Multiple sequence alignment - TraesCS6B01G205600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G205600 chr6B 100.000 2147 0 0 1 2147 257576015 257578161 0.000000e+00 3965
1 TraesCS6B01G205600 chr6D 94.737 722 19 6 734 1437 144545308 144546028 0.000000e+00 1105
2 TraesCS6B01G205600 chr6D 92.318 729 40 5 1 726 144544547 144545262 0.000000e+00 1022
3 TraesCS6B01G205600 chr6D 94.955 337 6 5 1436 1771 144563563 144563889 3.160000e-143 518
4 TraesCS6B01G205600 chr6D 85.145 276 31 6 1498 1770 335361460 335361192 7.550000e-70 274
5 TraesCS6B01G205600 chr6A 87.155 724 21 16 734 1407 202339313 202338612 0.000000e+00 756
6 TraesCS6B01G205600 chr6A 94.848 427 16 4 1 422 202345511 202345086 0.000000e+00 662
7 TraesCS6B01G205600 chr6A 92.675 314 11 4 420 723 202339672 202339361 1.960000e-120 442
8 TraesCS6B01G205600 chr6A 85.955 356 22 13 1436 1770 202338532 202338184 2.620000e-94 355
9 TraesCS6B01G205600 chr6A 85.560 277 36 4 41 314 609589610 609589885 9.700000e-74 287
10 TraesCS6B01G205600 chr6A 85.185 270 28 8 1503 1770 474994851 474994592 1.260000e-67 267
11 TraesCS6B01G205600 chr6A 83.436 163 25 2 153 314 609588674 609588513 1.330000e-32 150
12 TraesCS6B01G205600 chr5D 93.889 360 20 1 1781 2138 524599087 524598728 1.870000e-150 542
13 TraesCS6B01G205600 chrUn 92.453 212 13 2 1928 2138 31917400 31917191 1.250000e-77 300
14 TraesCS6B01G205600 chr1B 85.560 277 36 4 41 314 264830072 264829797 9.700000e-74 287
15 TraesCS6B01G205600 chr1B 84.848 165 23 2 153 316 264830999 264831162 4.740000e-37 165
16 TraesCS6B01G205600 chr2A 83.333 276 39 3 41 314 767434784 767435054 4.580000e-62 248
17 TraesCS6B01G205600 chr7A 80.077 261 46 4 54 311 24445895 24446152 2.810000e-44 189
18 TraesCS6B01G205600 chr5A 79.468 263 49 4 55 315 679717801 679718060 4.710000e-42 182
19 TraesCS6B01G205600 chr1A 91.603 131 7 3 1 131 135711630 135711756 6.090000e-41 178
20 TraesCS6B01G205600 chr3D 77.407 270 50 8 48 313 329448874 329448612 1.330000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G205600 chr6B 257576015 257578161 2146 False 3965.000000 3965 100.0000 1 2147 1 chr6B.!!$F1 2146
1 TraesCS6B01G205600 chr6D 144544547 144546028 1481 False 1063.500000 1105 93.5275 1 1437 2 chr6D.!!$F2 1436
2 TraesCS6B01G205600 chr6A 202338184 202339672 1488 True 517.666667 756 88.5950 420 1770 3 chr6A.!!$R4 1350

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 145 0.029834 GTAGGCATGCCAAATCAGCG 59.97 55.0 37.18 0.0 38.92 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1789 1962 0.037697 ACGCACAGAAACGCATAGGA 60.038 50.0 0.0 0.0 0.0 2.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.598856 AAGGGGGAGAGAGGAGGAGG 61.599 65.000 0.00 0.00 0.00 4.30
111 113 0.543749 GGGTCCATCTTCCACCTCAG 59.456 60.000 0.00 0.00 0.00 3.35
120 122 4.142609 TCTTCCACCTCAGCATATTGTC 57.857 45.455 0.00 0.00 0.00 3.18
121 123 3.118261 TCTTCCACCTCAGCATATTGTCC 60.118 47.826 0.00 0.00 0.00 4.02
143 145 0.029834 GTAGGCATGCCAAATCAGCG 59.970 55.000 37.18 0.00 38.92 5.18
161 163 2.117206 TGACATGTGGGGCCAACC 59.883 61.111 9.01 0.00 39.11 3.77
181 183 3.877508 ACCTGTCAGTTTTGCTGTTAGAC 59.122 43.478 0.00 0.00 45.23 2.59
227 229 6.082338 GTGATTTGTTACTCACTTGATGCAG 58.918 40.000 0.00 0.00 38.94 4.41
293 295 4.504858 GAGTACCCTAGTCACAAATGTGG 58.495 47.826 13.22 0.00 45.65 4.17
297 299 2.224769 CCCTAGTCACAAATGTGGTGGT 60.225 50.000 13.22 0.00 45.65 4.16
301 303 4.385358 AGTCACAAATGTGGTGGTTTTC 57.615 40.909 13.22 0.00 45.65 2.29
359 361 9.393249 TGTTTGTTCGATTTATGAATTTCACTC 57.607 29.630 0.15 0.00 0.00 3.51
364 366 9.994432 GTTCGATTTATGAATTTCACTCAGAAT 57.006 29.630 0.15 0.00 35.83 2.40
374 376 9.559732 TGAATTTCACTCAGAATCAAAGTTCTA 57.440 29.630 0.00 0.00 36.33 2.10
408 410 2.949714 AAACTCAAATGCACGTCTCG 57.050 45.000 0.00 0.00 0.00 4.04
418 420 0.179108 GCACGTCTCGGCTATTTCCT 60.179 55.000 0.00 0.00 0.00 3.36
437 439 3.887110 TCCTATCGAATGAGTTTCCGCTA 59.113 43.478 0.00 0.00 0.00 4.26
477 479 0.893270 TCAAATGGACGCCCTGGTTG 60.893 55.000 0.00 0.00 0.00 3.77
480 482 3.605749 ATGGACGCCCTGGTTGTCG 62.606 63.158 8.80 2.44 33.45 4.35
484 486 4.657824 CGCCCTGGTTGTCGTCGT 62.658 66.667 0.00 0.00 0.00 4.34
485 487 2.737376 GCCCTGGTTGTCGTCGTC 60.737 66.667 0.00 0.00 0.00 4.20
518 520 5.011533 ACGGAAATTGGAAAATGAATGGTGA 59.988 36.000 0.00 0.00 0.00 4.02
521 523 7.927629 CGGAAATTGGAAAATGAATGGTGATAT 59.072 33.333 0.00 0.00 0.00 1.63
608 619 3.565307 TGAAAAGCAGAGTTTGACCCAT 58.435 40.909 0.00 0.00 0.00 4.00
649 661 1.028905 TTTCCTGCGGACAAAACCTG 58.971 50.000 0.00 0.00 0.00 4.00
726 738 6.330278 GCTCAAACAAATAGAAATGGGGTAC 58.670 40.000 0.00 0.00 0.00 3.34
727 739 6.152831 GCTCAAACAAATAGAAATGGGGTACT 59.847 38.462 0.00 0.00 0.00 2.73
728 740 7.338449 GCTCAAACAAATAGAAATGGGGTACTA 59.662 37.037 0.00 0.00 0.00 1.82
729 741 8.570068 TCAAACAAATAGAAATGGGGTACTAC 57.430 34.615 0.00 0.00 0.00 2.73
730 742 7.612633 TCAAACAAATAGAAATGGGGTACTACC 59.387 37.037 0.00 0.00 37.60 3.18
731 743 5.677567 ACAAATAGAAATGGGGTACTACCG 58.322 41.667 0.00 0.00 39.83 4.02
737 787 2.440980 GGGGTACTACCGTCGGCT 60.441 66.667 12.28 1.07 39.83 5.52
933 998 2.159226 AGAATACTGTGGCTAGTGCGAC 60.159 50.000 5.44 0.00 46.07 5.19
940 1005 1.032657 TGGCTAGTGCGACCTCTCTC 61.033 60.000 0.00 0.00 40.82 3.20
972 1037 2.955660 CTCTAGGATCGGCTTTCTGTCT 59.044 50.000 0.00 0.00 0.00 3.41
1361 1461 6.732896 TTTGCAATAAAACCCTGACCTTAA 57.267 33.333 0.00 0.00 0.00 1.85
1380 1480 5.307976 CCTTAATATCAGATGGGACCAGTGA 59.692 44.000 8.22 8.22 0.00 3.41
1414 1537 2.729028 ATTTATCACGGGTGGGAAGG 57.271 50.000 0.00 0.00 0.00 3.46
1481 1633 3.576550 TGAAATCCTTGTTGTTAAGGGGC 59.423 43.478 4.84 0.00 45.86 5.80
1483 1635 0.854218 TCCTTGTTGTTAAGGGGCCA 59.146 50.000 4.39 0.00 45.86 5.36
1485 1637 1.256812 CTTGTTGTTAAGGGGCCAGG 58.743 55.000 4.39 0.00 0.00 4.45
1486 1638 0.830023 TTGTTGTTAAGGGGCCAGGC 60.830 55.000 4.39 1.26 0.00 4.85
1537 1709 5.110940 TCAAACGCCCTTAACATAAACAC 57.889 39.130 0.00 0.00 0.00 3.32
1539 1711 4.492791 AACGCCCTTAACATAAACACAC 57.507 40.909 0.00 0.00 0.00 3.82
1541 1713 3.251487 ACGCCCTTAACATAAACACACAC 59.749 43.478 0.00 0.00 0.00 3.82
1551 1723 9.862371 TTAACATAAACACACACAAAATGAACT 57.138 25.926 0.00 0.00 0.00 3.01
1552 1724 7.754069 ACATAAACACACACAAAATGAACTG 57.246 32.000 0.00 0.00 0.00 3.16
1558 1730 9.598517 AAACACACACAAAATGAACTGAATATT 57.401 25.926 0.00 0.00 0.00 1.28
1646 1819 3.426859 CGAGAGCACAGAAGTAAAGTGTG 59.573 47.826 0.00 0.00 43.70 3.82
1667 1840 9.997482 AGTGTGTTAGTATTTAGTTGTTTGTTG 57.003 29.630 0.00 0.00 0.00 3.33
1668 1841 9.777575 GTGTGTTAGTATTTAGTTGTTTGTTGT 57.222 29.630 0.00 0.00 0.00 3.32
1671 1844 8.459635 TGTTAGTATTTAGTTGTTTGTTGTGCA 58.540 29.630 0.00 0.00 0.00 4.57
1681 1854 3.750130 TGTTTGTTGTGCAAAGCATTGTT 59.250 34.783 3.31 0.00 46.50 2.83
1763 1936 8.977267 TCATGTTGTTATCATCCATGTTGATA 57.023 30.769 10.14 10.14 36.05 2.15
1781 1954 4.717877 TGATATCAACATTAGTGGCCAGG 58.282 43.478 5.11 0.00 0.00 4.45
1782 1955 2.442236 ATCAACATTAGTGGCCAGGG 57.558 50.000 5.11 0.00 0.00 4.45
1783 1956 0.323360 TCAACATTAGTGGCCAGGGC 60.323 55.000 5.11 5.91 41.06 5.19
1784 1957 1.378514 AACATTAGTGGCCAGGGCG 60.379 57.895 5.11 0.00 43.06 6.13
1785 1958 3.211963 CATTAGTGGCCAGGGCGC 61.212 66.667 18.99 18.99 43.06 6.53
1786 1959 4.856801 ATTAGTGGCCAGGGCGCG 62.857 66.667 20.30 0.00 43.41 6.86
1795 1968 4.976925 CAGGGCGCGCCTCCTATG 62.977 72.222 45.23 30.60 36.10 2.23
1802 1975 4.835927 CGCCTCCTATGCGTTTCT 57.164 55.556 0.00 0.00 46.59 2.52
1803 1976 2.301505 CGCCTCCTATGCGTTTCTG 58.698 57.895 0.00 0.00 46.59 3.02
1804 1977 0.460284 CGCCTCCTATGCGTTTCTGT 60.460 55.000 0.00 0.00 46.59 3.41
1805 1978 1.009829 GCCTCCTATGCGTTTCTGTG 58.990 55.000 0.00 0.00 0.00 3.66
1806 1979 1.009829 CCTCCTATGCGTTTCTGTGC 58.990 55.000 0.00 0.00 0.00 4.57
1807 1980 0.647410 CTCCTATGCGTTTCTGTGCG 59.353 55.000 0.00 0.00 0.00 5.34
1808 1981 0.037697 TCCTATGCGTTTCTGTGCGT 60.038 50.000 0.00 0.00 0.00 5.24
1809 1982 1.202817 TCCTATGCGTTTCTGTGCGTA 59.797 47.619 0.00 0.00 0.00 4.42
1810 1983 1.323534 CCTATGCGTTTCTGTGCGTAC 59.676 52.381 0.00 0.00 0.00 3.67
1811 1984 1.323534 CTATGCGTTTCTGTGCGTACC 59.676 52.381 0.00 0.00 0.00 3.34
1812 1985 0.601576 ATGCGTTTCTGTGCGTACCA 60.602 50.000 0.00 0.00 0.00 3.25
1813 1986 0.810426 TGCGTTTCTGTGCGTACCAA 60.810 50.000 0.00 0.00 0.00 3.67
1814 1987 0.515564 GCGTTTCTGTGCGTACCAAT 59.484 50.000 0.00 0.00 0.00 3.16
1815 1988 1.463528 GCGTTTCTGTGCGTACCAATC 60.464 52.381 0.00 0.00 0.00 2.67
1816 1989 2.066262 CGTTTCTGTGCGTACCAATCT 58.934 47.619 0.00 0.00 0.00 2.40
1817 1990 3.247442 CGTTTCTGTGCGTACCAATCTA 58.753 45.455 0.00 0.00 0.00 1.98
1818 1991 3.303495 CGTTTCTGTGCGTACCAATCTAG 59.697 47.826 0.00 0.00 0.00 2.43
1819 1992 2.579207 TCTGTGCGTACCAATCTAGC 57.421 50.000 0.00 0.00 0.00 3.42
1820 1993 2.100197 TCTGTGCGTACCAATCTAGCT 58.900 47.619 0.00 0.00 0.00 3.32
1821 1994 2.496070 TCTGTGCGTACCAATCTAGCTT 59.504 45.455 0.00 0.00 0.00 3.74
1822 1995 3.056107 TCTGTGCGTACCAATCTAGCTTT 60.056 43.478 0.00 0.00 0.00 3.51
1823 1996 3.670625 TGTGCGTACCAATCTAGCTTTT 58.329 40.909 0.00 0.00 0.00 2.27
1824 1997 3.435327 TGTGCGTACCAATCTAGCTTTTG 59.565 43.478 0.00 0.00 0.00 2.44
1825 1998 3.435671 GTGCGTACCAATCTAGCTTTTGT 59.564 43.478 0.00 0.00 0.00 2.83
1826 1999 4.628333 GTGCGTACCAATCTAGCTTTTGTA 59.372 41.667 0.00 0.00 0.00 2.41
1827 2000 4.628333 TGCGTACCAATCTAGCTTTTGTAC 59.372 41.667 0.00 0.00 0.00 2.90
1828 2001 4.868734 GCGTACCAATCTAGCTTTTGTACT 59.131 41.667 0.00 0.00 0.00 2.73
1829 2002 5.350640 GCGTACCAATCTAGCTTTTGTACTT 59.649 40.000 0.00 0.00 0.00 2.24
1830 2003 6.672357 GCGTACCAATCTAGCTTTTGTACTTG 60.672 42.308 0.00 0.00 0.00 3.16
1831 2004 6.367969 CGTACCAATCTAGCTTTTGTACTTGT 59.632 38.462 0.00 0.00 0.00 3.16
1832 2005 6.560253 ACCAATCTAGCTTTTGTACTTGTG 57.440 37.500 0.00 0.00 0.00 3.33
1833 2006 6.296026 ACCAATCTAGCTTTTGTACTTGTGA 58.704 36.000 0.00 0.00 0.00 3.58
1834 2007 6.770785 ACCAATCTAGCTTTTGTACTTGTGAA 59.229 34.615 0.00 0.00 0.00 3.18
1835 2008 7.284489 ACCAATCTAGCTTTTGTACTTGTGAAA 59.716 33.333 0.00 0.00 0.00 2.69
1836 2009 7.805071 CCAATCTAGCTTTTGTACTTGTGAAAG 59.195 37.037 0.00 0.00 33.41 2.62
1837 2010 8.345565 CAATCTAGCTTTTGTACTTGTGAAAGT 58.654 33.333 0.00 0.00 36.82 2.66
1838 2011 7.246674 TCTAGCTTTTGTACTTGTGAAAGTG 57.753 36.000 0.00 0.00 34.37 3.16
1839 2012 4.672409 AGCTTTTGTACTTGTGAAAGTGC 58.328 39.130 1.42 0.90 36.19 4.40
1840 2013 4.157656 AGCTTTTGTACTTGTGAAAGTGCA 59.842 37.500 5.44 5.44 42.27 4.57
1841 2014 5.043248 GCTTTTGTACTTGTGAAAGTGCAT 58.957 37.500 9.65 0.00 43.16 3.96
1842 2015 5.051508 GCTTTTGTACTTGTGAAAGTGCATG 60.052 40.000 9.65 0.00 43.16 4.06
1843 2016 5.574891 TTTGTACTTGTGAAAGTGCATGT 57.425 34.783 9.65 0.00 43.16 3.21
1844 2017 5.574891 TTGTACTTGTGAAAGTGCATGTT 57.425 34.783 9.65 0.00 43.16 2.71
1845 2018 5.574891 TGTACTTGTGAAAGTGCATGTTT 57.425 34.783 5.44 0.00 39.80 2.83
1846 2019 5.339177 TGTACTTGTGAAAGTGCATGTTTG 58.661 37.500 5.44 0.00 39.80 2.93
1847 2020 4.717233 ACTTGTGAAAGTGCATGTTTGA 57.283 36.364 1.98 0.00 0.00 2.69
1848 2021 5.266733 ACTTGTGAAAGTGCATGTTTGAT 57.733 34.783 1.98 0.00 0.00 2.57
1849 2022 5.663456 ACTTGTGAAAGTGCATGTTTGATT 58.337 33.333 1.98 0.00 0.00 2.57
1850 2023 5.750067 ACTTGTGAAAGTGCATGTTTGATTC 59.250 36.000 1.98 0.00 0.00 2.52
1851 2024 5.259832 TGTGAAAGTGCATGTTTGATTCA 57.740 34.783 1.98 0.00 0.00 2.57
1852 2025 5.283294 TGTGAAAGTGCATGTTTGATTCAG 58.717 37.500 1.98 0.00 0.00 3.02
1853 2026 5.067544 TGTGAAAGTGCATGTTTGATTCAGA 59.932 36.000 1.98 0.00 0.00 3.27
1854 2027 5.628193 GTGAAAGTGCATGTTTGATTCAGAG 59.372 40.000 1.98 0.00 0.00 3.35
1855 2028 4.778534 AAGTGCATGTTTGATTCAGAGG 57.221 40.909 0.00 0.00 0.00 3.69
1856 2029 4.025040 AGTGCATGTTTGATTCAGAGGA 57.975 40.909 0.00 0.00 0.00 3.71
1857 2030 4.008330 AGTGCATGTTTGATTCAGAGGAG 58.992 43.478 0.00 0.00 0.00 3.69
1858 2031 2.751259 TGCATGTTTGATTCAGAGGAGC 59.249 45.455 0.00 0.00 0.00 4.70
1859 2032 2.751259 GCATGTTTGATTCAGAGGAGCA 59.249 45.455 0.00 0.00 0.00 4.26
1860 2033 3.427233 GCATGTTTGATTCAGAGGAGCAC 60.427 47.826 0.00 0.00 0.00 4.40
1861 2034 3.490439 TGTTTGATTCAGAGGAGCACA 57.510 42.857 0.00 0.00 0.00 4.57
1862 2035 3.405831 TGTTTGATTCAGAGGAGCACAG 58.594 45.455 0.00 0.00 0.00 3.66
1863 2036 3.181451 TGTTTGATTCAGAGGAGCACAGT 60.181 43.478 0.00 0.00 0.00 3.55
1864 2037 3.777106 TTGATTCAGAGGAGCACAGTT 57.223 42.857 0.00 0.00 0.00 3.16
1865 2038 3.049708 TGATTCAGAGGAGCACAGTTG 57.950 47.619 0.00 0.00 0.00 3.16
1866 2039 2.369860 TGATTCAGAGGAGCACAGTTGT 59.630 45.455 0.00 0.00 0.00 3.32
1867 2040 3.181451 TGATTCAGAGGAGCACAGTTGTT 60.181 43.478 0.00 0.00 0.00 2.83
1868 2041 4.040339 TGATTCAGAGGAGCACAGTTGTTA 59.960 41.667 0.00 0.00 0.00 2.41
1869 2042 4.415881 TTCAGAGGAGCACAGTTGTTAA 57.584 40.909 0.00 0.00 0.00 2.01
1870 2043 4.415881 TCAGAGGAGCACAGTTGTTAAA 57.584 40.909 0.00 0.00 0.00 1.52
1871 2044 4.776349 TCAGAGGAGCACAGTTGTTAAAA 58.224 39.130 0.00 0.00 0.00 1.52
1872 2045 5.376625 TCAGAGGAGCACAGTTGTTAAAAT 58.623 37.500 0.00 0.00 0.00 1.82
1873 2046 6.530120 TCAGAGGAGCACAGTTGTTAAAATA 58.470 36.000 0.00 0.00 0.00 1.40
1874 2047 7.168219 TCAGAGGAGCACAGTTGTTAAAATAT 58.832 34.615 0.00 0.00 0.00 1.28
1875 2048 7.119699 TCAGAGGAGCACAGTTGTTAAAATATG 59.880 37.037 0.00 0.00 0.00 1.78
1876 2049 7.119699 CAGAGGAGCACAGTTGTTAAAATATGA 59.880 37.037 0.00 0.00 0.00 2.15
1877 2050 7.665559 AGAGGAGCACAGTTGTTAAAATATGAA 59.334 33.333 0.00 0.00 0.00 2.57
1878 2051 8.353423 AGGAGCACAGTTGTTAAAATATGAAT 57.647 30.769 0.00 0.00 0.00 2.57
1879 2052 8.246180 AGGAGCACAGTTGTTAAAATATGAATG 58.754 33.333 0.00 0.00 0.00 2.67
1880 2053 7.009540 GGAGCACAGTTGTTAAAATATGAATGC 59.990 37.037 0.00 0.00 0.00 3.56
1881 2054 7.605449 AGCACAGTTGTTAAAATATGAATGCT 58.395 30.769 0.00 0.00 32.58 3.79
1882 2055 7.543172 AGCACAGTTGTTAAAATATGAATGCTG 59.457 33.333 0.00 0.00 35.93 4.41
1883 2056 7.329226 GCACAGTTGTTAAAATATGAATGCTGT 59.671 33.333 0.00 0.00 33.32 4.40
1884 2057 9.195411 CACAGTTGTTAAAATATGAATGCTGTT 57.805 29.630 0.00 0.00 31.08 3.16
1885 2058 9.410556 ACAGTTGTTAAAATATGAATGCTGTTC 57.589 29.630 0.00 0.00 0.00 3.18
1886 2059 9.409312 CAGTTGTTAAAATATGAATGCTGTTCA 57.591 29.630 7.41 7.41 0.00 3.18
1887 2060 9.630098 AGTTGTTAAAATATGAATGCTGTTCAG 57.370 29.630 10.15 0.00 0.00 3.02
1888 2061 9.624697 GTTGTTAAAATATGAATGCTGTTCAGA 57.375 29.630 3.84 6.70 0.00 3.27
1889 2062 9.624697 TTGTTAAAATATGAATGCTGTTCAGAC 57.375 29.630 3.84 0.00 0.00 3.51
1890 2063 7.962373 TGTTAAAATATGAATGCTGTTCAGACG 59.038 33.333 3.84 0.00 0.00 4.18
1891 2064 6.741992 AAAATATGAATGCTGTTCAGACGA 57.258 33.333 3.84 0.00 0.00 4.20
1892 2065 5.725110 AATATGAATGCTGTTCAGACGAC 57.275 39.130 3.84 0.00 0.00 4.34
1893 2066 2.524569 TGAATGCTGTTCAGACGACA 57.475 45.000 3.84 0.00 0.00 4.35
1894 2067 3.044235 TGAATGCTGTTCAGACGACAT 57.956 42.857 3.84 0.00 0.00 3.06
1895 2068 2.738314 TGAATGCTGTTCAGACGACATG 59.262 45.455 3.84 0.00 0.00 3.21
1896 2069 1.081892 ATGCTGTTCAGACGACATGC 58.918 50.000 3.84 0.00 0.00 4.06
1898 2071 1.959899 GCTGTTCAGACGACATGCGG 61.960 60.000 12.85 0.00 46.49 5.69
1899 2072 0.388520 CTGTTCAGACGACATGCGGA 60.389 55.000 12.85 0.00 46.49 5.54
1900 2073 0.246360 TGTTCAGACGACATGCGGAT 59.754 50.000 12.85 0.00 46.49 4.18
1901 2074 1.474879 TGTTCAGACGACATGCGGATA 59.525 47.619 12.85 0.00 46.49 2.59
1902 2075 2.094442 TGTTCAGACGACATGCGGATAA 60.094 45.455 12.85 1.46 46.49 1.75
1903 2076 3.123804 GTTCAGACGACATGCGGATAAT 58.876 45.455 12.85 0.00 46.49 1.28
1904 2077 3.452755 TCAGACGACATGCGGATAATT 57.547 42.857 12.85 0.00 46.49 1.40
1905 2078 3.123050 TCAGACGACATGCGGATAATTG 58.877 45.455 12.85 0.00 46.49 2.32
1906 2079 2.221749 CAGACGACATGCGGATAATTGG 59.778 50.000 12.85 0.00 46.49 3.16
1907 2080 2.102420 AGACGACATGCGGATAATTGGA 59.898 45.455 12.85 0.00 46.49 3.53
1908 2081 2.869801 GACGACATGCGGATAATTGGAA 59.130 45.455 12.85 0.00 46.49 3.53
1909 2082 2.872245 ACGACATGCGGATAATTGGAAG 59.128 45.455 12.85 0.00 46.49 3.46
1910 2083 2.349817 CGACATGCGGATAATTGGAAGC 60.350 50.000 0.00 0.00 36.03 3.86
1911 2084 2.880890 GACATGCGGATAATTGGAAGCT 59.119 45.455 0.00 0.00 0.00 3.74
1912 2085 4.065088 GACATGCGGATAATTGGAAGCTA 58.935 43.478 0.00 0.00 0.00 3.32
1913 2086 4.460263 ACATGCGGATAATTGGAAGCTAA 58.540 39.130 0.00 0.00 0.00 3.09
1914 2087 4.516698 ACATGCGGATAATTGGAAGCTAAG 59.483 41.667 0.00 0.00 0.00 2.18
1915 2088 4.415881 TGCGGATAATTGGAAGCTAAGA 57.584 40.909 0.00 0.00 0.00 2.10
1916 2089 4.973168 TGCGGATAATTGGAAGCTAAGAT 58.027 39.130 0.00 0.00 0.00 2.40
1917 2090 4.756642 TGCGGATAATTGGAAGCTAAGATG 59.243 41.667 0.00 0.00 0.00 2.90
1918 2091 4.997395 GCGGATAATTGGAAGCTAAGATGA 59.003 41.667 0.00 0.00 0.00 2.92
1919 2092 5.470098 GCGGATAATTGGAAGCTAAGATGAA 59.530 40.000 0.00 0.00 0.00 2.57
1920 2093 6.017109 GCGGATAATTGGAAGCTAAGATGAAA 60.017 38.462 0.00 0.00 0.00 2.69
1921 2094 7.468631 GCGGATAATTGGAAGCTAAGATGAAAA 60.469 37.037 0.00 0.00 0.00 2.29
1922 2095 8.405531 CGGATAATTGGAAGCTAAGATGAAAAA 58.594 33.333 0.00 0.00 0.00 1.94
1953 2126 5.560966 GGTGTATCCATACAACCAAACAG 57.439 43.478 3.67 0.00 43.45 3.16
1954 2127 5.007682 GGTGTATCCATACAACCAAACAGT 58.992 41.667 3.67 0.00 43.45 3.55
1955 2128 5.475564 GGTGTATCCATACAACCAAACAGTT 59.524 40.000 3.67 0.00 43.45 3.16
1956 2129 6.655848 GGTGTATCCATACAACCAAACAGTTA 59.344 38.462 3.67 0.00 43.45 2.24
1957 2130 7.175293 GGTGTATCCATACAACCAAACAGTTAA 59.825 37.037 3.67 0.00 43.45 2.01
1958 2131 8.569641 GTGTATCCATACAACCAAACAGTTAAA 58.430 33.333 0.85 0.00 44.11 1.52
1959 2132 9.132923 TGTATCCATACAACCAAACAGTTAAAA 57.867 29.630 0.00 0.00 40.08 1.52
1960 2133 9.968870 GTATCCATACAACCAAACAGTTAAAAA 57.031 29.630 0.00 0.00 33.52 1.94
1980 2153 6.963049 AAAAAGCAGCAGATTTGATTCATC 57.037 33.333 0.00 0.00 32.90 2.92
1981 2154 5.654603 AAAGCAGCAGATTTGATTCATCA 57.345 34.783 0.00 0.00 31.05 3.07
1982 2155 5.854010 AAGCAGCAGATTTGATTCATCAT 57.146 34.783 0.00 0.00 36.56 2.45
1983 2156 5.854010 AGCAGCAGATTTGATTCATCATT 57.146 34.783 0.00 0.00 36.56 2.57
1984 2157 6.954487 AGCAGCAGATTTGATTCATCATTA 57.046 33.333 0.00 0.00 36.56 1.90
1985 2158 7.526142 AGCAGCAGATTTGATTCATCATTAT 57.474 32.000 0.00 0.00 36.56 1.28
1986 2159 8.631480 AGCAGCAGATTTGATTCATCATTATA 57.369 30.769 0.00 0.00 36.56 0.98
1987 2160 9.074576 AGCAGCAGATTTGATTCATCATTATAA 57.925 29.630 0.00 0.00 36.56 0.98
1988 2161 9.687210 GCAGCAGATTTGATTCATCATTATAAA 57.313 29.630 0.00 0.00 36.56 1.40
2001 2174 9.777297 TTCATCATTATAAATTGGTGATCGAGA 57.223 29.630 3.45 0.00 33.24 4.04
2002 2175 9.948964 TCATCATTATAAATTGGTGATCGAGAT 57.051 29.630 0.00 0.00 28.24 2.75
2010 2183 7.502120 AAATTGGTGATCGAGATTTATCAGG 57.498 36.000 0.00 0.00 32.93 3.86
2011 2184 5.869649 TTGGTGATCGAGATTTATCAGGA 57.130 39.130 0.00 0.00 32.93 3.86
2012 2185 6.425210 TTGGTGATCGAGATTTATCAGGAT 57.575 37.500 0.00 0.00 32.93 3.24
2013 2186 7.539034 TTGGTGATCGAGATTTATCAGGATA 57.461 36.000 0.00 0.00 32.93 2.59
2014 2187 7.539034 TGGTGATCGAGATTTATCAGGATAA 57.461 36.000 0.00 0.00 32.93 1.75
2015 2188 7.378966 TGGTGATCGAGATTTATCAGGATAAC 58.621 38.462 1.33 0.00 32.93 1.89
2016 2189 7.015195 TGGTGATCGAGATTTATCAGGATAACA 59.985 37.037 1.33 0.00 32.93 2.41
2017 2190 7.329717 GGTGATCGAGATTTATCAGGATAACAC 59.670 40.741 1.33 4.56 32.93 3.32
2018 2191 7.061210 GTGATCGAGATTTATCAGGATAACACG 59.939 40.741 1.33 3.16 32.93 4.49
2019 2192 6.628919 TCGAGATTTATCAGGATAACACGA 57.371 37.500 1.33 5.11 33.40 4.35
2020 2193 7.215719 TCGAGATTTATCAGGATAACACGAT 57.784 36.000 1.33 0.00 33.40 3.73
2021 2194 7.658261 TCGAGATTTATCAGGATAACACGATT 58.342 34.615 1.33 0.00 33.40 3.34
2022 2195 8.789762 TCGAGATTTATCAGGATAACACGATTA 58.210 33.333 1.33 0.00 33.40 1.75
2023 2196 9.406828 CGAGATTTATCAGGATAACACGATTAA 57.593 33.333 1.33 0.00 33.40 1.40
2029 2202 6.844696 TCAGGATAACACGATTAATTCAGC 57.155 37.500 0.00 0.00 0.00 4.26
2030 2203 6.345298 TCAGGATAACACGATTAATTCAGCA 58.655 36.000 0.00 0.00 0.00 4.41
2031 2204 6.257849 TCAGGATAACACGATTAATTCAGCAC 59.742 38.462 0.00 0.00 0.00 4.40
2032 2205 5.527582 AGGATAACACGATTAATTCAGCACC 59.472 40.000 0.00 0.00 0.00 5.01
2033 2206 5.527582 GGATAACACGATTAATTCAGCACCT 59.472 40.000 0.00 0.00 0.00 4.00
2034 2207 6.704493 GGATAACACGATTAATTCAGCACCTA 59.296 38.462 0.00 0.00 0.00 3.08
2035 2208 7.225931 GGATAACACGATTAATTCAGCACCTAA 59.774 37.037 0.00 0.00 0.00 2.69
2036 2209 6.811253 AACACGATTAATTCAGCACCTAAA 57.189 33.333 0.00 0.00 0.00 1.85
2037 2210 7.391148 AACACGATTAATTCAGCACCTAAAT 57.609 32.000 0.00 0.00 0.00 1.40
2038 2211 8.500753 AACACGATTAATTCAGCACCTAAATA 57.499 30.769 0.00 0.00 0.00 1.40
2039 2212 7.916552 ACACGATTAATTCAGCACCTAAATAC 58.083 34.615 0.00 0.00 0.00 1.89
2040 2213 7.063456 CACGATTAATTCAGCACCTAAATACG 58.937 38.462 0.00 0.00 0.00 3.06
2041 2214 6.982141 ACGATTAATTCAGCACCTAAATACGA 59.018 34.615 0.00 0.00 0.00 3.43
2042 2215 7.042925 ACGATTAATTCAGCACCTAAATACGAC 60.043 37.037 0.00 0.00 0.00 4.34
2043 2216 7.042992 CGATTAATTCAGCACCTAAATACGACA 60.043 37.037 0.00 0.00 0.00 4.35
2044 2217 7.908827 TTAATTCAGCACCTAAATACGACAA 57.091 32.000 0.00 0.00 0.00 3.18
2045 2218 8.500753 TTAATTCAGCACCTAAATACGACAAT 57.499 30.769 0.00 0.00 0.00 2.71
2046 2219 9.602568 TTAATTCAGCACCTAAATACGACAATA 57.397 29.630 0.00 0.00 0.00 1.90
2047 2220 8.677148 AATTCAGCACCTAAATACGACAATAT 57.323 30.769 0.00 0.00 0.00 1.28
2048 2221 7.477144 TTCAGCACCTAAATACGACAATATG 57.523 36.000 0.00 0.00 0.00 1.78
2049 2222 5.465390 TCAGCACCTAAATACGACAATATGC 59.535 40.000 0.00 0.00 0.00 3.14
2050 2223 5.466728 CAGCACCTAAATACGACAATATGCT 59.533 40.000 0.00 0.00 40.16 3.79
2051 2224 6.017934 CAGCACCTAAATACGACAATATGCTT 60.018 38.462 0.00 0.00 37.58 3.91
2052 2225 6.017934 AGCACCTAAATACGACAATATGCTTG 60.018 38.462 0.00 0.00 36.31 4.01
2053 2226 6.018262 GCACCTAAATACGACAATATGCTTGA 60.018 38.462 0.00 0.00 0.00 3.02
2054 2227 7.345192 CACCTAAATACGACAATATGCTTGAC 58.655 38.462 0.00 0.00 0.00 3.18
2055 2228 6.482308 ACCTAAATACGACAATATGCTTGACC 59.518 38.462 0.00 0.00 0.00 4.02
2056 2229 5.403897 AAATACGACAATATGCTTGACCG 57.596 39.130 0.00 0.00 0.00 4.79
2057 2230 2.665649 ACGACAATATGCTTGACCGA 57.334 45.000 0.00 0.00 0.00 4.69
2058 2231 2.540515 ACGACAATATGCTTGACCGAG 58.459 47.619 0.00 0.00 0.00 4.63
2059 2232 2.165641 ACGACAATATGCTTGACCGAGA 59.834 45.455 0.00 0.00 0.00 4.04
2060 2233 3.181475 ACGACAATATGCTTGACCGAGAT 60.181 43.478 0.00 0.00 0.00 2.75
2061 2234 4.037565 ACGACAATATGCTTGACCGAGATA 59.962 41.667 0.00 0.00 0.00 1.98
2062 2235 4.383052 CGACAATATGCTTGACCGAGATAC 59.617 45.833 0.00 0.00 0.00 2.24
2063 2236 5.276461 ACAATATGCTTGACCGAGATACA 57.724 39.130 0.00 0.00 0.00 2.29
2064 2237 5.670485 ACAATATGCTTGACCGAGATACAA 58.330 37.500 0.00 0.00 0.00 2.41
2065 2238 5.523916 ACAATATGCTTGACCGAGATACAAC 59.476 40.000 0.00 0.00 0.00 3.32
2066 2239 1.990799 TGCTTGACCGAGATACAACG 58.009 50.000 0.00 0.00 0.00 4.10
2067 2240 1.542472 TGCTTGACCGAGATACAACGA 59.458 47.619 0.00 0.00 0.00 3.85
2068 2241 1.918609 GCTTGACCGAGATACAACGAC 59.081 52.381 0.00 0.00 0.00 4.34
2069 2242 2.670229 GCTTGACCGAGATACAACGACA 60.670 50.000 0.00 0.00 0.00 4.35
2070 2243 2.913777 TGACCGAGATACAACGACAG 57.086 50.000 0.00 0.00 0.00 3.51
2071 2244 2.156917 TGACCGAGATACAACGACAGT 58.843 47.619 0.00 0.00 0.00 3.55
2072 2245 3.337358 TGACCGAGATACAACGACAGTA 58.663 45.455 0.00 0.00 0.00 2.74
2073 2246 3.752747 TGACCGAGATACAACGACAGTAA 59.247 43.478 0.00 0.00 0.00 2.24
2074 2247 4.216042 TGACCGAGATACAACGACAGTAAA 59.784 41.667 0.00 0.00 0.00 2.01
2075 2248 4.479619 ACCGAGATACAACGACAGTAAAC 58.520 43.478 0.00 0.00 0.00 2.01
2076 2249 4.022935 ACCGAGATACAACGACAGTAAACA 60.023 41.667 0.00 0.00 0.00 2.83
2077 2250 5.100259 CCGAGATACAACGACAGTAAACAT 58.900 41.667 0.00 0.00 0.00 2.71
2078 2251 6.127925 ACCGAGATACAACGACAGTAAACATA 60.128 38.462 0.00 0.00 0.00 2.29
2079 2252 6.195983 CCGAGATACAACGACAGTAAACATAC 59.804 42.308 0.00 0.00 0.00 2.39
2080 2253 6.744082 CGAGATACAACGACAGTAAACATACA 59.256 38.462 0.00 0.00 0.00 2.29
2081 2254 7.431376 CGAGATACAACGACAGTAAACATACAT 59.569 37.037 0.00 0.00 0.00 2.29
2082 2255 8.407457 AGATACAACGACAGTAAACATACATG 57.593 34.615 0.00 0.00 0.00 3.21
2083 2256 5.856126 ACAACGACAGTAAACATACATGG 57.144 39.130 0.00 0.00 0.00 3.66
2084 2257 5.302360 ACAACGACAGTAAACATACATGGT 58.698 37.500 0.00 0.00 0.00 3.55
2085 2258 5.178623 ACAACGACAGTAAACATACATGGTG 59.821 40.000 0.00 0.00 0.00 4.17
2086 2259 4.890088 ACGACAGTAAACATACATGGTGT 58.110 39.130 0.00 0.00 0.00 4.16
2087 2260 6.028146 ACGACAGTAAACATACATGGTGTA 57.972 37.500 6.45 0.00 37.24 2.90
2088 2261 6.636705 ACGACAGTAAACATACATGGTGTAT 58.363 36.000 6.45 0.00 43.81 2.29
2103 2276 7.734538 CATGGTGTATGTTTTCGAAATAACC 57.265 36.000 12.12 12.75 31.92 2.85
2104 2277 5.929278 TGGTGTATGTTTTCGAAATAACCG 58.071 37.500 12.12 0.00 0.00 4.44
2105 2278 5.469421 TGGTGTATGTTTTCGAAATAACCGT 59.531 36.000 12.12 4.66 0.00 4.83
2106 2279 5.791480 GGTGTATGTTTTCGAAATAACCGTG 59.209 40.000 12.12 0.00 0.00 4.94
2107 2280 6.365050 GTGTATGTTTTCGAAATAACCGTGT 58.635 36.000 12.12 0.00 0.00 4.49
2108 2281 6.517374 GTGTATGTTTTCGAAATAACCGTGTC 59.483 38.462 12.12 0.00 0.00 3.67
2109 2282 5.676532 ATGTTTTCGAAATAACCGTGTCA 57.323 34.783 12.12 1.56 0.00 3.58
2110 2283 4.835344 TGTTTTCGAAATAACCGTGTCAC 58.165 39.130 12.12 3.36 0.00 3.67
2111 2284 4.213674 GTTTTCGAAATAACCGTGTCACC 58.786 43.478 12.12 0.00 0.00 4.02
2112 2285 3.389925 TTCGAAATAACCGTGTCACCT 57.610 42.857 0.00 0.00 0.00 4.00
2113 2286 2.950433 TCGAAATAACCGTGTCACCTC 58.050 47.619 0.00 0.00 0.00 3.85
2114 2287 2.559668 TCGAAATAACCGTGTCACCTCT 59.440 45.455 0.00 0.00 0.00 3.69
2115 2288 3.758023 TCGAAATAACCGTGTCACCTCTA 59.242 43.478 0.00 0.00 0.00 2.43
2116 2289 4.400251 TCGAAATAACCGTGTCACCTCTAT 59.600 41.667 0.00 0.00 0.00 1.98
2117 2290 4.738740 CGAAATAACCGTGTCACCTCTATC 59.261 45.833 0.00 0.00 0.00 2.08
2118 2291 5.657474 GAAATAACCGTGTCACCTCTATCA 58.343 41.667 0.00 0.00 0.00 2.15
2119 2292 5.871396 AATAACCGTGTCACCTCTATCAT 57.129 39.130 0.00 0.00 0.00 2.45
2120 2293 3.802948 AACCGTGTCACCTCTATCATC 57.197 47.619 0.00 0.00 0.00 2.92
2121 2294 3.019799 ACCGTGTCACCTCTATCATCT 57.980 47.619 0.00 0.00 0.00 2.90
2122 2295 2.952978 ACCGTGTCACCTCTATCATCTC 59.047 50.000 0.00 0.00 0.00 2.75
2123 2296 3.218453 CCGTGTCACCTCTATCATCTCT 58.782 50.000 0.00 0.00 0.00 3.10
2124 2297 4.141459 ACCGTGTCACCTCTATCATCTCTA 60.141 45.833 0.00 0.00 0.00 2.43
2125 2298 5.007034 CCGTGTCACCTCTATCATCTCTAT 58.993 45.833 0.00 0.00 0.00 1.98
2126 2299 5.106357 CCGTGTCACCTCTATCATCTCTATG 60.106 48.000 0.00 0.00 0.00 2.23
2127 2300 5.703130 CGTGTCACCTCTATCATCTCTATGA 59.297 44.000 0.00 0.00 46.01 2.15
2128 2301 6.128309 CGTGTCACCTCTATCATCTCTATGAG 60.128 46.154 0.00 0.00 45.17 2.90
2129 2302 6.939730 GTGTCACCTCTATCATCTCTATGAGA 59.060 42.308 0.00 0.00 45.17 3.27
2130 2303 7.446931 GTGTCACCTCTATCATCTCTATGAGAA 59.553 40.741 1.20 0.00 45.17 2.87
2131 2304 8.001292 TGTCACCTCTATCATCTCTATGAGAAA 58.999 37.037 1.20 0.00 45.17 2.52
2132 2305 8.855110 GTCACCTCTATCATCTCTATGAGAAAA 58.145 37.037 1.20 0.00 45.17 2.29
2133 2306 8.855110 TCACCTCTATCATCTCTATGAGAAAAC 58.145 37.037 1.20 0.00 45.17 2.43
2134 2307 8.637099 CACCTCTATCATCTCTATGAGAAAACA 58.363 37.037 1.20 0.00 45.17 2.83
2135 2308 9.378504 ACCTCTATCATCTCTATGAGAAAACAT 57.621 33.333 1.20 0.00 45.17 2.71
2141 2314 9.979578 ATCATCTCTATGAGAAAACATAGTGTC 57.020 33.333 13.07 0.00 45.17 3.67
2142 2315 8.131731 TCATCTCTATGAGAAAACATAGTGTCG 58.868 37.037 13.07 8.24 45.54 4.35
2143 2316 6.796426 TCTCTATGAGAAAACATAGTGTCGG 58.204 40.000 13.07 3.91 45.54 4.79
2144 2317 5.348986 TCTATGAGAAAACATAGTGTCGGC 58.651 41.667 13.07 0.00 45.54 5.54
2145 2318 2.333926 TGAGAAAACATAGTGTCGGCG 58.666 47.619 0.00 0.00 0.00 6.46
2146 2319 2.288579 TGAGAAAACATAGTGTCGGCGT 60.289 45.455 6.85 0.00 0.00 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.598856 CCTCCTCCTCTCTCCCCCTT 61.599 65.000 0.00 0.00 0.00 3.95
33 34 5.386060 TCTTTTCTTCTTCCCCTTTTCCTC 58.614 41.667 0.00 0.00 0.00 3.71
64 66 1.683319 GGCCTCCCATCTCTTTTCACC 60.683 57.143 0.00 0.00 0.00 4.02
71 73 1.760086 CTGTCGGCCTCCCATCTCT 60.760 63.158 0.00 0.00 0.00 3.10
143 145 2.275380 GGTTGGCCCCACATGTCAC 61.275 63.158 0.00 0.00 0.00 3.67
146 148 2.118076 CAGGTTGGCCCCACATGT 59.882 61.111 0.00 0.00 34.57 3.21
181 183 2.108700 CCGATTCAAAATTAAGCCGCG 58.891 47.619 0.00 0.00 0.00 6.46
254 256 8.625467 AGGGTACTCCTAAACTATCATCTTTT 57.375 34.615 1.40 0.00 45.98 2.27
258 260 7.943447 TGACTAGGGTACTCCTAAACTATCATC 59.057 40.741 10.27 2.26 46.76 2.92
259 261 7.724951 GTGACTAGGGTACTCCTAAACTATCAT 59.275 40.741 10.27 0.00 46.76 2.45
262 264 6.978261 TGTGACTAGGGTACTCCTAAACTAT 58.022 40.000 10.27 0.00 46.76 2.12
285 287 3.176552 TGCTGAAAACCACCACATTTG 57.823 42.857 0.00 0.00 0.00 2.32
293 295 3.668656 GCGAGTAAATTGCTGAAAACCAC 59.331 43.478 0.00 0.00 35.18 4.16
297 299 5.633182 GGATTTGCGAGTAAATTGCTGAAAA 59.367 36.000 1.02 0.00 39.30 2.29
301 303 4.361451 AGGATTTGCGAGTAAATTGCTG 57.639 40.909 1.02 0.00 39.30 4.41
359 361 9.442047 ACCAGATTAAGTAGAACTTTGATTCTG 57.558 33.333 0.00 6.02 39.51 3.02
364 366 9.621629 TTTCAACCAGATTAAGTAGAACTTTGA 57.378 29.630 0.00 0.00 39.51 2.69
374 376 7.653311 GCATTTGAGTTTTCAACCAGATTAAGT 59.347 33.333 0.00 0.00 42.79 2.24
408 410 6.147985 GGAAACTCATTCGATAGGAAATAGCC 59.852 42.308 0.00 0.00 39.05 3.93
418 420 5.258456 AGTTAGCGGAAACTCATTCGATA 57.742 39.130 0.00 0.00 39.05 2.92
477 479 1.084478 GTGTTGTTGCGACGACGAC 60.084 57.895 17.95 13.41 42.16 4.34
480 482 1.754436 TTCCGTGTTGTTGCGACGAC 61.754 55.000 16.61 16.61 40.08 4.34
484 486 1.268794 CCAATTTCCGTGTTGTTGCGA 60.269 47.619 0.00 0.00 0.00 5.10
485 487 1.127701 CCAATTTCCGTGTTGTTGCG 58.872 50.000 0.00 0.00 0.00 4.85
608 619 4.916983 AGCAAGCTATGTTTTGTCAACA 57.083 36.364 0.00 0.00 34.31 3.33
663 675 2.035449 TGGTCAAGCGTCCGGAATATAG 59.965 50.000 5.23 0.00 0.00 1.31
726 738 2.219458 TCTTGATCTAGCCGACGGTAG 58.781 52.381 16.73 15.02 40.74 3.18
727 739 2.219458 CTCTTGATCTAGCCGACGGTA 58.781 52.381 16.73 5.93 0.00 4.02
728 740 1.025812 CTCTTGATCTAGCCGACGGT 58.974 55.000 16.73 4.97 0.00 4.83
729 741 0.318275 GCTCTTGATCTAGCCGACGG 60.318 60.000 10.29 10.29 32.40 4.79
730 742 3.171705 GCTCTTGATCTAGCCGACG 57.828 57.895 0.00 0.00 32.40 5.12
737 787 1.823295 GGTGCCGGCTCTTGATCTA 59.177 57.895 29.70 0.00 0.00 1.98
902 967 4.342665 AGCCACAGTATTCTACTTCTAGGC 59.657 45.833 0.00 0.00 36.76 3.93
922 987 1.730451 GGAGAGAGGTCGCACTAGCC 61.730 65.000 0.00 0.00 37.52 3.93
933 998 0.327591 AGCTTGCTTTGGGAGAGAGG 59.672 55.000 0.00 0.00 0.00 3.69
940 1005 2.570135 GATCCTAGAGCTTGCTTTGGG 58.430 52.381 8.84 8.84 0.00 4.12
984 1049 1.953559 CCATCCCGATCGAACAATGT 58.046 50.000 18.66 0.00 0.00 2.71
1361 1461 2.630098 CGTCACTGGTCCCATCTGATAT 59.370 50.000 0.00 0.00 0.00 1.63
1414 1537 8.392372 AGTACTCATTTTTCTAGGTTTTGTCC 57.608 34.615 0.00 0.00 0.00 4.02
1456 1608 5.245977 CCCCTTAACAACAAGGATTTCATGT 59.754 40.000 3.44 0.00 46.94 3.21
1493 1645 2.932130 CTAGCTTTCGCCCTGGCCTC 62.932 65.000 3.32 0.00 37.98 4.70
1494 1646 3.009115 TAGCTTTCGCCCTGGCCT 61.009 61.111 3.32 0.00 37.98 5.19
1504 1676 1.732809 GGGCGTTTGAGTCTAGCTTTC 59.267 52.381 0.00 0.00 0.00 2.62
1609 1782 7.386573 TCTGTGCTCTCGAACATATTTGTAAAA 59.613 33.333 0.00 0.00 34.06 1.52
1625 1798 4.372656 ACACACTTTACTTCTGTGCTCTC 58.627 43.478 0.00 0.00 39.16 3.20
1646 1819 8.844441 TGCACAACAAACAACTAAATACTAAC 57.156 30.769 0.00 0.00 0.00 2.34
1662 1835 3.332919 ACAACAATGCTTTGCACAACAA 58.667 36.364 11.96 0.00 43.04 2.83
1663 1836 2.969990 ACAACAATGCTTTGCACAACA 58.030 38.095 11.96 0.00 43.04 3.33
1664 1837 5.462034 TTTACAACAATGCTTTGCACAAC 57.538 34.783 11.96 0.00 43.04 3.32
1665 1838 6.073058 TGTTTTTACAACAATGCTTTGCACAA 60.073 30.769 11.96 0.00 43.04 3.33
1666 1839 5.409520 TGTTTTTACAACAATGCTTTGCACA 59.590 32.000 11.96 1.19 43.04 4.57
1667 1840 5.862811 TGTTTTTACAACAATGCTTTGCAC 58.137 33.333 11.96 0.00 43.04 4.57
1668 1841 6.486253 TTGTTTTTACAACAATGCTTTGCA 57.514 29.167 11.96 0.00 44.86 4.08
1671 1844 9.389755 AGGTATTTGTTTTTACAACAATGCTTT 57.610 25.926 0.00 0.00 39.56 3.51
1681 1854 9.349713 AGTCTTGATGAGGTATTTGTTTTTACA 57.650 29.630 0.00 0.00 0.00 2.41
1731 1904 4.201950 GGATGATAACAACATGAGTGTGGC 60.202 45.833 0.00 0.00 38.92 5.01
1732 1905 4.943093 TGGATGATAACAACATGAGTGTGG 59.057 41.667 0.00 0.00 38.92 4.17
1735 1908 6.688637 ACATGGATGATAACAACATGAGTG 57.311 37.500 20.35 0.00 42.50 3.51
1763 1936 1.686115 GCCCTGGCCACTAATGTTGAT 60.686 52.381 0.00 0.00 34.56 2.57
1778 1951 4.976925 CATAGGAGGCGCGCCCTG 62.977 72.222 44.47 28.56 46.60 4.45
1786 1959 1.009829 CACAGAAACGCATAGGAGGC 58.990 55.000 0.00 0.00 0.00 4.70
1787 1960 1.009829 GCACAGAAACGCATAGGAGG 58.990 55.000 0.00 0.00 0.00 4.30
1788 1961 0.647410 CGCACAGAAACGCATAGGAG 59.353 55.000 0.00 0.00 0.00 3.69
1789 1962 0.037697 ACGCACAGAAACGCATAGGA 60.038 50.000 0.00 0.00 0.00 2.94
1790 1963 1.323534 GTACGCACAGAAACGCATAGG 59.676 52.381 0.00 0.00 0.00 2.57
1791 1964 1.323534 GGTACGCACAGAAACGCATAG 59.676 52.381 0.00 0.00 0.00 2.23
1792 1965 1.336980 TGGTACGCACAGAAACGCATA 60.337 47.619 0.00 0.00 0.00 3.14
1793 1966 0.601576 TGGTACGCACAGAAACGCAT 60.602 50.000 0.00 0.00 0.00 4.73
1794 1967 0.810426 TTGGTACGCACAGAAACGCA 60.810 50.000 0.00 0.00 0.00 5.24
1795 1968 0.515564 ATTGGTACGCACAGAAACGC 59.484 50.000 0.00 0.00 0.00 4.84
1796 1969 2.066262 AGATTGGTACGCACAGAAACG 58.934 47.619 0.00 0.00 0.00 3.60
1797 1970 3.062234 GCTAGATTGGTACGCACAGAAAC 59.938 47.826 0.00 0.00 0.00 2.78
1798 1971 3.056107 AGCTAGATTGGTACGCACAGAAA 60.056 43.478 0.00 0.00 0.00 2.52
1799 1972 2.496070 AGCTAGATTGGTACGCACAGAA 59.504 45.455 0.00 0.00 0.00 3.02
1800 1973 2.100197 AGCTAGATTGGTACGCACAGA 58.900 47.619 0.00 0.00 0.00 3.41
1801 1974 2.586258 AGCTAGATTGGTACGCACAG 57.414 50.000 0.00 0.00 0.00 3.66
1802 1975 3.328382 AAAGCTAGATTGGTACGCACA 57.672 42.857 0.00 0.00 0.00 4.57
1803 1976 3.435671 ACAAAAGCTAGATTGGTACGCAC 59.564 43.478 0.00 0.00 0.00 5.34
1804 1977 3.670625 ACAAAAGCTAGATTGGTACGCA 58.329 40.909 0.00 0.00 0.00 5.24
1805 1978 4.868734 AGTACAAAAGCTAGATTGGTACGC 59.131 41.667 20.86 7.40 0.00 4.42
1806 1979 6.367969 ACAAGTACAAAAGCTAGATTGGTACG 59.632 38.462 20.86 14.41 0.00 3.67
1807 1980 7.386848 TCACAAGTACAAAAGCTAGATTGGTAC 59.613 37.037 20.10 20.10 0.00 3.34
1808 1981 7.446769 TCACAAGTACAAAAGCTAGATTGGTA 58.553 34.615 0.00 0.00 0.00 3.25
1809 1982 6.296026 TCACAAGTACAAAAGCTAGATTGGT 58.704 36.000 0.00 0.00 0.00 3.67
1810 1983 6.801539 TCACAAGTACAAAAGCTAGATTGG 57.198 37.500 0.00 0.00 0.00 3.16
1811 1984 8.345565 ACTTTCACAAGTACAAAAGCTAGATTG 58.654 33.333 0.00 0.00 41.81 2.67
1812 1985 8.345565 CACTTTCACAAGTACAAAAGCTAGATT 58.654 33.333 0.00 0.00 41.69 2.40
1813 1986 7.520614 GCACTTTCACAAGTACAAAAGCTAGAT 60.521 37.037 0.00 0.00 41.69 1.98
1814 1987 6.238374 GCACTTTCACAAGTACAAAAGCTAGA 60.238 38.462 0.00 0.00 41.69 2.43
1815 1988 5.909610 GCACTTTCACAAGTACAAAAGCTAG 59.090 40.000 0.00 0.00 41.69 3.42
1816 1989 5.355630 TGCACTTTCACAAGTACAAAAGCTA 59.644 36.000 0.00 0.00 41.69 3.32
1817 1990 4.157656 TGCACTTTCACAAGTACAAAAGCT 59.842 37.500 0.00 0.00 41.69 3.74
1818 1991 4.420168 TGCACTTTCACAAGTACAAAAGC 58.580 39.130 0.00 0.00 41.69 3.51
1819 1992 6.035843 ACATGCACTTTCACAAGTACAAAAG 58.964 36.000 0.00 0.00 41.69 2.27
1820 1993 5.960113 ACATGCACTTTCACAAGTACAAAA 58.040 33.333 0.00 0.00 41.69 2.44
1821 1994 5.574891 ACATGCACTTTCACAAGTACAAA 57.425 34.783 0.00 0.00 41.69 2.83
1822 1995 5.574891 AACATGCACTTTCACAAGTACAA 57.425 34.783 0.00 0.00 41.69 2.41
1823 1996 5.124617 TCAAACATGCACTTTCACAAGTACA 59.875 36.000 0.00 0.00 41.69 2.90
1824 1997 5.577835 TCAAACATGCACTTTCACAAGTAC 58.422 37.500 0.00 0.00 41.69 2.73
1825 1998 5.826601 TCAAACATGCACTTTCACAAGTA 57.173 34.783 0.00 0.00 41.69 2.24
1826 1999 4.717233 TCAAACATGCACTTTCACAAGT 57.283 36.364 0.00 0.00 44.72 3.16
1827 2000 5.749588 TGAATCAAACATGCACTTTCACAAG 59.250 36.000 0.00 0.00 35.92 3.16
1828 2001 5.658468 TGAATCAAACATGCACTTTCACAA 58.342 33.333 0.00 0.00 0.00 3.33
1829 2002 5.067544 TCTGAATCAAACATGCACTTTCACA 59.932 36.000 0.00 0.00 0.00 3.58
1830 2003 5.522456 TCTGAATCAAACATGCACTTTCAC 58.478 37.500 0.00 0.00 0.00 3.18
1831 2004 5.278610 CCTCTGAATCAAACATGCACTTTCA 60.279 40.000 0.00 0.00 0.00 2.69
1832 2005 5.048504 TCCTCTGAATCAAACATGCACTTTC 60.049 40.000 0.00 0.00 0.00 2.62
1833 2006 4.828939 TCCTCTGAATCAAACATGCACTTT 59.171 37.500 0.00 0.00 0.00 2.66
1834 2007 4.401022 TCCTCTGAATCAAACATGCACTT 58.599 39.130 0.00 0.00 0.00 3.16
1835 2008 4.008330 CTCCTCTGAATCAAACATGCACT 58.992 43.478 0.00 0.00 0.00 4.40
1836 2009 3.427233 GCTCCTCTGAATCAAACATGCAC 60.427 47.826 0.00 0.00 0.00 4.57
1837 2010 2.751259 GCTCCTCTGAATCAAACATGCA 59.249 45.455 0.00 0.00 0.00 3.96
1838 2011 2.751259 TGCTCCTCTGAATCAAACATGC 59.249 45.455 0.00 0.00 0.00 4.06
1839 2012 3.754850 TGTGCTCCTCTGAATCAAACATG 59.245 43.478 0.00 0.00 0.00 3.21
1840 2013 4.008330 CTGTGCTCCTCTGAATCAAACAT 58.992 43.478 0.00 0.00 0.00 2.71
1841 2014 3.181451 ACTGTGCTCCTCTGAATCAAACA 60.181 43.478 0.00 0.00 0.00 2.83
1842 2015 3.406764 ACTGTGCTCCTCTGAATCAAAC 58.593 45.455 0.00 0.00 0.00 2.93
1843 2016 3.777106 ACTGTGCTCCTCTGAATCAAA 57.223 42.857 0.00 0.00 0.00 2.69
1844 2017 3.181451 ACAACTGTGCTCCTCTGAATCAA 60.181 43.478 0.00 0.00 0.00 2.57
1845 2018 2.369860 ACAACTGTGCTCCTCTGAATCA 59.630 45.455 0.00 0.00 0.00 2.57
1846 2019 3.051081 ACAACTGTGCTCCTCTGAATC 57.949 47.619 0.00 0.00 0.00 2.52
1847 2020 3.498774 AACAACTGTGCTCCTCTGAAT 57.501 42.857 0.00 0.00 0.00 2.57
1848 2021 4.415881 TTAACAACTGTGCTCCTCTGAA 57.584 40.909 0.00 0.00 0.00 3.02
1849 2022 4.415881 TTTAACAACTGTGCTCCTCTGA 57.584 40.909 0.00 0.00 0.00 3.27
1850 2023 5.695851 ATTTTAACAACTGTGCTCCTCTG 57.304 39.130 0.00 0.00 0.00 3.35
1851 2024 7.168219 TCATATTTTAACAACTGTGCTCCTCT 58.832 34.615 0.00 0.00 0.00 3.69
1852 2025 7.377766 TCATATTTTAACAACTGTGCTCCTC 57.622 36.000 0.00 0.00 0.00 3.71
1853 2026 7.759489 TTCATATTTTAACAACTGTGCTCCT 57.241 32.000 0.00 0.00 0.00 3.69
1854 2027 7.009540 GCATTCATATTTTAACAACTGTGCTCC 59.990 37.037 0.00 0.00 0.00 4.70
1855 2028 7.756722 AGCATTCATATTTTAACAACTGTGCTC 59.243 33.333 0.00 0.00 31.78 4.26
1856 2029 7.543172 CAGCATTCATATTTTAACAACTGTGCT 59.457 33.333 0.00 0.00 37.17 4.40
1857 2030 7.329226 ACAGCATTCATATTTTAACAACTGTGC 59.671 33.333 0.00 0.00 32.64 4.57
1858 2031 8.746922 ACAGCATTCATATTTTAACAACTGTG 57.253 30.769 0.00 0.00 32.64 3.66
1859 2032 9.410556 GAACAGCATTCATATTTTAACAACTGT 57.589 29.630 0.00 0.00 35.15 3.55
1860 2033 9.409312 TGAACAGCATTCATATTTTAACAACTG 57.591 29.630 0.00 0.00 0.00 3.16
1861 2034 9.630098 CTGAACAGCATTCATATTTTAACAACT 57.370 29.630 4.10 0.00 0.00 3.16
1862 2035 9.624697 TCTGAACAGCATTCATATTTTAACAAC 57.375 29.630 4.10 0.00 0.00 3.32
1863 2036 9.624697 GTCTGAACAGCATTCATATTTTAACAA 57.375 29.630 4.10 0.00 0.00 2.83
1864 2037 7.962373 CGTCTGAACAGCATTCATATTTTAACA 59.038 33.333 4.10 0.00 0.00 2.41
1865 2038 8.175069 TCGTCTGAACAGCATTCATATTTTAAC 58.825 33.333 4.10 0.00 0.00 2.01
1866 2039 8.175069 GTCGTCTGAACAGCATTCATATTTTAA 58.825 33.333 4.10 0.00 0.00 1.52
1867 2040 7.333174 TGTCGTCTGAACAGCATTCATATTTTA 59.667 33.333 4.10 0.00 0.00 1.52
1868 2041 6.149308 TGTCGTCTGAACAGCATTCATATTTT 59.851 34.615 4.10 0.00 0.00 1.82
1869 2042 5.643348 TGTCGTCTGAACAGCATTCATATTT 59.357 36.000 4.10 0.00 0.00 1.40
1870 2043 5.178061 TGTCGTCTGAACAGCATTCATATT 58.822 37.500 4.10 0.00 0.00 1.28
1871 2044 4.758688 TGTCGTCTGAACAGCATTCATAT 58.241 39.130 4.10 0.00 0.00 1.78
1872 2045 4.186856 TGTCGTCTGAACAGCATTCATA 57.813 40.909 4.10 0.00 0.00 2.15
1873 2046 3.044235 TGTCGTCTGAACAGCATTCAT 57.956 42.857 4.10 0.00 0.00 2.57
1874 2047 2.524569 TGTCGTCTGAACAGCATTCA 57.475 45.000 3.67 3.67 0.00 2.57
1875 2048 2.475187 GCATGTCGTCTGAACAGCATTC 60.475 50.000 0.00 0.00 0.00 2.67
1876 2049 1.466167 GCATGTCGTCTGAACAGCATT 59.534 47.619 0.00 0.00 0.00 3.56
1877 2050 1.081892 GCATGTCGTCTGAACAGCAT 58.918 50.000 0.00 0.00 0.00 3.79
1878 2051 1.284297 CGCATGTCGTCTGAACAGCA 61.284 55.000 0.00 0.00 0.00 4.41
1879 2052 1.417592 CGCATGTCGTCTGAACAGC 59.582 57.895 0.00 0.00 0.00 4.40
1880 2053 0.388520 TCCGCATGTCGTCTGAACAG 60.389 55.000 8.37 0.00 36.19 3.16
1881 2054 0.246360 ATCCGCATGTCGTCTGAACA 59.754 50.000 8.37 0.00 36.19 3.18
1882 2055 2.203800 TATCCGCATGTCGTCTGAAC 57.796 50.000 8.37 0.00 36.19 3.18
1883 2056 2.951457 TTATCCGCATGTCGTCTGAA 57.049 45.000 8.37 0.00 36.19 3.02
1884 2057 3.123050 CAATTATCCGCATGTCGTCTGA 58.877 45.455 8.37 0.73 36.19 3.27
1885 2058 2.221749 CCAATTATCCGCATGTCGTCTG 59.778 50.000 8.37 0.00 36.19 3.51
1886 2059 2.102420 TCCAATTATCCGCATGTCGTCT 59.898 45.455 8.37 0.00 36.19 4.18
1887 2060 2.479837 TCCAATTATCCGCATGTCGTC 58.520 47.619 8.37 0.00 36.19 4.20
1888 2061 2.613026 TCCAATTATCCGCATGTCGT 57.387 45.000 8.37 0.00 36.19 4.34
1889 2062 2.349817 GCTTCCAATTATCCGCATGTCG 60.350 50.000 0.00 0.00 38.08 4.35
1890 2063 2.880890 AGCTTCCAATTATCCGCATGTC 59.119 45.455 0.00 0.00 0.00 3.06
1891 2064 2.936202 AGCTTCCAATTATCCGCATGT 58.064 42.857 0.00 0.00 0.00 3.21
1892 2065 4.756642 TCTTAGCTTCCAATTATCCGCATG 59.243 41.667 0.00 0.00 0.00 4.06
1893 2066 4.973168 TCTTAGCTTCCAATTATCCGCAT 58.027 39.130 0.00 0.00 0.00 4.73
1894 2067 4.415881 TCTTAGCTTCCAATTATCCGCA 57.584 40.909 0.00 0.00 0.00 5.69
1895 2068 4.997395 TCATCTTAGCTTCCAATTATCCGC 59.003 41.667 0.00 0.00 0.00 5.54
1896 2069 7.496529 TTTCATCTTAGCTTCCAATTATCCG 57.503 36.000 0.00 0.00 0.00 4.18
1934 2107 9.968870 TTTTTAACTGTTTGGTTGTATGGATAC 57.031 29.630 0.00 0.00 0.00 2.24
1957 2130 6.460781 TGATGAATCAAATCTGCTGCTTTTT 58.539 32.000 0.00 0.00 33.08 1.94
1958 2131 6.032956 TGATGAATCAAATCTGCTGCTTTT 57.967 33.333 0.00 0.00 33.08 2.27
1959 2132 5.654603 TGATGAATCAAATCTGCTGCTTT 57.345 34.783 0.00 0.00 33.08 3.51
1960 2133 5.854010 ATGATGAATCAAATCTGCTGCTT 57.146 34.783 0.00 0.00 40.69 3.91
1961 2134 5.854010 AATGATGAATCAAATCTGCTGCT 57.146 34.783 0.00 0.00 40.69 4.24
1962 2135 9.687210 TTTATAATGATGAATCAAATCTGCTGC 57.313 29.630 0.00 0.00 40.69 5.25
1975 2148 9.777297 TCTCGATCACCAATTTATAATGATGAA 57.223 29.630 3.76 0.00 30.23 2.57
1976 2149 9.948964 ATCTCGATCACCAATTTATAATGATGA 57.051 29.630 3.76 0.00 30.23 2.92
1984 2157 9.224267 CCTGATAAATCTCGATCACCAATTTAT 57.776 33.333 10.03 10.03 36.00 1.40
1985 2158 8.428852 TCCTGATAAATCTCGATCACCAATTTA 58.571 33.333 0.00 0.00 0.00 1.40
1986 2159 7.282585 TCCTGATAAATCTCGATCACCAATTT 58.717 34.615 0.00 0.00 0.00 1.82
1987 2160 6.830912 TCCTGATAAATCTCGATCACCAATT 58.169 36.000 0.00 0.00 0.00 2.32
1988 2161 6.425210 TCCTGATAAATCTCGATCACCAAT 57.575 37.500 0.00 0.00 0.00 3.16
1989 2162 5.869649 TCCTGATAAATCTCGATCACCAA 57.130 39.130 0.00 0.00 0.00 3.67
1990 2163 7.015195 TGTTATCCTGATAAATCTCGATCACCA 59.985 37.037 1.32 0.00 35.30 4.17
1991 2164 7.329717 GTGTTATCCTGATAAATCTCGATCACC 59.670 40.741 1.32 0.00 35.30 4.02
1992 2165 7.061210 CGTGTTATCCTGATAAATCTCGATCAC 59.939 40.741 1.32 3.14 35.30 3.06
1993 2166 7.040686 TCGTGTTATCCTGATAAATCTCGATCA 60.041 37.037 1.32 0.00 35.30 2.92
1994 2167 7.306213 TCGTGTTATCCTGATAAATCTCGATC 58.694 38.462 1.32 0.00 35.30 3.69
1995 2168 7.215719 TCGTGTTATCCTGATAAATCTCGAT 57.784 36.000 1.32 0.00 35.30 3.59
1996 2169 6.628919 TCGTGTTATCCTGATAAATCTCGA 57.371 37.500 1.32 6.06 35.30 4.04
1997 2170 7.875316 AATCGTGTTATCCTGATAAATCTCG 57.125 36.000 1.32 4.18 35.30 4.04
2003 2176 8.988934 GCTGAATTAATCGTGTTATCCTGATAA 58.011 33.333 0.00 0.00 0.00 1.75
2004 2177 8.147704 TGCTGAATTAATCGTGTTATCCTGATA 58.852 33.333 0.00 0.00 0.00 2.15
2005 2178 6.992123 TGCTGAATTAATCGTGTTATCCTGAT 59.008 34.615 0.00 0.00 0.00 2.90
2006 2179 6.257849 GTGCTGAATTAATCGTGTTATCCTGA 59.742 38.462 0.00 0.00 0.00 3.86
2007 2180 6.422223 GTGCTGAATTAATCGTGTTATCCTG 58.578 40.000 0.00 0.00 0.00 3.86
2008 2181 5.527582 GGTGCTGAATTAATCGTGTTATCCT 59.472 40.000 0.00 0.00 0.00 3.24
2009 2182 5.527582 AGGTGCTGAATTAATCGTGTTATCC 59.472 40.000 0.00 0.00 0.00 2.59
2010 2183 6.604735 AGGTGCTGAATTAATCGTGTTATC 57.395 37.500 0.00 0.00 0.00 1.75
2011 2184 8.500753 TTTAGGTGCTGAATTAATCGTGTTAT 57.499 30.769 0.00 0.00 0.00 1.89
2012 2185 7.908827 TTTAGGTGCTGAATTAATCGTGTTA 57.091 32.000 0.00 0.00 0.00 2.41
2013 2186 6.811253 TTTAGGTGCTGAATTAATCGTGTT 57.189 33.333 0.00 0.00 0.00 3.32
2014 2187 7.254319 CGTATTTAGGTGCTGAATTAATCGTGT 60.254 37.037 0.00 0.00 0.00 4.49
2015 2188 7.042992 TCGTATTTAGGTGCTGAATTAATCGTG 60.043 37.037 0.00 0.00 0.00 4.35
2016 2189 6.982141 TCGTATTTAGGTGCTGAATTAATCGT 59.018 34.615 0.00 0.00 0.00 3.73
2017 2190 7.042992 TGTCGTATTTAGGTGCTGAATTAATCG 60.043 37.037 0.00 0.00 0.00 3.34
2018 2191 8.138365 TGTCGTATTTAGGTGCTGAATTAATC 57.862 34.615 0.00 0.00 0.00 1.75
2019 2192 8.500753 TTGTCGTATTTAGGTGCTGAATTAAT 57.499 30.769 0.00 0.00 0.00 1.40
2020 2193 7.908827 TTGTCGTATTTAGGTGCTGAATTAA 57.091 32.000 0.00 0.00 0.00 1.40
2021 2194 9.772973 ATATTGTCGTATTTAGGTGCTGAATTA 57.227 29.630 0.00 0.00 0.00 1.40
2022 2195 8.559536 CATATTGTCGTATTTAGGTGCTGAATT 58.440 33.333 0.00 0.00 0.00 2.17
2023 2196 7.307989 GCATATTGTCGTATTTAGGTGCTGAAT 60.308 37.037 0.00 0.00 0.00 2.57
2024 2197 6.018262 GCATATTGTCGTATTTAGGTGCTGAA 60.018 38.462 0.00 0.00 0.00 3.02
2025 2198 5.465390 GCATATTGTCGTATTTAGGTGCTGA 59.535 40.000 0.00 0.00 0.00 4.26
2026 2199 5.466728 AGCATATTGTCGTATTTAGGTGCTG 59.533 40.000 0.00 0.00 37.75 4.41
2027 2200 5.611374 AGCATATTGTCGTATTTAGGTGCT 58.389 37.500 0.00 0.00 34.68 4.40
2028 2201 5.924475 AGCATATTGTCGTATTTAGGTGC 57.076 39.130 0.00 0.00 0.00 5.01
2029 2202 7.345192 GTCAAGCATATTGTCGTATTTAGGTG 58.655 38.462 0.00 0.00 0.00 4.00
2030 2203 6.482308 GGTCAAGCATATTGTCGTATTTAGGT 59.518 38.462 0.00 0.00 0.00 3.08
2031 2204 6.346598 CGGTCAAGCATATTGTCGTATTTAGG 60.347 42.308 0.00 0.00 0.00 2.69
2032 2205 6.419710 TCGGTCAAGCATATTGTCGTATTTAG 59.580 38.462 0.00 0.00 0.00 1.85
2033 2206 6.274579 TCGGTCAAGCATATTGTCGTATTTA 58.725 36.000 0.00 0.00 0.00 1.40
2034 2207 5.113383 TCGGTCAAGCATATTGTCGTATTT 58.887 37.500 0.00 0.00 0.00 1.40
2035 2208 4.689071 TCGGTCAAGCATATTGTCGTATT 58.311 39.130 0.00 0.00 0.00 1.89
2036 2209 4.037565 TCTCGGTCAAGCATATTGTCGTAT 59.962 41.667 0.00 0.00 0.00 3.06
2037 2210 3.379057 TCTCGGTCAAGCATATTGTCGTA 59.621 43.478 0.00 0.00 0.00 3.43
2038 2211 2.165641 TCTCGGTCAAGCATATTGTCGT 59.834 45.455 0.00 0.00 0.00 4.34
2039 2212 2.809446 TCTCGGTCAAGCATATTGTCG 58.191 47.619 0.00 0.00 0.00 4.35
2040 2213 5.289595 TGTATCTCGGTCAAGCATATTGTC 58.710 41.667 0.00 0.00 0.00 3.18
2041 2214 5.276461 TGTATCTCGGTCAAGCATATTGT 57.724 39.130 0.00 0.00 0.00 2.71
2042 2215 5.332581 CGTTGTATCTCGGTCAAGCATATTG 60.333 44.000 0.00 0.00 0.00 1.90
2043 2216 4.745125 CGTTGTATCTCGGTCAAGCATATT 59.255 41.667 0.00 0.00 0.00 1.28
2044 2217 4.037565 TCGTTGTATCTCGGTCAAGCATAT 59.962 41.667 0.00 0.00 0.00 1.78
2045 2218 3.379057 TCGTTGTATCTCGGTCAAGCATA 59.621 43.478 0.00 0.00 0.00 3.14
2046 2219 2.165641 TCGTTGTATCTCGGTCAAGCAT 59.834 45.455 0.00 0.00 0.00 3.79
2047 2220 1.542472 TCGTTGTATCTCGGTCAAGCA 59.458 47.619 0.00 0.00 0.00 3.91
2048 2221 1.918609 GTCGTTGTATCTCGGTCAAGC 59.081 52.381 0.00 0.00 0.00 4.01
2049 2222 3.172050 CTGTCGTTGTATCTCGGTCAAG 58.828 50.000 0.00 0.00 0.00 3.02
2050 2223 2.555325 ACTGTCGTTGTATCTCGGTCAA 59.445 45.455 0.00 0.00 0.00 3.18
2051 2224 2.156917 ACTGTCGTTGTATCTCGGTCA 58.843 47.619 0.00 0.00 0.00 4.02
2052 2225 2.915738 ACTGTCGTTGTATCTCGGTC 57.084 50.000 0.00 0.00 0.00 4.79
2053 2226 4.022935 TGTTTACTGTCGTTGTATCTCGGT 60.023 41.667 0.00 0.00 0.00 4.69
2054 2227 4.478699 TGTTTACTGTCGTTGTATCTCGG 58.521 43.478 0.00 0.00 0.00 4.63
2055 2228 6.744082 TGTATGTTTACTGTCGTTGTATCTCG 59.256 38.462 0.00 0.00 0.00 4.04
2056 2229 8.532341 CATGTATGTTTACTGTCGTTGTATCTC 58.468 37.037 0.00 0.00 0.00 2.75
2057 2230 7.491372 CCATGTATGTTTACTGTCGTTGTATCT 59.509 37.037 0.00 0.00 0.00 1.98
2058 2231 7.277098 ACCATGTATGTTTACTGTCGTTGTATC 59.723 37.037 0.00 0.00 0.00 2.24
2059 2232 7.064134 CACCATGTATGTTTACTGTCGTTGTAT 59.936 37.037 0.00 0.00 0.00 2.29
2060 2233 6.366604 CACCATGTATGTTTACTGTCGTTGTA 59.633 38.462 0.00 0.00 0.00 2.41
2061 2234 5.178623 CACCATGTATGTTTACTGTCGTTGT 59.821 40.000 0.00 0.00 0.00 3.32
2062 2235 5.178623 ACACCATGTATGTTTACTGTCGTTG 59.821 40.000 0.00 0.00 0.00 4.10
2063 2236 5.302360 ACACCATGTATGTTTACTGTCGTT 58.698 37.500 0.00 0.00 0.00 3.85
2064 2237 4.890088 ACACCATGTATGTTTACTGTCGT 58.110 39.130 0.00 0.00 0.00 4.34
2079 2252 6.467682 CGGTTATTTCGAAAACATACACCATG 59.532 38.462 15.66 0.73 40.78 3.66
2080 2253 6.149807 ACGGTTATTTCGAAAACATACACCAT 59.850 34.615 15.66 0.97 0.00 3.55
2081 2254 5.469421 ACGGTTATTTCGAAAACATACACCA 59.531 36.000 15.66 0.00 0.00 4.17
2082 2255 5.791480 CACGGTTATTTCGAAAACATACACC 59.209 40.000 15.66 12.61 0.00 4.16
2083 2256 6.365050 ACACGGTTATTTCGAAAACATACAC 58.635 36.000 15.66 5.47 0.00 2.90
2084 2257 6.202379 TGACACGGTTATTTCGAAAACATACA 59.798 34.615 15.66 4.40 0.00 2.29
2085 2258 6.517374 GTGACACGGTTATTTCGAAAACATAC 59.483 38.462 15.66 10.01 0.00 2.39
2086 2259 6.347563 GGTGACACGGTTATTTCGAAAACATA 60.348 38.462 15.66 0.00 0.00 2.29
2087 2260 5.445845 GTGACACGGTTATTTCGAAAACAT 58.554 37.500 15.66 0.77 0.00 2.71
2088 2261 4.260702 GGTGACACGGTTATTTCGAAAACA 60.261 41.667 15.66 2.94 0.00 2.83
2089 2262 4.024641 AGGTGACACGGTTATTTCGAAAAC 60.025 41.667 15.66 9.39 0.00 2.43
2090 2263 4.128643 AGGTGACACGGTTATTTCGAAAA 58.871 39.130 15.66 1.71 0.00 2.29
2091 2264 3.731089 AGGTGACACGGTTATTTCGAAA 58.269 40.909 13.91 13.91 0.00 3.46
2092 2265 3.006110 AGAGGTGACACGGTTATTTCGAA 59.994 43.478 0.00 0.00 0.00 3.71
2093 2266 2.559668 AGAGGTGACACGGTTATTTCGA 59.440 45.455 0.00 0.00 0.00 3.71
2094 2267 2.955614 AGAGGTGACACGGTTATTTCG 58.044 47.619 0.00 0.00 0.00 3.46
2095 2268 5.657474 TGATAGAGGTGACACGGTTATTTC 58.343 41.667 0.00 0.00 0.00 2.17
2096 2269 5.670792 TGATAGAGGTGACACGGTTATTT 57.329 39.130 0.00 0.00 0.00 1.40
2097 2270 5.598830 AGATGATAGAGGTGACACGGTTATT 59.401 40.000 0.00 0.00 0.00 1.40
2098 2271 5.141182 AGATGATAGAGGTGACACGGTTAT 58.859 41.667 0.00 0.00 0.00 1.89
2099 2272 4.533815 AGATGATAGAGGTGACACGGTTA 58.466 43.478 0.00 0.00 0.00 2.85
2100 2273 3.366396 AGATGATAGAGGTGACACGGTT 58.634 45.455 0.00 0.00 0.00 4.44
2101 2274 2.952978 GAGATGATAGAGGTGACACGGT 59.047 50.000 0.00 0.00 0.00 4.83
2102 2275 3.218453 AGAGATGATAGAGGTGACACGG 58.782 50.000 0.00 0.00 0.00 4.94
2103 2276 5.703130 TCATAGAGATGATAGAGGTGACACG 59.297 44.000 0.00 0.00 37.15 4.49
2104 2277 6.939730 TCTCATAGAGATGATAGAGGTGACAC 59.060 42.308 0.00 0.00 41.33 3.67
2105 2278 7.084268 TCTCATAGAGATGATAGAGGTGACA 57.916 40.000 0.00 0.00 41.33 3.58
2106 2279 7.994425 TTCTCATAGAGATGATAGAGGTGAC 57.006 40.000 0.00 0.00 41.33 3.67
2107 2280 8.855110 GTTTTCTCATAGAGATGATAGAGGTGA 58.145 37.037 0.00 0.00 41.33 4.02
2108 2281 8.637099 TGTTTTCTCATAGAGATGATAGAGGTG 58.363 37.037 0.00 0.00 41.33 4.00
2109 2282 8.774546 TGTTTTCTCATAGAGATGATAGAGGT 57.225 34.615 0.00 0.00 41.33 3.85
2115 2288 9.979578 GACACTATGTTTTCTCATAGAGATGAT 57.020 33.333 17.02 0.00 45.76 2.45
2116 2289 8.131731 CGACACTATGTTTTCTCATAGAGATGA 58.868 37.037 17.02 0.00 45.76 2.92
2117 2290 7.380870 CCGACACTATGTTTTCTCATAGAGATG 59.619 40.741 17.02 9.62 45.76 2.90
2118 2291 7.429633 CCGACACTATGTTTTCTCATAGAGAT 58.570 38.462 17.02 5.31 45.76 2.75
2119 2292 6.680625 GCCGACACTATGTTTTCTCATAGAGA 60.681 42.308 17.02 0.00 45.76 3.10
2120 2293 5.460419 GCCGACACTATGTTTTCTCATAGAG 59.540 44.000 17.02 12.71 45.76 2.43
2121 2294 5.348986 GCCGACACTATGTTTTCTCATAGA 58.651 41.667 17.02 0.00 45.76 1.98
2123 2296 4.109766 CGCCGACACTATGTTTTCTCATA 58.890 43.478 0.00 0.00 0.00 2.15
2124 2297 2.930040 CGCCGACACTATGTTTTCTCAT 59.070 45.455 0.00 0.00 0.00 2.90
2125 2298 2.288579 ACGCCGACACTATGTTTTCTCA 60.289 45.455 0.00 0.00 0.00 3.27
2126 2299 2.334838 ACGCCGACACTATGTTTTCTC 58.665 47.619 0.00 0.00 0.00 2.87
2127 2300 2.450609 ACGCCGACACTATGTTTTCT 57.549 45.000 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.