Multiple sequence alignment - TraesCS6B01G184900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G184900 chr6B 100.000 2401 0 0 1 2401 207958652 207956252 0.000000e+00 4434.0
1 TraesCS6B01G184900 chr6D 90.705 2410 163 28 1 2401 117359562 117361919 0.000000e+00 3153.0
2 TraesCS6B01G184900 chr6A 90.571 2100 125 30 1 2090 146481433 146479397 0.000000e+00 2713.0
3 TraesCS6B01G184900 chr6A 91.437 327 28 0 2075 2401 146479381 146479055 1.310000e-122 449.0
4 TraesCS6B01G184900 chr7A 97.222 36 1 0 2365 2400 167656813 167656778 7.170000e-06 62.1
5 TraesCS6B01G184900 chr7D 97.059 34 1 0 360 393 66392950 66392983 9.270000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G184900 chr6B 207956252 207958652 2400 True 4434 4434 100.000 1 2401 1 chr6B.!!$R1 2400
1 TraesCS6B01G184900 chr6D 117359562 117361919 2357 False 3153 3153 90.705 1 2401 1 chr6D.!!$F1 2400
2 TraesCS6B01G184900 chr6A 146479055 146481433 2378 True 1581 2713 91.004 1 2401 2 chr6A.!!$R1 2400

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
569 576 0.800012 TACGGTCTTTGCGATTTGCC 59.2 50.0 0.0 0.0 45.6 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1553 1560 0.732571 CTCGCGGCATATGGTTTGTT 59.267 50.0 6.13 0.0 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 9.784531 TCTATTCTTCCACCAGAATTTCATATC 57.215 33.333 1.43 0.00 40.04 1.63
90 91 7.830099 ATTCTTCCACCAGAATTTCATATCC 57.170 36.000 0.00 0.00 40.04 2.59
94 95 6.017211 TCCACCAGAATTTCATATCCACAT 57.983 37.500 0.00 0.00 0.00 3.21
137 138 5.472301 ACATCTGGACCCAAAGGAATAAT 57.528 39.130 0.00 0.00 36.73 1.28
145 146 6.156083 TGGACCCAAAGGAATAATTGGATTTC 59.844 38.462 6.12 0.55 36.72 2.17
172 174 1.468520 CAATGCTCCAAGTACAACCCG 59.531 52.381 0.00 0.00 0.00 5.28
270 273 5.014123 ACCTGGATTGTGAATAACCTCTGAA 59.986 40.000 0.00 0.00 0.00 3.02
356 361 7.375053 TGGCCTTTGTTCTTGTACATAAAATC 58.625 34.615 3.32 0.00 0.00 2.17
358 363 8.088365 GGCCTTTGTTCTTGTACATAAAATCTT 58.912 33.333 0.00 0.00 0.00 2.40
492 499 9.793252 CCAAATATTTCTATGGAGTTTTGACTG 57.207 33.333 0.00 0.00 34.82 3.51
494 501 5.904362 ATTTCTATGGAGTTTTGACTGCC 57.096 39.130 0.00 0.00 0.00 4.85
516 523 5.564848 GCCAATTCCTTTTGTGTTAGGAGAC 60.565 44.000 0.00 0.00 41.38 3.36
569 576 0.800012 TACGGTCTTTGCGATTTGCC 59.200 50.000 0.00 0.00 45.60 4.52
594 601 1.019673 CATCTCGATTTGGTGCCTGG 58.980 55.000 0.00 0.00 0.00 4.45
636 643 1.918262 TCACCTCGGAGTTCCCTACTA 59.082 52.381 4.02 0.00 37.17 1.82
644 651 4.834496 TCGGAGTTCCCTACTAAAACTTCA 59.166 41.667 0.00 0.00 37.17 3.02
649 656 6.296803 AGTTCCCTACTAAAACTTCACCTTG 58.703 40.000 0.00 0.00 34.56 3.61
655 662 6.819146 CCTACTAAAACTTCACCTTGGAGATC 59.181 42.308 0.00 0.00 0.00 2.75
671 678 3.139077 GAGATCCACGGAACACAACTTT 58.861 45.455 0.00 0.00 0.00 2.66
676 683 3.506455 TCCACGGAACACAACTTTGAAAA 59.494 39.130 0.00 0.00 0.00 2.29
679 686 5.685511 CCACGGAACACAACTTTGAAAATAG 59.314 40.000 0.00 0.00 0.00 1.73
680 687 6.262601 CACGGAACACAACTTTGAAAATAGT 58.737 36.000 0.00 0.00 0.00 2.12
681 688 7.411274 CACGGAACACAACTTTGAAAATAGTA 58.589 34.615 0.00 0.00 0.00 1.82
682 689 7.586300 CACGGAACACAACTTTGAAAATAGTAG 59.414 37.037 0.00 0.00 0.00 2.57
683 690 7.281549 ACGGAACACAACTTTGAAAATAGTAGT 59.718 33.333 0.00 0.00 0.00 2.73
684 691 8.767085 CGGAACACAACTTTGAAAATAGTAGTA 58.233 33.333 0.00 0.00 0.00 1.82
685 692 9.874215 GGAACACAACTTTGAAAATAGTAGTAC 57.126 33.333 0.00 0.00 0.00 2.73
708 715 5.998363 ACAGTAAAGACCTCCAATGAACTTC 59.002 40.000 0.00 0.00 0.00 3.01
744 751 2.125391 GCCAGCGCAGAGATGTCA 60.125 61.111 11.47 0.00 33.68 3.58
783 790 8.208718 TGCACATTTATTTCACATAGTACTCC 57.791 34.615 0.00 0.00 0.00 3.85
784 791 7.826744 TGCACATTTATTTCACATAGTACTCCA 59.173 33.333 0.00 0.00 0.00 3.86
785 792 8.673711 GCACATTTATTTCACATAGTACTCCAA 58.326 33.333 0.00 0.00 0.00 3.53
791 798 9.575868 TTATTTCACATAGTACTCCAAAAACCA 57.424 29.630 0.00 0.00 0.00 3.67
792 799 7.883391 TTTCACATAGTACTCCAAAAACCAA 57.117 32.000 0.00 0.00 0.00 3.67
793 800 6.870971 TCACATAGTACTCCAAAAACCAAC 57.129 37.500 0.00 0.00 0.00 3.77
794 801 6.358178 TCACATAGTACTCCAAAAACCAACA 58.642 36.000 0.00 0.00 0.00 3.33
795 802 7.001674 TCACATAGTACTCCAAAAACCAACAT 58.998 34.615 0.00 0.00 0.00 2.71
796 803 7.040755 TCACATAGTACTCCAAAAACCAACATG 60.041 37.037 0.00 0.00 0.00 3.21
797 804 4.584327 AGTACTCCAAAAACCAACATGC 57.416 40.909 0.00 0.00 0.00 4.06
798 805 2.507339 ACTCCAAAAACCAACATGCG 57.493 45.000 0.00 0.00 0.00 4.73
799 806 1.754226 ACTCCAAAAACCAACATGCGT 59.246 42.857 0.00 0.00 0.00 5.24
800 807 2.952978 ACTCCAAAAACCAACATGCGTA 59.047 40.909 0.00 0.00 0.00 4.42
801 808 3.572255 ACTCCAAAAACCAACATGCGTAT 59.428 39.130 0.00 0.00 0.00 3.06
810 817 3.062763 CCAACATGCGTATCCAGATCTC 58.937 50.000 0.00 0.00 0.00 2.75
889 896 3.266510 TGCGTATCCATTTCAGAAGCT 57.733 42.857 0.00 0.00 0.00 3.74
928 935 3.844577 ACACACTCCTCGTACATACAC 57.155 47.619 0.00 0.00 0.00 2.90
998 1005 2.687935 TCATCACATCTCGATCCAACGA 59.312 45.455 0.00 0.00 40.00 3.85
1060 1067 1.263356 TCTTACCTTGGGTGAGTCCG 58.737 55.000 8.07 0.00 39.82 4.79
1062 1069 2.173519 CTTACCTTGGGTGAGTCCGTA 58.826 52.381 0.00 0.00 35.04 4.02
1110 1117 3.057456 AGCACCTCTGTTGTACTACTTCG 60.057 47.826 8.88 0.00 0.00 3.79
1124 1131 8.004087 TGTACTACTTCGAAAATATGTAGCCT 57.996 34.615 16.97 5.94 35.38 4.58
1178 1185 6.804677 ACAAGTTTCATGCTGTTGTTGATTA 58.195 32.000 0.00 0.00 0.00 1.75
1217 1224 2.721231 GCCGAGTTGTGCAAGCAA 59.279 55.556 0.00 0.00 0.00 3.91
1354 1361 0.969894 ACTAAGAAGTGTGGCGAGCT 59.030 50.000 0.00 0.00 33.57 4.09
1423 1430 5.542779 ACTGAAGTGTACCTGAGATTTGAC 58.457 41.667 0.00 0.00 0.00 3.18
1553 1560 6.524101 ACTGAACCTTTTACAGCTGAAAAA 57.476 33.333 23.35 16.87 35.38 1.94
1570 1577 1.989430 AAAACAAACCATATGCCGCG 58.011 45.000 0.00 0.00 0.00 6.46
1590 1597 4.430007 GCGAGAAAAATTTAACCATCCCC 58.570 43.478 0.00 0.00 0.00 4.81
1661 1668 3.388308 GCATCGAGTAATGCTCACATCT 58.612 45.455 1.49 0.00 46.81 2.90
1746 1753 0.323178 ACTGGCAGGCAGAATGGAAG 60.323 55.000 29.85 2.37 35.86 3.46
1752 1759 2.289257 GCAGGCAGAATGGAAGCTTTTT 60.289 45.455 0.00 0.00 35.86 1.94
1834 1841 3.463944 GGACACATTTAGATACCGGTGG 58.536 50.000 19.93 0.00 0.00 4.61
1886 1893 6.046643 TGGCCCATGATTCCCTAATTAACTAT 59.953 38.462 0.00 0.00 0.00 2.12
1887 1894 6.378280 GGCCCATGATTCCCTAATTAACTATG 59.622 42.308 0.00 0.00 0.00 2.23
1888 1895 6.127619 GCCCATGATTCCCTAATTAACTATGC 60.128 42.308 0.00 0.00 0.00 3.14
1892 1899 7.817418 TGATTCCCTAATTAACTATGCAACC 57.183 36.000 0.00 0.00 0.00 3.77
1935 1947 5.041015 ATAGTGGTACTATTGGGTTTCCCA 58.959 41.667 3.10 3.10 41.54 4.37
2068 2080 3.388308 TGCGTTTTCCATGTTGATTTGG 58.612 40.909 0.00 0.00 0.00 3.28
2098 2141 6.763610 TGAACCAACAAAAGTTTGAAGTGTTT 59.236 30.769 10.66 1.31 40.55 2.83
2105 2148 6.149807 ACAAAAGTTTGAAGTGTTTACTCGGA 59.850 34.615 10.66 0.00 40.55 4.55
2144 2187 5.950883 TCTAGTTTAGACTCATGGAACACG 58.049 41.667 0.00 0.00 38.22 4.49
2168 2211 6.567321 CGACTTCGAAAGTACAAAGACCTCTA 60.567 42.308 0.00 0.00 43.03 2.43
2171 2214 7.446625 ACTTCGAAAGTACAAAGACCTCTAGTA 59.553 37.037 0.00 0.00 40.69 1.82
2198 2241 7.293073 ACATTTCTCATGGATATTTACTGGCT 58.707 34.615 0.00 0.00 0.00 4.75
2245 2290 9.961265 AGAAGATATGCACATTTATTTCACATG 57.039 29.630 0.00 0.00 0.00 3.21
2296 2341 6.598525 TGCACATAAATGTTCACTAACTTCG 58.401 36.000 0.00 0.00 39.39 3.79
2300 2345 4.483476 AAATGTTCACTAACTTCGTGGC 57.517 40.909 0.00 0.00 36.51 5.01
2318 2363 2.437281 TGGCATCCAAAAACCAACATGT 59.563 40.909 0.00 0.00 0.00 3.21
2324 2375 5.461032 TCCAAAAACCAACATGTGTATCC 57.539 39.130 0.00 0.00 0.00 2.59
2325 2376 4.895889 TCCAAAAACCAACATGTGTATCCA 59.104 37.500 0.00 0.00 0.00 3.41
2326 2377 5.541868 TCCAAAAACCAACATGTGTATCCAT 59.458 36.000 0.00 0.00 0.00 3.41
2327 2378 6.042552 TCCAAAAACCAACATGTGTATCCATT 59.957 34.615 0.00 0.00 0.00 3.16
2328 2379 6.709846 CCAAAAACCAACATGTGTATCCATTT 59.290 34.615 0.00 0.00 0.00 2.32
2329 2380 7.095271 CCAAAAACCAACATGTGTATCCATTTC 60.095 37.037 0.00 0.00 0.00 2.17
2330 2381 6.662865 AAACCAACATGTGTATCCATTTCA 57.337 33.333 0.00 0.00 0.00 2.69
2331 2382 6.855763 AACCAACATGTGTATCCATTTCAT 57.144 33.333 0.00 0.00 0.00 2.57
2363 2414 8.169977 TCTATGAATGAAATGCTACAAATCCC 57.830 34.615 0.00 0.00 0.00 3.85
2373 2425 3.844211 TGCTACAAATCCCTTGTACTCCT 59.156 43.478 0.00 0.00 46.75 3.69
2376 2428 4.302559 ACAAATCCCTTGTACTCCTTCC 57.697 45.455 0.00 0.00 46.75 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.532126 TGAGGTGCTCCTTTTTCTAGATGA 59.468 41.667 9.08 0.00 45.24 2.92
39 40 3.909430 CTGCAAGCTGAATGTCAAACAT 58.091 40.909 0.00 0.00 41.31 2.71
89 90 2.620115 GCACCCTATGACAATGATGTGG 59.380 50.000 0.00 0.00 40.74 4.17
90 91 3.314357 CAGCACCCTATGACAATGATGTG 59.686 47.826 0.00 0.00 40.74 3.21
94 95 2.195727 TCCAGCACCCTATGACAATGA 58.804 47.619 0.00 0.00 0.00 2.57
145 146 0.971386 ACTTGGAGCATTGCCTTTGG 59.029 50.000 4.70 0.00 0.00 3.28
154 155 0.690762 ACGGGTTGTACTTGGAGCAT 59.309 50.000 0.00 0.00 0.00 3.79
172 174 1.149148 GTCTGCGGAGTTCTTTCCAC 58.851 55.000 3.10 0.00 37.05 4.02
306 311 9.097257 CAAAAGCCAAAGAAAGAGAATACAAAA 57.903 29.630 0.00 0.00 0.00 2.44
379 384 1.569479 GAGGCTCACCGCAGAACAAC 61.569 60.000 10.25 0.00 42.76 3.32
387 392 3.758172 TTTTTGGAGGCTCACCGC 58.242 55.556 17.69 0.00 42.76 5.68
431 436 5.603813 TGGAAAACCTAACACTACCACTACT 59.396 40.000 0.00 0.00 0.00 2.57
492 499 4.522789 TCTCCTAACACAAAAGGAATTGGC 59.477 41.667 0.00 0.00 41.33 4.52
494 501 6.486657 TCTGTCTCCTAACACAAAAGGAATTG 59.513 38.462 0.00 0.00 41.33 2.32
541 548 7.781548 AATCGCAAAGACCGTACTTTATATT 57.218 32.000 4.27 3.23 37.91 1.28
543 550 6.455913 GCAAATCGCAAAGACCGTACTTTATA 60.456 38.462 4.27 0.00 41.79 0.98
554 561 3.801594 TGAAAAAGGCAAATCGCAAAGAC 59.198 39.130 0.00 0.00 45.17 3.01
569 576 4.082571 AGGCACCAAATCGAGATGAAAAAG 60.083 41.667 2.02 0.00 0.00 2.27
594 601 8.172484 GGTGAACACTTTAAAATTTTGTTGGTC 58.828 33.333 13.76 12.19 30.60 4.02
636 643 4.453480 TGGATCTCCAAGGTGAAGTTTT 57.547 40.909 0.00 0.00 44.35 2.43
649 656 1.002087 AGTTGTGTTCCGTGGATCTCC 59.998 52.381 0.00 0.00 0.00 3.71
655 662 3.495670 TTTCAAAGTTGTGTTCCGTGG 57.504 42.857 0.00 0.00 0.00 4.94
676 683 8.915036 CATTGGAGGTCTTTACTGTACTACTAT 58.085 37.037 0.00 0.00 0.00 2.12
679 686 7.166691 TCATTGGAGGTCTTTACTGTACTAC 57.833 40.000 0.00 0.00 0.00 2.73
680 687 7.453752 AGTTCATTGGAGGTCTTTACTGTACTA 59.546 37.037 0.00 0.00 0.00 1.82
681 688 6.270231 AGTTCATTGGAGGTCTTTACTGTACT 59.730 38.462 0.00 0.00 0.00 2.73
682 689 6.465084 AGTTCATTGGAGGTCTTTACTGTAC 58.535 40.000 0.00 0.00 0.00 2.90
683 690 6.681729 AGTTCATTGGAGGTCTTTACTGTA 57.318 37.500 0.00 0.00 0.00 2.74
684 691 5.568620 AGTTCATTGGAGGTCTTTACTGT 57.431 39.130 0.00 0.00 0.00 3.55
685 692 6.234177 AGAAGTTCATTGGAGGTCTTTACTG 58.766 40.000 5.50 0.00 0.00 2.74
686 693 6.271159 AGAGAAGTTCATTGGAGGTCTTTACT 59.729 38.462 5.50 0.00 0.00 2.24
687 694 6.468543 AGAGAAGTTCATTGGAGGTCTTTAC 58.531 40.000 5.50 0.00 0.00 2.01
708 715 5.233083 TGGCCAGTAAATATCCATGAGAG 57.767 43.478 0.00 0.00 0.00 3.20
744 751 7.902920 ATAAATGTGCATATCTTTTCCTGGT 57.097 32.000 0.00 0.00 0.00 4.00
775 782 4.214545 CGCATGTTGGTTTTTGGAGTACTA 59.785 41.667 0.00 0.00 0.00 1.82
780 787 2.507339 ACGCATGTTGGTTTTTGGAG 57.493 45.000 0.00 0.00 0.00 3.86
781 788 3.057174 GGATACGCATGTTGGTTTTTGGA 60.057 43.478 0.00 0.00 0.00 3.53
782 789 3.249917 GGATACGCATGTTGGTTTTTGG 58.750 45.455 0.00 0.00 0.00 3.28
783 790 3.906998 TGGATACGCATGTTGGTTTTTG 58.093 40.909 0.00 0.00 42.51 2.44
784 791 3.823873 TCTGGATACGCATGTTGGTTTTT 59.176 39.130 0.00 0.00 42.51 1.94
785 792 3.417101 TCTGGATACGCATGTTGGTTTT 58.583 40.909 0.00 0.00 42.51 2.43
786 793 3.066291 TCTGGATACGCATGTTGGTTT 57.934 42.857 0.00 0.00 42.51 3.27
787 794 2.779755 TCTGGATACGCATGTTGGTT 57.220 45.000 0.00 0.00 42.51 3.67
788 795 2.435805 AGATCTGGATACGCATGTTGGT 59.564 45.455 0.00 0.00 42.51 3.67
789 796 3.062763 GAGATCTGGATACGCATGTTGG 58.937 50.000 0.00 0.00 42.51 3.77
790 797 2.728318 CGAGATCTGGATACGCATGTTG 59.272 50.000 0.00 0.00 42.51 3.33
791 798 2.362397 ACGAGATCTGGATACGCATGTT 59.638 45.455 12.14 0.00 42.51 2.71
792 799 1.957177 ACGAGATCTGGATACGCATGT 59.043 47.619 12.14 0.00 42.51 3.21
793 800 2.713895 ACGAGATCTGGATACGCATG 57.286 50.000 12.14 0.00 42.51 4.06
794 801 2.162608 GCTACGAGATCTGGATACGCAT 59.837 50.000 12.14 0.00 42.51 4.73
795 802 1.535896 GCTACGAGATCTGGATACGCA 59.464 52.381 12.14 0.00 42.51 5.24
796 803 1.535896 TGCTACGAGATCTGGATACGC 59.464 52.381 12.14 8.21 42.51 4.42
797 804 3.365465 CCTTGCTACGAGATCTGGATACG 60.365 52.174 12.14 5.47 42.51 3.06
798 805 3.821600 TCCTTGCTACGAGATCTGGATAC 59.178 47.826 12.14 0.71 0.00 2.24
799 806 4.100279 TCCTTGCTACGAGATCTGGATA 57.900 45.455 12.14 0.02 0.00 2.59
800 807 2.950781 TCCTTGCTACGAGATCTGGAT 58.049 47.619 12.14 0.00 0.00 3.41
801 808 2.437085 TCCTTGCTACGAGATCTGGA 57.563 50.000 12.14 0.70 0.00 3.86
810 817 8.546244 CATTTATCTGCATATATCCTTGCTACG 58.454 37.037 0.00 0.00 39.60 3.51
889 896 9.098355 GAGTGTGTAGCATTTAATTCACAGATA 57.902 33.333 0.00 0.00 36.67 1.98
928 935 8.974060 TTTATATAGCTTGGGGTTCTAACTTG 57.026 34.615 0.00 0.00 0.00 3.16
998 1005 2.671070 CGACCTTGCCCTCCATGT 59.329 61.111 0.00 0.00 0.00 3.21
1007 1014 1.063166 GCTATTGCTGCGACCTTGC 59.937 57.895 0.00 0.00 36.03 4.01
1124 1131 4.980573 ACTAACACACTATTCTTGCCCAA 58.019 39.130 0.00 0.00 0.00 4.12
1167 1174 9.295825 ACCTACTCAATCAATTAATCAACAACA 57.704 29.630 0.00 0.00 0.00 3.33
1178 1185 4.521146 CCTCTGCACCTACTCAATCAATT 58.479 43.478 0.00 0.00 0.00 2.32
1217 1224 2.140717 CCTTTGAAAGTTCGGCTACGT 58.859 47.619 4.02 0.00 41.85 3.57
1553 1560 0.732571 CTCGCGGCATATGGTTTGTT 59.267 50.000 6.13 0.00 0.00 2.83
1569 1576 4.157105 ACGGGGATGGTTAAATTTTTCTCG 59.843 41.667 0.00 0.00 0.00 4.04
1570 1577 5.047590 ACACGGGGATGGTTAAATTTTTCTC 60.048 40.000 0.00 0.00 0.00 2.87
1590 1597 3.672867 AGAAAAACAACAGCAACAACACG 59.327 39.130 0.00 0.00 0.00 4.49
1680 1687 7.877003 ACATTTTGTACCGAATCATGTAAACA 58.123 30.769 0.00 0.00 0.00 2.83
1752 1759 6.095160 ACACACCAAACAAATACCGTAGAAAA 59.905 34.615 0.00 0.00 0.00 2.29
1755 1762 4.706035 ACACACCAAACAAATACCGTAGA 58.294 39.130 0.00 0.00 0.00 2.59
1762 1769 4.220821 ACACACCAACACACCAAACAAATA 59.779 37.500 0.00 0.00 0.00 1.40
1886 1893 8.278639 TCTATTCATATAGAAAAAGGGGTTGCA 58.721 33.333 0.00 0.00 39.77 4.08
1887 1894 8.691661 TCTATTCATATAGAAAAAGGGGTTGC 57.308 34.615 0.00 0.00 39.77 4.17
2068 2080 4.688413 TCAAACTTTTGTTGGTTCAAGCAC 59.312 37.500 0.00 0.00 42.67 4.40
2105 2148 6.997942 AAACTAGAGTTTGAGTAGGGAACT 57.002 37.500 6.85 0.00 45.55 3.01
2123 2166 5.475909 AGTCGTGTTCCATGAGTCTAAACTA 59.524 40.000 0.00 0.00 35.28 2.24
2144 2187 5.530712 AGAGGTCTTTGTACTTTCGAAGTC 58.469 41.667 0.00 0.00 41.77 3.01
2150 2193 9.708092 ATGTTTACTAGAGGTCTTTGTACTTTC 57.292 33.333 0.00 0.00 0.00 2.62
2171 2214 8.416329 GCCAGTAAATATCCATGAGAAATGTTT 58.584 33.333 0.00 0.00 0.00 2.83
2195 2238 1.001158 GGTGACATCTCTACGCTAGCC 60.001 57.143 9.66 0.00 0.00 3.93
2296 2341 2.611225 TGTTGGTTTTTGGATGCCAC 57.389 45.000 0.00 0.00 30.78 5.01
2300 2345 5.868801 GGATACACATGTTGGTTTTTGGATG 59.131 40.000 0.00 0.00 0.00 3.51
2327 2378 9.687210 GCATTTCATTCATAGATTGCTTATGAA 57.313 29.630 9.36 9.36 42.25 2.57
2328 2379 9.074576 AGCATTTCATTCATAGATTGCTTATGA 57.925 29.630 0.00 0.00 33.63 2.15
2331 2382 9.341078 TGTAGCATTTCATTCATAGATTGCTTA 57.659 29.630 0.00 0.00 36.68 3.09
2373 2425 3.073356 ACATGGAGTAAAAAGGACCGGAA 59.927 43.478 9.46 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.