAAATCAGAACTGC--------------GCGTT
CATCAAATCCTAGCTAACACTTGAACAGACACTAACGCAACTAAATAGCCTCGATCTCGCAGTAACACACAGACAGAAAG
GAACAAATCGCGCGGAATTGGGGCCGTTACATTCAAGACGATGAACTTGACGAACCCTAAATGACGCG-GAGCTTGACGG
TACCCTAAAAGACGCAGGCCTTGACGGGAGCCCTAGACGCCGCTGAGCTTGACGGAACCCTAG---ACAAAGCCGACGCC
GACGACGGAGACACTAGACACGTGCAAATAAACATCCATCACGA-GACGTCAGCCAGATCAGATCAGTGATGAGGCAGAC
AAATCGGG-----------GGGAGAGAGGACTGTCGACTGCTTACAAGGGGCGGCGGTGTCTTGCCGGATTAGGAG-CCC
CGAGGAAGAAGCAAATGAAGAGGGAGGATCGGGGATCCGACAGGAGAAGCAGATGAAGAGGAACGAAAGCTTC-------
-----------------CTTATCTAGAGCGACGAAAGAGATGCATGAATGAGAAAGGAGAACAGTGAAAAAAGGCCGACC
CAAATGAAATTTGGGGTGGTGTGCCGTACCTTGACACTTTGACGCAGAATGCCTCAAAAATGATTTTCCGTGGCTCGAAC
TCTATCACCAACTAGAAGAACGCCCGTGTGTTGCAACGGTGCCACATTAACTTTAAGAGTTCAATATTAATATTCTCATA
CATATCAAGTGACAGTGGCGACCTTTTTTTACCATGAAATCCTCACACACACACACTCTCCCTCCCTCTTCCTCACTCTC
TCTCCCCCTCTCCCTCTCTCTCTATCACACACACATATCCATCTTATTGGGTACGAGACCATAATCCATCTATTTTACAC
ACACGCACGCTAGTGCATAACAATATGGATCATGTGTATTATATTTGCCACCACAACTGAGGGAATTAATTTCATATAAA
TCGGCCAGCCACAGCTCCAAGAATGCGCGGAGGAGGTGGCCCGGGTCGGCGTCGGCGCCGTCCGGCGCGGGCCACGGGCC
CGCTTCCAAGTGCGTTTGCGCGCCGGCCACCCACGCCGGGTCCTTCAAGTGTCGCTTCCACCGCACCAACTCCTAGGGCC
ACGGCCACGGCCAGGGCCAAGGAAGCCGCCCTTCTTCGCCCCCTTCACCGGCCGCGGCCAACGTTGTGCCGCGGCACCCG
GCCTCGCCGTCCTCGTCCTCCGGCACCGTTGCGACCCAGTGACGCAGCCCAAGCATCGGCCTCGAGAATCAAGAACGCTC
GACAACGGAGAGGGAAGGAAAGATCATATACATGTCATAAGAAAGGGAGTTTGTTTACTGCTCCTCGATGTATTGTTTCC
TTTGTGGAGATTGATTACCATCCGTGAGTTAAGGTAAGGTTAATGTGATTGAGCGATTTTTCTGAAAATCAATTATTTGT
TTTCTAAGTAATGTGATTGAGTGATTTAAGGTAAGGTTAATTAATTTAGATTTGATTTTCAGAGATTGTTCGTGATTGAT
TTTACATTACTAAATAACTTGCGCTAGTATGGAAAGTTCTGATCTGTTCAGATTTCTTTCGTTCTGTGAGAGGGTGACGC
GAAAATAAACCGATGAAGTGGGAGAGGGGATAAAAAAATCTACGAAAAAAATCAGCAAAGGTGGGAGAAGGTAAAAAAAC
CATGAAAAATGGAACGGAAAAAAACTGGAAACGAGACTACCTACTGCTCAAGCAGAGATTTTCTTCGGCTCGCAAGCCCA
GGTCGCAACGGGTTGGGCCATGTATATTACTATTTGGGCTTCTGCTCC-TGTGAGTGTGGCTGTCCTATCCTCCTCCTCG
CCAACTGTAGAG-AAAGAGAAGAGAGAGAGA---------GA--------AAGAGTACACGGCGGCGGAGGCGATGGCGA
AGGGCGGGAAGGGGCTGAACGCGACGGGCGAGTTTTTCCGGCGCCGTGACGAGTGGAGGAGGCACCCTATGGTGGGGAAC
CAGCTGCGCCACGCCACTCCGGGGCTAGGCATCGCCATCGTCGCCTTTGGGATCTACCTTGTCGGCGAGGCCGCCTACAA
CCGCCTCTACCGCCCCGCCG------GCGACAACCACCACTAGATCTCCCCCAGAGGTAAACGCCCCGTGTGATCTTCAC
TTTTCTTTCCAGTCTAACCTAATGGGTGAATTTGGGATGGTTTCAAGGGGTAAGGGCTTTTGC-----GGTGTTTCGCCT
AGATCTATGATCTATCTATTGGGGACTGTGTAGTACTGTCTTCTGTCGAACGGATTATCG-ATTTACACGTTGGAAATTT
ACTGCAGCTCTGATTCGT-CAAGTTGTTTGAGATTCTTACGTGCTTGTGGCATAATTGATG------TTTGCAAAAGAGT
GGACCGAAATGCATCACCTGCACGCATAATGATTCGTAAATCGA------TTAGTTTTTGCCCTGCATATGGTGATTCTG
ATCACCAGTC-GAGTTGCATGTATGGCAACCGCACATGAATATCCATTTCATGGATGGATGGGTTAGAATAGAGATGCTG
TAAATCTCAAGGCGCTCTTTCC----------------------------------------------------------
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---------GTGTAGCAATACCCAAGCCCACCAGTAGAGCAGAAATTGGCAAGCATAATAGATCACTCAGACAGGGGAGT
GTGATTCTTTTGGTTCTTCCTGATGACACAGAAACAATTGCCAGGCCGGCAACAAAGTAATCATCTCTTTTCAGCAATGT
ATGCTTGACCTTGAACAGATGCTGATTAAATTGTAGACTCGACAACACCGCTTTTGCAATTGCACAGCCAAAGAAATATG
TTCTGTTGAGCTCTGGAACTAACAA
>chr7B_100
CACTACAAG-----------------------------------------------------------------------
---------------------------------------------------CTATCATCATCATGCTGAATCAAACCCGA
AAATCCAATCTCTAAAGCAACT--CCCTAGTCCACACTTATATTCACCAAATCAAAATTGCCCTTGTAAAAGACCGCGCT
CGTGAAACCCTAG-AAACACTGGGGAAGATACTAATGCAACTAAATACACTCGATCTCGCGGTACCAAACAGAGAG-AAG
GAACACACCGCGGGGAATTGGTGCCATTACATTCAAGATGATGAACTTGACGAAGCCGAATTCGACATCGAGATTTATGA
AACCCTAGAAGACGTAGGCCTTCACGGGAT-CCTAGACGTCGCAGACCTTGAAGGAACCCTGG---AA------------
GCCAAGGGAGACACTGGCCAACTACAAAAAATCATCCATTCAGACGATGTCAGCCAGATCGGATCAGCAATGCGGCGGAT
GAATCGGGAGTGGGGGAGTGGGGGAGAGGACCGTCTACTACTCACGAGGGGTGGTGGAGTCTTCCTGGAGTAGGATCCCC
GGAGGAAGAAGTAGATGAAGAACGAGGAAGGGGGATACGACAGGAGAAGCATATGAAGAGGAACGA--------------
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>chr6A_810
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------------------------------------------------------------------TCCGTGGCTCGAAC
TCTATCGCCAA---------------------------------------------------------------------
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----------------------------------------------------------TTTTCTTCGGCTCGCAAGCCCA
GGTCGCAACGGGTTGGGCCCTGTATATTACTATTTGGGCTTCTGCTC--TGTGAGTGTGGCTGTCCTATCCTCCTCCTCG
CCAACTGTAGAG-AAAGAGAAGAGAGAGAGA---------GAGAGAGAGAAAGAGTACACAGCGGCGGAGGCGATGGCGA
AGGGCGGGAAGGGGTTGAACGCGACGGGCGAGTTTTTCCGGCGCCGTGACGAGTGGAGGAGGCACCCTATGGTGGGGAAC
CAGCTGCGCCACGCCACTCCGGGGCTAGGCATCGCCATCGTCGCCTTTGGGATCTACCTTGTCGGCGAGGCCGCCTACAA
CCGCCTCTACCGCCCCGCCG------GAGACAACCACCACTAGATCTCCCCCAGAGGTAAACGCCCCGTGTGACCTTCAC
TTTTCTTTCCAGTCTAACCTAATGGGTGAATTTGGGATGATTTCAAGGGGTAAGGGCTTTTGC-----GGTGTTTCGCCT
AGATCTATGATCTATCTATTGGGGACTGTGTAGTACTGTCTTCTGTCGAACGGATTATCG-ATTTACACGTTGGAAATTT
ACTGCAGCCCTGATTCGT-CAAGTTGTTTGAGATTCTTACGTGCTTGTGGCATAATAGATG------TTTGCAAAAGAGT
GGACCGAAATGCATCACCTGCACGCATAATGATTCGTAAATTGA------TTAGTTTTTGCCCTGCATATGGTGATTCTG
ATCACCAGTC-GAGCTGCATGTATGGCAACCGCACATGAATATCCATTTCATGGATGGATGGGTTAGAATAGAGATGCTG
TAAATCTCAAGGCGC----TCC----------------------------------------------------------
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---------GTATAGCAACACCCAAGCCCACCAGTAGAGCAGAAATTGCCAAGCATAATAGATCACTCAGACAGGGCAGT
GCGATTCTTTTGGTTCTTCTTGATGACACAGAAACAATTGCCAGTCCGGCAACAAAGTAATCATTTCTTTTCGGCAATGT
ATGCTTGACCTTGAACAGATGCTGATTAAATTGTAGACTCGACAACACCGCTTTTGCAATTGCACAGCCAAAGAAATATG
TTCTGTTGAGCTCTGGAACTAACAA
>chr6B_836
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-----------------------------------------------------------TTCCTTGGGTTTGCAAGCCCA
GGCGG-AACGGGTTGGGCCCTGCTTACTACTATTTCGGCTTCTGCTCTGTGTGAGTGTGGGTCGGGTA---TCCTCCTCG
CCAACTGCAGAGGAAAGAGGAGAGACGGAGA---------GA--------CGGAGTACGCGGCGGCGAAGACGATGGCGA
CGGGAGGGAAGGGGCTGAACGCGACGGGCGAGTTTTTCCGGCGCCGTGACGGATGGAGGAAGCACCCTATGGTGGGGAAC
CAGCTGCGCCACGCCACTCCGGGGCTCGGCATCGCCATCGTCGCCTTTGGGATCTACCTCGTCGGGGAGGCCGCCTACAA
CCGCCTCTACCACCCCGCCGTGACCGGCGACAACCGCCACTAGATCGCCCCCAGAGGTAACCGGCCCGTGTGGTCTTCAC
TTTTTTCCGAGTCAAACAATAATGTGTGAATTTGGGTTGATTTCAATCAGGCTGTAAGGGTTGCTGGGGGCGTTTCGCCT
AGATCTGTCCATTGGGGACT---GACTGTGTGGTACTGTCTTCTTTGGAACGGATTATGGAATTTACATGTTGGAAATAA
ACTGCAGCTCTGATTCGACCAAGTTGTTTGTGATTATTATGTGCTTGTGGCATAGTTGATGTTATAATTTGCAAAAGAAT
GGACCGAAATGCATCGCCTGCACGCATAACGATTCATTAATTGATTATAGTTAGTTTCTGCCCAGCATATGGTGATTCTG
ATCACCAGTCTGAGTTGCATGTATGGCAACCGCACATCAATA--------------------------------------
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>SNPs
-S------------------------------------S------------------------S-SS-------------
-------------------S-----------------------------------S-----------S----------S-
----S----------------------------S-------------S--------------S-----S-----------
--S---------S---------------------------------------------S----------------S----
---------S-------------------------------------------------------S-S------------
----------------------------------------SS-----S---------------SSS--------------
-------S-----------------------S---------------------S-S------------------------
--------------------------------------------S-------S--S--------S------------S--
-----------------S------------------------S-----------------------------SSSSSSSS
SSSSSSSSSSSSSSSSS-------SS---------S----S---S---S---S-------------------S-SSSS-S
S-S-SSSSSS-------------S-S-----S----------S-S-------S-----S-S-------S----S------
----------S---------------------------------------------------------------------
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-----------------------------S-------------S------------------------------------
---S---------------------------SSSSSSSSS-------S-S------------------------------
-------------------------------------------------------------------S------------
--------------------------------------------------S-----------------------------
--------------S-----------------------------------------------------------------
---------------------------------------------------------------------------S----
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------------------------------------------------------S-------------------------
----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS----------------------------------------------------------------------S
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--------------------------------------S----------S---S--------------------------
-------------------S-----
>forward_832
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------------GGGGTGGTGTGTCATACCTG------------------------------------------------
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>reverse_3107
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------------------------------------------------------------------TATCAGCATCAGTA
GGCGCG--------------------------------------------------------------------------
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