>input_sequence_84291
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-------------------------------------------------------------------------ATGGGGA
TGGGCGGTCGAGGTGTGGTTGGCGACAGGTGGTCGCAGCGCGTCCTCTGGATGTGCGCCATCGGCAGCGCCGTGAGTAAG
CACCTGAACCAAAACCCTAAACTATGGTGCTCCCTTACATTCCGTCTCCGCGTCCTCGTGGTTGCTCCGTGCCGCGATCT
GATCTGATGGTTGCCGCTGCGCAGGCCTTTACTTCGTGGCGGTGGAGAGGCAGGCGCAGAACCGCGCGCGGGCGGTGTCC
GAGGGCTTCAAGGGCCTGGACGGCGGAGGCGGAGGCGGCAGCCGTGGCGGGGAGGACGTGTGA-----------------
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>chr6B_1_TraesCS6B01G191700
AGGAGAAATCCGAAGAGCGGTGGTCAGCGTTGATGATGAAGTAGGGCGCAAAGCTCGACCTTCTCAGGACCAACGTCGCC
GCGGTAGACATGTCGACGATGGACGAGCAGGTCAAGGCTTGGTACTTGACGGAGCACGGCCTCATCTTGAACCAGATGCC
CGGGCCGGCGTCGACCACCGCATCTACGCCCACGCCGACAGCAACGCCGATGCCCAGGCCCGAGAGATGAAGCAGTGCCG
ATGCCGACCACCAGCCCGAGCACAGAAGCCACGCGGACGCCGAGTACACCTGCGTCCACGCCTGCCCCGGCCAGTCCCAC
ACCATAGGAGCCCGCGTTTTCATGCATTTCGTGTCTATGTTTCCTTTGGTGAACTGTGTATGATGATCGCTGAACTTGTG
GCGTTTTTTGGGCAGCGGGAAAGACAAGATTGATTTTTTGGGTGTCTGGGGGCCGAAACCTGAGGGCGCGGCTGGGAACT
CGATCGCCCAGGGCGAAAAATTCGCTGGCGCAAACGCAAAAACATATTCGCCGGGTGTGCTGCGGGGCCAAATCAAGTGG
AGATGCTCTAAGTATCACCACCAATGATACAATACTTATCTCCTTTTC-------------------------------A
TTTTTACAATAAGAAGAGATTTTCCCGCAAAAAAACAAGACA--TTTAAGATCCAAAATCACATGGTTGAAAACTGAAGT
AAAACAAAGGTTGAAAAGAGATTATTCTTTTTAGCAGAGGTTGAGAAGAGATTTTTTTTTTTGAGCGCCTGAGGTTGAGA
AGAGATAAAGAAGGATTTTTTTTTGAGGAACAGGAAAGAAAGAAGTATGTCAAACTGGGCTTAGCTTAGACACACTCCGC
AGCCCGGCCCAACCCAGCTAAAGAACCAGTCACTACTTTGGTTCTCACCAGGTGGGACCCGCTTGTCGGTCAGTACACAC
GAGGGGAGCGCCGAGGACTAACCGAGCAGGCGCGCAGCACAGCATCTGCCTCACCGGCGGCGGCGGCGGCGGCATGGGGA
TGGGCGGTCGAGGTGTGGTTGGCGACAGGTGGTCGCAGCGCGTCCTCTGGATGTGCGCCATCGGCAGCGCCGTGAGTAAG
CACCTGAACCAAAACCCTAAACTATGGTGCTCCCTTACATTCCGTCTCCGCGTCCTCGTGGTTGCTCCGTGCCGCGATCT
GATCTGATGGTTGCCGCTGCGCAGGCCTTTACTTCGTGGCGGTGGAGAGGCAGGCGCAGAACCGCGCGCGGGCGGTGTCC
GAGGGCTTCAAGGGCCTGGACGGCGGAGGCGGAGGCGGCAGCCGTGGCGGGGAGGACGTGTGACTTTCGCGGCGCCGAGG
TGAAAGGGCGTGTAGAGATGTGCCTTTCTGCTCGAAGCCTGAGACAAGTTAGAGTTTGCTTATCTGCTGCTTGTTCACAA
GATTCACAGAATCGTTGCAATAAGAATGTACTGCTAATTGCTCCCTGTGTTGCTGTATGTCAATGTTT-GGGGGCAAGAA
TTGTTATCTGACGACAT-GATGCTTTTTTGTGTAAAATGTGAGTTGGAAAATTCAGATTATGCTTCGTTTCATAACTGTG
GCTCGTAAGTTTATCGAGCTTGTTGGGTTGCAACTTAAGAATTAGAACTTAGTCTAA-AAAAACAATGGAGTATATAAGC
AAATGCGAAATTTTCGTTTAGGTAATTCATAGATATAGGCTTGAGTTCCTGTATTTTCCATACTGTGATACTCTGTTTTA
CATTTCTCTAAAATGAGCCACTGTCTTTTAGGATTTTTTTGTGTGTATTCCTCGGTTGGGAAACCGAAAGGTAAACTAGG
AGATGATCAACTTAAAATGAACATAATGGCCGCTCAGTGAGCACTACATTCTTTTCCTGCCTCAGTACCAATACTTGCTG
CACCTCACTAATTGACTACTTTTGATCCTGATGGGCACTGGGTGACAGACTCTAGTAATACTGATGAGGTCTATCAAATA
TGGAATAGTCCACCAACCCATCATACGCTGATTTCCGGCAGTTTTTTCTTCTCCCCTGCTTCTCTTTTACCCTTACTGAA
TGATAAGCTACTGCAAGTAGGGTTTGCATGCTTGAATCCTTTTCTGTCTGCATTGTAGAGTTCTAGCAGGGAGTAAAATG
GAATAATCCAGTGCCAGTGTATTAGATTGT----------CTTTTATTTATCTGTAGTTGGTAATCAACTTAGTGCTGA-
-------TTAGATTCATGATTTTTAAGTTTGGTAACTTTTTTGCCCCGTAGAAGATAAGCAGAAAACAGCAATAAATGTT
TGCTTAAGTG--AAAATTGATCCCAATTCCTGTCCATTGTAGTCAA
>chr6D_569
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--------TAAGTATCACCACCAATGATACAATACTTATCTCCTTTTCAATCCCTCAAAAAAAAGCTTATCTCCTTTTCA
TTTTTATAATAAGAAGAGATTTTCCCGCAAAAAATAATAAGGCGTTTAAGATCCAAAATCACATGGTTGAAAACTGAAGT
AAAACAAAGGTTGAAAAGAGATTATTCTTTCTAGCAGAGGTTGAGAAGAGATTTTTG---TTGAGCGCTTGAGGTTGAGA
AGAAATAAAAAAGGAAA--------------------GAAAGAA-TATGTCAACTTAACTTAGAC----ACACACTCCGC
AGCCCGGCCCAACCCAGCTAAAGAACCAGTCACTACTTTGGTTCTCACCAGGTGGGACCCGCTTGTCGGTCAGTAGACAC
GAGCGGAGCACCGAGGACTAACCGAGCGGGCGCGCAGCACATCATCTTCCTCACCGGCGGCGGCGGCGGCGGCATGGGGA
TGGGCGGTCGAGGTGTGGTTGGCGACAGGTGGTCGCAGCGCGTCCTCTGGATGTGCGCCATCGGCAGCGCCGTGAGTAAG
CGCCTGAACCAAA-CCCTAAACTATGGCGCTCCCTTACATTCCGTCTCCGCGTCCTCCTGGTTGTTCCGTGCCGCGATTC
GATCTGATGGTTTCCGCTGTGCAGGCCTGTACTTTGTGGCGGTGGAGAGGCAGGCGCAGAACCGCGCGCGGGCGGTGTCC
GAGGGCTTCAAGGGCCTGGACGGCGCAGGCGGAGGCGGCAGCCGTGGCGGGGAGGACGTGTAACTTTGGCGGCGCCGAGG
TGAAAGGGCGTGTAGAGATGTGCCTTTCTGCTCGAAGCCTGAGACAAGTTAGAGTTTTCTTATCTGCTGCTTGTTCACAA
GATTCACAGAATCGTTGCAATAATAATGTACTGCTAATTGCCCCCTGTGTTGCGGTATGTCAATGCTTGGGGGGCAAGAA
TTGTTATCTGACGACCTGGATGGTTTTATGTGTGAAATATGAGTTGGAAAATTCAGATTATGCTTCGTTTCGTGACTGTT
GCTCGTAAGTTTATCGAGCTTGTTGGGTTGCAACTTAAGAATTAGAACTTAGTCTAAGAAAAACAATGGAGTATATAAGC
AAATGAGAAATTTTCGTTTAGGTAATTCATAGATATAGGCTTGAGTTCCTGTATTTTCCATACTGTGATACTCTGTTCTA
CATTTATCTAAAATGAGCCACTGTCTTTTAGGATTTGTGTGTGTGTATTCCTAGGTTGGGAAACCGAAAGGTAAACTAGG
AGATGATCAACTTAAAATGAACATAATGGCTGCTCAGTGAGCACTAAATTCTTTTCCTGCCTCAGTACCAATACTTGCTG
CACCTCGCTACTTGACTACTTTTGATCCTAATGGGCACTGGGTCACAGACTCTAGTAATACTGATGAGGTCTATCAAATA
TGGAATAGTCCACCAACCCATCATACGTTGATTTCCGGCAGTTTTTTCTTCTTCCCTGCTTCTCTTTTACCCTTACTGAA
TGATAAACTACTGCAAGTAGGGTTTGCATGCTTGAATCCTTTTCTGTCTGCATTGTAGAGTTTTAGCAGGG-GTAAAATG
GAATAATCCAGTGCCAGTGTATTAGATTGTATTAGATTGTCTCTTATTTATCTATAGTTGGTAATCAACATAGTGCTGA-
-------TTGGATTCTTGATTTTTAAGTTTGGTAACTTTTTTGCCCAGTAGAAGATAAGCAGAAAGCAGCCATAAATGTT
TGTTTAAGTGAAAAAATTGACCCCAATTCCTGTCCATTGTAGTCAA
>chr6A_799
AGG-----------------------------------------------------------------------------
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---------------AA--------------------GAAAGAAATATGTCAACTTAACTTAGAC----ACACACTCCGC
AGCCCGGCCCAACCCAGCTAAAGAACCAGTCACTACTTTGGTTCTCACCAGGTGGGACCCGCTTGTCGGTCAGTAGACAC
GAGCGGAGC-----------ACCGAGCAGGCGCGCAGCACATCATCTGTCACAC---CGGCGGCGGCGGCGGCATGGGGA
TGGGCGGTCGAGGTGTGGTTGGCGACAGGTGGTCGCAGCGCGTCCTCTGGATGTGCGCCATCGGCAGCGCCGTGAGTAAG
CACCTGAACCAAA-CCCTAAACTATGGCGCTCCCTTACATTCCGTCTCCGCGTCCTCATGGTTGTTCCGTGCCGCGATCC
GATCTGATGGTTGCCGCTCTGCAGGCCTGTACTTCGTGGCGGTGGAGAGGCAGGCGCAGAACCGCGCGCGGGCGGTGTCC
GAGGGCTTTAAGGGCCTGGACGGCGCAGACGGAGGTGGCAGCCGTGGCGGGGAGGACGTGTGACTTTGGCGGCGCCGAGG
TGAAAGGGCGTGTAGGCATGTGCCTTTCTGCTCGAAGCCTGAGACAAGTTAGAGTTTGCTTATCTGCTGCTTGTTCACAA
GATTCACAGAATCGTTGCAATAAGAATGTACTGCTAATTGCTCCCTGTGTTGCTGTATGTCAATGTTT-GGGGGCAAGAA
TTGTTATCTGACGACAT-GATGCTTTTTTGTGTGAAATGTGAGTTGGAAAATTCAGATTATGCTTCATTTCGTAACTGTG
GCTCATAAGTTTATCGAGCTTGTTGGGTTGCAACTTAAGAATTAGAACTTAGTCTAAGAAAAACAATGGAGTATATAAGC
AAATGAGAAATTTTCGTTTAGGTAATTCATAGATATAGGCTCGAGTTCCTGTATTTTCCATACTGTTATACTCTGTTTTA
CATTTCTCTAAAATGAGCCACTGTCTTTTAGGATTTTTGTGTGTGTATTCCTCGGTTGGGAAACCAAAAGGTAAACCAGG
AGATGATCAACTTAAAATGAACATAATGGCCGCTCAGTGAGCACTACATTCTTTTCGTGCCTTAGTACCAATACTTGCTG
CACCTCACTAATTGACTACTTTTGATCCTGATGGGCACTGGGTGACAGACTCTAGTAATACTGATGAGGTCTATCAAATA
TGGAATAGTCCACCAACCCATCATATGCTGATTTCTGGCAGTTTTTTCTTCTTCCCTGCTTCTCTTTTACCCTTACTGAA
TGATAAGCTACTGCAAGTAGGGTTTGCATGCTTGAATCCTTTTCTGTCTACATTGTAGAGTTCTAGCAGGGAGTAAAATG
GAATAATCCAGTGCCAGTGTATTAGATTGT----------CTCTTATTTATCTATAGTTGGTAATCAACTTAGTGCTGAA
CTGCTGATTAGATTCATGATTTTTAAGTTTGGTAACTTTTTTGCCCCGTAGAAGATAAGCAGAAAACAGCAATAAATGTT
TGCTTAAGTG--AAAATTGATCCCAATTCCTGTCCATTGTAGTCAA
>SNPs
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS------------------------------------------------------------------------
------S---------------------------SS-SS-SS--------------------------------------
------------------------------S-------------------------SSSS--------S-----------
---S-----S-----SSSSSSSSSSSSSSSSSSSSSS-------S--------SS-SSSS-SSS-SSSS-----------
---------------------------------------------------------------------------S----
---S-----S-------------------------------S--------------------------------------
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-------------S-------------S-----------------------------S------S--------------S
-------------------S--------S---------------------------------------------------
-------------------------S-----------------------------------------S------------
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---------------------------------S-------------------------------------S--------
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-----S--------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
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----------------------------------------------------S---------------------------
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------------------------------------------S----------S--------------------------
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>forward_100
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GCGGTAGACATGTCGACGAT------------------------------------------------------------
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>reverse_1200
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-------------------------------------------------------------------------------T
GATCTGATGGTTGCCGCTG-------------------------------------------------------------
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>forward_155
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-------------------------------------------------------ACGGCCTCATCTTGAACCAG-----
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>reverse_1229
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----------------------------TTACTTCGTGGCGGTGGAGA--------------------------------
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>forward_563
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---------------------------------------------------------------GGGGCCAAATCAAGTGG
AGA-----------------------------------------------------------------------------
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>reverse_2053
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----------------------------------------------------CCCCTGCTTCTCTTTTACCCT-------
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----------------------------------------------
