Multiple sequence alignment - TraesCS6B01G211500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G211500 chr6B 100.000 2646 0 0 1 2646 279197816 279200461 0.000000e+00 4887.0
1 TraesCS6B01G211500 chr6B 83.727 381 32 18 224 576 129309540 129309918 1.520000e-87 333.0
2 TraesCS6B01G211500 chr6B 85.294 306 19 11 574 866 129394574 129394866 2.580000e-75 292.0
3 TraesCS6B01G211500 chr6B 92.969 128 7 2 18 144 483602106 483601980 4.500000e-43 185.0
4 TraesCS6B01G211500 chr6B 95.238 42 2 0 1785 1826 44030904 44030863 1.700000e-07 67.6
5 TraesCS6B01G211500 chr6B 92.857 42 3 0 1789 1830 11142029 11142070 7.910000e-06 62.1
6 TraesCS6B01G211500 chr6A 92.385 801 42 6 998 1789 212357621 212356831 0.000000e+00 1123.0
7 TraesCS6B01G211500 chr6A 87.568 370 42 4 1920 2286 294614995 294614627 2.430000e-115 425.0
8 TraesCS6B01G211500 chr6A 89.820 167 12 3 1079 1240 212583188 212583022 2.670000e-50 209.0
9 TraesCS6B01G211500 chr6A 93.478 46 2 1 1785 1830 291335119 291335075 1.700000e-07 67.6
10 TraesCS6B01G211500 chr6D 89.460 797 66 6 998 1785 156730760 156731547 0.000000e+00 990.0
11 TraesCS6B01G211500 chr6D 89.466 731 59 11 1920 2646 291609505 291608789 0.000000e+00 907.0
12 TraesCS6B01G211500 chr6D 87.228 368 44 2 1922 2286 211774102 211774469 1.470000e-112 416.0
13 TraesCS6B01G211500 chr7D 90.204 735 55 10 1916 2646 613846537 613845816 0.000000e+00 942.0
14 TraesCS6B01G211500 chr5D 89.488 742 53 12 1916 2646 419466231 419465504 0.000000e+00 915.0
15 TraesCS6B01G211500 chr2A 89.237 734 63 9 1916 2646 388476872 388477592 0.000000e+00 904.0
16 TraesCS6B01G211500 chr2A 88.404 733 68 8 1916 2646 387613747 387614464 0.000000e+00 867.0
17 TraesCS6B01G211500 chr2A 92.992 371 23 2 1984 2353 2932453 2932085 3.000000e-149 538.0
18 TraesCS6B01G211500 chr2A 89.076 238 16 5 2409 2646 2932082 2931855 1.200000e-73 287.0
19 TraesCS6B01G211500 chr3D 91.540 591 42 7 1938 2526 15220844 15220260 0.000000e+00 808.0
20 TraesCS6B01G211500 chr3D 95.122 41 0 1 1788 1828 275614771 275614733 2.200000e-06 63.9
21 TraesCS6B01G211500 chr3A 87.228 736 56 13 1914 2646 247328939 247328239 0.000000e+00 804.0
22 TraesCS6B01G211500 chr5A 87.573 684 40 15 223 867 622729134 622728457 0.000000e+00 750.0
23 TraesCS6B01G211500 chr4D 85.673 691 44 22 224 867 219678937 219679619 0.000000e+00 676.0
24 TraesCS6B01G211500 chr2D 90.593 489 38 4 2162 2646 590020462 590019978 2.220000e-180 641.0
25 TraesCS6B01G211500 chr2D 81.070 243 32 12 467 703 619264900 619265134 5.820000e-42 182.0
26 TraesCS6B01G211500 chr7B 86.553 409 31 16 472 867 664216847 664217244 1.880000e-116 429.0
27 TraesCS6B01G211500 chr7B 95.122 41 0 2 1789 1827 715363151 715363111 2.200000e-06 63.9
28 TraesCS6B01G211500 chr2B 85.294 374 23 13 224 572 117190047 117190413 9.010000e-95 357.0
29 TraesCS6B01G211500 chr5B 86.395 147 14 5 1 145 226754778 226754920 3.530000e-34 156.0
30 TraesCS6B01G211500 chr5B 92.000 75 5 1 140 213 226754946 226755020 1.300000e-18 104.0
31 TraesCS6B01G211500 chr5B 94.872 39 0 1 1789 1827 458718017 458717981 2.840000e-05 60.2
32 TraesCS6B01G211500 chr7A 93.182 44 1 2 1785 1826 471045187 471045144 2.200000e-06 63.9
33 TraesCS6B01G211500 chr4A 95.000 40 0 2 1789 1828 694441514 694441477 7.910000e-06 62.1
34 TraesCS6B01G211500 chr1A 94.872 39 2 0 1789 1827 12009025 12008987 7.910000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G211500 chr6B 279197816 279200461 2645 False 4887.0 4887 100.000 1 2646 1 chr6B.!!$F4 2645
1 TraesCS6B01G211500 chr6A 212356831 212357621 790 True 1123.0 1123 92.385 998 1789 1 chr6A.!!$R1 791
2 TraesCS6B01G211500 chr6D 156730760 156731547 787 False 990.0 990 89.460 998 1785 1 chr6D.!!$F1 787
3 TraesCS6B01G211500 chr6D 291608789 291609505 716 True 907.0 907 89.466 1920 2646 1 chr6D.!!$R1 726
4 TraesCS6B01G211500 chr7D 613845816 613846537 721 True 942.0 942 90.204 1916 2646 1 chr7D.!!$R1 730
5 TraesCS6B01G211500 chr5D 419465504 419466231 727 True 915.0 915 89.488 1916 2646 1 chr5D.!!$R1 730
6 TraesCS6B01G211500 chr2A 388476872 388477592 720 False 904.0 904 89.237 1916 2646 1 chr2A.!!$F2 730
7 TraesCS6B01G211500 chr2A 387613747 387614464 717 False 867.0 867 88.404 1916 2646 1 chr2A.!!$F1 730
8 TraesCS6B01G211500 chr2A 2931855 2932453 598 True 412.5 538 91.034 1984 2646 2 chr2A.!!$R1 662
9 TraesCS6B01G211500 chr3D 15220260 15220844 584 True 808.0 808 91.540 1938 2526 1 chr3D.!!$R1 588
10 TraesCS6B01G211500 chr3A 247328239 247328939 700 True 804.0 804 87.228 1914 2646 1 chr3A.!!$R1 732
11 TraesCS6B01G211500 chr5A 622728457 622729134 677 True 750.0 750 87.573 223 867 1 chr5A.!!$R1 644
12 TraesCS6B01G211500 chr4D 219678937 219679619 682 False 676.0 676 85.673 224 867 1 chr4D.!!$F1 643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
661 688 0.032813 AATTGGGTGCTATGGCTGCT 60.033 50.0 1.68 0.0 39.59 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1870 1932 0.034186 ATGTGTACCATGTGGCCTGG 60.034 55.0 3.32 6.05 39.32 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 8.986847 TCTCATAACAAGAGTACGTACTATAGC 58.013 37.037 27.44 15.21 36.50 2.97
61 62 8.667076 TCATAACAAGAGTACGTACTATAGCA 57.333 34.615 27.44 12.10 36.50 3.49
62 63 9.112725 TCATAACAAGAGTACGTACTATAGCAA 57.887 33.333 27.44 12.90 36.50 3.91
63 64 9.726232 CATAACAAGAGTACGTACTATAGCAAA 57.274 33.333 27.44 11.50 36.50 3.68
64 65 9.727627 ATAACAAGAGTACGTACTATAGCAAAC 57.272 33.333 27.44 12.74 36.50 2.93
65 66 6.558909 ACAAGAGTACGTACTATAGCAAACC 58.441 40.000 27.44 12.05 36.50 3.27
66 67 5.415415 AGAGTACGTACTATAGCAAACCG 57.585 43.478 27.44 0.00 36.50 4.44
67 68 4.274459 AGAGTACGTACTATAGCAAACCGG 59.726 45.833 27.44 0.00 36.50 5.28
68 69 3.947834 AGTACGTACTATAGCAAACCGGT 59.052 43.478 26.36 0.00 34.13 5.28
69 70 3.874392 ACGTACTATAGCAAACCGGTT 57.126 42.857 15.86 15.86 0.00 4.44
70 71 3.514645 ACGTACTATAGCAAACCGGTTG 58.485 45.455 23.08 15.88 40.50 3.77
71 72 2.861935 CGTACTATAGCAAACCGGTTGG 59.138 50.000 23.08 20.43 37.73 3.77
110 111 8.492673 TCAGTACATACTCTAGCAAATTTTGG 57.507 34.615 10.96 0.00 33.46 3.28
111 112 8.318412 TCAGTACATACTCTAGCAAATTTTGGA 58.682 33.333 10.96 0.00 33.46 3.53
112 113 8.607459 CAGTACATACTCTAGCAAATTTTGGAG 58.393 37.037 10.96 10.70 33.46 3.86
113 114 8.540388 AGTACATACTCTAGCAAATTTTGGAGA 58.460 33.333 16.11 2.46 0.00 3.71
114 115 7.856145 ACATACTCTAGCAAATTTTGGAGAG 57.144 36.000 16.11 12.14 37.14 3.20
115 116 7.624549 ACATACTCTAGCAAATTTTGGAGAGA 58.375 34.615 19.60 9.17 35.48 3.10
116 117 8.103305 ACATACTCTAGCAAATTTTGGAGAGAA 58.897 33.333 19.60 4.61 35.48 2.87
117 118 8.950210 CATACTCTAGCAAATTTTGGAGAGAAA 58.050 33.333 19.60 11.45 35.48 2.52
118 119 7.823745 ACTCTAGCAAATTTTGGAGAGAAAA 57.176 32.000 19.60 0.00 35.48 2.29
119 120 8.237811 ACTCTAGCAAATTTTGGAGAGAAAAA 57.762 30.769 19.60 0.00 35.48 1.94
120 121 8.355913 ACTCTAGCAAATTTTGGAGAGAAAAAG 58.644 33.333 19.60 2.19 35.48 2.27
121 122 8.463930 TCTAGCAAATTTTGGAGAGAAAAAGA 57.536 30.769 10.96 0.00 30.52 2.52
122 123 8.912988 TCTAGCAAATTTTGGAGAGAAAAAGAA 58.087 29.630 10.96 0.00 30.52 2.52
123 124 9.533253 CTAGCAAATTTTGGAGAGAAAAAGAAA 57.467 29.630 10.96 0.00 30.52 2.52
124 125 8.791327 AGCAAATTTTGGAGAGAAAAAGAAAA 57.209 26.923 10.96 0.00 30.52 2.29
125 126 9.230122 AGCAAATTTTGGAGAGAAAAAGAAAAA 57.770 25.926 10.96 0.00 30.52 1.94
126 127 9.277565 GCAAATTTTGGAGAGAAAAAGAAAAAC 57.722 29.630 10.96 0.00 30.52 2.43
127 128 9.476761 CAAATTTTGGAGAGAAAAAGAAAAACG 57.523 29.630 0.97 0.00 30.52 3.60
128 129 8.996024 AATTTTGGAGAGAAAAAGAAAAACGA 57.004 26.923 0.00 0.00 30.52 3.85
129 130 8.634475 ATTTTGGAGAGAAAAAGAAAAACGAG 57.366 30.769 0.00 0.00 30.52 4.18
130 131 6.995511 TTGGAGAGAAAAAGAAAAACGAGA 57.004 33.333 0.00 0.00 0.00 4.04
131 132 6.359480 TGGAGAGAAAAAGAAAAACGAGAC 57.641 37.500 0.00 0.00 0.00 3.36
132 133 5.878116 TGGAGAGAAAAAGAAAAACGAGACA 59.122 36.000 0.00 0.00 0.00 3.41
133 134 6.373216 TGGAGAGAAAAAGAAAAACGAGACAA 59.627 34.615 0.00 0.00 0.00 3.18
134 135 6.907748 GGAGAGAAAAAGAAAAACGAGACAAG 59.092 38.462 0.00 0.00 0.00 3.16
135 136 6.258899 AGAGAAAAAGAAAAACGAGACAAGC 58.741 36.000 0.00 0.00 0.00 4.01
136 137 5.028375 AGAAAAAGAAAAACGAGACAAGCG 58.972 37.500 0.00 0.00 0.00 4.68
137 138 4.609691 AAAAGAAAAACGAGACAAGCGA 57.390 36.364 0.00 0.00 0.00 4.93
138 139 4.813296 AAAGAAAAACGAGACAAGCGAT 57.187 36.364 0.00 0.00 0.00 4.58
139 140 4.391140 AAGAAAAACGAGACAAGCGATC 57.609 40.909 0.00 0.00 0.00 3.69
140 141 2.408704 AGAAAAACGAGACAAGCGATCG 59.591 45.455 11.69 11.69 42.04 3.69
141 142 2.060326 AAAACGAGACAAGCGATCGA 57.940 45.000 21.57 0.00 39.66 3.59
142 143 1.618861 AAACGAGACAAGCGATCGAG 58.381 50.000 21.57 10.21 39.66 4.04
143 144 0.798771 AACGAGACAAGCGATCGAGC 60.799 55.000 21.57 1.03 39.66 5.03
144 145 2.282361 CGAGACAAGCGATCGAGCG 61.282 63.158 20.40 20.40 43.00 5.03
145 146 1.062685 GAGACAAGCGATCGAGCGA 59.937 57.895 29.29 0.00 43.00 4.93
146 147 0.927994 GAGACAAGCGATCGAGCGAG 60.928 60.000 29.29 17.51 43.00 5.03
147 148 2.572448 GACAAGCGATCGAGCGAGC 61.572 63.158 29.29 10.18 43.00 5.03
171 172 4.389576 GGCCAGCGAGCGTTGTTG 62.390 66.667 0.00 0.00 0.00 3.33
172 173 4.389576 GCCAGCGAGCGTTGTTGG 62.390 66.667 6.02 4.78 0.00 3.77
173 174 3.726517 CCAGCGAGCGTTGTTGGG 61.727 66.667 6.02 0.00 0.00 4.12
174 175 4.389576 CAGCGAGCGTTGTTGGGC 62.390 66.667 0.00 0.00 0.00 5.36
177 178 3.726517 CGAGCGTTGTTGGGCCTG 61.727 66.667 4.53 0.00 0.00 4.85
178 179 2.281484 GAGCGTTGTTGGGCCTGA 60.281 61.111 4.53 0.00 0.00 3.86
179 180 2.594592 AGCGTTGTTGGGCCTGAC 60.595 61.111 4.53 4.21 0.00 3.51
180 181 3.670377 GCGTTGTTGGGCCTGACC 61.670 66.667 4.53 0.00 37.93 4.02
181 182 2.203280 CGTTGTTGGGCCTGACCA 60.203 61.111 4.53 0.00 42.05 4.02
182 183 2.260869 CGTTGTTGGGCCTGACCAG 61.261 63.158 4.53 0.00 42.47 4.00
191 192 2.743928 CCTGACCAGGCAAGCGAC 60.744 66.667 2.75 0.00 42.44 5.19
192 193 3.114616 CTGACCAGGCAAGCGACG 61.115 66.667 0.00 0.00 0.00 5.12
252 253 1.849829 CCACCGCAAAGAAAAACGTTC 59.150 47.619 0.00 0.00 0.00 3.95
281 282 0.809385 CTTCCTCGCTCGAACAGGTA 59.191 55.000 4.35 0.00 0.00 3.08
308 311 1.069204 TCCCACAGCGCAATATCTCTC 59.931 52.381 11.47 0.00 0.00 3.20
336 341 2.031069 TCTCGTTCTGTTCCTCACGAAG 60.031 50.000 0.00 0.00 0.00 3.79
405 410 0.100682 TGCTCTTCCGCGTACAGATC 59.899 55.000 4.92 0.00 0.00 2.75
429 434 0.914417 CTTCCCAGGCCTTGTCCCTA 60.914 60.000 0.00 0.00 0.00 3.53
438 443 0.104304 CCTTGTCCCTACGATTCCCG 59.896 60.000 0.00 0.00 45.44 5.14
572 598 0.468226 AAACCTCAACGTGAGCTCCA 59.532 50.000 12.15 0.00 42.98 3.86
584 610 1.352017 TGAGCTCCATTGCCTTCTTCA 59.648 47.619 12.15 0.00 0.00 3.02
611 638 5.009631 TGTTCTGCATGGTAGTTAGCATTT 58.990 37.500 1.30 0.00 41.99 2.32
661 688 0.032813 AATTGGGTGCTATGGCTGCT 60.033 50.000 1.68 0.00 39.59 4.24
682 709 7.168972 GCTGCTGAATGTGTAAATGTTTTGTTA 59.831 33.333 0.00 0.00 0.00 2.41
688 715 9.672086 GAATGTGTAAATGTTTTGTTAGCTGTA 57.328 29.630 0.00 0.00 0.00 2.74
711 738 7.984617 TGTATAGTGCTATATGTGTGAAAGCAA 59.015 33.333 2.68 0.00 44.16 3.91
737 764 1.466167 GTGTGCACTAGGTTGCTGATG 59.534 52.381 19.41 0.00 43.41 3.07
756 783 7.114920 GCTGATGAATGTGCAATTTTTATTCG 58.885 34.615 0.00 0.00 32.01 3.34
759 786 9.071221 TGATGAATGTGCAATTTTTATTCGTAC 57.929 29.630 0.00 0.00 32.01 3.67
760 787 9.289303 GATGAATGTGCAATTTTTATTCGTACT 57.711 29.630 0.00 0.00 32.01 2.73
761 788 8.446489 TGAATGTGCAATTTTTATTCGTACTG 57.554 30.769 0.00 0.00 32.01 2.74
790 828 4.142924 TGTGCTATATGTGTGAAAGCAACG 60.143 41.667 0.00 0.00 44.16 4.10
807 845 5.708948 AGCAACGTATATGTGTGCAAAAAT 58.291 33.333 22.74 0.00 0.00 1.82
818 856 3.873952 GTGTGCAAAAATTTTGGTGGCTA 59.126 39.130 18.67 0.00 0.00 3.93
822 860 4.514441 TGCAAAAATTTTGGTGGCTATGTG 59.486 37.500 18.67 0.00 0.00 3.21
823 861 4.514816 GCAAAAATTTTGGTGGCTATGTGT 59.485 37.500 18.67 0.00 0.00 3.72
824 862 5.560567 GCAAAAATTTTGGTGGCTATGTGTG 60.561 40.000 18.67 0.00 0.00 3.82
825 863 3.317603 AATTTTGGTGGCTATGTGTGC 57.682 42.857 0.00 0.00 0.00 4.57
826 864 1.697284 TTTTGGTGGCTATGTGTGCA 58.303 45.000 0.00 0.00 0.00 4.57
867 917 2.038952 AGTAGGTTGCTGCTGAATGTGA 59.961 45.455 0.00 0.00 0.00 3.58
868 918 1.531423 AGGTTGCTGCTGAATGTGAG 58.469 50.000 0.00 0.00 0.00 3.51
869 919 1.072806 AGGTTGCTGCTGAATGTGAGA 59.927 47.619 0.00 0.00 0.00 3.27
870 920 1.881973 GGTTGCTGCTGAATGTGAGAA 59.118 47.619 0.00 0.00 0.00 2.87
871 921 2.095364 GGTTGCTGCTGAATGTGAGAAG 60.095 50.000 0.00 0.00 0.00 2.85
872 922 1.162698 TGCTGCTGAATGTGAGAAGC 58.837 50.000 0.00 0.00 36.18 3.86
873 923 0.450983 GCTGCTGAATGTGAGAAGCC 59.549 55.000 0.00 0.00 34.70 4.35
874 924 1.817357 CTGCTGAATGTGAGAAGCCA 58.183 50.000 0.00 0.00 34.70 4.75
875 925 2.156917 CTGCTGAATGTGAGAAGCCAA 58.843 47.619 0.00 0.00 34.70 4.52
876 926 2.156917 TGCTGAATGTGAGAAGCCAAG 58.843 47.619 0.00 0.00 34.70 3.61
877 927 2.157738 GCTGAATGTGAGAAGCCAAGT 58.842 47.619 0.00 0.00 0.00 3.16
878 928 2.555757 GCTGAATGTGAGAAGCCAAGTT 59.444 45.455 0.00 0.00 0.00 2.66
879 929 3.365767 GCTGAATGTGAGAAGCCAAGTTC 60.366 47.826 0.00 0.00 0.00 3.01
880 930 3.817084 CTGAATGTGAGAAGCCAAGTTCA 59.183 43.478 0.00 0.00 0.00 3.18
881 931 3.817084 TGAATGTGAGAAGCCAAGTTCAG 59.183 43.478 0.00 0.00 0.00 3.02
882 932 3.777106 ATGTGAGAAGCCAAGTTCAGA 57.223 42.857 0.00 0.00 0.00 3.27
883 933 3.558931 TGTGAGAAGCCAAGTTCAGAA 57.441 42.857 0.00 0.00 0.00 3.02
884 934 3.470709 TGTGAGAAGCCAAGTTCAGAAG 58.529 45.455 0.00 0.00 0.00 2.85
885 935 2.225255 GTGAGAAGCCAAGTTCAGAAGC 59.775 50.000 0.00 0.00 0.00 3.86
886 936 1.809547 GAGAAGCCAAGTTCAGAAGCC 59.190 52.381 0.00 0.00 0.00 4.35
887 937 0.519077 GAAGCCAAGTTCAGAAGCCG 59.481 55.000 0.00 0.00 0.00 5.52
888 938 0.108585 AAGCCAAGTTCAGAAGCCGA 59.891 50.000 0.00 0.00 0.00 5.54
889 939 0.108585 AGCCAAGTTCAGAAGCCGAA 59.891 50.000 0.00 0.00 0.00 4.30
890 940 1.168714 GCCAAGTTCAGAAGCCGAAT 58.831 50.000 0.00 0.00 0.00 3.34
891 941 1.131315 GCCAAGTTCAGAAGCCGAATC 59.869 52.381 0.00 0.00 0.00 2.52
892 942 1.740025 CCAAGTTCAGAAGCCGAATCC 59.260 52.381 0.00 0.00 0.00 3.01
893 943 1.394917 CAAGTTCAGAAGCCGAATCCG 59.605 52.381 0.00 0.00 0.00 4.18
907 957 4.119442 CGAATCCGGGAAGTTTTAGAGA 57.881 45.455 0.00 0.00 0.00 3.10
908 958 4.501071 CGAATCCGGGAAGTTTTAGAGAA 58.499 43.478 0.00 0.00 0.00 2.87
909 959 4.567159 CGAATCCGGGAAGTTTTAGAGAAG 59.433 45.833 0.00 0.00 0.00 2.85
910 960 5.489249 GAATCCGGGAAGTTTTAGAGAAGT 58.511 41.667 0.00 0.00 0.00 3.01
911 961 4.267349 TCCGGGAAGTTTTAGAGAAGTG 57.733 45.455 0.00 0.00 0.00 3.16
912 962 3.007614 TCCGGGAAGTTTTAGAGAAGTGG 59.992 47.826 0.00 0.00 0.00 4.00
913 963 3.007614 CCGGGAAGTTTTAGAGAAGTGGA 59.992 47.826 0.00 0.00 0.00 4.02
914 964 4.246458 CGGGAAGTTTTAGAGAAGTGGAG 58.754 47.826 0.00 0.00 0.00 3.86
915 965 4.021368 CGGGAAGTTTTAGAGAAGTGGAGA 60.021 45.833 0.00 0.00 0.00 3.71
916 966 5.337652 CGGGAAGTTTTAGAGAAGTGGAGAT 60.338 44.000 0.00 0.00 0.00 2.75
917 967 6.110033 GGGAAGTTTTAGAGAAGTGGAGATC 58.890 44.000 0.00 0.00 0.00 2.75
918 968 6.295916 GGGAAGTTTTAGAGAAGTGGAGATCA 60.296 42.308 0.00 0.00 0.00 2.92
919 969 6.816140 GGAAGTTTTAGAGAAGTGGAGATCAG 59.184 42.308 0.00 0.00 0.00 2.90
920 970 7.310113 GGAAGTTTTAGAGAAGTGGAGATCAGA 60.310 40.741 0.00 0.00 0.00 3.27
921 971 7.546250 AGTTTTAGAGAAGTGGAGATCAGAA 57.454 36.000 0.00 0.00 0.00 3.02
922 972 7.382898 AGTTTTAGAGAAGTGGAGATCAGAAC 58.617 38.462 0.00 0.00 0.00 3.01
923 973 6.918067 TTTAGAGAAGTGGAGATCAGAACA 57.082 37.500 0.00 0.00 0.00 3.18
924 974 6.522625 TTAGAGAAGTGGAGATCAGAACAG 57.477 41.667 0.00 0.00 0.00 3.16
925 975 3.768757 AGAGAAGTGGAGATCAGAACAGG 59.231 47.826 0.00 0.00 0.00 4.00
926 976 2.235898 AGAAGTGGAGATCAGAACAGGC 59.764 50.000 0.00 0.00 0.00 4.85
927 977 0.908198 AGTGGAGATCAGAACAGGCC 59.092 55.000 0.00 0.00 0.00 5.19
928 978 0.908198 GTGGAGATCAGAACAGGCCT 59.092 55.000 0.00 0.00 0.00 5.19
929 979 1.280421 GTGGAGATCAGAACAGGCCTT 59.720 52.381 0.00 0.00 0.00 4.35
930 980 2.501723 GTGGAGATCAGAACAGGCCTTA 59.498 50.000 0.00 0.00 0.00 2.69
931 981 2.768527 TGGAGATCAGAACAGGCCTTAG 59.231 50.000 0.00 0.00 0.00 2.18
932 982 2.103941 GGAGATCAGAACAGGCCTTAGG 59.896 54.545 0.00 0.00 0.00 2.69
945 995 1.859302 CCTTAGGCACTCTGAGTCCT 58.141 55.000 23.15 23.15 41.75 3.85
946 996 1.480137 CCTTAGGCACTCTGAGTCCTG 59.520 57.143 25.82 16.26 41.75 3.86
947 997 2.451490 CTTAGGCACTCTGAGTCCTGA 58.549 52.381 25.82 20.46 41.75 3.86
948 998 1.840737 TAGGCACTCTGAGTCCTGAC 58.159 55.000 25.82 13.08 41.75 3.51
949 999 0.114168 AGGCACTCTGAGTCCTGACT 59.886 55.000 20.69 10.96 45.84 3.41
957 1007 3.813150 AGTCCTGACTCCCTTGCC 58.187 61.111 0.00 0.00 36.92 4.52
958 1008 1.152030 AGTCCTGACTCCCTTGCCA 60.152 57.895 0.00 0.00 36.92 4.92
959 1009 0.768221 AGTCCTGACTCCCTTGCCAA 60.768 55.000 0.00 0.00 36.92 4.52
960 1010 0.606673 GTCCTGACTCCCTTGCCAAC 60.607 60.000 0.00 0.00 0.00 3.77
961 1011 1.303643 CCTGACTCCCTTGCCAACC 60.304 63.158 0.00 0.00 0.00 3.77
962 1012 1.763770 CTGACTCCCTTGCCAACCT 59.236 57.895 0.00 0.00 0.00 3.50
963 1013 0.607489 CTGACTCCCTTGCCAACCTG 60.607 60.000 0.00 0.00 0.00 4.00
964 1014 1.059584 TGACTCCCTTGCCAACCTGA 61.060 55.000 0.00 0.00 0.00 3.86
965 1015 0.322008 GACTCCCTTGCCAACCTGAG 60.322 60.000 0.00 0.00 0.00 3.35
966 1016 1.676967 CTCCCTTGCCAACCTGAGC 60.677 63.158 0.00 0.00 0.00 4.26
967 1017 3.058160 CCCTTGCCAACCTGAGCG 61.058 66.667 0.00 0.00 0.00 5.03
968 1018 3.741476 CCTTGCCAACCTGAGCGC 61.741 66.667 0.00 0.00 0.00 5.92
969 1019 2.670934 CTTGCCAACCTGAGCGCT 60.671 61.111 11.27 11.27 0.00 5.92
970 1020 2.974489 CTTGCCAACCTGAGCGCTG 61.974 63.158 18.48 2.15 0.00 5.18
974 1024 2.979676 CAACCTGAGCGCTGCCAA 60.980 61.111 18.48 0.00 0.00 4.52
975 1025 2.980233 AACCTGAGCGCTGCCAAC 60.980 61.111 18.48 0.00 0.00 3.77
976 1026 3.772853 AACCTGAGCGCTGCCAACA 62.773 57.895 18.48 4.80 0.00 3.33
977 1027 2.749044 CCTGAGCGCTGCCAACAT 60.749 61.111 18.48 0.00 0.00 2.71
978 1028 1.450134 CCTGAGCGCTGCCAACATA 60.450 57.895 18.48 0.00 0.00 2.29
979 1029 0.816825 CCTGAGCGCTGCCAACATAT 60.817 55.000 18.48 0.00 0.00 1.78
980 1030 1.019673 CTGAGCGCTGCCAACATATT 58.980 50.000 18.48 0.00 0.00 1.28
981 1031 2.212652 CTGAGCGCTGCCAACATATTA 58.787 47.619 18.48 0.00 0.00 0.98
982 1032 2.613595 CTGAGCGCTGCCAACATATTAA 59.386 45.455 18.48 0.00 0.00 1.40
983 1033 2.613595 TGAGCGCTGCCAACATATTAAG 59.386 45.455 18.48 0.00 0.00 1.85
984 1034 1.334869 AGCGCTGCCAACATATTAAGC 59.665 47.619 10.39 0.00 0.00 3.09
985 1035 1.600413 GCGCTGCCAACATATTAAGCC 60.600 52.381 0.00 0.00 0.00 4.35
986 1036 1.334059 CGCTGCCAACATATTAAGCCG 60.334 52.381 0.00 0.00 0.00 5.52
987 1037 1.676006 GCTGCCAACATATTAAGCCGT 59.324 47.619 0.00 0.00 0.00 5.68
988 1038 2.541588 GCTGCCAACATATTAAGCCGTG 60.542 50.000 0.00 0.00 0.00 4.94
989 1039 1.403679 TGCCAACATATTAAGCCGTGC 59.596 47.619 0.00 0.00 0.00 5.34
990 1040 1.403679 GCCAACATATTAAGCCGTGCA 59.596 47.619 0.00 0.00 0.00 4.57
991 1041 2.794631 GCCAACATATTAAGCCGTGCAC 60.795 50.000 6.82 6.82 0.00 4.57
992 1042 2.421775 CCAACATATTAAGCCGTGCACA 59.578 45.455 18.64 0.00 0.00 4.57
993 1043 3.487376 CCAACATATTAAGCCGTGCACAG 60.487 47.826 18.64 6.69 0.00 3.66
994 1044 2.985896 ACATATTAAGCCGTGCACAGT 58.014 42.857 18.64 0.53 0.00 3.55
995 1045 3.343617 ACATATTAAGCCGTGCACAGTT 58.656 40.909 18.64 9.00 0.00 3.16
996 1046 3.756434 ACATATTAAGCCGTGCACAGTTT 59.244 39.130 18.64 12.58 0.00 2.66
1008 1058 1.400242 GCACAGTTTTCGATGGCACTC 60.400 52.381 0.00 0.00 0.00 3.51
1011 1061 0.602638 AGTTTTCGATGGCACTCGCA 60.603 50.000 12.44 2.07 41.24 5.10
1040 1090 1.795170 CTGGCCACCACAGTTTTCGG 61.795 60.000 0.00 0.00 0.00 4.30
1119 1169 0.033504 GCAACCTCTGGTTCTCGACA 59.966 55.000 0.00 0.00 43.05 4.35
1138 1188 9.178758 TCTCGACATTCATGTATGCTACTATAT 57.821 33.333 11.83 0.00 41.95 0.86
1186 1241 2.894126 TGTTCAACCAACACCACTTTGT 59.106 40.909 0.00 0.00 40.29 2.83
1207 1262 2.773661 TCATGCAGATTCCTCAAGGCTA 59.226 45.455 0.00 0.00 34.44 3.93
1314 1369 0.106819 GCTGTGAGATGATGGGGCTT 60.107 55.000 0.00 0.00 0.00 4.35
1350 1405 4.085009 GGGTACCGTATAGTAGCATCCTT 58.915 47.826 5.65 0.00 41.46 3.36
1369 1424 3.604129 TTTCATGCTCGCCGGCTCA 62.604 57.895 26.68 19.35 0.00 4.26
1386 1441 2.892374 CTCACGCAACCATATCTGTCA 58.108 47.619 0.00 0.00 0.00 3.58
1398 1453 4.381612 CCATATCTGTCAACCTACGTGTGT 60.382 45.833 0.00 0.00 0.00 3.72
1553 1608 4.878682 CCGCCGGCGTACTTACCC 62.879 72.222 43.12 2.88 37.81 3.69
1575 1630 2.594592 GGCGTGGGCTTTCACTGT 60.595 61.111 0.00 0.00 39.81 3.55
1578 1633 1.966451 CGTGGGCTTTCACTGTCCC 60.966 63.158 0.00 0.00 39.22 4.46
1582 1637 1.966451 GGCTTTCACTGTCCCGGTG 60.966 63.158 0.00 0.00 41.65 4.94
1665 1723 0.834687 TGGGCGGTCAACTTCTACCT 60.835 55.000 0.00 0.00 33.34 3.08
1666 1724 1.188863 GGGCGGTCAACTTCTACCTA 58.811 55.000 0.00 0.00 33.34 3.08
1667 1725 1.551883 GGGCGGTCAACTTCTACCTAA 59.448 52.381 0.00 0.00 33.34 2.69
1668 1726 2.418334 GGGCGGTCAACTTCTACCTAAG 60.418 54.545 0.00 0.00 33.34 2.18
1669 1727 2.494870 GGCGGTCAACTTCTACCTAAGA 59.505 50.000 0.00 0.00 33.34 2.10
1670 1728 3.056322 GGCGGTCAACTTCTACCTAAGAA 60.056 47.826 0.00 0.00 42.07 2.52
1671 1729 4.562143 GGCGGTCAACTTCTACCTAAGAAA 60.562 45.833 0.00 0.00 43.66 2.52
1672 1730 4.626172 GCGGTCAACTTCTACCTAAGAAAG 59.374 45.833 0.00 0.00 43.66 2.62
1789 1851 5.713861 ACGTACTACCCCCTATGATTATGAC 59.286 44.000 0.00 0.00 0.00 3.06
1790 1852 5.950549 CGTACTACCCCCTATGATTATGACT 59.049 44.000 0.00 0.00 0.00 3.41
1791 1853 7.114754 CGTACTACCCCCTATGATTATGACTA 58.885 42.308 0.00 0.00 0.00 2.59
1792 1854 7.282675 CGTACTACCCCCTATGATTATGACTAG 59.717 44.444 0.00 0.00 0.00 2.57
1793 1855 6.503944 ACTACCCCCTATGATTATGACTAGG 58.496 44.000 0.00 0.00 0.00 3.02
1794 1856 5.633473 ACCCCCTATGATTATGACTAGGA 57.367 43.478 0.00 0.00 33.93 2.94
1795 1857 5.989717 ACCCCCTATGATTATGACTAGGAA 58.010 41.667 0.00 0.00 33.93 3.36
1796 1858 6.399013 ACCCCCTATGATTATGACTAGGAAA 58.601 40.000 0.00 0.00 33.93 3.13
1797 1859 6.272558 ACCCCCTATGATTATGACTAGGAAAC 59.727 42.308 0.00 0.00 33.93 2.78
1798 1860 6.272324 CCCCCTATGATTATGACTAGGAAACA 59.728 42.308 0.00 0.00 33.93 2.83
1799 1861 7.037297 CCCCCTATGATTATGACTAGGAAACAT 60.037 40.741 0.00 0.00 33.93 2.71
1800 1862 7.826252 CCCCTATGATTATGACTAGGAAACATG 59.174 40.741 0.00 0.00 33.93 3.21
1801 1863 7.335422 CCCTATGATTATGACTAGGAAACATGC 59.665 40.741 0.00 0.00 33.93 4.06
1802 1864 7.335422 CCTATGATTATGACTAGGAAACATGCC 59.665 40.741 0.00 0.00 33.93 4.40
1803 1865 5.376625 TGATTATGACTAGGAAACATGCCC 58.623 41.667 0.00 0.00 0.00 5.36
1804 1866 4.853468 TTATGACTAGGAAACATGCCCA 57.147 40.909 0.00 0.00 0.00 5.36
1805 1867 3.959495 ATGACTAGGAAACATGCCCAT 57.041 42.857 0.00 0.00 0.00 4.00
1806 1868 3.003394 TGACTAGGAAACATGCCCATG 57.997 47.619 6.71 6.71 44.15 3.66
1807 1869 1.678101 GACTAGGAAACATGCCCATGC 59.322 52.381 8.11 0.00 42.39 4.06
1808 1870 0.664761 CTAGGAAACATGCCCATGCG 59.335 55.000 8.11 0.00 42.39 4.73
1809 1871 0.034574 TAGGAAACATGCCCATGCGT 60.035 50.000 8.11 0.00 42.39 5.24
1810 1872 0.899717 AGGAAACATGCCCATGCGTT 60.900 50.000 8.11 3.30 42.39 4.84
1811 1873 0.737019 GGAAACATGCCCATGCGTTG 60.737 55.000 8.11 0.00 42.39 4.10
1812 1874 1.353609 GAAACATGCCCATGCGTTGC 61.354 55.000 8.11 0.00 42.39 4.17
1813 1875 2.097201 AAACATGCCCATGCGTTGCA 62.097 50.000 8.11 2.57 44.86 4.08
1814 1876 2.097201 AACATGCCCATGCGTTGCAA 62.097 50.000 8.11 0.00 43.62 4.08
1815 1877 2.095847 CATGCCCATGCGTTGCAAC 61.096 57.895 19.89 19.89 43.62 4.17
1842 1904 3.058115 AAAAACCTGTTGTTGCCGC 57.942 47.368 0.00 0.00 37.23 6.53
1843 1905 0.461163 AAAAACCTGTTGTTGCCGCC 60.461 50.000 0.00 0.00 37.23 6.13
1844 1906 1.608717 AAAACCTGTTGTTGCCGCCA 61.609 50.000 0.00 0.00 37.23 5.69
1845 1907 2.291457 AAACCTGTTGTTGCCGCCAC 62.291 55.000 0.00 0.00 37.23 5.01
1846 1908 3.977244 CCTGTTGTTGCCGCCACC 61.977 66.667 0.00 0.00 0.00 4.61
1847 1909 4.326766 CTGTTGTTGCCGCCACCG 62.327 66.667 0.00 0.00 0.00 4.94
1865 1927 3.699894 CCCGCTCTGCCTGTCACT 61.700 66.667 0.00 0.00 0.00 3.41
1866 1928 2.345244 CCGCTCTGCCTGTCACTT 59.655 61.111 0.00 0.00 0.00 3.16
1867 1929 1.739562 CCGCTCTGCCTGTCACTTC 60.740 63.158 0.00 0.00 0.00 3.01
1868 1930 2.091112 CGCTCTGCCTGTCACTTCG 61.091 63.158 0.00 0.00 0.00 3.79
1869 1931 1.739562 GCTCTGCCTGTCACTTCGG 60.740 63.158 0.00 0.00 0.00 4.30
1870 1932 1.739562 CTCTGCCTGTCACTTCGGC 60.740 63.158 0.00 0.00 44.02 5.54
1871 1933 2.743928 CTGCCTGTCACTTCGGCC 60.744 66.667 0.00 0.00 43.12 6.13
1872 1934 3.535629 CTGCCTGTCACTTCGGCCA 62.536 63.158 2.24 0.00 43.12 5.36
1873 1935 2.743928 GCCTGTCACTTCGGCCAG 60.744 66.667 2.24 0.00 37.86 4.85
1874 1936 2.046892 CCTGTCACTTCGGCCAGG 60.047 66.667 2.24 0.00 38.63 4.45
1875 1937 2.743928 CTGTCACTTCGGCCAGGC 60.744 66.667 1.26 1.26 0.00 4.85
1876 1938 4.329545 TGTCACTTCGGCCAGGCC 62.330 66.667 22.33 22.33 46.75 5.19
1897 1959 2.046411 TGGTACACATGCGCCAGG 60.046 61.111 4.18 0.00 0.00 4.45
1898 1960 3.508840 GGTACACATGCGCCAGGC 61.509 66.667 4.18 0.00 43.96 4.85
1899 1961 3.508840 GTACACATGCGCCAGGCC 61.509 66.667 5.63 0.00 42.61 5.19
1900 1962 4.794648 TACACATGCGCCAGGCCC 62.795 66.667 5.63 0.00 42.61 5.80
1926 1988 1.452108 CCATTGGCCTTCGTCTCCC 60.452 63.158 3.32 0.00 0.00 4.30
1929 1991 0.909610 ATTGGCCTTCGTCTCCCTCA 60.910 55.000 3.32 0.00 0.00 3.86
1972 2035 7.283127 GCATATGAAGAAGGATAAACTTGTGGA 59.717 37.037 6.97 0.00 0.00 4.02
2045 2109 1.788886 CGATGACACCTATGCATGACG 59.211 52.381 10.16 0.00 0.00 4.35
2060 2124 3.792956 GCATGACGCAACCTTTCATAATG 59.207 43.478 0.00 0.00 41.79 1.90
2113 2177 6.289834 TGTGTGCATTTCAAATCTTCCAATT 58.710 32.000 0.00 0.00 0.00 2.32
2149 2213 7.645058 ACATTTTTCATAATCTTCCGGATGT 57.355 32.000 16.29 4.60 34.45 3.06
2167 2232 8.293867 TCCGGATGTAAAACTCACTTATTTTTG 58.706 33.333 0.00 0.00 30.80 2.44
2169 2234 9.672086 CGGATGTAAAACTCACTTATTTTTGAA 57.328 29.630 0.00 0.00 30.80 2.69
2220 2285 9.252962 TGATTTTGAAATTTGAAGAAGAGAAGC 57.747 29.630 0.00 0.00 0.00 3.86
2303 2368 7.346471 CAGGAAACCCTTATGAGAATTTCCTA 58.654 38.462 23.13 0.00 45.48 2.94
2366 2432 6.774354 ACATGATTTGTTGATTTGAAGCAC 57.226 33.333 0.00 0.00 33.74 4.40
2473 2541 9.881773 AAGATCCTGCCTCCATTAATAAAATTA 57.118 29.630 0.00 0.00 0.00 1.40
2547 2616 1.299939 AAATTCTCCCAGACCCCTCC 58.700 55.000 0.00 0.00 0.00 4.30
2571 2640 4.383861 CAGGCAGCAGCTCGACCA 62.384 66.667 0.00 0.00 41.70 4.02
2640 2716 3.119096 GCGCACGAGGTCCCTTTC 61.119 66.667 0.30 0.00 0.00 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 8.986847 GCTATAGTACGTACTCTTGTTATGAGA 58.013 37.037 30.53 10.00 37.73 3.27
35 36 8.771766 TGCTATAGTACGTACTCTTGTTATGAG 58.228 37.037 30.53 14.28 37.73 2.90
36 37 8.667076 TGCTATAGTACGTACTCTTGTTATGA 57.333 34.615 30.53 11.27 37.73 2.15
37 38 9.726232 TTTGCTATAGTACGTACTCTTGTTATG 57.274 33.333 30.53 14.04 37.73 1.90
38 39 9.727627 GTTTGCTATAGTACGTACTCTTGTTAT 57.272 33.333 30.53 19.24 37.73 1.89
39 40 8.184192 GGTTTGCTATAGTACGTACTCTTGTTA 58.816 37.037 30.53 13.49 37.73 2.41
40 41 7.031975 GGTTTGCTATAGTACGTACTCTTGTT 58.968 38.462 30.53 14.11 37.73 2.83
41 42 6.558909 GGTTTGCTATAGTACGTACTCTTGT 58.441 40.000 30.53 17.24 37.73 3.16
42 43 5.680229 CGGTTTGCTATAGTACGTACTCTTG 59.320 44.000 30.53 21.68 37.73 3.02
43 44 5.220931 CCGGTTTGCTATAGTACGTACTCTT 60.221 44.000 30.53 20.93 37.73 2.85
44 45 4.274459 CCGGTTTGCTATAGTACGTACTCT 59.726 45.833 30.53 23.04 37.73 3.24
45 46 4.035675 ACCGGTTTGCTATAGTACGTACTC 59.964 45.833 30.53 17.06 37.73 2.59
46 47 3.947834 ACCGGTTTGCTATAGTACGTACT 59.052 43.478 29.62 29.62 40.24 2.73
47 48 4.292977 ACCGGTTTGCTATAGTACGTAC 57.707 45.455 18.10 18.10 0.00 3.67
48 49 4.439974 CCAACCGGTTTGCTATAGTACGTA 60.440 45.833 19.55 0.00 33.34 3.57
49 50 3.514645 CAACCGGTTTGCTATAGTACGT 58.485 45.455 19.55 0.00 0.00 3.57
50 51 2.861935 CCAACCGGTTTGCTATAGTACG 59.138 50.000 19.55 1.07 33.34 3.67
51 52 3.865446 ACCAACCGGTTTGCTATAGTAC 58.135 45.455 19.55 0.00 46.31 2.73
84 85 9.113838 CCAAAATTTGCTAGAGTATGTACTGAT 57.886 33.333 0.00 0.00 36.50 2.90
85 86 8.318412 TCCAAAATTTGCTAGAGTATGTACTGA 58.682 33.333 0.00 0.00 36.50 3.41
86 87 8.492673 TCCAAAATTTGCTAGAGTATGTACTG 57.507 34.615 0.00 0.00 36.50 2.74
87 88 8.540388 TCTCCAAAATTTGCTAGAGTATGTACT 58.460 33.333 0.00 0.00 39.71 2.73
88 89 8.718102 TCTCCAAAATTTGCTAGAGTATGTAC 57.282 34.615 0.00 0.00 0.00 2.90
89 90 8.758829 TCTCTCCAAAATTTGCTAGAGTATGTA 58.241 33.333 23.43 10.72 38.92 2.29
90 91 7.624549 TCTCTCCAAAATTTGCTAGAGTATGT 58.375 34.615 23.43 0.00 38.92 2.29
91 92 8.498054 TTCTCTCCAAAATTTGCTAGAGTATG 57.502 34.615 23.43 9.66 38.92 2.39
92 93 9.520515 TTTTCTCTCCAAAATTTGCTAGAGTAT 57.479 29.630 23.43 0.00 38.92 2.12
93 94 8.918202 TTTTCTCTCCAAAATTTGCTAGAGTA 57.082 30.769 23.43 16.93 38.92 2.59
94 95 7.823745 TTTTCTCTCCAAAATTTGCTAGAGT 57.176 32.000 23.43 0.00 38.92 3.24
95 96 8.571336 TCTTTTTCTCTCCAAAATTTGCTAGAG 58.429 33.333 20.79 20.79 39.06 2.43
96 97 8.463930 TCTTTTTCTCTCCAAAATTTGCTAGA 57.536 30.769 0.00 4.78 0.00 2.43
97 98 9.533253 TTTCTTTTTCTCTCCAAAATTTGCTAG 57.467 29.630 0.00 0.48 0.00 3.42
98 99 9.883142 TTTTCTTTTTCTCTCCAAAATTTGCTA 57.117 25.926 0.00 0.00 0.00 3.49
99 100 8.791327 TTTTCTTTTTCTCTCCAAAATTTGCT 57.209 26.923 0.00 0.00 0.00 3.91
100 101 9.277565 GTTTTTCTTTTTCTCTCCAAAATTTGC 57.722 29.630 0.00 0.00 0.00 3.68
101 102 9.476761 CGTTTTTCTTTTTCTCTCCAAAATTTG 57.523 29.630 0.00 0.00 0.00 2.32
102 103 9.430623 TCGTTTTTCTTTTTCTCTCCAAAATTT 57.569 25.926 0.00 0.00 0.00 1.82
103 104 8.996024 TCGTTTTTCTTTTTCTCTCCAAAATT 57.004 26.923 0.00 0.00 0.00 1.82
104 105 8.466798 TCTCGTTTTTCTTTTTCTCTCCAAAAT 58.533 29.630 0.00 0.00 0.00 1.82
105 106 7.753580 GTCTCGTTTTTCTTTTTCTCTCCAAAA 59.246 33.333 0.00 0.00 0.00 2.44
106 107 7.094549 TGTCTCGTTTTTCTTTTTCTCTCCAAA 60.095 33.333 0.00 0.00 0.00 3.28
107 108 6.373216 TGTCTCGTTTTTCTTTTTCTCTCCAA 59.627 34.615 0.00 0.00 0.00 3.53
108 109 5.878116 TGTCTCGTTTTTCTTTTTCTCTCCA 59.122 36.000 0.00 0.00 0.00 3.86
109 110 6.359480 TGTCTCGTTTTTCTTTTTCTCTCC 57.641 37.500 0.00 0.00 0.00 3.71
110 111 6.412362 GCTTGTCTCGTTTTTCTTTTTCTCTC 59.588 38.462 0.00 0.00 0.00 3.20
111 112 6.258899 GCTTGTCTCGTTTTTCTTTTTCTCT 58.741 36.000 0.00 0.00 0.00 3.10
112 113 5.169738 CGCTTGTCTCGTTTTTCTTTTTCTC 59.830 40.000 0.00 0.00 0.00 2.87
113 114 5.028375 CGCTTGTCTCGTTTTTCTTTTTCT 58.972 37.500 0.00 0.00 0.00 2.52
114 115 5.025826 TCGCTTGTCTCGTTTTTCTTTTTC 58.974 37.500 0.00 0.00 0.00 2.29
115 116 4.976987 TCGCTTGTCTCGTTTTTCTTTTT 58.023 34.783 0.00 0.00 0.00 1.94
116 117 4.609691 TCGCTTGTCTCGTTTTTCTTTT 57.390 36.364 0.00 0.00 0.00 2.27
117 118 4.608445 CGATCGCTTGTCTCGTTTTTCTTT 60.608 41.667 0.26 0.00 0.00 2.52
118 119 3.120991 CGATCGCTTGTCTCGTTTTTCTT 60.121 43.478 0.26 0.00 0.00 2.52
119 120 2.408704 CGATCGCTTGTCTCGTTTTTCT 59.591 45.455 0.26 0.00 0.00 2.52
120 121 2.407361 TCGATCGCTTGTCTCGTTTTTC 59.593 45.455 11.09 0.00 34.19 2.29
121 122 2.400399 TCGATCGCTTGTCTCGTTTTT 58.600 42.857 11.09 0.00 34.19 1.94
122 123 1.986378 CTCGATCGCTTGTCTCGTTTT 59.014 47.619 11.09 0.00 34.19 2.43
123 124 1.618861 CTCGATCGCTTGTCTCGTTT 58.381 50.000 11.09 0.00 34.19 3.60
124 125 0.798771 GCTCGATCGCTTGTCTCGTT 60.799 55.000 11.09 0.00 34.19 3.85
125 126 1.226435 GCTCGATCGCTTGTCTCGT 60.226 57.895 11.09 0.00 34.19 4.18
126 127 2.282361 CGCTCGATCGCTTGTCTCG 61.282 63.158 11.09 1.99 0.00 4.04
127 128 0.927994 CTCGCTCGATCGCTTGTCTC 60.928 60.000 11.09 0.00 0.00 3.36
128 129 1.063327 CTCGCTCGATCGCTTGTCT 59.937 57.895 11.09 0.00 0.00 3.41
129 130 2.572448 GCTCGCTCGATCGCTTGTC 61.572 63.158 11.09 0.00 0.00 3.18
130 131 2.580867 GCTCGCTCGATCGCTTGT 60.581 61.111 11.09 0.00 0.00 3.16
131 132 3.676348 CGCTCGCTCGATCGCTTG 61.676 66.667 11.09 4.24 0.00 4.01
132 133 4.914420 CCGCTCGCTCGATCGCTT 62.914 66.667 11.09 0.00 33.14 4.68
154 155 4.389576 CAACAACGCTCGCTGGCC 62.390 66.667 0.00 0.00 0.00 5.36
155 156 4.389576 CCAACAACGCTCGCTGGC 62.390 66.667 0.00 0.00 0.00 4.85
156 157 3.726517 CCCAACAACGCTCGCTGG 61.727 66.667 0.00 0.00 0.00 4.85
157 158 4.389576 GCCCAACAACGCTCGCTG 62.390 66.667 0.00 0.00 0.00 5.18
160 161 3.726517 CAGGCCCAACAACGCTCG 61.727 66.667 0.00 0.00 0.00 5.03
161 162 2.281484 TCAGGCCCAACAACGCTC 60.281 61.111 0.00 0.00 0.00 5.03
162 163 2.594592 GTCAGGCCCAACAACGCT 60.595 61.111 0.00 0.00 0.00 5.07
163 164 3.670377 GGTCAGGCCCAACAACGC 61.670 66.667 0.00 0.00 0.00 4.84
164 165 2.203280 TGGTCAGGCCCAACAACG 60.203 61.111 0.00 0.00 36.04 4.10
165 166 1.903404 CCTGGTCAGGCCCAACAAC 60.903 63.158 0.00 0.00 42.44 3.32
166 167 2.520458 CCTGGTCAGGCCCAACAA 59.480 61.111 0.00 0.00 42.44 2.83
175 176 3.114616 CGTCGCTTGCCTGGTCAG 61.115 66.667 0.00 0.00 0.00 3.51
206 207 3.879351 CTTTGCAGTGGCGGCGAAC 62.879 63.158 12.98 8.25 45.35 3.95
207 208 3.659092 CTTTGCAGTGGCGGCGAA 61.659 61.111 12.98 0.00 45.35 4.70
210 211 3.741476 CTCCTTTGCAGTGGCGGC 61.741 66.667 0.00 0.00 45.35 6.53
211 212 0.962356 ATTCTCCTTTGCAGTGGCGG 60.962 55.000 2.55 0.00 45.35 6.13
212 213 0.169672 CATTCTCCTTTGCAGTGGCG 59.830 55.000 2.55 0.00 45.35 5.69
213 214 0.108945 GCATTCTCCTTTGCAGTGGC 60.109 55.000 2.55 0.00 38.72 5.01
214 215 0.529378 GGCATTCTCCTTTGCAGTGG 59.471 55.000 0.00 1.10 40.66 4.00
215 216 1.068055 GTGGCATTCTCCTTTGCAGTG 60.068 52.381 0.00 0.00 40.66 3.66
216 217 1.251251 GTGGCATTCTCCTTTGCAGT 58.749 50.000 0.00 0.00 40.66 4.40
217 218 0.529378 GGTGGCATTCTCCTTTGCAG 59.471 55.000 0.00 0.00 40.66 4.41
218 219 1.243342 CGGTGGCATTCTCCTTTGCA 61.243 55.000 0.00 0.00 40.66 4.08
219 220 1.508088 CGGTGGCATTCTCCTTTGC 59.492 57.895 0.00 0.00 38.14 3.68
220 221 1.243342 TGCGGTGGCATTCTCCTTTG 61.243 55.000 0.00 0.00 46.21 2.77
221 222 1.074775 TGCGGTGGCATTCTCCTTT 59.925 52.632 0.00 0.00 46.21 3.11
252 253 2.496817 CGAGGAAGAGAAGGCCGG 59.503 66.667 0.00 0.00 0.00 6.13
281 282 1.920734 TTGCGCTGTGGGATGGGTAT 61.921 55.000 9.73 0.00 0.00 2.73
308 311 1.474879 GGAACAGAACGAGAGAGAGGG 59.525 57.143 0.00 0.00 0.00 4.30
456 461 2.758737 CTCCTCCCTTACGGCGGT 60.759 66.667 13.24 1.39 0.00 5.68
550 576 1.282875 GCTCACGTTGAGGTTTGGC 59.717 57.895 14.19 0.09 44.43 4.52
572 598 4.397417 GCAGAACATAGTGAAGAAGGCAAT 59.603 41.667 0.00 0.00 0.00 3.56
584 610 5.104941 TGCTAACTACCATGCAGAACATAGT 60.105 40.000 0.00 0.00 36.64 2.12
611 638 5.095809 ACAGTACAACCTATAGGACCCAAA 58.904 41.667 26.01 2.77 38.94 3.28
661 688 8.194104 ACAGCTAACAAAACATTTACACATTCA 58.806 29.630 0.00 0.00 0.00 2.57
682 709 6.901081 TCACACATATAGCACTATACAGCT 57.099 37.500 0.00 0.00 44.55 4.24
688 715 6.018751 CGTTGCTTTCACACATATAGCACTAT 60.019 38.462 0.00 0.00 41.15 2.12
711 738 2.683968 CAACCTAGTGCACACATACGT 58.316 47.619 21.04 2.93 0.00 3.57
737 764 7.273381 AGCAGTACGAATAAAAATTGCACATTC 59.727 33.333 0.00 0.00 33.00 2.67
756 783 5.755375 ACACATATAGCACATTCAGCAGTAC 59.245 40.000 0.00 0.00 0.00 2.73
759 786 4.812626 TCACACATATAGCACATTCAGCAG 59.187 41.667 0.00 0.00 0.00 4.24
760 787 4.768583 TCACACATATAGCACATTCAGCA 58.231 39.130 0.00 0.00 0.00 4.41
761 788 5.739752 TTCACACATATAGCACATTCAGC 57.260 39.130 0.00 0.00 0.00 4.26
790 828 7.517321 CCACCAAAATTTTTGCACACATATAC 58.483 34.615 15.02 0.00 0.00 1.47
807 845 1.697284 TGCACACATAGCCACCAAAA 58.303 45.000 0.00 0.00 0.00 2.44
818 856 2.172679 TGGCAGAATTGATGCACACAT 58.827 42.857 12.84 0.00 45.68 3.21
822 860 2.094390 ACACATGGCAGAATTGATGCAC 60.094 45.455 12.84 4.82 45.68 4.57
823 861 2.094442 CACACATGGCAGAATTGATGCA 60.094 45.455 12.84 0.00 45.68 3.96
824 862 2.094390 ACACACATGGCAGAATTGATGC 60.094 45.455 0.00 4.04 43.09 3.91
825 863 3.861276 ACACACATGGCAGAATTGATG 57.139 42.857 0.00 0.00 0.00 3.07
826 864 4.592942 ACTACACACATGGCAGAATTGAT 58.407 39.130 0.00 0.00 0.00 2.57
867 917 1.879796 CGGCTTCTGAACTTGGCTTCT 60.880 52.381 0.36 0.00 0.00 2.85
868 918 0.519077 CGGCTTCTGAACTTGGCTTC 59.481 55.000 0.36 0.00 0.00 3.86
869 919 0.108585 TCGGCTTCTGAACTTGGCTT 59.891 50.000 0.36 0.00 0.00 4.35
870 920 0.108585 TTCGGCTTCTGAACTTGGCT 59.891 50.000 0.36 0.00 0.00 4.75
871 921 1.131315 GATTCGGCTTCTGAACTTGGC 59.869 52.381 0.00 0.00 0.00 4.52
872 922 1.740025 GGATTCGGCTTCTGAACTTGG 59.260 52.381 0.00 0.00 0.00 3.61
873 923 1.394917 CGGATTCGGCTTCTGAACTTG 59.605 52.381 0.00 0.00 0.00 3.16
874 924 1.726853 CGGATTCGGCTTCTGAACTT 58.273 50.000 0.00 0.00 0.00 2.66
875 925 3.442996 CGGATTCGGCTTCTGAACT 57.557 52.632 0.00 0.00 0.00 3.01
886 936 4.119442 TCTCTAAAACTTCCCGGATTCG 57.881 45.455 0.73 0.00 0.00 3.34
887 937 5.351740 CACTTCTCTAAAACTTCCCGGATTC 59.648 44.000 0.73 0.00 0.00 2.52
888 938 5.246307 CACTTCTCTAAAACTTCCCGGATT 58.754 41.667 0.73 0.00 0.00 3.01
889 939 4.323562 CCACTTCTCTAAAACTTCCCGGAT 60.324 45.833 0.73 0.00 0.00 4.18
890 940 3.007614 CCACTTCTCTAAAACTTCCCGGA 59.992 47.826 0.73 0.00 0.00 5.14
891 941 3.007614 TCCACTTCTCTAAAACTTCCCGG 59.992 47.826 0.00 0.00 0.00 5.73
892 942 4.021368 TCTCCACTTCTCTAAAACTTCCCG 60.021 45.833 0.00 0.00 0.00 5.14
893 943 5.485209 TCTCCACTTCTCTAAAACTTCCC 57.515 43.478 0.00 0.00 0.00 3.97
894 944 6.702329 TGATCTCCACTTCTCTAAAACTTCC 58.298 40.000 0.00 0.00 0.00 3.46
895 945 7.607250 TCTGATCTCCACTTCTCTAAAACTTC 58.393 38.462 0.00 0.00 0.00 3.01
896 946 7.546250 TCTGATCTCCACTTCTCTAAAACTT 57.454 36.000 0.00 0.00 0.00 2.66
897 947 7.015682 TGTTCTGATCTCCACTTCTCTAAAACT 59.984 37.037 0.00 0.00 0.00 2.66
898 948 7.155328 TGTTCTGATCTCCACTTCTCTAAAAC 58.845 38.462 0.00 0.00 0.00 2.43
899 949 7.303182 TGTTCTGATCTCCACTTCTCTAAAA 57.697 36.000 0.00 0.00 0.00 1.52
900 950 6.071108 CCTGTTCTGATCTCCACTTCTCTAAA 60.071 42.308 0.00 0.00 0.00 1.85
901 951 5.420421 CCTGTTCTGATCTCCACTTCTCTAA 59.580 44.000 0.00 0.00 0.00 2.10
902 952 4.952957 CCTGTTCTGATCTCCACTTCTCTA 59.047 45.833 0.00 0.00 0.00 2.43
903 953 3.768757 CCTGTTCTGATCTCCACTTCTCT 59.231 47.826 0.00 0.00 0.00 3.10
904 954 3.678529 GCCTGTTCTGATCTCCACTTCTC 60.679 52.174 0.00 0.00 0.00 2.87
905 955 2.235898 GCCTGTTCTGATCTCCACTTCT 59.764 50.000 0.00 0.00 0.00 2.85
906 956 2.626840 GCCTGTTCTGATCTCCACTTC 58.373 52.381 0.00 0.00 0.00 3.01
907 957 1.280421 GGCCTGTTCTGATCTCCACTT 59.720 52.381 0.00 0.00 0.00 3.16
908 958 0.908198 GGCCTGTTCTGATCTCCACT 59.092 55.000 0.00 0.00 0.00 4.00
909 959 0.908198 AGGCCTGTTCTGATCTCCAC 59.092 55.000 3.11 0.00 0.00 4.02
910 960 1.661463 AAGGCCTGTTCTGATCTCCA 58.339 50.000 5.69 0.00 0.00 3.86
911 961 2.103941 CCTAAGGCCTGTTCTGATCTCC 59.896 54.545 5.69 0.00 0.00 3.71
912 962 2.484594 GCCTAAGGCCTGTTCTGATCTC 60.485 54.545 5.69 0.00 44.06 2.75
913 963 1.488393 GCCTAAGGCCTGTTCTGATCT 59.512 52.381 5.69 0.00 44.06 2.75
914 964 1.960417 GCCTAAGGCCTGTTCTGATC 58.040 55.000 5.69 0.00 44.06 2.92
926 976 1.480137 CAGGACTCAGAGTGCCTAAGG 59.520 57.143 17.95 4.92 37.25 2.69
927 977 2.165437 GTCAGGACTCAGAGTGCCTAAG 59.835 54.545 17.95 6.75 37.25 2.18
928 978 2.171840 GTCAGGACTCAGAGTGCCTAA 58.828 52.381 17.95 3.45 37.25 2.69
929 979 1.356059 AGTCAGGACTCAGAGTGCCTA 59.644 52.381 17.95 4.27 37.25 3.93
930 980 0.114168 AGTCAGGACTCAGAGTGCCT 59.886 55.000 17.95 15.22 37.25 4.75
931 981 2.664825 AGTCAGGACTCAGAGTGCC 58.335 57.895 17.95 13.36 37.25 5.01
940 990 0.768221 TTGGCAAGGGAGTCAGGACT 60.768 55.000 0.70 0.70 45.84 3.85
941 991 0.606673 GTTGGCAAGGGAGTCAGGAC 60.607 60.000 0.00 0.00 0.00 3.85
942 992 1.761174 GTTGGCAAGGGAGTCAGGA 59.239 57.895 0.00 0.00 0.00 3.86
943 993 1.303643 GGTTGGCAAGGGAGTCAGG 60.304 63.158 0.00 0.00 0.00 3.86
944 994 0.607489 CAGGTTGGCAAGGGAGTCAG 60.607 60.000 0.00 0.00 0.00 3.51
945 995 1.059584 TCAGGTTGGCAAGGGAGTCA 61.060 55.000 0.00 0.00 0.00 3.41
946 996 0.322008 CTCAGGTTGGCAAGGGAGTC 60.322 60.000 0.00 0.00 0.00 3.36
947 997 1.763770 CTCAGGTTGGCAAGGGAGT 59.236 57.895 0.00 0.00 0.00 3.85
948 998 1.676967 GCTCAGGTTGGCAAGGGAG 60.677 63.158 14.86 14.86 0.00 4.30
949 999 2.436109 GCTCAGGTTGGCAAGGGA 59.564 61.111 0.00 0.00 0.00 4.20
950 1000 3.058160 CGCTCAGGTTGGCAAGGG 61.058 66.667 0.00 0.00 0.00 3.95
951 1001 3.741476 GCGCTCAGGTTGGCAAGG 61.741 66.667 0.00 0.00 0.00 3.61
952 1002 2.670934 AGCGCTCAGGTTGGCAAG 60.671 61.111 2.64 0.00 0.00 4.01
953 1003 2.979676 CAGCGCTCAGGTTGGCAA 60.980 61.111 7.13 0.00 0.00 4.52
957 1007 2.979676 TTGGCAGCGCTCAGGTTG 60.980 61.111 7.13 0.00 0.00 3.77
958 1008 2.980233 GTTGGCAGCGCTCAGGTT 60.980 61.111 7.13 0.00 0.00 3.50
959 1009 2.184020 TATGTTGGCAGCGCTCAGGT 62.184 55.000 7.13 0.00 0.00 4.00
960 1010 0.816825 ATATGTTGGCAGCGCTCAGG 60.817 55.000 7.13 0.00 0.00 3.86
961 1011 1.019673 AATATGTTGGCAGCGCTCAG 58.980 50.000 7.13 0.00 0.00 3.35
962 1012 2.323968 TAATATGTTGGCAGCGCTCA 57.676 45.000 7.13 1.49 0.00 4.26
963 1013 2.603173 GCTTAATATGTTGGCAGCGCTC 60.603 50.000 7.13 2.01 0.00 5.03
964 1014 1.334869 GCTTAATATGTTGGCAGCGCT 59.665 47.619 2.64 2.64 0.00 5.92
965 1015 1.600413 GGCTTAATATGTTGGCAGCGC 60.600 52.381 0.00 0.00 0.00 5.92
966 1016 1.334059 CGGCTTAATATGTTGGCAGCG 60.334 52.381 0.00 0.00 0.00 5.18
967 1017 1.676006 ACGGCTTAATATGTTGGCAGC 59.324 47.619 0.00 0.00 0.00 5.25
968 1018 2.541588 GCACGGCTTAATATGTTGGCAG 60.542 50.000 0.00 3.57 0.00 4.85
969 1019 1.403679 GCACGGCTTAATATGTTGGCA 59.596 47.619 0.00 0.00 0.00 4.92
970 1020 1.403679 TGCACGGCTTAATATGTTGGC 59.596 47.619 0.00 0.00 0.00 4.52
971 1021 2.421775 TGTGCACGGCTTAATATGTTGG 59.578 45.455 13.13 0.00 0.00 3.77
972 1022 3.126858 ACTGTGCACGGCTTAATATGTTG 59.873 43.478 25.67 0.00 0.00 3.33
973 1023 3.343617 ACTGTGCACGGCTTAATATGTT 58.656 40.909 25.67 0.00 0.00 2.71
974 1024 2.985896 ACTGTGCACGGCTTAATATGT 58.014 42.857 25.67 0.00 0.00 2.29
975 1025 4.355543 AAACTGTGCACGGCTTAATATG 57.644 40.909 25.67 1.30 0.00 1.78
976 1026 4.436852 CGAAAACTGTGCACGGCTTAATAT 60.437 41.667 25.67 4.47 0.00 1.28
977 1027 3.120477 CGAAAACTGTGCACGGCTTAATA 60.120 43.478 25.67 0.00 0.00 0.98
978 1028 2.350388 CGAAAACTGTGCACGGCTTAAT 60.350 45.455 25.67 5.63 0.00 1.40
979 1029 1.003331 CGAAAACTGTGCACGGCTTAA 60.003 47.619 25.67 0.00 0.00 1.85
980 1030 0.584396 CGAAAACTGTGCACGGCTTA 59.416 50.000 25.67 0.00 0.00 3.09
981 1031 1.092921 TCGAAAACTGTGCACGGCTT 61.093 50.000 25.67 17.15 0.00 4.35
982 1032 0.884704 ATCGAAAACTGTGCACGGCT 60.885 50.000 25.67 11.16 0.00 5.52
983 1033 0.725784 CATCGAAAACTGTGCACGGC 60.726 55.000 25.67 8.23 0.00 5.68
984 1034 0.110238 CCATCGAAAACTGTGCACGG 60.110 55.000 24.22 24.22 0.00 4.94
985 1035 0.725784 GCCATCGAAAACTGTGCACG 60.726 55.000 13.13 9.67 0.00 5.34
986 1036 0.310543 TGCCATCGAAAACTGTGCAC 59.689 50.000 10.75 10.75 0.00 4.57
987 1037 0.310543 GTGCCATCGAAAACTGTGCA 59.689 50.000 0.00 0.00 0.00 4.57
988 1038 0.593128 AGTGCCATCGAAAACTGTGC 59.407 50.000 0.00 0.00 0.00 4.57
989 1039 1.136252 CGAGTGCCATCGAAAACTGTG 60.136 52.381 1.66 0.00 45.56 3.66
990 1040 1.148310 CGAGTGCCATCGAAAACTGT 58.852 50.000 1.66 0.00 45.56 3.55
991 1041 0.179215 GCGAGTGCCATCGAAAACTG 60.179 55.000 11.43 0.00 45.56 3.16
992 1042 0.602638 TGCGAGTGCCATCGAAAACT 60.603 50.000 11.43 0.00 45.56 2.66
993 1043 0.452784 GTGCGAGTGCCATCGAAAAC 60.453 55.000 11.43 3.16 45.56 2.43
994 1044 1.573829 GGTGCGAGTGCCATCGAAAA 61.574 55.000 11.43 0.00 45.56 2.29
995 1045 2.032634 GGTGCGAGTGCCATCGAAA 61.033 57.895 11.43 0.00 45.56 3.46
996 1046 2.434185 GGTGCGAGTGCCATCGAA 60.434 61.111 11.43 0.00 45.56 3.71
1011 1061 4.250305 GTGGCCAGTGGTCGTGGT 62.250 66.667 5.11 0.00 37.40 4.16
1102 1152 7.258587 ACATGAATGTCGAGAACCAGAGGTT 62.259 44.000 0.00 0.16 42.45 3.50
1119 1169 9.486123 AGAGGTGATATAGTAGCATACATGAAT 57.514 33.333 0.00 0.00 46.26 2.57
1138 1188 2.317371 AGAAGAAGCCAGAGAGGTGA 57.683 50.000 0.00 0.00 40.61 4.02
1186 1241 1.562942 AGCCTTGAGGAATCTGCATGA 59.437 47.619 0.00 0.00 37.39 3.07
1233 1288 3.514362 TAGATCAGTCGCGCCGCA 61.514 61.111 10.75 0.00 0.00 5.69
1299 1354 0.178767 CGACAAGCCCCATCATCTCA 59.821 55.000 0.00 0.00 0.00 3.27
1300 1355 1.162800 GCGACAAGCCCCATCATCTC 61.163 60.000 0.00 0.00 40.81 2.75
1344 1399 1.532505 CGGCGAGCATGAAAAAGGATG 60.533 52.381 0.00 0.00 0.00 3.51
1347 1402 1.137404 CCGGCGAGCATGAAAAAGG 59.863 57.895 9.30 0.00 0.00 3.11
1350 1405 2.359850 AGCCGGCGAGCATGAAAA 60.360 55.556 23.20 0.00 34.23 2.29
1369 1424 2.027192 AGGTTGACAGATATGGTTGCGT 60.027 45.455 0.00 0.00 0.00 5.24
1386 1441 1.225855 CATGCACACACACGTAGGTT 58.774 50.000 0.00 0.00 0.00 3.50
1423 1478 1.743772 GCAGCGAAAAGGAGGAGCATA 60.744 52.381 0.00 0.00 0.00 3.14
1538 1593 2.202837 CAGGGTAAGTACGCCGGC 60.203 66.667 19.07 19.07 39.67 6.13
1553 1608 3.741476 GAAAGCCCACGCCAGCAG 61.741 66.667 0.00 0.00 34.57 4.24
1578 1633 3.876198 GCATAACGCAGGCCACCG 61.876 66.667 5.01 9.83 41.79 4.94
1582 1637 3.272334 CGGAGCATAACGCAGGCC 61.272 66.667 0.00 0.00 46.13 5.19
1789 1851 0.664761 CGCATGGGCATGTTTCCTAG 59.335 55.000 0.00 0.00 40.80 3.02
1790 1852 0.034574 ACGCATGGGCATGTTTCCTA 60.035 50.000 10.10 0.00 40.80 2.94
1791 1853 0.899717 AACGCATGGGCATGTTTCCT 60.900 50.000 10.10 0.00 40.80 3.36
1792 1854 0.737019 CAACGCATGGGCATGTTTCC 60.737 55.000 10.10 0.00 40.80 3.13
1793 1855 1.353609 GCAACGCATGGGCATGTTTC 61.354 55.000 10.10 0.00 40.80 2.78
1794 1856 1.374505 GCAACGCATGGGCATGTTT 60.375 52.632 10.10 0.00 40.80 2.83
1795 1857 2.097201 TTGCAACGCATGGGCATGTT 62.097 50.000 10.10 0.00 38.76 2.71
1796 1858 2.572149 TTGCAACGCATGGGCATGT 61.572 52.632 10.10 0.00 38.76 3.21
1797 1859 2.095847 GTTGCAACGCATGGGCATG 61.096 57.895 14.90 10.43 38.76 4.06
1798 1860 2.262292 GTTGCAACGCATGGGCAT 59.738 55.556 14.90 0.00 38.76 4.40
1799 1861 4.340019 CGTTGCAACGCATGGGCA 62.340 61.111 35.89 0.00 46.06 5.36
1824 1886 0.461163 GGCGGCAACAACAGGTTTTT 60.461 50.000 3.07 0.00 37.72 1.94
1825 1887 1.142965 GGCGGCAACAACAGGTTTT 59.857 52.632 3.07 0.00 37.72 2.43
1826 1888 2.055042 TGGCGGCAACAACAGGTTT 61.055 52.632 10.22 0.00 37.72 3.27
1827 1889 2.441164 TGGCGGCAACAACAGGTT 60.441 55.556 10.22 0.00 41.47 3.50
1828 1890 3.216292 GTGGCGGCAACAACAGGT 61.216 61.111 15.50 0.00 0.00 4.00
1829 1891 3.977244 GGTGGCGGCAACAACAGG 61.977 66.667 23.78 0.00 0.00 4.00
1830 1892 4.326766 CGGTGGCGGCAACAACAG 62.327 66.667 27.71 6.53 0.00 3.16
1848 1910 3.245668 AAGTGACAGGCAGAGCGGG 62.246 63.158 0.00 0.00 0.00 6.13
1849 1911 1.739562 GAAGTGACAGGCAGAGCGG 60.740 63.158 0.00 0.00 0.00 5.52
1850 1912 2.091112 CGAAGTGACAGGCAGAGCG 61.091 63.158 0.00 0.00 0.00 5.03
1851 1913 1.739562 CCGAAGTGACAGGCAGAGC 60.740 63.158 0.00 0.00 0.00 4.09
1852 1914 4.586618 CCGAAGTGACAGGCAGAG 57.413 61.111 0.00 0.00 0.00 3.35
1857 1919 2.046892 CCTGGCCGAAGTGACAGG 60.047 66.667 0.00 0.00 43.87 4.00
1858 1920 2.743928 GCCTGGCCGAAGTGACAG 60.744 66.667 7.66 0.00 0.00 3.51
1859 1921 4.329545 GGCCTGGCCGAAGTGACA 62.330 66.667 24.16 0.00 39.62 3.58
1869 1931 2.046285 GTGTACCATGTGGCCTGGC 61.046 63.158 11.05 11.05 37.27 4.85
1870 1932 0.034186 ATGTGTACCATGTGGCCTGG 60.034 55.000 3.32 6.05 39.32 4.45
1871 1933 1.097232 CATGTGTACCATGTGGCCTG 58.903 55.000 3.32 0.00 44.96 4.85
1872 1934 3.575506 CATGTGTACCATGTGGCCT 57.424 52.632 3.32 0.00 44.96 5.19
1879 1941 1.451927 CCTGGCGCATGTGTACCAT 60.452 57.895 10.83 0.00 0.00 3.55
1880 1942 2.046411 CCTGGCGCATGTGTACCA 60.046 61.111 10.83 6.77 0.00 3.25
1881 1943 3.508840 GCCTGGCGCATGTGTACC 61.509 66.667 10.83 1.94 37.47 3.34
1882 1944 3.508840 GGCCTGGCGCATGTGTAC 61.509 66.667 13.40 2.20 40.31 2.90
1883 1945 4.794648 GGGCCTGGCGCATGTGTA 62.795 66.667 28.47 0.00 41.23 2.90
1897 1959 3.145551 CCAATGGCTCTGCTGGGC 61.146 66.667 6.96 6.96 0.00 5.36
1898 1960 3.145551 GCCAATGGCTCTGCTGGG 61.146 66.667 18.47 0.00 46.69 4.45
1908 1970 1.452108 GGGAGACGAAGGCCAATGG 60.452 63.158 5.01 0.00 0.00 3.16
1909 1971 0.462759 GAGGGAGACGAAGGCCAATG 60.463 60.000 5.01 0.00 0.00 2.82
1910 1972 0.909610 TGAGGGAGACGAAGGCCAAT 60.910 55.000 5.01 0.00 0.00 3.16
1911 1973 1.535444 TGAGGGAGACGAAGGCCAA 60.535 57.895 5.01 0.00 0.00 4.52
1912 1974 1.984570 CTGAGGGAGACGAAGGCCA 60.985 63.158 5.01 0.00 0.00 5.36
1926 1988 2.167487 GCTTTCTCTACTCCCACCTGAG 59.833 54.545 0.00 0.00 38.37 3.35
1929 1991 2.327325 TGCTTTCTCTACTCCCACCT 57.673 50.000 0.00 0.00 0.00 4.00
1943 2006 9.247861 ACAAGTTTATCCTTCTTCATATGCTTT 57.752 29.630 0.00 0.00 0.00 3.51
2083 2147 8.437742 GGAAGATTTGAAATGCACACAATTTAG 58.562 33.333 0.00 0.00 0.00 1.85
2085 2149 6.766944 TGGAAGATTTGAAATGCACACAATTT 59.233 30.769 0.00 0.00 0.00 1.82
2143 2207 9.672086 TTCAAAAATAAGTGAGTTTTACATCCG 57.328 29.630 0.00 0.00 33.70 4.18
2387 2454 4.705023 GCAAACAGGTAACAATGGGTCTAT 59.295 41.667 0.00 0.00 41.41 1.98
2397 2464 2.160721 TTTGGGGCAAACAGGTAACA 57.839 45.000 0.00 0.00 41.41 2.41
2521 2590 7.051696 AGGGGTCTGGGAGAATTTTTATTTA 57.948 36.000 0.00 0.00 0.00 1.40
2524 2593 4.079154 GGAGGGGTCTGGGAGAATTTTTAT 60.079 45.833 0.00 0.00 0.00 1.40
2525 2594 3.268595 GGAGGGGTCTGGGAGAATTTTTA 59.731 47.826 0.00 0.00 0.00 1.52
2526 2595 2.043115 GGAGGGGTCTGGGAGAATTTTT 59.957 50.000 0.00 0.00 0.00 1.94
2527 2596 1.641192 GGAGGGGTCTGGGAGAATTTT 59.359 52.381 0.00 0.00 0.00 1.82
2528 2597 1.203622 AGGAGGGGTCTGGGAGAATTT 60.204 52.381 0.00 0.00 0.00 1.82
2529 2598 0.423544 AGGAGGGGTCTGGGAGAATT 59.576 55.000 0.00 0.00 0.00 2.17
2530 2599 0.423544 AAGGAGGGGTCTGGGAGAAT 59.576 55.000 0.00 0.00 0.00 2.40
2547 2616 0.240411 GAGCTGCTGCCTGTGAAAAG 59.760 55.000 7.01 0.00 40.80 2.27
2571 2640 1.077716 GGGGGTCAATGTTAGCGCT 60.078 57.895 17.26 17.26 0.00 5.92
2597 2673 4.452733 GCTACGGCGCTCTGGGTT 62.453 66.667 6.90 0.00 0.00 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.