Multiple sequence alignment - TraesCS6B01G191700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G191700 chr6B 100.000 2310 0 0 1 2310 225874703 225877012 0.000000e+00 4266.0
1 TraesCS6B01G191700 chr6B 86.364 88 11 1 1 88 7817987 7818073 6.790000e-16 95.3
2 TraesCS6B01G191700 chr6D 93.249 1733 70 18 595 2310 126876311 126878013 0.000000e+00 2508.0
3 TraesCS6B01G191700 chr6D 83.045 289 43 4 81 366 354537209 354537494 8.190000e-65 257.0
4 TraesCS6B01G191700 chr6D 100.000 41 0 0 569 609 126876254 126876294 2.460000e-10 76.8
5 TraesCS6B01G191700 chr6A 95.398 1521 41 13 799 2310 152031521 152030021 0.000000e+00 2394.0
6 TraesCS6B01G191700 chr6A 93.023 215 9 3 569 782 152056217 152056008 2.230000e-80 309.0
7 TraesCS6B01G191700 chr6A 82.918 281 46 2 86 366 4913609 4913887 3.810000e-63 252.0
8 TraesCS6B01G191700 chr1A 86.364 286 38 1 81 366 150859836 150860120 6.200000e-81 311.0
9 TraesCS6B01G191700 chr1A 87.805 82 10 0 1 82 359228119 359228038 1.890000e-16 97.1
10 TraesCS6B01G191700 chr4D 85.664 286 37 1 81 366 99344445 99344726 4.820000e-77 298.0
11 TraesCS6B01G191700 chr4D 89.157 83 9 0 1 83 481035251 481035333 1.130000e-18 104.0
12 TraesCS6B01G191700 chr3B 86.486 259 33 2 81 338 748774262 748774519 1.350000e-72 283.0
13 TraesCS6B01G191700 chr7A 84.643 280 39 2 87 366 725558714 725558439 2.260000e-70 276.0
14 TraesCS6B01G191700 chr7A 83.275 287 45 3 81 366 117278058 117278342 6.330000e-66 261.0
15 TraesCS6B01G191700 chr7A 87.952 83 10 0 1 83 725558836 725558754 5.250000e-17 99.0
16 TraesCS6B01G191700 chr7D 82.253 293 43 5 81 366 15226858 15226568 6.380000e-61 244.0
17 TraesCS6B01G191700 chr4A 88.614 202 22 1 83 284 300448781 300448981 6.380000e-61 244.0
18 TraesCS6B01G191700 chr5A 86.154 195 23 3 380 572 493407329 493407137 8.360000e-50 207.0
19 TraesCS6B01G191700 chr4B 82.143 252 35 6 86 331 613293444 613293197 8.360000e-50 207.0
20 TraesCS6B01G191700 chr3D 86.154 195 20 5 380 572 164996324 164996513 1.080000e-48 204.0
21 TraesCS6B01G191700 chr3D 89.024 82 9 0 1 82 271485157 271485076 4.060000e-18 102.0
22 TraesCS6B01G191700 chr2A 85.354 198 21 6 380 573 752819673 752819866 5.030000e-47 198.0
23 TraesCS6B01G191700 chr5D 84.127 189 23 6 384 569 363345248 363345064 2.360000e-40 176.0
24 TraesCS6B01G191700 chr5D 91.566 83 7 0 1 83 303811865 303811783 5.220000e-22 115.0
25 TraesCS6B01G191700 chr3A 82.297 209 31 5 374 579 609481557 609481352 2.360000e-40 176.0
26 TraesCS6B01G191700 chr5B 82.105 190 24 8 384 567 50947505 50947690 1.110000e-33 154.0
27 TraesCS6B01G191700 chr2B 82.166 157 24 3 6 158 787744947 787745103 5.180000e-27 132.0
28 TraesCS6B01G191700 chrUn 84.298 121 17 2 382 500 110654964 110655084 1.450000e-22 117.0
29 TraesCS6B01G191700 chr7B 87.952 83 10 0 1 83 743428035 743427953 5.250000e-17 99.0
30 TraesCS6B01G191700 chr1B 87.952 83 10 0 1 83 526571600 526571518 5.250000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G191700 chr6B 225874703 225877012 2309 False 4266.0 4266 100.0000 1 2310 1 chr6B.!!$F2 2309
1 TraesCS6B01G191700 chr6D 126876254 126878013 1759 False 1292.4 2508 96.6245 569 2310 2 chr6D.!!$F2 1741
2 TraesCS6B01G191700 chr6A 152030021 152031521 1500 True 2394.0 2394 95.3980 799 2310 1 chr6A.!!$R1 1511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
99 100 0.029035 GCGGTAGACATGTCGACGAT 59.971 55.0 30.12 14.56 36.30 3.73 F
154 155 0.036010 ACGGCCTCATCTTGAACCAG 60.036 55.0 0.00 0.00 0.00 4.00 F
562 563 0.039618 GGGGCCAAATCAAGTGGAGA 59.960 55.0 4.39 0.00 38.54 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1166 1200 0.745486 CAGCGGCAACCATCAGATCA 60.745 55.000 1.45 0.0 0.00 2.92 R
1195 1229 1.180456 TCTCCACCGCCACGAAGTAA 61.180 55.000 0.00 0.0 41.61 2.24 R
2016 2053 1.636003 AGGGTAAAAGAGAAGCAGGGG 59.364 52.381 0.00 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.811317 CGAAGAGCGGTGGTCAGC 60.811 66.667 0.00 0.00 36.03 4.26
34 35 3.168271 CGGTGGTCAGCGTTGATG 58.832 61.111 4.92 0.00 46.01 3.07
35 36 1.374125 CGGTGGTCAGCGTTGATGA 60.374 57.895 4.92 0.00 46.01 2.92
36 37 0.740868 CGGTGGTCAGCGTTGATGAT 60.741 55.000 4.92 0.00 46.01 2.45
37 38 0.729116 GGTGGTCAGCGTTGATGATG 59.271 55.000 4.92 0.00 35.39 3.07
38 39 1.675714 GGTGGTCAGCGTTGATGATGA 60.676 52.381 4.92 0.00 35.39 2.92
39 40 2.076100 GTGGTCAGCGTTGATGATGAA 58.924 47.619 4.92 0.00 35.82 2.57
40 41 2.094894 GTGGTCAGCGTTGATGATGAAG 59.905 50.000 4.92 0.00 35.82 3.02
41 42 2.289631 TGGTCAGCGTTGATGATGAAGT 60.290 45.455 4.92 0.00 35.82 3.01
42 43 3.056179 TGGTCAGCGTTGATGATGAAGTA 60.056 43.478 4.92 0.00 35.82 2.24
43 44 3.553511 GGTCAGCGTTGATGATGAAGTAG 59.446 47.826 4.92 0.00 35.82 2.57
44 45 3.553511 GTCAGCGTTGATGATGAAGTAGG 59.446 47.826 4.92 0.00 35.82 3.18
45 46 2.868583 CAGCGTTGATGATGAAGTAGGG 59.131 50.000 0.00 0.00 0.00 3.53
46 47 1.599542 GCGTTGATGATGAAGTAGGGC 59.400 52.381 0.00 0.00 0.00 5.19
47 48 1.860950 CGTTGATGATGAAGTAGGGCG 59.139 52.381 0.00 0.00 0.00 6.13
48 49 1.599542 GTTGATGATGAAGTAGGGCGC 59.400 52.381 0.00 0.00 0.00 6.53
49 50 0.829990 TGATGATGAAGTAGGGCGCA 59.170 50.000 10.83 0.00 0.00 6.09
50 51 1.209261 TGATGATGAAGTAGGGCGCAA 59.791 47.619 10.83 0.00 0.00 4.85
51 52 2.288666 GATGATGAAGTAGGGCGCAAA 58.711 47.619 10.83 0.00 0.00 3.68
52 53 1.737838 TGATGAAGTAGGGCGCAAAG 58.262 50.000 10.83 0.00 0.00 2.77
62 63 2.476499 GCGCAAAGCTCGACCTTC 59.524 61.111 0.30 0.00 44.04 3.46
63 64 2.029844 GCGCAAAGCTCGACCTTCT 61.030 57.895 0.30 0.00 44.04 2.85
64 65 1.960994 GCGCAAAGCTCGACCTTCTC 61.961 60.000 0.30 0.00 44.04 2.87
65 66 0.667487 CGCAAAGCTCGACCTTCTCA 60.667 55.000 0.00 0.00 0.00 3.27
66 67 1.074752 GCAAAGCTCGACCTTCTCAG 58.925 55.000 0.00 0.00 0.00 3.35
68 69 1.273606 CAAAGCTCGACCTTCTCAGGA 59.726 52.381 0.00 0.00 44.19 3.86
69 70 0.892063 AAGCTCGACCTTCTCAGGAC 59.108 55.000 0.00 0.00 44.19 3.85
70 71 0.968393 AGCTCGACCTTCTCAGGACC 60.968 60.000 0.00 0.00 44.19 4.46
71 72 1.251527 GCTCGACCTTCTCAGGACCA 61.252 60.000 0.00 0.00 44.19 4.02
72 73 1.257743 CTCGACCTTCTCAGGACCAA 58.742 55.000 0.00 0.00 44.19 3.67
73 74 0.966920 TCGACCTTCTCAGGACCAAC 59.033 55.000 0.00 0.00 44.19 3.77
74 75 0.388649 CGACCTTCTCAGGACCAACG 60.389 60.000 0.00 0.00 44.19 4.10
75 76 0.680061 GACCTTCTCAGGACCAACGT 59.320 55.000 0.00 0.00 44.19 3.99
76 77 0.680061 ACCTTCTCAGGACCAACGTC 59.320 55.000 0.00 0.00 44.19 4.34
77 78 0.388649 CCTTCTCAGGACCAACGTCG 60.389 60.000 0.00 0.00 44.19 5.12
78 79 1.006571 TTCTCAGGACCAACGTCGC 60.007 57.895 0.00 0.00 40.17 5.19
79 80 2.430382 TTCTCAGGACCAACGTCGCC 62.430 60.000 0.00 0.00 40.17 5.54
80 81 4.351938 TCAGGACCAACGTCGCCG 62.352 66.667 0.00 0.00 40.17 6.46
87 88 4.764336 CAACGTCGCCGCGGTAGA 62.764 66.667 28.70 23.18 37.70 2.59
88 89 4.766088 AACGTCGCCGCGGTAGAC 62.766 66.667 31.87 31.87 37.70 2.59
90 91 4.547905 CGTCGCCGCGGTAGACAT 62.548 66.667 36.21 0.00 34.80 3.06
91 92 2.954868 GTCGCCGCGGTAGACATG 60.955 66.667 34.51 16.44 35.19 3.21
92 93 3.445687 TCGCCGCGGTAGACATGT 61.446 61.111 28.70 0.00 0.00 3.21
93 94 2.954868 CGCCGCGGTAGACATGTC 60.955 66.667 28.70 18.47 0.00 3.06
94 95 2.954868 GCCGCGGTAGACATGTCG 60.955 66.667 28.70 10.12 34.09 4.35
95 96 2.795973 CCGCGGTAGACATGTCGA 59.204 61.111 19.50 12.58 34.09 4.20
96 97 1.585521 CCGCGGTAGACATGTCGAC 60.586 63.158 25.72 25.72 34.98 4.20
97 98 1.933041 CGCGGTAGACATGTCGACG 60.933 63.158 26.30 25.67 36.30 5.12
98 99 1.426621 GCGGTAGACATGTCGACGA 59.573 57.895 30.12 13.85 36.30 4.20
99 100 0.029035 GCGGTAGACATGTCGACGAT 59.971 55.000 30.12 14.56 36.30 3.73
100 101 1.743182 CGGTAGACATGTCGACGATG 58.257 55.000 26.30 19.71 36.30 3.84
101 102 1.597199 CGGTAGACATGTCGACGATGG 60.597 57.143 26.30 14.99 36.30 3.51
102 103 1.674441 GGTAGACATGTCGACGATGGA 59.326 52.381 26.30 11.37 36.30 3.41
103 104 2.541178 GGTAGACATGTCGACGATGGAC 60.541 54.545 26.30 18.28 36.30 4.02
104 105 0.098905 AGACATGTCGACGATGGACG 59.901 55.000 19.85 6.90 40.37 4.79
105 106 0.098200 GACATGTCGACGATGGACGA 59.902 55.000 22.98 0.00 45.77 4.20
106 107 0.098905 ACATGTCGACGATGGACGAG 59.901 55.000 22.98 0.00 45.77 4.18
107 108 1.064296 ATGTCGACGATGGACGAGC 59.936 57.895 11.62 0.00 45.77 5.03
108 109 1.654023 ATGTCGACGATGGACGAGCA 61.654 55.000 11.62 5.22 45.77 4.26
109 110 1.583967 GTCGACGATGGACGAGCAG 60.584 63.158 0.00 0.00 45.77 4.24
110 111 2.278206 CGACGATGGACGAGCAGG 60.278 66.667 0.00 0.00 45.77 4.85
111 112 2.885861 GACGATGGACGAGCAGGT 59.114 61.111 0.00 0.00 45.77 4.00
112 113 1.226717 GACGATGGACGAGCAGGTC 60.227 63.158 0.00 0.00 45.77 3.85
113 114 1.934220 GACGATGGACGAGCAGGTCA 61.934 60.000 9.05 0.00 45.77 4.02
114 115 1.215382 CGATGGACGAGCAGGTCAA 59.785 57.895 9.05 0.00 45.77 3.18
115 116 0.803768 CGATGGACGAGCAGGTCAAG 60.804 60.000 9.05 0.00 45.77 3.02
116 117 0.460987 GATGGACGAGCAGGTCAAGG 60.461 60.000 9.05 0.00 38.70 3.61
117 118 2.435059 GGACGAGCAGGTCAAGGC 60.435 66.667 9.05 0.00 38.70 4.35
118 119 2.659610 GACGAGCAGGTCAAGGCT 59.340 61.111 0.00 0.00 44.48 4.58
119 120 1.004440 GACGAGCAGGTCAAGGCTT 60.004 57.895 0.00 0.00 41.22 4.35
120 121 1.294659 GACGAGCAGGTCAAGGCTTG 61.295 60.000 21.17 21.17 45.19 4.01
121 122 2.037136 CGAGCAGGTCAAGGCTTGG 61.037 63.158 25.92 11.68 41.22 3.61
122 123 1.073897 GAGCAGGTCAAGGCTTGGT 59.926 57.895 25.92 7.50 41.22 3.67
123 124 0.324943 GAGCAGGTCAAGGCTTGGTA 59.675 55.000 25.92 5.95 41.22 3.25
124 125 0.036875 AGCAGGTCAAGGCTTGGTAC 59.963 55.000 25.92 17.44 36.92 3.34
125 126 0.036875 GCAGGTCAAGGCTTGGTACT 59.963 55.000 25.92 17.90 0.00 2.73
126 127 1.545651 GCAGGTCAAGGCTTGGTACTT 60.546 52.381 25.92 12.10 0.00 2.24
127 128 2.154462 CAGGTCAAGGCTTGGTACTTG 58.846 52.381 25.92 19.25 44.09 3.16
130 131 2.163818 TCAAGGCTTGGTACTTGACG 57.836 50.000 25.92 0.00 45.76 4.35
131 132 1.156736 CAAGGCTTGGTACTTGACGG 58.843 55.000 19.55 0.00 45.22 4.79
132 133 1.053424 AAGGCTTGGTACTTGACGGA 58.947 50.000 0.00 0.00 0.00 4.69
133 134 0.608640 AGGCTTGGTACTTGACGGAG 59.391 55.000 0.00 0.00 0.00 4.63
134 135 1.019805 GGCTTGGTACTTGACGGAGC 61.020 60.000 0.00 0.00 36.45 4.70
135 136 0.320421 GCTTGGTACTTGACGGAGCA 60.320 55.000 0.00 0.00 36.90 4.26
136 137 1.429463 CTTGGTACTTGACGGAGCAC 58.571 55.000 0.00 0.00 0.00 4.40
146 147 3.842923 CGGAGCACGGCCTCATCT 61.843 66.667 0.00 0.00 39.42 2.90
147 148 2.586792 GGAGCACGGCCTCATCTT 59.413 61.111 0.00 0.00 33.47 2.40
148 149 1.817099 GGAGCACGGCCTCATCTTG 60.817 63.158 0.00 0.00 33.47 3.02
149 150 1.219124 GAGCACGGCCTCATCTTGA 59.781 57.895 0.00 0.00 0.00 3.02
150 151 0.391661 GAGCACGGCCTCATCTTGAA 60.392 55.000 0.00 0.00 0.00 2.69
151 152 0.674895 AGCACGGCCTCATCTTGAAC 60.675 55.000 0.00 0.00 0.00 3.18
152 153 1.648467 GCACGGCCTCATCTTGAACC 61.648 60.000 0.00 0.00 0.00 3.62
153 154 0.321564 CACGGCCTCATCTTGAACCA 60.322 55.000 0.00 0.00 0.00 3.67
154 155 0.036010 ACGGCCTCATCTTGAACCAG 60.036 55.000 0.00 0.00 0.00 4.00
155 156 0.250234 CGGCCTCATCTTGAACCAGA 59.750 55.000 0.00 0.00 0.00 3.86
156 157 1.134280 CGGCCTCATCTTGAACCAGAT 60.134 52.381 0.00 0.00 33.44 2.90
158 159 1.674962 GCCTCATCTTGAACCAGATGC 59.325 52.381 9.93 0.00 46.88 3.91
159 160 2.295885 CCTCATCTTGAACCAGATGCC 58.704 52.381 9.93 0.00 46.88 4.40
160 161 2.295885 CTCATCTTGAACCAGATGCCC 58.704 52.381 9.93 0.00 46.88 5.36
161 162 1.019673 CATCTTGAACCAGATGCCCG 58.980 55.000 3.59 0.00 42.89 6.13
162 163 0.107017 ATCTTGAACCAGATGCCCGG 60.107 55.000 0.00 0.00 31.88 5.73
163 164 1.750399 CTTGAACCAGATGCCCGGG 60.750 63.158 19.09 19.09 36.11 5.73
164 165 3.936772 TTGAACCAGATGCCCGGGC 62.937 63.158 39.40 39.40 42.35 6.13
185 186 2.795973 CGTCGACCACCGCATCTA 59.204 61.111 10.58 0.00 38.37 1.98
186 187 1.585521 CGTCGACCACCGCATCTAC 60.586 63.158 10.58 0.00 38.37 2.59
187 188 1.585521 GTCGACCACCGCATCTACG 60.586 63.158 3.51 0.00 38.37 3.51
188 189 2.954868 CGACCACCGCATCTACGC 60.955 66.667 0.00 0.00 0.00 4.42
189 190 2.585247 GACCACCGCATCTACGCC 60.585 66.667 0.00 0.00 0.00 5.68
190 191 4.157120 ACCACCGCATCTACGCCC 62.157 66.667 0.00 0.00 0.00 6.13
191 192 4.155733 CCACCGCATCTACGCCCA 62.156 66.667 0.00 0.00 0.00 5.36
192 193 2.890474 CACCGCATCTACGCCCAC 60.890 66.667 0.00 0.00 0.00 4.61
197 198 4.201679 CATCTACGCCCACGCCGA 62.202 66.667 0.00 0.00 45.53 5.54
198 199 4.203076 ATCTACGCCCACGCCGAC 62.203 66.667 0.00 0.00 45.53 4.79
211 212 3.853330 CCGACAGCAACGCCGATG 61.853 66.667 0.00 0.00 0.00 3.84
212 213 4.505217 CGACAGCAACGCCGATGC 62.505 66.667 11.70 11.70 44.15 3.91
213 214 4.166011 GACAGCAACGCCGATGCC 62.166 66.667 15.98 0.00 44.91 4.40
225 226 4.247380 GATGCCCAGGCCCGAGAG 62.247 72.222 6.14 0.00 41.09 3.20
226 227 4.804420 ATGCCCAGGCCCGAGAGA 62.804 66.667 6.14 0.00 41.09 3.10
227 228 4.804420 TGCCCAGGCCCGAGAGAT 62.804 66.667 6.14 0.00 41.09 2.75
228 229 4.247380 GCCCAGGCCCGAGAGATG 62.247 72.222 0.00 0.00 34.56 2.90
229 230 2.444706 CCCAGGCCCGAGAGATGA 60.445 66.667 0.00 0.00 0.00 2.92
230 231 2.066393 CCCAGGCCCGAGAGATGAA 61.066 63.158 0.00 0.00 0.00 2.57
231 232 1.445095 CCAGGCCCGAGAGATGAAG 59.555 63.158 0.00 0.00 0.00 3.02
232 233 1.227497 CAGGCCCGAGAGATGAAGC 60.227 63.158 0.00 0.00 0.00 3.86
233 234 1.687146 AGGCCCGAGAGATGAAGCA 60.687 57.895 0.00 0.00 0.00 3.91
234 235 1.227497 GGCCCGAGAGATGAAGCAG 60.227 63.158 0.00 0.00 0.00 4.24
235 236 1.519719 GCCCGAGAGATGAAGCAGT 59.480 57.895 0.00 0.00 0.00 4.40
236 237 0.809241 GCCCGAGAGATGAAGCAGTG 60.809 60.000 0.00 0.00 0.00 3.66
237 238 0.809241 CCCGAGAGATGAAGCAGTGC 60.809 60.000 7.13 7.13 0.00 4.40
238 239 0.809241 CCGAGAGATGAAGCAGTGCC 60.809 60.000 12.58 0.00 0.00 5.01
239 240 1.144565 CGAGAGATGAAGCAGTGCCG 61.145 60.000 12.58 0.37 0.00 5.69
240 241 0.174389 GAGAGATGAAGCAGTGCCGA 59.826 55.000 12.58 0.00 0.00 5.54
241 242 0.829333 AGAGATGAAGCAGTGCCGAT 59.171 50.000 12.58 0.62 0.00 4.18
242 243 0.935898 GAGATGAAGCAGTGCCGATG 59.064 55.000 12.58 0.00 0.00 3.84
243 244 1.094073 AGATGAAGCAGTGCCGATGC 61.094 55.000 12.58 0.00 44.18 3.91
244 245 2.056481 GATGAAGCAGTGCCGATGCC 62.056 60.000 12.58 0.00 44.97 4.40
245 246 3.869272 GAAGCAGTGCCGATGCCG 61.869 66.667 12.58 0.00 44.97 5.69
246 247 4.393155 AAGCAGTGCCGATGCCGA 62.393 61.111 12.58 0.00 44.97 5.54
249 250 4.758251 CAGTGCCGATGCCGACCA 62.758 66.667 0.00 0.00 38.22 4.02
250 251 4.760047 AGTGCCGATGCCGACCAC 62.760 66.667 0.00 0.00 37.77 4.16
265 266 4.007644 CACCAGCCCGAGCACAGA 62.008 66.667 0.00 0.00 43.56 3.41
266 267 3.241530 ACCAGCCCGAGCACAGAA 61.242 61.111 0.00 0.00 43.56 3.02
267 268 2.435586 CCAGCCCGAGCACAGAAG 60.436 66.667 0.00 0.00 43.56 2.85
268 269 3.123620 CAGCCCGAGCACAGAAGC 61.124 66.667 0.00 0.00 43.56 3.86
269 270 4.400961 AGCCCGAGCACAGAAGCC 62.401 66.667 0.00 0.00 43.56 4.35
270 271 4.704833 GCCCGAGCACAGAAGCCA 62.705 66.667 0.00 0.00 39.53 4.75
271 272 2.743928 CCCGAGCACAGAAGCCAC 60.744 66.667 0.00 0.00 34.23 5.01
272 273 3.114616 CCGAGCACAGAAGCCACG 61.115 66.667 0.00 0.00 35.62 4.94
273 274 3.782244 CGAGCACAGAAGCCACGC 61.782 66.667 0.00 0.00 34.23 5.34
274 275 3.782244 GAGCACAGAAGCCACGCG 61.782 66.667 3.53 3.53 34.23 6.01
277 278 3.414700 CACAGAAGCCACGCGGAC 61.415 66.667 12.47 0.00 0.00 4.79
291 292 2.181021 GGACGCCGAGTACACCTG 59.819 66.667 0.00 0.00 32.59 4.00
292 293 2.506438 GACGCCGAGTACACCTGC 60.506 66.667 0.00 0.00 0.00 4.85
294 295 4.415332 CGCCGAGTACACCTGCGT 62.415 66.667 13.12 0.00 40.33 5.24
295 296 2.506438 GCCGAGTACACCTGCGTC 60.506 66.667 0.00 0.00 0.00 5.19
296 297 2.181021 CCGAGTACACCTGCGTCC 59.819 66.667 0.00 0.00 0.00 4.79
297 298 2.632544 CCGAGTACACCTGCGTCCA 61.633 63.158 0.00 0.00 0.00 4.02
298 299 1.443872 CGAGTACACCTGCGTCCAC 60.444 63.158 0.00 0.00 0.00 4.02
299 300 1.443872 GAGTACACCTGCGTCCACG 60.444 63.158 0.00 0.00 43.27 4.94
324 325 4.033776 CGGCCAGTCCCACACCAT 62.034 66.667 2.24 0.00 0.00 3.55
325 326 2.665089 CGGCCAGTCCCACACCATA 61.665 63.158 2.24 0.00 0.00 2.74
326 327 1.224592 GGCCAGTCCCACACCATAG 59.775 63.158 0.00 0.00 0.00 2.23
327 328 1.224592 GCCAGTCCCACACCATAGG 59.775 63.158 0.00 0.00 0.00 2.57
328 329 1.271840 GCCAGTCCCACACCATAGGA 61.272 60.000 0.00 0.00 0.00 2.94
329 330 0.833287 CCAGTCCCACACCATAGGAG 59.167 60.000 0.00 0.00 0.00 3.69
330 331 0.179000 CAGTCCCACACCATAGGAGC 59.821 60.000 0.00 0.00 0.00 4.70
331 332 0.983378 AGTCCCACACCATAGGAGCC 60.983 60.000 0.00 0.00 0.00 4.70
332 333 1.692749 TCCCACACCATAGGAGCCC 60.693 63.158 0.00 0.00 0.00 5.19
333 334 2.505982 CCACACCATAGGAGCCCG 59.494 66.667 0.00 0.00 0.00 6.13
334 335 2.203070 CACACCATAGGAGCCCGC 60.203 66.667 0.00 0.00 0.00 6.13
335 336 3.849951 ACACCATAGGAGCCCGCG 61.850 66.667 0.00 0.00 0.00 6.46
336 337 3.849951 CACCATAGGAGCCCGCGT 61.850 66.667 4.92 0.00 0.00 6.01
337 338 3.081409 ACCATAGGAGCCCGCGTT 61.081 61.111 4.92 0.00 0.00 4.84
338 339 2.189521 CCATAGGAGCCCGCGTTT 59.810 61.111 4.92 0.00 0.00 3.60
339 340 1.451387 CCATAGGAGCCCGCGTTTT 60.451 57.895 4.92 0.00 0.00 2.43
340 341 1.436983 CCATAGGAGCCCGCGTTTTC 61.437 60.000 4.92 0.00 0.00 2.29
341 342 0.742990 CATAGGAGCCCGCGTTTTCA 60.743 55.000 4.92 0.00 0.00 2.69
342 343 0.180406 ATAGGAGCCCGCGTTTTCAT 59.820 50.000 4.92 0.00 0.00 2.57
343 344 0.742990 TAGGAGCCCGCGTTTTCATG 60.743 55.000 4.92 0.00 0.00 3.07
344 345 2.202479 GAGCCCGCGTTTTCATGC 60.202 61.111 4.92 0.00 0.00 4.06
345 346 2.976840 GAGCCCGCGTTTTCATGCA 61.977 57.895 4.92 0.00 34.13 3.96
346 347 2.181525 GCCCGCGTTTTCATGCAT 59.818 55.556 4.92 0.00 34.13 3.96
347 348 1.445926 GCCCGCGTTTTCATGCATT 60.446 52.632 4.92 0.00 34.13 3.56
348 349 1.013524 GCCCGCGTTTTCATGCATTT 61.014 50.000 4.92 0.00 34.13 2.32
349 350 0.991344 CCCGCGTTTTCATGCATTTC 59.009 50.000 4.92 0.00 34.13 2.17
350 351 0.634731 CCGCGTTTTCATGCATTTCG 59.365 50.000 4.92 0.00 34.13 3.46
351 352 1.326576 CGCGTTTTCATGCATTTCGT 58.673 45.000 0.00 0.00 34.13 3.85
352 353 1.056169 CGCGTTTTCATGCATTTCGTG 59.944 47.619 0.00 0.86 34.13 4.35
353 354 2.050691 GCGTTTTCATGCATTTCGTGT 58.949 42.857 0.00 0.00 34.70 4.49
354 355 2.088969 GCGTTTTCATGCATTTCGTGTC 59.911 45.455 0.00 0.00 34.70 3.67
355 356 3.554524 CGTTTTCATGCATTTCGTGTCT 58.445 40.909 0.00 0.00 33.44 3.41
356 357 4.707563 CGTTTTCATGCATTTCGTGTCTA 58.292 39.130 0.00 0.00 33.44 2.59
357 358 5.323900 CGTTTTCATGCATTTCGTGTCTAT 58.676 37.500 0.00 0.00 33.44 1.98
358 359 5.225743 CGTTTTCATGCATTTCGTGTCTATG 59.774 40.000 0.00 0.00 33.44 2.23
359 360 5.878332 TTTCATGCATTTCGTGTCTATGT 57.122 34.783 0.00 0.00 33.44 2.29
360 361 5.878332 TTCATGCATTTCGTGTCTATGTT 57.122 34.783 0.00 0.00 33.44 2.71
361 362 5.878332 TCATGCATTTCGTGTCTATGTTT 57.122 34.783 0.00 0.00 33.44 2.83
362 363 5.868257 TCATGCATTTCGTGTCTATGTTTC 58.132 37.500 0.00 0.00 33.44 2.78
363 364 4.678509 TGCATTTCGTGTCTATGTTTCC 57.321 40.909 0.00 0.00 0.00 3.13
364 365 4.323417 TGCATTTCGTGTCTATGTTTCCT 58.677 39.130 0.00 0.00 0.00 3.36
365 366 4.759693 TGCATTTCGTGTCTATGTTTCCTT 59.240 37.500 0.00 0.00 0.00 3.36
366 367 5.240623 TGCATTTCGTGTCTATGTTTCCTTT 59.759 36.000 0.00 0.00 0.00 3.11
367 368 5.569059 GCATTTCGTGTCTATGTTTCCTTTG 59.431 40.000 0.00 0.00 0.00 2.77
368 369 5.682943 TTTCGTGTCTATGTTTCCTTTGG 57.317 39.130 0.00 0.00 0.00 3.28
369 370 4.345859 TCGTGTCTATGTTTCCTTTGGT 57.654 40.909 0.00 0.00 0.00 3.67
370 371 4.062293 TCGTGTCTATGTTTCCTTTGGTG 58.938 43.478 0.00 0.00 0.00 4.17
371 372 4.062293 CGTGTCTATGTTTCCTTTGGTGA 58.938 43.478 0.00 0.00 0.00 4.02
372 373 4.513692 CGTGTCTATGTTTCCTTTGGTGAA 59.486 41.667 0.00 0.00 0.00 3.18
373 374 5.560183 CGTGTCTATGTTTCCTTTGGTGAAC 60.560 44.000 0.00 0.00 0.00 3.18
374 375 5.531287 GTGTCTATGTTTCCTTTGGTGAACT 59.469 40.000 0.00 0.00 0.00 3.01
375 376 5.530915 TGTCTATGTTTCCTTTGGTGAACTG 59.469 40.000 0.00 0.00 0.00 3.16
376 377 5.531287 GTCTATGTTTCCTTTGGTGAACTGT 59.469 40.000 0.00 0.00 0.00 3.55
377 378 4.654091 ATGTTTCCTTTGGTGAACTGTG 57.346 40.909 0.00 0.00 0.00 3.66
378 379 3.426615 TGTTTCCTTTGGTGAACTGTGT 58.573 40.909 0.00 0.00 0.00 3.72
379 380 4.590918 TGTTTCCTTTGGTGAACTGTGTA 58.409 39.130 0.00 0.00 0.00 2.90
380 381 5.197451 TGTTTCCTTTGGTGAACTGTGTAT 58.803 37.500 0.00 0.00 0.00 2.29
381 382 5.067153 TGTTTCCTTTGGTGAACTGTGTATG 59.933 40.000 0.00 0.00 0.00 2.39
382 383 4.698201 TCCTTTGGTGAACTGTGTATGA 57.302 40.909 0.00 0.00 0.00 2.15
383 384 5.241403 TCCTTTGGTGAACTGTGTATGAT 57.759 39.130 0.00 0.00 0.00 2.45
384 385 5.003160 TCCTTTGGTGAACTGTGTATGATG 58.997 41.667 0.00 0.00 0.00 3.07
385 386 5.003160 CCTTTGGTGAACTGTGTATGATGA 58.997 41.667 0.00 0.00 0.00 2.92
386 387 5.649395 CCTTTGGTGAACTGTGTATGATGAT 59.351 40.000 0.00 0.00 0.00 2.45
387 388 6.183360 CCTTTGGTGAACTGTGTATGATGATC 60.183 42.308 0.00 0.00 0.00 2.92
388 389 4.432712 TGGTGAACTGTGTATGATGATCG 58.567 43.478 0.00 0.00 0.00 3.69
389 390 3.246226 GGTGAACTGTGTATGATGATCGC 59.754 47.826 0.00 0.00 0.00 4.58
390 391 4.115516 GTGAACTGTGTATGATGATCGCT 58.884 43.478 0.00 0.00 0.00 4.93
391 392 4.026228 GTGAACTGTGTATGATGATCGCTG 60.026 45.833 0.00 0.00 0.00 5.18
392 393 4.142182 TGAACTGTGTATGATGATCGCTGA 60.142 41.667 0.00 0.00 0.00 4.26
393 394 4.391405 ACTGTGTATGATGATCGCTGAA 57.609 40.909 0.00 0.00 0.00 3.02
394 395 4.115516 ACTGTGTATGATGATCGCTGAAC 58.884 43.478 0.00 0.00 0.00 3.18
395 396 4.142071 ACTGTGTATGATGATCGCTGAACT 60.142 41.667 0.00 0.00 0.00 3.01
396 397 4.758688 TGTGTATGATGATCGCTGAACTT 58.241 39.130 0.00 0.00 0.00 2.66
397 398 4.567959 TGTGTATGATGATCGCTGAACTTG 59.432 41.667 0.00 0.00 0.00 3.16
398 399 4.568359 GTGTATGATGATCGCTGAACTTGT 59.432 41.667 0.00 0.00 0.00 3.16
399 400 4.567959 TGTATGATGATCGCTGAACTTGTG 59.432 41.667 0.00 0.00 0.00 3.33
400 401 2.349590 TGATGATCGCTGAACTTGTGG 58.650 47.619 0.00 0.00 0.00 4.17
401 402 1.063174 GATGATCGCTGAACTTGTGGC 59.937 52.381 0.00 0.00 0.00 5.01
403 404 1.291877 GATCGCTGAACTTGTGGCGT 61.292 55.000 0.00 0.00 46.37 5.68
404 405 0.884704 ATCGCTGAACTTGTGGCGTT 60.885 50.000 0.00 0.00 46.37 4.84
405 406 1.092921 TCGCTGAACTTGTGGCGTTT 61.093 50.000 0.00 0.00 46.37 3.60
406 407 0.248458 CGCTGAACTTGTGGCGTTTT 60.248 50.000 0.00 0.00 42.23 2.43
407 408 1.797348 CGCTGAACTTGTGGCGTTTTT 60.797 47.619 0.00 0.00 42.23 1.94
421 422 3.956377 TTTTTGGGCAGCGGGAAA 58.044 50.000 0.00 0.00 0.00 3.13
422 423 1.745264 TTTTTGGGCAGCGGGAAAG 59.255 52.632 0.00 0.00 0.00 2.62
423 424 0.757188 TTTTTGGGCAGCGGGAAAGA 60.757 50.000 0.00 0.00 0.00 2.52
424 425 1.460273 TTTTGGGCAGCGGGAAAGAC 61.460 55.000 0.00 0.00 0.00 3.01
425 426 2.632602 TTTGGGCAGCGGGAAAGACA 62.633 55.000 0.00 0.00 0.00 3.41
426 427 2.282180 GGGCAGCGGGAAAGACAA 60.282 61.111 0.00 0.00 0.00 3.18
427 428 2.335712 GGGCAGCGGGAAAGACAAG 61.336 63.158 0.00 0.00 0.00 3.16
428 429 1.302511 GGCAGCGGGAAAGACAAGA 60.303 57.895 0.00 0.00 0.00 3.02
429 430 0.678048 GGCAGCGGGAAAGACAAGAT 60.678 55.000 0.00 0.00 0.00 2.40
430 431 1.168714 GCAGCGGGAAAGACAAGATT 58.831 50.000 0.00 0.00 0.00 2.40
431 432 1.135575 GCAGCGGGAAAGACAAGATTG 60.136 52.381 0.00 0.00 0.00 2.67
432 433 2.426522 CAGCGGGAAAGACAAGATTGA 58.573 47.619 0.00 0.00 0.00 2.57
433 434 3.012518 CAGCGGGAAAGACAAGATTGAT 58.987 45.455 0.00 0.00 0.00 2.57
434 435 3.441572 CAGCGGGAAAGACAAGATTGATT 59.558 43.478 0.00 0.00 0.00 2.57
435 436 4.082125 AGCGGGAAAGACAAGATTGATTT 58.918 39.130 0.00 0.52 0.00 2.17
436 437 4.524328 AGCGGGAAAGACAAGATTGATTTT 59.476 37.500 0.00 0.00 0.00 1.82
437 438 5.011023 AGCGGGAAAGACAAGATTGATTTTT 59.989 36.000 0.00 0.00 0.00 1.94
452 453 1.458588 TTTTTGGGTGTCTGGGGGC 60.459 57.895 0.00 0.00 0.00 5.80
453 454 2.956077 TTTTTGGGTGTCTGGGGGCC 62.956 60.000 0.00 0.00 0.00 5.80
457 458 3.961414 GGTGTCTGGGGGCCGAAA 61.961 66.667 0.00 0.00 0.00 3.46
458 459 2.671963 GTGTCTGGGGGCCGAAAC 60.672 66.667 0.00 0.00 0.00 2.78
459 460 3.961414 TGTCTGGGGGCCGAAACC 61.961 66.667 0.00 0.00 0.00 3.27
460 461 3.647771 GTCTGGGGGCCGAAACCT 61.648 66.667 0.00 0.00 0.00 3.50
461 462 3.646715 TCTGGGGGCCGAAACCTG 61.647 66.667 0.00 0.66 0.00 4.00
462 463 3.646715 CTGGGGGCCGAAACCTGA 61.647 66.667 0.00 0.00 0.00 3.86
463 464 3.628646 CTGGGGGCCGAAACCTGAG 62.629 68.421 0.00 0.00 0.00 3.35
464 465 4.426313 GGGGGCCGAAACCTGAGG 62.426 72.222 0.00 0.00 0.00 3.86
465 466 4.426313 GGGGCCGAAACCTGAGGG 62.426 72.222 2.38 0.00 38.88 4.30
483 484 4.514577 CGCGGCTGGGAACTCGAT 62.515 66.667 2.84 0.00 0.00 3.59
484 485 2.586357 GCGGCTGGGAACTCGATC 60.586 66.667 0.00 0.00 0.00 3.69
485 486 2.278857 CGGCTGGGAACTCGATCG 60.279 66.667 9.36 9.36 0.00 3.69
486 487 2.586357 GGCTGGGAACTCGATCGC 60.586 66.667 11.09 0.00 0.00 4.58
487 488 2.586357 GCTGGGAACTCGATCGCC 60.586 66.667 11.09 5.52 0.00 5.54
488 489 2.107141 CTGGGAACTCGATCGCCC 59.893 66.667 18.54 18.54 41.08 6.13
490 491 2.107141 GGGAACTCGATCGCCCAG 59.893 66.667 19.95 11.40 40.39 4.45
491 492 2.107141 GGAACTCGATCGCCCAGG 59.893 66.667 11.09 0.53 0.00 4.45
492 493 2.107141 GAACTCGATCGCCCAGGG 59.893 66.667 11.09 0.00 0.00 4.45
493 494 4.162690 AACTCGATCGCCCAGGGC 62.163 66.667 22.33 22.33 46.75 5.19
502 503 4.910956 GCCCAGGGCGAAAAATTC 57.089 55.556 17.05 0.00 39.62 2.17
510 511 3.362838 CGAAAAATTCGCTGGCGC 58.637 55.556 10.28 0.00 46.97 6.53
511 512 1.441849 CGAAAAATTCGCTGGCGCA 60.442 52.632 10.83 0.00 46.97 6.09
512 513 1.001240 CGAAAAATTCGCTGGCGCAA 61.001 50.000 10.83 0.00 46.97 4.85
513 514 1.135867 GAAAAATTCGCTGGCGCAAA 58.864 45.000 10.83 0.87 39.59 3.68
514 515 0.858583 AAAAATTCGCTGGCGCAAAC 59.141 45.000 10.83 0.00 39.59 2.93
515 516 1.274798 AAAATTCGCTGGCGCAAACG 61.275 50.000 10.83 5.15 44.07 3.60
529 530 3.634077 CGCAAACGCAAAAACATATTCG 58.366 40.909 0.00 0.00 0.00 3.34
530 531 3.394787 GCAAACGCAAAAACATATTCGC 58.605 40.909 0.00 0.00 0.00 4.70
531 532 3.720630 GCAAACGCAAAAACATATTCGCC 60.721 43.478 0.00 0.00 0.00 5.54
532 533 1.889891 ACGCAAAAACATATTCGCCG 58.110 45.000 0.00 0.00 0.00 6.46
533 534 1.187715 CGCAAAAACATATTCGCCGG 58.812 50.000 0.00 0.00 0.00 6.13
534 535 1.555477 GCAAAAACATATTCGCCGGG 58.445 50.000 2.18 0.00 0.00 5.73
535 536 1.135228 GCAAAAACATATTCGCCGGGT 60.135 47.619 2.18 0.00 0.00 5.28
536 537 2.525055 CAAAAACATATTCGCCGGGTG 58.475 47.619 2.18 0.00 0.00 4.61
537 538 1.828979 AAAACATATTCGCCGGGTGT 58.171 45.000 2.18 0.00 0.00 4.16
538 539 1.091537 AAACATATTCGCCGGGTGTG 58.908 50.000 2.18 0.83 0.00 3.82
539 540 1.373590 AACATATTCGCCGGGTGTGC 61.374 55.000 2.18 0.00 0.00 4.57
540 541 1.523711 CATATTCGCCGGGTGTGCT 60.524 57.895 2.18 0.00 0.00 4.40
541 542 1.523711 ATATTCGCCGGGTGTGCTG 60.524 57.895 2.18 0.00 0.00 4.41
552 553 4.992740 TGTGCTGCGGGGCCAAAT 62.993 61.111 4.39 0.00 0.00 2.32
553 554 4.133796 GTGCTGCGGGGCCAAATC 62.134 66.667 4.39 0.00 0.00 2.17
554 555 4.675161 TGCTGCGGGGCCAAATCA 62.675 61.111 4.39 0.00 0.00 2.57
555 556 3.381136 GCTGCGGGGCCAAATCAA 61.381 61.111 4.39 0.00 0.00 2.57
556 557 2.887360 CTGCGGGGCCAAATCAAG 59.113 61.111 4.39 0.00 0.00 3.02
557 558 1.978617 CTGCGGGGCCAAATCAAGT 60.979 57.895 4.39 0.00 0.00 3.16
558 559 2.216750 CTGCGGGGCCAAATCAAGTG 62.217 60.000 4.39 0.00 0.00 3.16
559 560 3.005540 GCGGGGCCAAATCAAGTGG 62.006 63.158 4.39 0.00 39.33 4.00
560 561 1.304052 CGGGGCCAAATCAAGTGGA 60.304 57.895 4.39 0.00 38.54 4.02
561 562 1.315257 CGGGGCCAAATCAAGTGGAG 61.315 60.000 4.39 0.00 38.54 3.86
562 563 0.039618 GGGGCCAAATCAAGTGGAGA 59.960 55.000 4.39 0.00 38.54 3.71
563 564 1.342374 GGGGCCAAATCAAGTGGAGAT 60.342 52.381 4.39 0.00 38.54 2.75
564 565 1.753073 GGGCCAAATCAAGTGGAGATG 59.247 52.381 4.39 0.00 38.54 2.90
565 566 1.135721 GGCCAAATCAAGTGGAGATGC 59.864 52.381 0.00 0.00 38.54 3.91
566 567 2.097825 GCCAAATCAAGTGGAGATGCT 58.902 47.619 0.00 0.00 38.54 3.79
567 568 2.098770 GCCAAATCAAGTGGAGATGCTC 59.901 50.000 0.00 0.00 38.54 4.26
770 804 0.739112 GCGCCTGAGGTTGAGAAGAG 60.739 60.000 0.00 0.00 0.00 2.85
776 810 5.115480 GCCTGAGGTTGAGAAGAGATAAAG 58.885 45.833 0.00 0.00 0.00 1.85
782 816 7.401493 TGAGGTTGAGAAGAGATAAAGAAGGAT 59.599 37.037 0.00 0.00 0.00 3.24
783 817 8.156822 AGGTTGAGAAGAGATAAAGAAGGATT 57.843 34.615 0.00 0.00 0.00 3.01
784 818 8.610369 AGGTTGAGAAGAGATAAAGAAGGATTT 58.390 33.333 0.00 0.00 0.00 2.17
785 819 9.237187 GGTTGAGAAGAGATAAAGAAGGATTTT 57.763 33.333 0.00 0.00 0.00 1.82
811 845 6.699575 TTTGAGGAACAGGAAAGAAAGAAG 57.300 37.500 0.00 0.00 0.00 2.85
820 854 8.519799 AACAGGAAAGAAAGAAGTATGTCAAA 57.480 30.769 0.00 0.00 0.00 2.69
821 855 7.931275 ACAGGAAAGAAAGAAGTATGTCAAAC 58.069 34.615 0.00 0.00 0.00 2.93
823 857 8.072567 CAGGAAAGAAAGAAGTATGTCAAACTG 58.927 37.037 0.00 0.00 0.00 3.16
824 858 7.229506 AGGAAAGAAAGAAGTATGTCAAACTGG 59.770 37.037 0.00 0.00 0.00 4.00
825 859 6.884280 AAGAAAGAAGTATGTCAAACTGGG 57.116 37.500 0.00 0.00 0.00 4.45
826 860 4.762251 AGAAAGAAGTATGTCAAACTGGGC 59.238 41.667 0.00 0.00 0.00 5.36
828 862 4.373156 AGAAGTATGTCAAACTGGGCTT 57.627 40.909 0.00 0.00 0.00 4.35
829 863 5.499004 AGAAGTATGTCAAACTGGGCTTA 57.501 39.130 0.00 0.00 0.00 3.09
830 864 5.491982 AGAAGTATGTCAAACTGGGCTTAG 58.508 41.667 0.00 0.00 0.00 2.18
832 866 2.887151 ATGTCAAACTGGGCTTAGCT 57.113 45.000 3.59 0.00 0.00 3.32
833 867 2.656947 TGTCAAACTGGGCTTAGCTT 57.343 45.000 3.59 0.00 0.00 3.74
834 868 3.780804 TGTCAAACTGGGCTTAGCTTA 57.219 42.857 3.59 0.00 0.00 3.09
835 869 3.674997 TGTCAAACTGGGCTTAGCTTAG 58.325 45.455 3.59 5.49 0.00 2.18
930 964 0.109873 GTCGGTCAGTACACACGAGG 60.110 60.000 0.00 0.00 33.92 4.63
936 970 2.181021 GTACACACGAGGGGAGCG 59.819 66.667 0.00 0.00 0.00 5.03
1100 1134 3.630312 GTGAGTAAGCACCTGAACCAAAA 59.370 43.478 0.00 0.00 32.68 2.44
1114 1148 5.707495 TGAACCAAAACCCTAAACTATGGT 58.293 37.500 0.00 0.00 41.23 3.55
1186 1220 2.056481 GATCTGATGGTTGCCGCTGC 62.056 60.000 0.00 0.00 38.26 5.25
1314 1348 0.320508 GGGGAGGACGTGTGACTTTC 60.321 60.000 0.00 0.00 0.00 2.62
1556 1592 7.754924 GGAAAATTCAGATTATGCTTCGTTTCA 59.245 33.333 0.00 0.00 0.00 2.69
1649 1686 9.533253 AAAACAATGGAGTATATAAGCAAATGC 57.467 29.630 0.00 0.00 42.49 3.56
2156 2203 5.877012 CAGTGCCAGTGTATTAGATTGTCTT 59.123 40.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.811317 GCTGACCACCGCTCTTCG 60.811 66.667 0.00 0.00 38.08 3.79
11 12 2.811317 CGCTGACCACCGCTCTTC 60.811 66.667 0.00 0.00 0.00 2.87
12 13 3.165160 AACGCTGACCACCGCTCTT 62.165 57.895 0.00 0.00 0.00 2.85
13 14 3.616721 AACGCTGACCACCGCTCT 61.617 61.111 0.00 0.00 0.00 4.09
14 15 3.414700 CAACGCTGACCACCGCTC 61.415 66.667 0.00 0.00 0.00 5.03
15 16 3.240134 ATCAACGCTGACCACCGCT 62.240 57.895 0.00 0.00 33.30 5.52
16 17 2.742372 ATCAACGCTGACCACCGC 60.742 61.111 0.00 0.00 33.30 5.68
17 18 0.740868 ATCATCAACGCTGACCACCG 60.741 55.000 0.00 0.00 33.30 4.94
18 19 0.729116 CATCATCAACGCTGACCACC 59.271 55.000 0.00 0.00 33.30 4.61
19 20 1.725641 TCATCATCAACGCTGACCAC 58.274 50.000 0.00 0.00 33.30 4.16
20 21 2.289631 ACTTCATCATCAACGCTGACCA 60.290 45.455 0.00 0.00 33.30 4.02
21 22 2.350522 ACTTCATCATCAACGCTGACC 58.649 47.619 0.00 0.00 33.30 4.02
22 23 3.553511 CCTACTTCATCATCAACGCTGAC 59.446 47.826 0.00 0.00 33.30 3.51
23 24 3.430790 CCCTACTTCATCATCAACGCTGA 60.431 47.826 0.00 0.00 35.56 4.26
24 25 2.868583 CCCTACTTCATCATCAACGCTG 59.131 50.000 0.00 0.00 0.00 5.18
25 26 2.743183 GCCCTACTTCATCATCAACGCT 60.743 50.000 0.00 0.00 0.00 5.07
26 27 1.599542 GCCCTACTTCATCATCAACGC 59.400 52.381 0.00 0.00 0.00 4.84
27 28 1.860950 CGCCCTACTTCATCATCAACG 59.139 52.381 0.00 0.00 0.00 4.10
28 29 1.599542 GCGCCCTACTTCATCATCAAC 59.400 52.381 0.00 0.00 0.00 3.18
29 30 1.209261 TGCGCCCTACTTCATCATCAA 59.791 47.619 4.18 0.00 0.00 2.57
30 31 0.829990 TGCGCCCTACTTCATCATCA 59.170 50.000 4.18 0.00 0.00 3.07
31 32 1.953559 TTGCGCCCTACTTCATCATC 58.046 50.000 4.18 0.00 0.00 2.92
32 33 2.292267 CTTTGCGCCCTACTTCATCAT 58.708 47.619 4.18 0.00 0.00 2.45
33 34 1.737838 CTTTGCGCCCTACTTCATCA 58.262 50.000 4.18 0.00 0.00 3.07
34 35 0.378610 GCTTTGCGCCCTACTTCATC 59.621 55.000 4.18 0.00 0.00 2.92
35 36 0.035056 AGCTTTGCGCCCTACTTCAT 60.035 50.000 4.18 0.00 40.39 2.57
36 37 0.673644 GAGCTTTGCGCCCTACTTCA 60.674 55.000 4.18 0.00 40.39 3.02
37 38 1.696832 CGAGCTTTGCGCCCTACTTC 61.697 60.000 4.18 0.00 40.39 3.01
38 39 1.741770 CGAGCTTTGCGCCCTACTT 60.742 57.895 4.18 0.00 40.39 2.24
39 40 2.125512 CGAGCTTTGCGCCCTACT 60.126 61.111 4.18 0.00 40.39 2.57
40 41 2.125673 TCGAGCTTTGCGCCCTAC 60.126 61.111 4.18 0.00 40.39 3.18
41 42 2.125673 GTCGAGCTTTGCGCCCTA 60.126 61.111 4.18 0.00 40.39 3.53
44 45 3.028366 GAAGGTCGAGCTTTGCGCC 62.028 63.158 28.85 13.48 40.39 6.53
45 46 1.960994 GAGAAGGTCGAGCTTTGCGC 61.961 60.000 28.85 16.87 39.57 6.09
46 47 0.667487 TGAGAAGGTCGAGCTTTGCG 60.667 55.000 28.85 0.00 0.00 4.85
47 48 1.074752 CTGAGAAGGTCGAGCTTTGC 58.925 55.000 28.85 22.62 0.00 3.68
48 49 1.273606 TCCTGAGAAGGTCGAGCTTTG 59.726 52.381 28.85 18.49 0.00 2.77
49 50 1.273886 GTCCTGAGAAGGTCGAGCTTT 59.726 52.381 28.85 18.77 0.00 3.51
50 51 0.892063 GTCCTGAGAAGGTCGAGCTT 59.108 55.000 28.66 28.66 0.00 3.74
51 52 0.968393 GGTCCTGAGAAGGTCGAGCT 60.968 60.000 12.24 12.24 0.00 4.09
52 53 1.251527 TGGTCCTGAGAAGGTCGAGC 61.252 60.000 6.48 6.48 0.00 5.03
53 54 1.067495 GTTGGTCCTGAGAAGGTCGAG 60.067 57.143 0.00 0.00 0.00 4.04
54 55 0.966920 GTTGGTCCTGAGAAGGTCGA 59.033 55.000 0.00 0.00 0.00 4.20
55 56 0.388649 CGTTGGTCCTGAGAAGGTCG 60.389 60.000 0.00 0.00 0.00 4.79
56 57 0.680061 ACGTTGGTCCTGAGAAGGTC 59.320 55.000 0.00 0.00 0.00 3.85
57 58 0.680061 GACGTTGGTCCTGAGAAGGT 59.320 55.000 0.00 0.00 37.19 3.50
58 59 0.388649 CGACGTTGGTCCTGAGAAGG 60.389 60.000 0.00 0.00 40.17 3.46
59 60 1.009389 GCGACGTTGGTCCTGAGAAG 61.009 60.000 4.64 0.00 40.17 2.85
60 61 1.006571 GCGACGTTGGTCCTGAGAA 60.007 57.895 4.64 0.00 40.17 2.87
61 62 2.649034 GCGACGTTGGTCCTGAGA 59.351 61.111 4.64 0.00 40.17 3.27
62 63 2.432628 GGCGACGTTGGTCCTGAG 60.433 66.667 4.64 0.00 40.17 3.35
74 75 2.954868 CATGTCTACCGCGGCGAC 60.955 66.667 30.47 30.47 0.00 5.19
75 76 3.405592 GACATGTCTACCGCGGCGA 62.406 63.158 28.58 19.88 0.00 5.54
76 77 2.954868 GACATGTCTACCGCGGCG 60.955 66.667 28.58 17.55 0.00 6.46
77 78 2.954868 CGACATGTCTACCGCGGC 60.955 66.667 28.58 9.70 0.00 6.53
78 79 1.585521 GTCGACATGTCTACCGCGG 60.586 63.158 26.86 26.86 0.00 6.46
79 80 1.933041 CGTCGACATGTCTACCGCG 60.933 63.158 22.95 14.85 0.00 6.46
80 81 0.029035 ATCGTCGACATGTCTACCGC 59.971 55.000 22.95 7.84 0.00 5.68
81 82 1.597199 CCATCGTCGACATGTCTACCG 60.597 57.143 22.95 19.74 0.00 4.02
82 83 1.674441 TCCATCGTCGACATGTCTACC 59.326 52.381 22.95 9.75 0.00 3.18
83 84 2.717530 GTCCATCGTCGACATGTCTAC 58.282 52.381 22.95 20.41 0.00 2.59
84 85 1.329599 CGTCCATCGTCGACATGTCTA 59.670 52.381 22.95 10.26 34.52 2.59
85 86 0.098905 CGTCCATCGTCGACATGTCT 59.901 55.000 22.95 1.27 34.52 3.41
86 87 0.098200 TCGTCCATCGTCGACATGTC 59.902 55.000 16.21 16.21 40.80 3.06
87 88 0.098905 CTCGTCCATCGTCGACATGT 59.901 55.000 17.16 0.00 40.80 3.21
88 89 1.202973 GCTCGTCCATCGTCGACATG 61.203 60.000 17.16 16.67 40.80 3.21
89 90 1.064296 GCTCGTCCATCGTCGACAT 59.936 57.895 17.16 5.54 40.80 3.06
90 91 2.253414 CTGCTCGTCCATCGTCGACA 62.253 60.000 17.16 3.13 40.80 4.35
91 92 1.583967 CTGCTCGTCCATCGTCGAC 60.584 63.158 5.18 5.18 40.80 4.20
92 93 2.761195 CCTGCTCGTCCATCGTCGA 61.761 63.158 0.00 0.00 40.80 4.20
93 94 2.278206 CCTGCTCGTCCATCGTCG 60.278 66.667 0.00 0.00 40.80 5.12
94 95 1.226717 GACCTGCTCGTCCATCGTC 60.227 63.158 0.00 0.00 40.80 4.20
95 96 1.532604 TTGACCTGCTCGTCCATCGT 61.533 55.000 1.95 0.00 40.80 3.73
96 97 0.803768 CTTGACCTGCTCGTCCATCG 60.804 60.000 1.95 0.00 41.41 3.84
97 98 0.460987 CCTTGACCTGCTCGTCCATC 60.461 60.000 1.95 0.00 31.35 3.51
98 99 1.599047 CCTTGACCTGCTCGTCCAT 59.401 57.895 1.95 0.00 31.35 3.41
99 100 3.059982 CCTTGACCTGCTCGTCCA 58.940 61.111 1.95 0.00 31.35 4.02
100 101 2.435059 GCCTTGACCTGCTCGTCC 60.435 66.667 1.95 0.00 31.35 4.79
101 102 1.004440 AAGCCTTGACCTGCTCGTC 60.004 57.895 0.00 0.00 36.66 4.20
102 103 1.302033 CAAGCCTTGACCTGCTCGT 60.302 57.895 0.00 0.00 36.66 4.18
103 104 2.037136 CCAAGCCTTGACCTGCTCG 61.037 63.158 5.89 0.00 36.66 5.03
104 105 0.324943 TACCAAGCCTTGACCTGCTC 59.675 55.000 5.89 0.00 36.66 4.26
105 106 0.036875 GTACCAAGCCTTGACCTGCT 59.963 55.000 5.89 0.00 40.17 4.24
106 107 0.036875 AGTACCAAGCCTTGACCTGC 59.963 55.000 5.89 0.00 0.00 4.85
107 108 2.154462 CAAGTACCAAGCCTTGACCTG 58.846 52.381 5.89 0.00 40.36 4.00
108 109 2.054799 TCAAGTACCAAGCCTTGACCT 58.945 47.619 5.89 0.00 41.47 3.85
109 110 2.561478 TCAAGTACCAAGCCTTGACC 57.439 50.000 5.89 0.00 41.47 4.02
111 112 1.270625 CCGTCAAGTACCAAGCCTTGA 60.271 52.381 5.89 0.00 43.47 3.02
112 113 1.156736 CCGTCAAGTACCAAGCCTTG 58.843 55.000 0.00 0.00 39.50 3.61
113 114 1.002087 CTCCGTCAAGTACCAAGCCTT 59.998 52.381 0.00 0.00 0.00 4.35
114 115 0.608640 CTCCGTCAAGTACCAAGCCT 59.391 55.000 0.00 0.00 0.00 4.58
115 116 1.019805 GCTCCGTCAAGTACCAAGCC 61.020 60.000 0.00 0.00 0.00 4.35
116 117 0.320421 TGCTCCGTCAAGTACCAAGC 60.320 55.000 0.00 0.00 34.33 4.01
117 118 1.429463 GTGCTCCGTCAAGTACCAAG 58.571 55.000 0.00 0.00 0.00 3.61
118 119 0.319211 CGTGCTCCGTCAAGTACCAA 60.319 55.000 0.00 0.00 0.00 3.67
119 120 1.287815 CGTGCTCCGTCAAGTACCA 59.712 57.895 0.00 0.00 0.00 3.25
120 121 1.445582 CCGTGCTCCGTCAAGTACC 60.446 63.158 0.00 0.00 33.66 3.34
121 122 2.092882 GCCGTGCTCCGTCAAGTAC 61.093 63.158 0.00 0.00 33.66 2.73
122 123 2.260434 GCCGTGCTCCGTCAAGTA 59.740 61.111 0.00 0.00 33.66 2.24
123 124 4.681978 GGCCGTGCTCCGTCAAGT 62.682 66.667 0.00 0.00 33.66 3.16
124 125 4.379243 AGGCCGTGCTCCGTCAAG 62.379 66.667 0.00 0.00 33.66 3.02
125 126 4.373116 GAGGCCGTGCTCCGTCAA 62.373 66.667 0.00 0.00 33.66 3.18
127 128 4.148825 ATGAGGCCGTGCTCCGTC 62.149 66.667 0.00 0.00 33.66 4.79
128 129 4.148825 GATGAGGCCGTGCTCCGT 62.149 66.667 0.00 0.00 33.66 4.69
129 130 3.376935 AAGATGAGGCCGTGCTCCG 62.377 63.158 0.00 0.00 0.00 4.63
130 131 1.817099 CAAGATGAGGCCGTGCTCC 60.817 63.158 0.00 0.00 0.00 4.70
131 132 0.391661 TTCAAGATGAGGCCGTGCTC 60.392 55.000 0.00 0.00 0.00 4.26
132 133 0.674895 GTTCAAGATGAGGCCGTGCT 60.675 55.000 0.00 0.00 0.00 4.40
133 134 1.648467 GGTTCAAGATGAGGCCGTGC 61.648 60.000 0.00 0.00 0.00 5.34
134 135 0.321564 TGGTTCAAGATGAGGCCGTG 60.322 55.000 0.00 0.00 0.00 4.94
135 136 0.036010 CTGGTTCAAGATGAGGCCGT 60.036 55.000 0.00 0.00 0.00 5.68
136 137 0.250234 TCTGGTTCAAGATGAGGCCG 59.750 55.000 0.00 0.00 0.00 6.13
137 138 2.725221 ATCTGGTTCAAGATGAGGCC 57.275 50.000 0.00 0.00 35.54 5.19
143 144 0.107017 CCGGGCATCTGGTTCAAGAT 60.107 55.000 0.00 0.00 37.39 2.40
144 145 1.299648 CCGGGCATCTGGTTCAAGA 59.700 57.895 0.00 0.00 34.69 3.02
145 146 1.750399 CCCGGGCATCTGGTTCAAG 60.750 63.158 8.08 0.00 37.74 3.02
146 147 2.354729 CCCGGGCATCTGGTTCAA 59.645 61.111 8.08 0.00 37.74 2.69
147 148 4.424711 GCCCGGGCATCTGGTTCA 62.425 66.667 40.73 0.00 41.49 3.18
168 169 1.585521 GTAGATGCGGTGGTCGACG 60.586 63.158 9.92 0.00 42.43 5.12
169 170 1.585521 CGTAGATGCGGTGGTCGAC 60.586 63.158 7.13 7.13 42.43 4.20
170 171 2.795973 CGTAGATGCGGTGGTCGA 59.204 61.111 0.00 0.00 42.43 4.20
171 172 2.954868 GCGTAGATGCGGTGGTCG 60.955 66.667 0.00 0.00 42.76 4.79
172 173 2.585247 GGCGTAGATGCGGTGGTC 60.585 66.667 0.00 0.00 35.06 4.02
173 174 4.157120 GGGCGTAGATGCGGTGGT 62.157 66.667 0.00 0.00 35.06 4.16
174 175 4.155733 TGGGCGTAGATGCGGTGG 62.156 66.667 0.00 0.00 35.06 4.61
175 176 2.890474 GTGGGCGTAGATGCGGTG 60.890 66.667 0.00 0.00 35.06 4.94
176 177 4.508128 CGTGGGCGTAGATGCGGT 62.508 66.667 0.00 0.00 35.06 5.68
194 195 3.853330 CATCGGCGTTGCTGTCGG 61.853 66.667 6.85 0.00 36.18 4.79
195 196 4.505217 GCATCGGCGTTGCTGTCG 62.505 66.667 29.76 1.38 37.14 4.35
196 197 4.166011 GGCATCGGCGTTGCTGTC 62.166 66.667 33.52 18.92 42.47 3.51
208 209 4.247380 CTCTCGGGCCTGGGCATC 62.247 72.222 22.68 4.45 44.11 3.91
209 210 4.804420 TCTCTCGGGCCTGGGCAT 62.804 66.667 22.68 0.00 44.11 4.40
210 211 4.804420 ATCTCTCGGGCCTGGGCA 62.804 66.667 22.68 0.00 44.11 5.36
211 212 4.247380 CATCTCTCGGGCCTGGGC 62.247 72.222 12.87 12.58 41.06 5.36
212 213 2.037620 CTTCATCTCTCGGGCCTGGG 62.038 65.000 12.87 8.98 0.00 4.45
213 214 1.445095 CTTCATCTCTCGGGCCTGG 59.555 63.158 12.87 2.35 0.00 4.45
214 215 1.227497 GCTTCATCTCTCGGGCCTG 60.227 63.158 4.71 4.71 0.00 4.85
215 216 1.684386 CTGCTTCATCTCTCGGGCCT 61.684 60.000 0.84 0.00 0.00 5.19
216 217 1.227497 CTGCTTCATCTCTCGGGCC 60.227 63.158 0.00 0.00 0.00 5.80
217 218 0.809241 CACTGCTTCATCTCTCGGGC 60.809 60.000 0.00 0.00 0.00 6.13
218 219 0.809241 GCACTGCTTCATCTCTCGGG 60.809 60.000 0.00 0.00 0.00 5.14
219 220 0.809241 GGCACTGCTTCATCTCTCGG 60.809 60.000 0.00 0.00 0.00 4.63
220 221 1.144565 CGGCACTGCTTCATCTCTCG 61.145 60.000 0.00 0.00 0.00 4.04
221 222 0.174389 TCGGCACTGCTTCATCTCTC 59.826 55.000 0.00 0.00 0.00 3.20
222 223 0.829333 ATCGGCACTGCTTCATCTCT 59.171 50.000 0.00 0.00 0.00 3.10
223 224 0.935898 CATCGGCACTGCTTCATCTC 59.064 55.000 0.00 0.00 0.00 2.75
224 225 1.094073 GCATCGGCACTGCTTCATCT 61.094 55.000 0.00 0.00 40.72 2.90
225 226 1.354506 GCATCGGCACTGCTTCATC 59.645 57.895 0.00 0.00 40.72 2.92
226 227 2.117156 GGCATCGGCACTGCTTCAT 61.117 57.895 0.00 0.00 43.71 2.57
227 228 2.747460 GGCATCGGCACTGCTTCA 60.747 61.111 0.00 0.00 43.71 3.02
228 229 3.869272 CGGCATCGGCACTGCTTC 61.869 66.667 0.00 0.00 43.71 3.86
229 230 4.393155 TCGGCATCGGCACTGCTT 62.393 61.111 0.00 0.00 43.71 3.91
232 233 4.758251 TGGTCGGCATCGGCACTG 62.758 66.667 0.00 0.00 43.76 3.66
233 234 4.760047 GTGGTCGGCATCGGCACT 62.760 66.667 0.00 0.00 43.76 4.40
248 249 3.535629 TTCTGTGCTCGGGCTGGTG 62.536 63.158 9.62 0.00 39.59 4.17
249 250 3.241530 TTCTGTGCTCGGGCTGGT 61.242 61.111 9.62 0.00 39.59 4.00
250 251 2.435586 CTTCTGTGCTCGGGCTGG 60.436 66.667 9.62 0.00 39.59 4.85
251 252 3.123620 GCTTCTGTGCTCGGGCTG 61.124 66.667 9.62 0.00 39.59 4.85
252 253 4.400961 GGCTTCTGTGCTCGGGCT 62.401 66.667 9.62 0.00 39.59 5.19
253 254 4.704833 TGGCTTCTGTGCTCGGGC 62.705 66.667 0.00 0.00 39.26 6.13
254 255 2.743928 GTGGCTTCTGTGCTCGGG 60.744 66.667 0.00 0.00 0.00 5.14
255 256 3.114616 CGTGGCTTCTGTGCTCGG 61.115 66.667 0.00 0.00 0.00 4.63
256 257 3.782244 GCGTGGCTTCTGTGCTCG 61.782 66.667 0.00 0.00 35.17 5.03
257 258 3.782244 CGCGTGGCTTCTGTGCTC 61.782 66.667 0.00 0.00 0.00 4.26
260 261 3.414700 GTCCGCGTGGCTTCTGTG 61.415 66.667 11.05 0.00 34.14 3.66
274 275 2.181021 CAGGTGTACTCGGCGTCC 59.819 66.667 6.85 1.57 0.00 4.79
275 276 2.506438 GCAGGTGTACTCGGCGTC 60.506 66.667 6.85 0.00 0.00 5.19
276 277 4.415332 CGCAGGTGTACTCGGCGT 62.415 66.667 19.29 0.00 42.51 5.68
278 279 2.506438 GACGCAGGTGTACTCGGC 60.506 66.667 0.00 0.00 0.00 5.54
279 280 2.181021 GGACGCAGGTGTACTCGG 59.819 66.667 0.00 0.00 0.00 4.63
280 281 1.443872 GTGGACGCAGGTGTACTCG 60.444 63.158 0.00 0.00 0.00 4.18
281 282 1.443872 CGTGGACGCAGGTGTACTC 60.444 63.158 0.00 0.00 0.00 2.59
282 283 2.649034 CGTGGACGCAGGTGTACT 59.351 61.111 0.00 0.00 0.00 2.73
307 308 2.593468 CTATGGTGTGGGACTGGCCG 62.593 65.000 0.00 0.00 37.63 6.13
308 309 1.224592 CTATGGTGTGGGACTGGCC 59.775 63.158 0.00 0.00 0.00 5.36
309 310 1.224592 CCTATGGTGTGGGACTGGC 59.775 63.158 0.00 0.00 0.00 4.85
310 311 0.833287 CTCCTATGGTGTGGGACTGG 59.167 60.000 0.00 0.00 33.34 4.00
311 312 0.179000 GCTCCTATGGTGTGGGACTG 59.821 60.000 0.00 0.00 33.34 3.51
312 313 0.983378 GGCTCCTATGGTGTGGGACT 60.983 60.000 0.00 0.00 33.34 3.85
313 314 1.527370 GGCTCCTATGGTGTGGGAC 59.473 63.158 0.00 0.00 33.34 4.46
314 315 1.692749 GGGCTCCTATGGTGTGGGA 60.693 63.158 0.00 0.00 35.92 4.37
315 316 2.919043 GGGCTCCTATGGTGTGGG 59.081 66.667 0.00 0.00 0.00 4.61
316 317 2.505982 CGGGCTCCTATGGTGTGG 59.494 66.667 0.00 0.00 0.00 4.17
317 318 2.203070 GCGGGCTCCTATGGTGTG 60.203 66.667 0.00 0.00 0.00 3.82
318 319 3.849951 CGCGGGCTCCTATGGTGT 61.850 66.667 0.00 0.00 0.00 4.16
319 320 2.869503 AAACGCGGGCTCCTATGGTG 62.870 60.000 12.47 0.00 0.00 4.17
320 321 2.193087 AAAACGCGGGCTCCTATGGT 62.193 55.000 12.47 0.00 0.00 3.55
321 322 1.436983 GAAAACGCGGGCTCCTATGG 61.437 60.000 12.47 0.00 0.00 2.74
322 323 0.742990 TGAAAACGCGGGCTCCTATG 60.743 55.000 12.47 0.00 0.00 2.23
323 324 0.180406 ATGAAAACGCGGGCTCCTAT 59.820 50.000 12.47 0.00 0.00 2.57
324 325 0.742990 CATGAAAACGCGGGCTCCTA 60.743 55.000 12.47 0.00 0.00 2.94
325 326 2.040544 CATGAAAACGCGGGCTCCT 61.041 57.895 12.47 0.00 0.00 3.69
326 327 2.485122 CATGAAAACGCGGGCTCC 59.515 61.111 12.47 0.00 0.00 4.70
327 328 2.202479 GCATGAAAACGCGGGCTC 60.202 61.111 12.47 3.62 0.00 4.70
328 329 1.876497 AATGCATGAAAACGCGGGCT 61.876 50.000 12.47 0.00 0.00 5.19
329 330 1.013524 AAATGCATGAAAACGCGGGC 61.014 50.000 12.47 2.67 0.00 6.13
330 331 0.991344 GAAATGCATGAAAACGCGGG 59.009 50.000 12.47 0.00 0.00 6.13
331 332 0.634731 CGAAATGCATGAAAACGCGG 59.365 50.000 12.47 0.00 0.00 6.46
332 333 1.056169 CACGAAATGCATGAAAACGCG 59.944 47.619 3.53 3.53 0.00 6.01
333 334 2.050691 ACACGAAATGCATGAAAACGC 58.949 42.857 0.00 0.00 0.00 4.84
334 335 3.554524 AGACACGAAATGCATGAAAACG 58.445 40.909 0.00 4.91 0.00 3.60
335 336 6.086222 ACATAGACACGAAATGCATGAAAAC 58.914 36.000 0.00 0.00 0.00 2.43
336 337 6.252967 ACATAGACACGAAATGCATGAAAA 57.747 33.333 0.00 0.00 0.00 2.29
337 338 5.878332 ACATAGACACGAAATGCATGAAA 57.122 34.783 0.00 0.00 0.00 2.69
338 339 5.878332 AACATAGACACGAAATGCATGAA 57.122 34.783 0.00 0.00 0.00 2.57
339 340 5.163764 GGAAACATAGACACGAAATGCATGA 60.164 40.000 0.00 0.00 0.00 3.07
340 341 5.030295 GGAAACATAGACACGAAATGCATG 58.970 41.667 0.00 0.00 0.00 4.06
341 342 4.943705 AGGAAACATAGACACGAAATGCAT 59.056 37.500 0.00 0.00 0.00 3.96
342 343 4.323417 AGGAAACATAGACACGAAATGCA 58.677 39.130 0.00 0.00 0.00 3.96
343 344 4.946784 AGGAAACATAGACACGAAATGC 57.053 40.909 0.00 0.00 0.00 3.56
344 345 6.086222 CCAAAGGAAACATAGACACGAAATG 58.914 40.000 0.00 0.00 0.00 2.32
345 346 5.768164 ACCAAAGGAAACATAGACACGAAAT 59.232 36.000 0.00 0.00 0.00 2.17
346 347 5.008217 CACCAAAGGAAACATAGACACGAAA 59.992 40.000 0.00 0.00 0.00 3.46
347 348 4.513692 CACCAAAGGAAACATAGACACGAA 59.486 41.667 0.00 0.00 0.00 3.85
348 349 4.062293 CACCAAAGGAAACATAGACACGA 58.938 43.478 0.00 0.00 0.00 4.35
349 350 4.062293 TCACCAAAGGAAACATAGACACG 58.938 43.478 0.00 0.00 0.00 4.49
350 351 5.531287 AGTTCACCAAAGGAAACATAGACAC 59.469 40.000 0.00 0.00 0.00 3.67
351 352 5.530915 CAGTTCACCAAAGGAAACATAGACA 59.469 40.000 0.00 0.00 0.00 3.41
352 353 5.531287 ACAGTTCACCAAAGGAAACATAGAC 59.469 40.000 0.00 0.00 0.00 2.59
353 354 5.530915 CACAGTTCACCAAAGGAAACATAGA 59.469 40.000 0.00 0.00 0.00 1.98
354 355 5.299279 ACACAGTTCACCAAAGGAAACATAG 59.701 40.000 0.00 0.00 0.00 2.23
355 356 5.197451 ACACAGTTCACCAAAGGAAACATA 58.803 37.500 0.00 0.00 0.00 2.29
356 357 4.023291 ACACAGTTCACCAAAGGAAACAT 58.977 39.130 0.00 0.00 0.00 2.71
357 358 3.426615 ACACAGTTCACCAAAGGAAACA 58.573 40.909 0.00 0.00 0.00 2.83
358 359 5.298276 TCATACACAGTTCACCAAAGGAAAC 59.702 40.000 0.00 0.00 0.00 2.78
359 360 5.441500 TCATACACAGTTCACCAAAGGAAA 58.558 37.500 0.00 0.00 0.00 3.13
360 361 5.042463 TCATACACAGTTCACCAAAGGAA 57.958 39.130 0.00 0.00 0.00 3.36
361 362 4.698201 TCATACACAGTTCACCAAAGGA 57.302 40.909 0.00 0.00 0.00 3.36
362 363 5.003160 TCATCATACACAGTTCACCAAAGG 58.997 41.667 0.00 0.00 0.00 3.11
363 364 6.456047 CGATCATCATACACAGTTCACCAAAG 60.456 42.308 0.00 0.00 0.00 2.77
364 365 5.351189 CGATCATCATACACAGTTCACCAAA 59.649 40.000 0.00 0.00 0.00 3.28
365 366 4.869861 CGATCATCATACACAGTTCACCAA 59.130 41.667 0.00 0.00 0.00 3.67
366 367 4.432712 CGATCATCATACACAGTTCACCA 58.567 43.478 0.00 0.00 0.00 4.17
367 368 3.246226 GCGATCATCATACACAGTTCACC 59.754 47.826 0.00 0.00 0.00 4.02
368 369 4.026228 CAGCGATCATCATACACAGTTCAC 60.026 45.833 0.00 0.00 0.00 3.18
369 370 4.114794 CAGCGATCATCATACACAGTTCA 58.885 43.478 0.00 0.00 0.00 3.18
370 371 4.363138 TCAGCGATCATCATACACAGTTC 58.637 43.478 0.00 0.00 0.00 3.01
371 372 4.391405 TCAGCGATCATCATACACAGTT 57.609 40.909 0.00 0.00 0.00 3.16
372 373 4.115516 GTTCAGCGATCATCATACACAGT 58.884 43.478 0.00 0.00 0.00 3.55
373 374 4.366586 AGTTCAGCGATCATCATACACAG 58.633 43.478 0.00 0.00 0.00 3.66
374 375 4.391405 AGTTCAGCGATCATCATACACA 57.609 40.909 0.00 0.00 0.00 3.72
375 376 4.568359 ACAAGTTCAGCGATCATCATACAC 59.432 41.667 0.00 0.00 0.00 2.90
376 377 4.567959 CACAAGTTCAGCGATCATCATACA 59.432 41.667 0.00 0.00 0.00 2.29
377 378 4.025396 CCACAAGTTCAGCGATCATCATAC 60.025 45.833 0.00 0.00 0.00 2.39
378 379 4.122046 CCACAAGTTCAGCGATCATCATA 58.878 43.478 0.00 0.00 0.00 2.15
379 380 2.941064 CCACAAGTTCAGCGATCATCAT 59.059 45.455 0.00 0.00 0.00 2.45
380 381 2.349590 CCACAAGTTCAGCGATCATCA 58.650 47.619 0.00 0.00 0.00 3.07
381 382 1.063174 GCCACAAGTTCAGCGATCATC 59.937 52.381 0.00 0.00 0.00 2.92
382 383 1.089920 GCCACAAGTTCAGCGATCAT 58.910 50.000 0.00 0.00 0.00 2.45
383 384 2.543578 GCCACAAGTTCAGCGATCA 58.456 52.632 0.00 0.00 0.00 2.92
388 389 1.921243 AAAAACGCCACAAGTTCAGC 58.079 45.000 0.00 0.00 0.00 4.26
404 405 0.757188 TCTTTCCCGCTGCCCAAAAA 60.757 50.000 0.00 0.00 0.00 1.94
405 406 1.152652 TCTTTCCCGCTGCCCAAAA 60.153 52.632 0.00 0.00 0.00 2.44
406 407 1.901464 GTCTTTCCCGCTGCCCAAA 60.901 57.895 0.00 0.00 0.00 3.28
407 408 2.282180 GTCTTTCCCGCTGCCCAA 60.282 61.111 0.00 0.00 0.00 4.12
408 409 3.126703 TTGTCTTTCCCGCTGCCCA 62.127 57.895 0.00 0.00 0.00 5.36
409 410 2.282180 TTGTCTTTCCCGCTGCCC 60.282 61.111 0.00 0.00 0.00 5.36
410 411 0.678048 ATCTTGTCTTTCCCGCTGCC 60.678 55.000 0.00 0.00 0.00 4.85
411 412 1.135575 CAATCTTGTCTTTCCCGCTGC 60.136 52.381 0.00 0.00 0.00 5.25
412 413 2.426522 TCAATCTTGTCTTTCCCGCTG 58.573 47.619 0.00 0.00 0.00 5.18
413 414 2.859165 TCAATCTTGTCTTTCCCGCT 57.141 45.000 0.00 0.00 0.00 5.52
414 415 4.440839 AAATCAATCTTGTCTTTCCCGC 57.559 40.909 0.00 0.00 0.00 6.13
434 435 1.458588 GCCCCCAGACACCCAAAAA 60.459 57.895 0.00 0.00 0.00 1.94
435 436 2.200092 GCCCCCAGACACCCAAAA 59.800 61.111 0.00 0.00 0.00 2.44
436 437 3.909651 GGCCCCCAGACACCCAAA 61.910 66.667 0.00 0.00 0.00 3.28
440 441 3.961414 TTTCGGCCCCCAGACACC 61.961 66.667 0.00 0.00 0.00 4.16
441 442 2.671963 GTTTCGGCCCCCAGACAC 60.672 66.667 0.00 0.00 0.00 3.67
442 443 3.961414 GGTTTCGGCCCCCAGACA 61.961 66.667 0.00 0.00 0.00 3.41
443 444 3.647771 AGGTTTCGGCCCCCAGAC 61.648 66.667 0.00 0.00 0.00 3.51
444 445 3.646715 CAGGTTTCGGCCCCCAGA 61.647 66.667 0.00 0.00 0.00 3.86
445 446 3.628646 CTCAGGTTTCGGCCCCCAG 62.629 68.421 0.00 0.00 0.00 4.45
446 447 3.646715 CTCAGGTTTCGGCCCCCA 61.647 66.667 0.00 0.00 0.00 4.96
447 448 4.426313 CCTCAGGTTTCGGCCCCC 62.426 72.222 0.00 0.00 0.00 5.40
448 449 4.426313 CCCTCAGGTTTCGGCCCC 62.426 72.222 0.00 0.00 0.00 5.80
466 467 4.514577 ATCGAGTTCCCAGCCGCG 62.515 66.667 0.00 0.00 0.00 6.46
467 468 2.586357 GATCGAGTTCCCAGCCGC 60.586 66.667 0.00 0.00 0.00 6.53
468 469 2.278857 CGATCGAGTTCCCAGCCG 60.279 66.667 10.26 0.00 0.00 5.52
469 470 2.586357 GCGATCGAGTTCCCAGCC 60.586 66.667 21.57 0.00 0.00 4.85
470 471 2.586357 GGCGATCGAGTTCCCAGC 60.586 66.667 21.57 0.00 0.00 4.85
471 472 2.107141 GGGCGATCGAGTTCCCAG 59.893 66.667 21.57 0.00 38.62 4.45
472 473 2.682136 TGGGCGATCGAGTTCCCA 60.682 61.111 22.67 22.67 45.87 4.37
473 474 2.107141 CTGGGCGATCGAGTTCCC 59.893 66.667 21.57 19.76 39.22 3.97
474 475 2.107141 CCTGGGCGATCGAGTTCC 59.893 66.667 21.57 14.03 0.00 3.62
475 476 2.107141 CCCTGGGCGATCGAGTTC 59.893 66.667 21.57 0.00 0.00 3.01
476 477 4.162690 GCCCTGGGCGATCGAGTT 62.163 66.667 24.16 0.00 39.62 3.01
485 486 1.153842 CGAATTTTTCGCCCTGGGC 60.154 57.895 28.17 28.17 46.97 5.36
509 510 3.394787 GCGAATATGTTTTTGCGTTTGC 58.605 40.909 0.00 0.00 43.20 3.68
510 511 3.479548 CGGCGAATATGTTTTTGCGTTTG 60.480 43.478 0.00 0.00 36.95 2.93
511 512 2.659279 CGGCGAATATGTTTTTGCGTTT 59.341 40.909 0.00 0.00 36.95 3.60
512 513 2.246789 CGGCGAATATGTTTTTGCGTT 58.753 42.857 0.00 0.00 36.95 4.84
513 514 1.466697 CCGGCGAATATGTTTTTGCGT 60.467 47.619 9.30 0.00 36.95 5.24
514 515 1.187715 CCGGCGAATATGTTTTTGCG 58.812 50.000 9.30 0.00 36.95 4.85
515 516 1.135228 ACCCGGCGAATATGTTTTTGC 60.135 47.619 9.30 0.00 35.60 3.68
516 517 2.094957 ACACCCGGCGAATATGTTTTTG 60.095 45.455 9.30 0.00 0.00 2.44
517 518 2.094957 CACACCCGGCGAATATGTTTTT 60.095 45.455 9.30 0.00 0.00 1.94
518 519 1.470890 CACACCCGGCGAATATGTTTT 59.529 47.619 9.30 0.00 0.00 2.43
519 520 1.091537 CACACCCGGCGAATATGTTT 58.908 50.000 9.30 0.00 0.00 2.83
520 521 1.373590 GCACACCCGGCGAATATGTT 61.374 55.000 9.30 0.00 0.00 2.71
521 522 1.817941 GCACACCCGGCGAATATGT 60.818 57.895 9.30 3.78 0.00 2.29
522 523 1.523711 AGCACACCCGGCGAATATG 60.524 57.895 9.30 3.06 36.08 1.78
523 524 1.523711 CAGCACACCCGGCGAATAT 60.524 57.895 9.30 0.00 36.08 1.28
524 525 2.125310 CAGCACACCCGGCGAATA 60.125 61.111 9.30 0.00 36.08 1.75
535 536 4.992740 ATTTGGCCCCGCAGCACA 62.993 61.111 0.00 0.00 0.00 4.57
536 537 4.133796 GATTTGGCCCCGCAGCAC 62.134 66.667 0.00 0.00 0.00 4.40
537 538 4.675161 TGATTTGGCCCCGCAGCA 62.675 61.111 0.00 0.00 0.00 4.41
538 539 3.360956 CTTGATTTGGCCCCGCAGC 62.361 63.158 0.00 0.00 0.00 5.25
539 540 1.978617 ACTTGATTTGGCCCCGCAG 60.979 57.895 0.00 0.00 0.00 5.18
540 541 2.117206 ACTTGATTTGGCCCCGCA 59.883 55.556 0.00 0.00 0.00 5.69
541 542 2.573340 CACTTGATTTGGCCCCGC 59.427 61.111 0.00 0.00 0.00 6.13
542 543 1.304052 TCCACTTGATTTGGCCCCG 60.304 57.895 0.00 0.00 33.71 5.73
543 544 0.039618 TCTCCACTTGATTTGGCCCC 59.960 55.000 0.00 0.00 33.71 5.80
544 545 1.753073 CATCTCCACTTGATTTGGCCC 59.247 52.381 0.00 0.00 33.71 5.80
545 546 1.135721 GCATCTCCACTTGATTTGGCC 59.864 52.381 0.00 0.00 33.71 5.36
546 547 2.097825 AGCATCTCCACTTGATTTGGC 58.902 47.619 0.00 0.00 33.71 4.52
561 562 4.672587 TGGTGGTGATACTTAGAGCATC 57.327 45.455 0.00 0.00 0.00 3.91
562 563 5.130975 TCATTGGTGGTGATACTTAGAGCAT 59.869 40.000 0.00 0.00 0.00 3.79
563 564 4.469586 TCATTGGTGGTGATACTTAGAGCA 59.530 41.667 0.00 0.00 0.00 4.26
564 565 5.023533 TCATTGGTGGTGATACTTAGAGC 57.976 43.478 0.00 0.00 0.00 4.09
615 647 5.818136 TGCGGGAAAATCTCTTCTTATTG 57.182 39.130 0.00 0.00 0.00 1.90
643 675 8.859090 TGTGATTTTGGATCTTAAATGTCTTGT 58.141 29.630 9.35 0.00 0.00 3.16
644 676 9.865321 ATGTGATTTTGGATCTTAAATGTCTTG 57.135 29.630 9.35 0.00 0.00 3.02
646 678 8.472413 CCATGTGATTTTGGATCTTAAATGTCT 58.528 33.333 9.35 0.00 34.81 3.41
647 679 8.253113 ACCATGTGATTTTGGATCTTAAATGTC 58.747 33.333 9.35 6.30 36.79 3.06
649 681 8.875803 CAACCATGTGATTTTGGATCTTAAATG 58.124 33.333 9.35 0.30 36.79 2.32
650 682 8.814931 TCAACCATGTGATTTTGGATCTTAAAT 58.185 29.630 5.61 5.61 36.79 1.40
717 751 6.365970 AAATCTCTTCTCAACCTCTGCTAA 57.634 37.500 0.00 0.00 0.00 3.09
744 778 0.667993 CAACCTCAGGCGCTCAAAAA 59.332 50.000 7.64 0.00 0.00 1.94
745 779 0.179032 TCAACCTCAGGCGCTCAAAA 60.179 50.000 7.64 0.00 0.00 2.44
746 780 0.603707 CTCAACCTCAGGCGCTCAAA 60.604 55.000 7.64 0.00 0.00 2.69
755 789 7.041107 CCTTCTTTATCTCTTCTCAACCTCAG 58.959 42.308 0.00 0.00 0.00 3.35
786 820 7.178451 ACTTCTTTCTTTCCTGTTCCTCAAAAA 59.822 33.333 0.00 0.00 0.00 1.94
787 821 6.663523 ACTTCTTTCTTTCCTGTTCCTCAAAA 59.336 34.615 0.00 0.00 0.00 2.44
788 822 6.187682 ACTTCTTTCTTTCCTGTTCCTCAAA 58.812 36.000 0.00 0.00 0.00 2.69
789 823 5.755849 ACTTCTTTCTTTCCTGTTCCTCAA 58.244 37.500 0.00 0.00 0.00 3.02
790 824 5.373812 ACTTCTTTCTTTCCTGTTCCTCA 57.626 39.130 0.00 0.00 0.00 3.86
791 825 6.937465 ACATACTTCTTTCTTTCCTGTTCCTC 59.063 38.462 0.00 0.00 0.00 3.71
792 826 6.842676 ACATACTTCTTTCTTTCCTGTTCCT 58.157 36.000 0.00 0.00 0.00 3.36
793 827 6.710744 TGACATACTTCTTTCTTTCCTGTTCC 59.289 38.462 0.00 0.00 0.00 3.62
794 828 7.730364 TGACATACTTCTTTCTTTCCTGTTC 57.270 36.000 0.00 0.00 0.00 3.18
795 829 8.406297 GTTTGACATACTTCTTTCTTTCCTGTT 58.594 33.333 0.00 0.00 0.00 3.16
796 830 7.775561 AGTTTGACATACTTCTTTCTTTCCTGT 59.224 33.333 0.00 0.00 0.00 4.00
797 831 8.072567 CAGTTTGACATACTTCTTTCTTTCCTG 58.927 37.037 0.00 0.00 0.00 3.86
798 832 7.229506 CCAGTTTGACATACTTCTTTCTTTCCT 59.770 37.037 0.00 0.00 0.00 3.36
799 833 7.363431 CCAGTTTGACATACTTCTTTCTTTCC 58.637 38.462 0.00 0.00 0.00 3.13
800 834 7.363431 CCCAGTTTGACATACTTCTTTCTTTC 58.637 38.462 0.00 0.00 0.00 2.62
801 835 6.239036 GCCCAGTTTGACATACTTCTTTCTTT 60.239 38.462 0.00 0.00 0.00 2.52
802 836 5.241728 GCCCAGTTTGACATACTTCTTTCTT 59.758 40.000 0.00 0.00 0.00 2.52
803 837 4.762251 GCCCAGTTTGACATACTTCTTTCT 59.238 41.667 0.00 0.00 0.00 2.52
811 845 3.610911 AGCTAAGCCCAGTTTGACATAC 58.389 45.455 0.00 0.00 0.00 2.39
820 854 2.028020 GTGTGTCTAAGCTAAGCCCAGT 60.028 50.000 0.00 0.00 0.00 4.00
821 855 2.234908 AGTGTGTCTAAGCTAAGCCCAG 59.765 50.000 0.00 0.00 0.00 4.45
823 857 2.418884 GGAGTGTGTCTAAGCTAAGCCC 60.419 54.545 0.00 0.00 0.00 5.19
824 858 2.735762 CGGAGTGTGTCTAAGCTAAGCC 60.736 54.545 0.00 0.00 0.00 4.35
825 859 2.531206 CGGAGTGTGTCTAAGCTAAGC 58.469 52.381 0.00 0.00 0.00 3.09
826 860 2.094700 TGCGGAGTGTGTCTAAGCTAAG 60.095 50.000 0.00 0.00 32.47 2.18
828 862 1.472878 CTGCGGAGTGTGTCTAAGCTA 59.527 52.381 0.00 0.00 32.47 3.32
829 863 0.244994 CTGCGGAGTGTGTCTAAGCT 59.755 55.000 0.00 0.00 32.47 3.74
830 864 1.355066 GCTGCGGAGTGTGTCTAAGC 61.355 60.000 5.62 0.00 0.00 3.09
832 866 1.292223 GGCTGCGGAGTGTGTCTAA 59.708 57.895 5.62 0.00 0.00 2.10
833 867 2.646175 GGGCTGCGGAGTGTGTCTA 61.646 63.158 5.62 0.00 0.00 2.59
834 868 4.008933 GGGCTGCGGAGTGTGTCT 62.009 66.667 5.62 0.00 0.00 3.41
930 964 3.145551 TTAGTCCTCGGCGCTCCC 61.146 66.667 7.64 0.00 0.00 4.30
936 970 2.104530 GCTCGGTTAGTCCTCGGC 59.895 66.667 0.00 0.00 0.00 5.54
1100 1134 1.844497 GGGAGCACCATAGTTTAGGGT 59.156 52.381 1.58 0.00 44.96 4.34
1114 1148 1.480954 GAGACGGAATGTAAGGGAGCA 59.519 52.381 0.00 0.00 0.00 4.26
1166 1200 0.745486 CAGCGGCAACCATCAGATCA 60.745 55.000 1.45 0.00 0.00 2.92
1186 1220 1.635663 CCACGAAGTAAAGGCCTGCG 61.636 60.000 5.69 6.43 41.61 5.18
1195 1229 1.180456 TCTCCACCGCCACGAAGTAA 61.180 55.000 0.00 0.00 41.61 2.24
1556 1592 5.747197 CGATAAACTTACGAGCCACAGTTAT 59.253 40.000 0.00 0.00 0.00 1.89
1762 1799 2.551287 CCCAACCGAGGAATACACACAA 60.551 50.000 0.00 0.00 0.00 3.33
2016 2053 1.636003 AGGGTAAAAGAGAAGCAGGGG 59.364 52.381 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.