Multiple sequence alignment - TraesCS6B01G182700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G182700 chr6B 100.000 2910 0 0 440 3349 204478118 204475209 0.000000e+00 5374
1 TraesCS6B01G182700 chr6B 98.174 219 3 1 443 660 10215135 10214917 6.780000e-102 381
2 TraesCS6B01G182700 chr6B 100.000 103 0 0 1 103 204478557 204478455 1.230000e-44 191
3 TraesCS6B01G182700 chr6B 99.029 103 1 0 1 103 10215518 10215416 5.710000e-43 185
4 TraesCS6B01G182700 chr6A 92.803 2098 92 15 995 3065 143453059 143450994 0.000000e+00 2983
5 TraesCS6B01G182700 chr6A 96.262 214 5 3 440 652 12298180 12297969 6.880000e-92 348
6 TraesCS6B01G182700 chr6A 78.978 509 85 13 2054 2560 583877009 583876521 8.960000e-86 327
7 TraesCS6B01G182700 chr6A 96.795 156 5 0 3187 3342 143450883 143450728 9.220000e-66 261
8 TraesCS6B01G182700 chr6A 99.029 103 1 0 1 103 48527259 48527361 5.710000e-43 185
9 TraesCS6B01G182700 chr6A 99.029 103 1 0 1 103 205097857 205097959 5.710000e-43 185
10 TraesCS6B01G182700 chr6A 98.058 103 2 0 1 103 12298910 12298808 2.650000e-41 180
11 TraesCS6B01G182700 chr6D 94.277 1293 56 8 1749 3027 115050784 115049496 0.000000e+00 1962
12 TraesCS6B01G182700 chr6D 95.658 760 30 2 995 1752 115051669 115050911 0.000000e+00 1218
13 TraesCS6B01G182700 chr6D 81.731 520 76 15 2046 2563 7275540 7276042 1.860000e-112 416
14 TraesCS6B01G182700 chr6D 98.844 173 2 0 3170 3342 115049493 115049321 3.250000e-80 309
15 TraesCS6B01G182700 chr6D 98.058 103 2 0 1 103 83254037 83254139 2.650000e-41 180
16 TraesCS6B01G182700 chr3A 99.524 210 1 0 440 649 740910403 740910612 1.890000e-102 383
17 TraesCS6B01G182700 chr3A 98.507 201 3 0 440 640 482186442 482186642 4.110000e-94 355
18 TraesCS6B01G182700 chr7B 98.611 216 2 1 440 654 603836367 603836152 6.780000e-102 381
19 TraesCS6B01G182700 chr7A 98.598 214 1 2 440 653 617485678 617485889 8.770000e-101 377
20 TraesCS6B01G182700 chr7A 78.571 560 91 17 2051 2607 671293437 671293970 3.200000e-90 342
21 TraesCS6B01G182700 chr7A 78.175 559 95 15 2051 2607 729968131 729968664 6.930000e-87 331
22 TraesCS6B01G182700 chr5B 98.131 214 4 0 440 653 547098692 547098905 1.130000e-99 374
23 TraesCS6B01G182700 chr3B 99.020 204 2 0 440 643 828405181 828404978 1.900000e-97 366
24 TraesCS6B01G182700 chr3B 99.020 102 1 0 2 103 828405506 828405405 2.050000e-42 183
25 TraesCS6B01G182700 chr2D 80.039 511 86 9 2054 2561 399963032 399962535 6.830000e-97 364
26 TraesCS6B01G182700 chr2D 98.058 103 2 0 1 103 599911468 599911366 2.650000e-41 180
27 TraesCS6B01G182700 chr2A 98.544 206 3 0 440 645 108031808 108032013 6.830000e-97 364
28 TraesCS6B01G182700 chr1A 80.713 477 74 13 2046 2520 79272207 79271747 4.110000e-94 355
29 TraesCS6B01G182700 chr1B 79.429 525 83 15 2046 2566 16063286 16062783 6.880000e-92 348
30 TraesCS6B01G182700 chr5D 98.058 103 2 0 1 103 503653836 503653734 2.650000e-41 180
31 TraesCS6B01G182700 chr5D 98.058 103 2 0 1 103 533243440 533243542 2.650000e-41 180


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G182700 chr6B 204475209 204478557 3348 True 2782.5 5374 100.000000 1 3349 2 chr6B.!!$R2 3348
1 TraesCS6B01G182700 chr6B 10214917 10215518 601 True 283.0 381 98.601500 1 660 2 chr6B.!!$R1 659
2 TraesCS6B01G182700 chr6A 143450728 143453059 2331 True 1622.0 2983 94.799000 995 3342 2 chr6A.!!$R3 2347
3 TraesCS6B01G182700 chr6A 12297969 12298910 941 True 264.0 348 97.160000 1 652 2 chr6A.!!$R2 651
4 TraesCS6B01G182700 chr6D 115049321 115051669 2348 True 1163.0 1962 96.259667 995 3342 3 chr6D.!!$R1 2347
5 TraesCS6B01G182700 chr6D 7275540 7276042 502 False 416.0 416 81.731000 2046 2563 1 chr6D.!!$F1 517
6 TraesCS6B01G182700 chr7A 671293437 671293970 533 False 342.0 342 78.571000 2051 2607 1 chr7A.!!$F2 556
7 TraesCS6B01G182700 chr7A 729968131 729968664 533 False 331.0 331 78.175000 2051 2607 1 chr7A.!!$F3 556
8 TraesCS6B01G182700 chr3B 828404978 828405506 528 True 274.5 366 99.020000 2 643 2 chr3B.!!$R1 641
9 TraesCS6B01G182700 chr1B 16062783 16063286 503 True 348.0 348 79.429000 2046 2566 1 chr1B.!!$R1 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
914 1253 0.037303 CACCACCAGCACCATCTTCT 59.963 55.0 0.0 0.0 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2533 3029 0.87439 TGCAATCACGCTCAAGAACC 59.126 50.0 0.0 0.0 0.0 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.988832 AGCAGGTTTTCACCCGGATA 59.011 50.000 0.73 0.00 45.63 2.59
653 992 4.890306 GGGAGGGAGGGAGGGAGC 62.890 77.778 0.00 0.00 0.00 4.70
654 993 3.773154 GGAGGGAGGGAGGGAGCT 61.773 72.222 0.00 0.00 0.00 4.09
655 994 2.123033 GAGGGAGGGAGGGAGCTC 60.123 72.222 4.71 4.71 0.00 4.09
666 1005 1.270907 AGGGAGCTCCTAATATGGCG 58.729 55.000 31.36 0.00 45.98 5.69
667 1006 0.250513 GGGAGCTCCTAATATGGCGG 59.749 60.000 31.36 0.00 35.95 6.13
668 1007 0.391793 GGAGCTCCTAATATGGCGGC 60.392 60.000 26.25 0.00 0.00 6.53
669 1008 0.391793 GAGCTCCTAATATGGCGGCC 60.392 60.000 13.32 13.32 0.00 6.13
670 1009 1.127567 AGCTCCTAATATGGCGGCCA 61.128 55.000 26.11 26.11 38.19 5.36
671 1010 0.955919 GCTCCTAATATGGCGGCCAC 60.956 60.000 26.48 4.06 35.80 5.01
672 1011 0.687354 CTCCTAATATGGCGGCCACT 59.313 55.000 26.48 15.78 35.80 4.00
673 1012 1.899814 CTCCTAATATGGCGGCCACTA 59.100 52.381 26.48 17.43 35.80 2.74
674 1013 2.501723 CTCCTAATATGGCGGCCACTAT 59.498 50.000 26.48 18.82 35.80 2.12
675 1014 2.910319 TCCTAATATGGCGGCCACTATT 59.090 45.455 26.48 25.94 35.80 1.73
676 1015 3.329520 TCCTAATATGGCGGCCACTATTT 59.670 43.478 26.48 16.81 35.80 1.40
677 1016 4.079253 CCTAATATGGCGGCCACTATTTT 58.921 43.478 26.48 15.09 35.80 1.82
678 1017 5.013287 TCCTAATATGGCGGCCACTATTTTA 59.987 40.000 26.48 12.21 35.80 1.52
679 1018 5.885912 CCTAATATGGCGGCCACTATTTTAT 59.114 40.000 26.48 14.10 35.80 1.40
680 1019 6.377146 CCTAATATGGCGGCCACTATTTTATT 59.623 38.462 26.48 22.82 35.80 1.40
681 1020 6.664428 AATATGGCGGCCACTATTTTATTT 57.336 33.333 26.48 6.77 35.80 1.40
682 1021 6.664428 ATATGGCGGCCACTATTTTATTTT 57.336 33.333 26.48 6.19 35.80 1.82
683 1022 7.768807 ATATGGCGGCCACTATTTTATTTTA 57.231 32.000 26.48 8.47 35.80 1.52
684 1023 6.664428 ATGGCGGCCACTATTTTATTTTAT 57.336 33.333 26.48 0.00 35.80 1.40
685 1024 5.837437 TGGCGGCCACTATTTTATTTTATG 58.163 37.500 19.77 0.00 0.00 1.90
686 1025 5.361285 TGGCGGCCACTATTTTATTTTATGT 59.639 36.000 19.77 0.00 0.00 2.29
687 1026 5.689961 GGCGGCCACTATTTTATTTTATGTG 59.310 40.000 15.62 0.00 0.00 3.21
688 1027 5.689961 GCGGCCACTATTTTATTTTATGTGG 59.310 40.000 2.24 0.00 44.26 4.17
709 1048 7.483307 TGTGGCAATATTTAATTCTCAGAAGC 58.517 34.615 0.00 0.00 0.00 3.86
710 1049 7.122501 TGTGGCAATATTTAATTCTCAGAAGCA 59.877 33.333 0.00 0.00 0.00 3.91
711 1050 7.975616 GTGGCAATATTTAATTCTCAGAAGCAA 59.024 33.333 0.00 0.00 0.00 3.91
712 1051 8.530311 TGGCAATATTTAATTCTCAGAAGCAAA 58.470 29.630 0.00 0.00 0.00 3.68
713 1052 9.538508 GGCAATATTTAATTCTCAGAAGCAAAT 57.461 29.630 11.72 11.72 0.00 2.32
723 1062 7.581213 TTCTCAGAAGCAAATAAAAAGGACA 57.419 32.000 0.00 0.00 0.00 4.02
724 1063 7.581213 TCTCAGAAGCAAATAAAAAGGACAA 57.419 32.000 0.00 0.00 0.00 3.18
725 1064 8.181904 TCTCAGAAGCAAATAAAAAGGACAAT 57.818 30.769 0.00 0.00 0.00 2.71
726 1065 8.641541 TCTCAGAAGCAAATAAAAAGGACAATT 58.358 29.630 0.00 0.00 0.00 2.32
727 1066 9.264719 CTCAGAAGCAAATAAAAAGGACAATTT 57.735 29.630 0.00 0.00 0.00 1.82
728 1067 9.260002 TCAGAAGCAAATAAAAAGGACAATTTC 57.740 29.630 0.00 0.00 0.00 2.17
729 1068 9.264719 CAGAAGCAAATAAAAAGGACAATTTCT 57.735 29.630 0.00 0.00 0.00 2.52
730 1069 9.836864 AGAAGCAAATAAAAAGGACAATTTCTT 57.163 25.926 0.00 0.00 0.00 2.52
731 1070 9.868389 GAAGCAAATAAAAAGGACAATTTCTTG 57.132 29.630 0.00 0.00 38.39 3.02
732 1071 9.612066 AAGCAAATAAAAAGGACAATTTCTTGA 57.388 25.926 0.00 0.00 36.20 3.02
733 1072 9.783081 AGCAAATAAAAAGGACAATTTCTTGAT 57.217 25.926 0.00 0.00 36.20 2.57
741 1080 9.538508 AAAAGGACAATTTCTTGATTCTCTTTG 57.461 29.630 0.00 0.00 36.20 2.77
742 1081 7.224522 AGGACAATTTCTTGATTCTCTTTGG 57.775 36.000 0.00 0.00 36.20 3.28
743 1082 7.006509 AGGACAATTTCTTGATTCTCTTTGGA 58.993 34.615 0.00 0.00 36.20 3.53
744 1083 7.506938 AGGACAATTTCTTGATTCTCTTTGGAA 59.493 33.333 0.00 0.00 36.20 3.53
745 1084 8.143835 GGACAATTTCTTGATTCTCTTTGGAAA 58.856 33.333 0.00 0.00 36.20 3.13
746 1085 9.533253 GACAATTTCTTGATTCTCTTTGGAAAA 57.467 29.630 0.00 0.00 36.20 2.29
815 1154 3.421567 GGCACCAAGTGAAGAGGTT 57.578 52.632 0.00 0.00 35.23 3.50
816 1155 1.239347 GGCACCAAGTGAAGAGGTTC 58.761 55.000 0.00 0.00 35.23 3.62
817 1156 1.202818 GGCACCAAGTGAAGAGGTTCT 60.203 52.381 0.00 0.00 35.23 3.01
818 1157 1.876156 GCACCAAGTGAAGAGGTTCTG 59.124 52.381 0.00 0.00 35.23 3.02
819 1158 1.876156 CACCAAGTGAAGAGGTTCTGC 59.124 52.381 0.00 0.00 35.23 4.26
820 1159 1.490490 ACCAAGTGAAGAGGTTCTGCA 59.510 47.619 0.00 0.00 33.38 4.41
821 1160 2.107204 ACCAAGTGAAGAGGTTCTGCAT 59.893 45.455 0.00 0.00 33.91 3.96
822 1161 2.486982 CCAAGTGAAGAGGTTCTGCATG 59.513 50.000 0.00 0.00 33.91 4.06
823 1162 3.144506 CAAGTGAAGAGGTTCTGCATGT 58.855 45.455 0.00 0.00 33.91 3.21
824 1163 2.775890 AGTGAAGAGGTTCTGCATGTG 58.224 47.619 0.00 0.00 33.91 3.21
825 1164 1.198637 GTGAAGAGGTTCTGCATGTGC 59.801 52.381 0.00 0.00 33.91 4.57
836 1175 3.066190 CATGTGCAGCCCCCACTG 61.066 66.667 0.00 0.00 40.80 3.66
837 1176 4.371417 ATGTGCAGCCCCCACTGG 62.371 66.667 0.00 0.00 38.16 4.00
839 1178 4.603535 GTGCAGCCCCCACTGGTT 62.604 66.667 0.00 0.00 38.16 3.67
840 1179 2.856494 TGCAGCCCCCACTGGTTA 60.856 61.111 0.00 0.00 38.16 2.85
841 1180 2.044946 GCAGCCCCCACTGGTTAG 60.045 66.667 0.00 0.00 38.16 2.34
842 1181 2.907179 GCAGCCCCCACTGGTTAGT 61.907 63.158 0.00 0.00 38.16 2.24
843 1182 1.559065 GCAGCCCCCACTGGTTAGTA 61.559 60.000 0.00 0.00 38.16 1.82
844 1183 0.541863 CAGCCCCCACTGGTTAGTAG 59.458 60.000 0.00 0.00 34.74 2.57
845 1184 0.620700 AGCCCCCACTGGTTAGTAGG 60.621 60.000 0.00 0.00 35.70 3.18
846 1185 0.619543 GCCCCCACTGGTTAGTAGGA 60.620 60.000 0.00 0.00 37.86 2.94
847 1186 1.961133 CCCCCACTGGTTAGTAGGAA 58.039 55.000 0.00 0.00 37.86 3.36
848 1187 2.271777 CCCCCACTGGTTAGTAGGAAA 58.728 52.381 0.00 0.00 37.86 3.13
849 1188 2.645797 CCCCCACTGGTTAGTAGGAAAA 59.354 50.000 0.00 0.00 37.86 2.29
850 1189 3.560668 CCCCCACTGGTTAGTAGGAAAAC 60.561 52.174 0.00 0.00 37.86 2.43
851 1190 3.329814 CCCCACTGGTTAGTAGGAAAACT 59.670 47.826 0.00 0.00 37.86 2.66
852 1191 4.533311 CCCCACTGGTTAGTAGGAAAACTA 59.467 45.833 0.00 0.00 37.86 2.24
866 1205 6.752285 AGGAAAACTACCCTACTACAACAA 57.248 37.500 0.00 0.00 0.00 2.83
867 1206 6.528321 AGGAAAACTACCCTACTACAACAAC 58.472 40.000 0.00 0.00 0.00 3.32
868 1207 6.100134 AGGAAAACTACCCTACTACAACAACA 59.900 38.462 0.00 0.00 0.00 3.33
869 1208 6.767423 GGAAAACTACCCTACTACAACAACAA 59.233 38.462 0.00 0.00 0.00 2.83
870 1209 7.282901 GGAAAACTACCCTACTACAACAACAAA 59.717 37.037 0.00 0.00 0.00 2.83
871 1210 8.756486 AAAACTACCCTACTACAACAACAAAT 57.244 30.769 0.00 0.00 0.00 2.32
872 1211 7.974482 AACTACCCTACTACAACAACAAATC 57.026 36.000 0.00 0.00 0.00 2.17
873 1212 7.069877 ACTACCCTACTACAACAACAAATCA 57.930 36.000 0.00 0.00 0.00 2.57
874 1213 7.686434 ACTACCCTACTACAACAACAAATCAT 58.314 34.615 0.00 0.00 0.00 2.45
875 1214 8.161425 ACTACCCTACTACAACAACAAATCATT 58.839 33.333 0.00 0.00 0.00 2.57
876 1215 7.833285 ACCCTACTACAACAACAAATCATTT 57.167 32.000 0.00 0.00 0.00 2.32
877 1216 8.245195 ACCCTACTACAACAACAAATCATTTT 57.755 30.769 0.00 0.00 0.00 1.82
878 1217 8.357402 ACCCTACTACAACAACAAATCATTTTC 58.643 33.333 0.00 0.00 0.00 2.29
879 1218 7.812669 CCCTACTACAACAACAAATCATTTTCC 59.187 37.037 0.00 0.00 0.00 3.13
880 1219 7.812669 CCTACTACAACAACAAATCATTTTCCC 59.187 37.037 0.00 0.00 0.00 3.97
881 1220 7.360113 ACTACAACAACAAATCATTTTCCCT 57.640 32.000 0.00 0.00 0.00 4.20
882 1221 7.791029 ACTACAACAACAAATCATTTTCCCTT 58.209 30.769 0.00 0.00 0.00 3.95
883 1222 8.264347 ACTACAACAACAAATCATTTTCCCTTT 58.736 29.630 0.00 0.00 0.00 3.11
884 1223 9.757227 CTACAACAACAAATCATTTTCCCTTTA 57.243 29.630 0.00 0.00 0.00 1.85
886 1225 9.454859 ACAACAACAAATCATTTTCCCTTTAAA 57.545 25.926 0.00 0.00 0.00 1.52
895 1234 4.901197 TTTTCCCTTTAAAATGCCTCCC 57.099 40.909 0.00 0.00 0.00 4.30
896 1235 3.551635 TTCCCTTTAAAATGCCTCCCA 57.448 42.857 0.00 0.00 0.00 4.37
897 1236 2.815158 TCCCTTTAAAATGCCTCCCAC 58.185 47.619 0.00 0.00 0.00 4.61
898 1237 1.831106 CCCTTTAAAATGCCTCCCACC 59.169 52.381 0.00 0.00 0.00 4.61
899 1238 2.534990 CCTTTAAAATGCCTCCCACCA 58.465 47.619 0.00 0.00 0.00 4.17
900 1239 2.233676 CCTTTAAAATGCCTCCCACCAC 59.766 50.000 0.00 0.00 0.00 4.16
901 1240 1.931635 TTAAAATGCCTCCCACCACC 58.068 50.000 0.00 0.00 0.00 4.61
902 1241 0.780637 TAAAATGCCTCCCACCACCA 59.219 50.000 0.00 0.00 0.00 4.17
903 1242 0.542702 AAAATGCCTCCCACCACCAG 60.543 55.000 0.00 0.00 0.00 4.00
904 1243 3.590466 AATGCCTCCCACCACCAGC 62.590 63.158 0.00 0.00 0.00 4.85
907 1246 4.351054 CCTCCCACCACCAGCACC 62.351 72.222 0.00 0.00 0.00 5.01
908 1247 3.569210 CTCCCACCACCAGCACCA 61.569 66.667 0.00 0.00 0.00 4.17
909 1248 2.858476 TCCCACCACCAGCACCAT 60.858 61.111 0.00 0.00 0.00 3.55
910 1249 2.361610 CCCACCACCAGCACCATC 60.362 66.667 0.00 0.00 0.00 3.51
911 1250 2.759114 CCACCACCAGCACCATCT 59.241 61.111 0.00 0.00 0.00 2.90
912 1251 1.075482 CCACCACCAGCACCATCTT 59.925 57.895 0.00 0.00 0.00 2.40
913 1252 0.962356 CCACCACCAGCACCATCTTC 60.962 60.000 0.00 0.00 0.00 2.87
914 1253 0.037303 CACCACCAGCACCATCTTCT 59.963 55.000 0.00 0.00 0.00 2.85
915 1254 0.326264 ACCACCAGCACCATCTTCTC 59.674 55.000 0.00 0.00 0.00 2.87
916 1255 0.617413 CCACCAGCACCATCTTCTCT 59.383 55.000 0.00 0.00 0.00 3.10
917 1256 1.406614 CCACCAGCACCATCTTCTCTC 60.407 57.143 0.00 0.00 0.00 3.20
918 1257 1.554160 CACCAGCACCATCTTCTCTCT 59.446 52.381 0.00 0.00 0.00 3.10
919 1258 1.830477 ACCAGCACCATCTTCTCTCTC 59.170 52.381 0.00 0.00 0.00 3.20
920 1259 1.138661 CCAGCACCATCTTCTCTCTCC 59.861 57.143 0.00 0.00 0.00 3.71
921 1260 1.138661 CAGCACCATCTTCTCTCTCCC 59.861 57.143 0.00 0.00 0.00 4.30
922 1261 1.008206 AGCACCATCTTCTCTCTCCCT 59.992 52.381 0.00 0.00 0.00 4.20
923 1262 1.412343 GCACCATCTTCTCTCTCCCTC 59.588 57.143 0.00 0.00 0.00 4.30
924 1263 2.038659 CACCATCTTCTCTCTCCCTCC 58.961 57.143 0.00 0.00 0.00 4.30
925 1264 1.936631 ACCATCTTCTCTCTCCCTCCT 59.063 52.381 0.00 0.00 0.00 3.69
926 1265 2.091333 ACCATCTTCTCTCTCCCTCCTC 60.091 54.545 0.00 0.00 0.00 3.71
927 1266 2.597455 CATCTTCTCTCTCCCTCCTCC 58.403 57.143 0.00 0.00 0.00 4.30
928 1267 0.930726 TCTTCTCTCTCCCTCCTCCC 59.069 60.000 0.00 0.00 0.00 4.30
929 1268 0.105709 CTTCTCTCTCCCTCCTCCCC 60.106 65.000 0.00 0.00 0.00 4.81
930 1269 0.556380 TTCTCTCTCCCTCCTCCCCT 60.556 60.000 0.00 0.00 0.00 4.79
931 1270 0.996762 TCTCTCTCCCTCCTCCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
932 1271 1.230650 TCTCTCCCTCCTCCCCTCA 60.231 63.158 0.00 0.00 0.00 3.86
933 1272 1.075600 CTCTCCCTCCTCCCCTCAC 60.076 68.421 0.00 0.00 0.00 3.51
934 1273 1.547755 TCTCCCTCCTCCCCTCACT 60.548 63.158 0.00 0.00 0.00 3.41
935 1274 1.156322 TCTCCCTCCTCCCCTCACTT 61.156 60.000 0.00 0.00 0.00 3.16
936 1275 0.689412 CTCCCTCCTCCCCTCACTTC 60.689 65.000 0.00 0.00 0.00 3.01
937 1276 1.690985 CCCTCCTCCCCTCACTTCC 60.691 68.421 0.00 0.00 0.00 3.46
938 1277 1.081092 CCTCCTCCCCTCACTTCCA 59.919 63.158 0.00 0.00 0.00 3.53
939 1278 0.327000 CCTCCTCCCCTCACTTCCAT 60.327 60.000 0.00 0.00 0.00 3.41
940 1279 1.589414 CTCCTCCCCTCACTTCCATT 58.411 55.000 0.00 0.00 0.00 3.16
941 1280 2.629639 CCTCCTCCCCTCACTTCCATTA 60.630 54.545 0.00 0.00 0.00 1.90
942 1281 2.703007 CTCCTCCCCTCACTTCCATTAG 59.297 54.545 0.00 0.00 0.00 1.73
943 1282 1.141858 CCTCCCCTCACTTCCATTAGC 59.858 57.143 0.00 0.00 0.00 3.09
944 1283 2.122768 CTCCCCTCACTTCCATTAGCT 58.877 52.381 0.00 0.00 0.00 3.32
945 1284 3.309296 CTCCCCTCACTTCCATTAGCTA 58.691 50.000 0.00 0.00 0.00 3.32
946 1285 3.309296 TCCCCTCACTTCCATTAGCTAG 58.691 50.000 0.00 0.00 0.00 3.42
947 1286 3.041946 CCCCTCACTTCCATTAGCTAGT 58.958 50.000 0.00 0.00 0.00 2.57
948 1287 4.078805 TCCCCTCACTTCCATTAGCTAGTA 60.079 45.833 0.00 0.00 0.00 1.82
949 1288 4.841246 CCCCTCACTTCCATTAGCTAGTAT 59.159 45.833 0.00 0.00 0.00 2.12
950 1289 5.308237 CCCCTCACTTCCATTAGCTAGTATT 59.692 44.000 0.00 0.00 0.00 1.89
951 1290 6.459923 CCCTCACTTCCATTAGCTAGTATTC 58.540 44.000 0.00 0.00 0.00 1.75
952 1291 6.042093 CCCTCACTTCCATTAGCTAGTATTCA 59.958 42.308 0.00 0.00 0.00 2.57
953 1292 7.151308 CCTCACTTCCATTAGCTAGTATTCAG 58.849 42.308 0.00 0.00 0.00 3.02
954 1293 7.055667 TCACTTCCATTAGCTAGTATTCAGG 57.944 40.000 0.00 0.00 0.00 3.86
955 1294 6.611642 TCACTTCCATTAGCTAGTATTCAGGT 59.388 38.462 0.00 0.00 0.00 4.00
956 1295 7.125811 TCACTTCCATTAGCTAGTATTCAGGTT 59.874 37.037 0.00 0.00 0.00 3.50
957 1296 8.421784 CACTTCCATTAGCTAGTATTCAGGTTA 58.578 37.037 0.00 0.00 0.00 2.85
958 1297 8.989131 ACTTCCATTAGCTAGTATTCAGGTTAA 58.011 33.333 0.00 0.00 0.00 2.01
959 1298 9.262358 CTTCCATTAGCTAGTATTCAGGTTAAC 57.738 37.037 0.00 0.00 0.00 2.01
960 1299 8.548880 TCCATTAGCTAGTATTCAGGTTAACT 57.451 34.615 5.42 0.00 0.00 2.24
961 1300 9.650714 TCCATTAGCTAGTATTCAGGTTAACTA 57.349 33.333 5.42 0.00 0.00 2.24
962 1301 9.915629 CCATTAGCTAGTATTCAGGTTAACTAG 57.084 37.037 5.42 4.40 42.74 2.57
963 1302 9.915629 CATTAGCTAGTATTCAGGTTAACTAGG 57.084 37.037 5.42 0.00 41.04 3.02
964 1303 9.878737 ATTAGCTAGTATTCAGGTTAACTAGGA 57.121 33.333 5.42 0.00 41.04 2.94
965 1304 7.826918 AGCTAGTATTCAGGTTAACTAGGAG 57.173 40.000 5.42 0.00 41.04 3.69
966 1305 6.778559 AGCTAGTATTCAGGTTAACTAGGAGG 59.221 42.308 5.42 0.00 41.04 4.30
967 1306 6.015265 GCTAGTATTCAGGTTAACTAGGAGGG 60.015 46.154 5.42 0.00 41.04 4.30
968 1307 6.101274 AGTATTCAGGTTAACTAGGAGGGA 57.899 41.667 5.42 0.00 0.00 4.20
969 1308 6.509386 AGTATTCAGGTTAACTAGGAGGGAA 58.491 40.000 5.42 0.61 0.00 3.97
970 1309 5.959583 ATTCAGGTTAACTAGGAGGGAAG 57.040 43.478 5.42 0.00 0.00 3.46
971 1310 4.687262 TCAGGTTAACTAGGAGGGAAGA 57.313 45.455 5.42 0.00 0.00 2.87
972 1311 4.611367 TCAGGTTAACTAGGAGGGAAGAG 58.389 47.826 5.42 0.00 0.00 2.85
973 1312 3.707102 CAGGTTAACTAGGAGGGAAGAGG 59.293 52.174 5.42 0.00 0.00 3.69
974 1313 3.601537 AGGTTAACTAGGAGGGAAGAGGA 59.398 47.826 5.42 0.00 0.00 3.71
975 1314 3.962063 GGTTAACTAGGAGGGAAGAGGAG 59.038 52.174 5.42 0.00 0.00 3.69
976 1315 4.325974 GGTTAACTAGGAGGGAAGAGGAGA 60.326 50.000 5.42 0.00 0.00 3.71
977 1316 3.680777 AACTAGGAGGGAAGAGGAGAG 57.319 52.381 0.00 0.00 0.00 3.20
978 1317 1.856920 ACTAGGAGGGAAGAGGAGAGG 59.143 57.143 0.00 0.00 0.00 3.69
979 1318 2.140224 CTAGGAGGGAAGAGGAGAGGA 58.860 57.143 0.00 0.00 0.00 3.71
980 1319 0.933700 AGGAGGGAAGAGGAGAGGAG 59.066 60.000 0.00 0.00 0.00 3.69
981 1320 0.930726 GGAGGGAAGAGGAGAGGAGA 59.069 60.000 0.00 0.00 0.00 3.71
982 1321 1.133482 GGAGGGAAGAGGAGAGGAGAG 60.133 61.905 0.00 0.00 0.00 3.20
983 1322 0.933700 AGGGAAGAGGAGAGGAGAGG 59.066 60.000 0.00 0.00 0.00 3.69
984 1323 0.930726 GGGAAGAGGAGAGGAGAGGA 59.069 60.000 0.00 0.00 0.00 3.71
985 1324 1.133482 GGGAAGAGGAGAGGAGAGGAG 60.133 61.905 0.00 0.00 0.00 3.69
986 1325 1.133482 GGAAGAGGAGAGGAGAGGAGG 60.133 61.905 0.00 0.00 0.00 4.30
987 1326 0.933700 AAGAGGAGAGGAGAGGAGGG 59.066 60.000 0.00 0.00 0.00 4.30
988 1327 0.047176 AGAGGAGAGGAGAGGAGGGA 59.953 60.000 0.00 0.00 0.00 4.20
989 1328 0.478507 GAGGAGAGGAGAGGAGGGAG 59.521 65.000 0.00 0.00 0.00 4.30
990 1329 0.254107 AGGAGAGGAGAGGAGGGAGT 60.254 60.000 0.00 0.00 0.00 3.85
991 1330 0.106217 GGAGAGGAGAGGAGGGAGTG 60.106 65.000 0.00 0.00 0.00 3.51
992 1331 0.629058 GAGAGGAGAGGAGGGAGTGT 59.371 60.000 0.00 0.00 0.00 3.55
993 1332 0.334676 AGAGGAGAGGAGGGAGTGTG 59.665 60.000 0.00 0.00 0.00 3.82
999 1338 1.190643 GAGGAGGGAGTGTGGAGAAG 58.809 60.000 0.00 0.00 0.00 2.85
1007 1346 3.390639 GGGAGTGTGGAGAAGATGATGAT 59.609 47.826 0.00 0.00 0.00 2.45
1026 1365 2.517402 AGGTCTCTAGAGCCGGCG 60.517 66.667 23.20 6.78 43.11 6.46
1047 1386 2.343758 GAGCACAAGGCCTCGTCA 59.656 61.111 5.23 0.00 46.50 4.35
1062 1401 1.084370 CGTCATCCTTCGGCAACCTC 61.084 60.000 0.00 0.00 0.00 3.85
1089 1428 2.683933 TTCCTCCGGGTCAGCTCC 60.684 66.667 0.00 0.00 0.00 4.70
1276 1615 2.039974 GTCATCACGCACATGGCCA 61.040 57.895 8.56 8.56 40.31 5.36
1401 1740 0.734253 CAGACGACTTCTTGAGCCGG 60.734 60.000 0.00 0.00 28.96 6.13
1449 1788 2.361119 TGGGCTCGACATCTACATGTAC 59.639 50.000 0.08 0.00 43.79 2.90
1545 1887 9.760660 CATACTGAAACAAATAAGCTACAAGAC 57.239 33.333 0.00 0.00 0.00 3.01
1674 2018 5.700402 TCCTTTAGGAATCTCCTTTCCTG 57.300 43.478 14.48 0.17 46.91 3.86
1688 2032 5.616270 TCCTTTCCTGGTTTTTATTTTGGC 58.384 37.500 0.00 0.00 0.00 4.52
1779 2253 9.990360 TTTCTTGTTTTATTTAGGTGGGAATTC 57.010 29.630 0.00 0.00 0.00 2.17
1939 2413 5.188434 AGGATGCCATGATTATGTATTCCG 58.812 41.667 0.00 0.00 32.77 4.30
1951 2425 1.992834 TATTCCGGGAGCACAGCCA 60.993 57.895 0.00 0.00 0.00 4.75
2063 2547 2.810274 CAGCATAGCACCTCGCATAAAT 59.190 45.455 0.00 0.00 46.13 1.40
2071 2555 6.064846 AGCACCTCGCATAAATATCTTTTG 57.935 37.500 0.00 0.00 46.13 2.44
2153 2643 3.577415 AGGAACAGTACACTAACCACTCC 59.423 47.826 0.00 0.00 0.00 3.85
2248 2738 0.873312 CAGATGCTCATGGACGACCG 60.873 60.000 0.00 0.00 39.42 4.79
2327 2817 2.496817 GCGCCGATGTCCTTCTCT 59.503 61.111 0.00 0.00 0.00 3.10
2502 2997 6.592220 GCTCGAATAAAAGAGAGGAAGAAAGT 59.408 38.462 0.00 0.00 36.65 2.66
2533 3029 0.948623 TGTCCACCGCAAGATGTTCG 60.949 55.000 0.00 0.00 43.02 3.95
2563 3059 3.620374 AGCGTGATTGCATTTCTCTGTAG 59.380 43.478 0.00 0.00 37.31 2.74
2609 3106 7.823149 GCACTTAGCAAAGAAATTTGATGAT 57.177 32.000 0.00 0.00 44.79 2.45
2622 3119 5.745312 ATTTGATGATGCGTCCTATCCTA 57.255 39.130 2.83 0.00 0.00 2.94
2637 3134 5.903589 TCCTATCCTAAAGTTTCGGGAAGAT 59.096 40.000 12.35 0.48 0.00 2.40
2640 3137 8.035984 CCTATCCTAAAGTTTCGGGAAGATATC 58.964 40.741 12.35 0.00 0.00 1.63
2655 3152 6.208204 GGGAAGATATCTGCTGCATGTTAAAT 59.792 38.462 10.68 0.00 0.00 1.40
2669 3166 5.006941 GCATGTTAAATGCTTAATTGGCCTG 59.993 40.000 3.32 0.00 41.52 4.85
2688 3186 7.079048 TGGCCTGGGTAAAAATATCCATTAAT 58.921 34.615 3.32 0.00 28.36 1.40
2724 3226 7.624549 TGAGGGATATCAGAATTTATAGGTGC 58.375 38.462 4.83 0.00 0.00 5.01
2749 3252 7.414540 GCCATTTCAGTACATTCCAGTTCTAAG 60.415 40.741 0.00 0.00 0.00 2.18
2803 3308 2.892852 TGAGGCAAAATCAAACTCTGGG 59.107 45.455 0.00 0.00 0.00 4.45
2804 3309 3.157087 GAGGCAAAATCAAACTCTGGGA 58.843 45.455 0.00 0.00 0.00 4.37
2928 3433 0.593128 GCCACCATCATTACCGATGC 59.407 55.000 0.00 0.00 41.27 3.91
3000 3505 8.106462 TCAATCTTGATGGTGTTATTAGGACAA 58.894 33.333 0.00 0.00 31.01 3.18
3010 3515 5.705905 GTGTTATTAGGACAAACTGGAAGCT 59.294 40.000 0.00 0.00 37.60 3.74
3011 3516 6.206829 GTGTTATTAGGACAAACTGGAAGCTT 59.793 38.462 0.00 0.00 37.60 3.74
3052 3557 5.748402 TGACATTCTCTTGGCACTATTCAT 58.252 37.500 0.00 0.00 26.74 2.57
3053 3558 5.819379 TGACATTCTCTTGGCACTATTCATC 59.181 40.000 0.00 0.00 26.74 2.92
3054 3559 5.748402 ACATTCTCTTGGCACTATTCATCA 58.252 37.500 0.00 0.00 0.00 3.07
3065 3570 9.571816 TTGGCACTATTCATCATTCATATACAA 57.428 29.630 0.00 0.00 0.00 2.41
3066 3571 9.002600 TGGCACTATTCATCATTCATATACAAC 57.997 33.333 0.00 0.00 0.00 3.32
3067 3572 8.454106 GGCACTATTCATCATTCATATACAACC 58.546 37.037 0.00 0.00 0.00 3.77
3068 3573 9.002600 GCACTATTCATCATTCATATACAACCA 57.997 33.333 0.00 0.00 0.00 3.67
3070 3575 9.208022 ACTATTCATCATTCATATACAACCACG 57.792 33.333 0.00 0.00 0.00 4.94
3090 3655 3.288964 CGGAGTAGTCTACTGAATGGGT 58.711 50.000 17.41 0.00 39.59 4.51
3093 3658 4.279145 GAGTAGTCTACTGAATGGGTGGA 58.721 47.826 17.41 0.00 39.59 4.02
3097 3662 1.833630 TCTACTGAATGGGTGGAGCAG 59.166 52.381 0.00 0.00 0.00 4.24
3099 3664 0.617413 ACTGAATGGGTGGAGCAGAG 59.383 55.000 0.00 0.00 0.00 3.35
3100 3665 0.747283 CTGAATGGGTGGAGCAGAGC 60.747 60.000 0.00 0.00 0.00 4.09
3101 3666 1.300963 GAATGGGTGGAGCAGAGCA 59.699 57.895 0.00 0.00 0.00 4.26
3104 3669 1.276859 ATGGGTGGAGCAGAGCATGA 61.277 55.000 0.00 0.00 0.00 3.07
3105 3670 1.153208 GGGTGGAGCAGAGCATGAG 60.153 63.158 0.00 0.00 0.00 2.90
3106 3671 1.818785 GGTGGAGCAGAGCATGAGC 60.819 63.158 0.00 0.00 42.56 4.26
3119 3684 2.736144 CATGAGCTGCAAAACACCAT 57.264 45.000 1.02 0.00 0.00 3.55
3120 3685 2.602878 CATGAGCTGCAAAACACCATC 58.397 47.619 1.02 0.00 0.00 3.51
3121 3686 1.985473 TGAGCTGCAAAACACCATCT 58.015 45.000 1.02 0.00 0.00 2.90
3122 3687 1.881973 TGAGCTGCAAAACACCATCTC 59.118 47.619 1.02 0.00 0.00 2.75
3123 3688 0.877071 AGCTGCAAAACACCATCTCG 59.123 50.000 1.02 0.00 0.00 4.04
3124 3689 0.730494 GCTGCAAAACACCATCTCGC 60.730 55.000 0.00 0.00 0.00 5.03
3125 3690 0.109597 CTGCAAAACACCATCTCGCC 60.110 55.000 0.00 0.00 0.00 5.54
3126 3691 0.821301 TGCAAAACACCATCTCGCCA 60.821 50.000 0.00 0.00 0.00 5.69
3127 3692 0.387239 GCAAAACACCATCTCGCCAC 60.387 55.000 0.00 0.00 0.00 5.01
3128 3693 0.240945 CAAAACACCATCTCGCCACC 59.759 55.000 0.00 0.00 0.00 4.61
3129 3694 0.110486 AAAACACCATCTCGCCACCT 59.890 50.000 0.00 0.00 0.00 4.00
3130 3695 0.606401 AAACACCATCTCGCCACCTG 60.606 55.000 0.00 0.00 0.00 4.00
3131 3696 2.124983 CACCATCTCGCCACCTGG 60.125 66.667 0.00 0.00 38.53 4.45
3132 3697 2.607750 ACCATCTCGCCACCTGGT 60.608 61.111 0.00 0.00 37.17 4.00
3133 3698 2.124983 CCATCTCGCCACCTGGTG 60.125 66.667 20.01 20.01 46.72 4.17
3142 3707 2.789409 GCCACCTGGTGAACTAGAAT 57.211 50.000 27.94 0.00 35.23 2.40
3143 3708 3.073274 GCCACCTGGTGAACTAGAATT 57.927 47.619 27.94 0.00 35.23 2.17
3144 3709 3.010420 GCCACCTGGTGAACTAGAATTC 58.990 50.000 27.94 0.00 35.23 2.17
3145 3710 3.559171 GCCACCTGGTGAACTAGAATTCA 60.559 47.826 27.94 0.00 35.23 2.57
3146 3711 4.848357 CCACCTGGTGAACTAGAATTCAT 58.152 43.478 27.94 0.00 40.60 2.57
3147 3712 5.256474 CCACCTGGTGAACTAGAATTCATT 58.744 41.667 27.94 0.00 40.60 2.57
3148 3713 6.414732 CCACCTGGTGAACTAGAATTCATTA 58.585 40.000 27.94 0.00 40.60 1.90
3149 3714 6.316390 CCACCTGGTGAACTAGAATTCATTAC 59.684 42.308 27.94 0.00 40.60 1.89
3150 3715 6.878923 CACCTGGTGAACTAGAATTCATTACA 59.121 38.462 22.33 0.00 40.60 2.41
3151 3716 7.390440 CACCTGGTGAACTAGAATTCATTACAA 59.610 37.037 22.33 0.00 40.60 2.41
3152 3717 8.109634 ACCTGGTGAACTAGAATTCATTACAAT 58.890 33.333 8.44 0.00 40.60 2.71
3153 3718 9.613428 CCTGGTGAACTAGAATTCATTACAATA 57.387 33.333 8.44 0.00 40.60 1.90
3155 3720 9.391006 TGGTGAACTAGAATTCATTACAATACC 57.609 33.333 8.44 6.96 40.60 2.73
3156 3721 9.391006 GGTGAACTAGAATTCATTACAATACCA 57.609 33.333 8.44 0.00 40.60 3.25
3320 3885 6.988522 TGAGCATCATCATTCAAATAATGGG 58.011 36.000 0.00 0.00 42.56 4.00
3342 3907 4.400567 GGGAGCAAATATCTGAAAGTGCTT 59.599 41.667 9.05 0.00 42.14 3.91
3343 3908 5.590259 GGGAGCAAATATCTGAAAGTGCTTA 59.410 40.000 9.05 0.00 42.14 3.09
3344 3909 6.238593 GGGAGCAAATATCTGAAAGTGCTTAG 60.239 42.308 9.05 0.00 42.14 2.18
3345 3910 6.238593 GGAGCAAATATCTGAAAGTGCTTAGG 60.239 42.308 9.05 0.00 42.14 2.69
3346 3911 6.418101 AGCAAATATCTGAAAGTGCTTAGGA 58.582 36.000 0.00 0.00 39.19 2.94
3347 3912 7.059156 AGCAAATATCTGAAAGTGCTTAGGAT 58.941 34.615 0.00 0.00 39.19 3.24
3348 3913 8.213679 AGCAAATATCTGAAAGTGCTTAGGATA 58.786 33.333 0.00 0.00 39.19 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.826157 GAGAGATGGAGGTCTTCGATCAT 59.174 47.826 9.19 0.00 41.86 2.45
620 959 3.039526 CCTCCCTCCCTCCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
653 992 0.687354 AGTGGCCGCCATATTAGGAG 59.313 55.000 16.96 0.00 35.28 3.69
654 993 2.018355 TAGTGGCCGCCATATTAGGA 57.982 50.000 16.96 0.00 35.28 2.94
655 994 3.350219 AATAGTGGCCGCCATATTAGG 57.650 47.619 16.96 0.00 35.28 2.69
657 996 7.768807 AAATAAAATAGTGGCCGCCATATTA 57.231 32.000 16.96 9.35 35.28 0.98
658 997 6.664428 AAATAAAATAGTGGCCGCCATATT 57.336 33.333 16.96 16.13 35.28 1.28
660 999 7.231722 ACATAAAATAAAATAGTGGCCGCCATA 59.768 33.333 16.96 9.48 35.28 2.74
661 1000 6.041523 ACATAAAATAAAATAGTGGCCGCCAT 59.958 34.615 16.96 0.69 35.28 4.40
662 1001 5.361285 ACATAAAATAAAATAGTGGCCGCCA 59.639 36.000 14.07 8.43 0.00 5.69
663 1002 5.689961 CACATAAAATAAAATAGTGGCCGCC 59.310 40.000 14.07 1.04 0.00 6.13
664 1003 5.689961 CCACATAAAATAAAATAGTGGCCGC 59.310 40.000 8.71 8.71 38.63 6.53
683 1022 8.139989 GCTTCTGAGAATTAAATATTGCCACAT 58.860 33.333 0.00 0.00 0.00 3.21
684 1023 7.122501 TGCTTCTGAGAATTAAATATTGCCACA 59.877 33.333 0.00 0.00 0.00 4.17
685 1024 7.483307 TGCTTCTGAGAATTAAATATTGCCAC 58.517 34.615 0.00 0.00 0.00 5.01
686 1025 7.643569 TGCTTCTGAGAATTAAATATTGCCA 57.356 32.000 0.00 0.00 0.00 4.92
687 1026 8.931385 TTTGCTTCTGAGAATTAAATATTGCC 57.069 30.769 0.00 0.00 0.00 4.52
697 1036 8.641541 TGTCCTTTTTATTTGCTTCTGAGAATT 58.358 29.630 0.00 0.00 0.00 2.17
698 1037 8.181904 TGTCCTTTTTATTTGCTTCTGAGAAT 57.818 30.769 0.00 0.00 0.00 2.40
699 1038 7.581213 TGTCCTTTTTATTTGCTTCTGAGAA 57.419 32.000 0.00 0.00 0.00 2.87
700 1039 7.581213 TTGTCCTTTTTATTTGCTTCTGAGA 57.419 32.000 0.00 0.00 0.00 3.27
701 1040 8.822652 AATTGTCCTTTTTATTTGCTTCTGAG 57.177 30.769 0.00 0.00 0.00 3.35
702 1041 9.260002 GAAATTGTCCTTTTTATTTGCTTCTGA 57.740 29.630 0.00 0.00 0.00 3.27
703 1042 9.264719 AGAAATTGTCCTTTTTATTTGCTTCTG 57.735 29.630 0.00 0.00 0.00 3.02
704 1043 9.836864 AAGAAATTGTCCTTTTTATTTGCTTCT 57.163 25.926 0.00 0.00 0.00 2.85
705 1044 9.868389 CAAGAAATTGTCCTTTTTATTTGCTTC 57.132 29.630 0.00 0.00 0.00 3.86
706 1045 9.612066 TCAAGAAATTGTCCTTTTTATTTGCTT 57.388 25.926 0.00 0.00 0.00 3.91
707 1046 9.783081 ATCAAGAAATTGTCCTTTTTATTTGCT 57.217 25.926 0.00 0.00 0.00 3.91
715 1054 9.538508 CAAAGAGAATCAAGAAATTGTCCTTTT 57.461 29.630 0.00 0.00 37.82 2.27
716 1055 8.146412 CCAAAGAGAATCAAGAAATTGTCCTTT 58.854 33.333 0.00 0.00 37.82 3.11
717 1056 7.506938 TCCAAAGAGAATCAAGAAATTGTCCTT 59.493 33.333 0.00 0.00 37.82 3.36
718 1057 7.006509 TCCAAAGAGAATCAAGAAATTGTCCT 58.993 34.615 0.00 0.00 37.82 3.85
719 1058 7.219484 TCCAAAGAGAATCAAGAAATTGTCC 57.781 36.000 0.00 0.00 37.82 4.02
720 1059 9.533253 TTTTCCAAAGAGAATCAAGAAATTGTC 57.467 29.630 0.00 0.00 37.82 3.18
786 1125 0.678950 CTTGGTGCCCCGATGTTTTT 59.321 50.000 0.00 0.00 0.00 1.94
787 1126 0.469144 ACTTGGTGCCCCGATGTTTT 60.469 50.000 0.00 0.00 0.00 2.43
788 1127 1.152830 ACTTGGTGCCCCGATGTTT 59.847 52.632 0.00 0.00 0.00 2.83
789 1128 1.603455 CACTTGGTGCCCCGATGTT 60.603 57.895 0.00 0.00 0.00 2.71
790 1129 2.034066 CACTTGGTGCCCCGATGT 59.966 61.111 0.00 0.00 0.00 3.06
791 1130 1.303236 TTCACTTGGTGCCCCGATG 60.303 57.895 0.00 0.00 32.98 3.84
792 1131 1.002134 CTTCACTTGGTGCCCCGAT 60.002 57.895 0.00 0.00 32.98 4.18
793 1132 2.111999 CTCTTCACTTGGTGCCCCGA 62.112 60.000 0.00 0.00 32.98 5.14
794 1133 1.672356 CTCTTCACTTGGTGCCCCG 60.672 63.158 0.00 0.00 32.98 5.73
795 1134 1.303643 CCTCTTCACTTGGTGCCCC 60.304 63.158 0.00 0.00 32.98 5.80
796 1135 0.178990 AACCTCTTCACTTGGTGCCC 60.179 55.000 0.00 0.00 33.89 5.36
797 1136 1.202818 AGAACCTCTTCACTTGGTGCC 60.203 52.381 0.00 0.00 33.89 5.01
798 1137 1.876156 CAGAACCTCTTCACTTGGTGC 59.124 52.381 0.00 0.00 33.89 5.01
799 1138 1.876156 GCAGAACCTCTTCACTTGGTG 59.124 52.381 0.00 0.00 33.89 4.17
800 1139 1.490490 TGCAGAACCTCTTCACTTGGT 59.510 47.619 0.00 0.00 35.29 3.67
801 1140 2.260844 TGCAGAACCTCTTCACTTGG 57.739 50.000 0.00 0.00 0.00 3.61
802 1141 3.058432 CACATGCAGAACCTCTTCACTTG 60.058 47.826 0.00 0.00 0.00 3.16
803 1142 3.144506 CACATGCAGAACCTCTTCACTT 58.855 45.455 0.00 0.00 0.00 3.16
804 1143 2.775890 CACATGCAGAACCTCTTCACT 58.224 47.619 0.00 0.00 0.00 3.41
805 1144 1.198637 GCACATGCAGAACCTCTTCAC 59.801 52.381 0.00 0.00 41.59 3.18
806 1145 1.527034 GCACATGCAGAACCTCTTCA 58.473 50.000 0.00 0.00 41.59 3.02
819 1158 3.066190 CAGTGGGGGCTGCACATG 61.066 66.667 3.46 0.00 0.00 3.21
820 1159 4.371417 CCAGTGGGGGCTGCACAT 62.371 66.667 3.46 0.00 35.28 3.21
822 1161 3.204467 TAACCAGTGGGGGCTGCAC 62.204 63.158 15.21 0.00 42.91 4.57
823 1162 2.856494 TAACCAGTGGGGGCTGCA 60.856 61.111 15.21 0.00 42.91 4.41
824 1163 1.559065 TACTAACCAGTGGGGGCTGC 61.559 60.000 15.21 0.00 42.91 5.25
825 1164 0.541863 CTACTAACCAGTGGGGGCTG 59.458 60.000 15.21 1.36 42.91 4.85
826 1165 0.620700 CCTACTAACCAGTGGGGGCT 60.621 60.000 15.21 0.00 46.91 5.19
827 1166 1.912971 CCTACTAACCAGTGGGGGC 59.087 63.158 15.21 0.00 46.91 5.80
831 1170 5.485620 GGTAGTTTTCCTACTAACCAGTGG 58.514 45.833 7.91 7.91 44.66 4.00
842 1181 7.289782 TGTTGTTGTAGTAGGGTAGTTTTCCTA 59.710 37.037 0.00 0.00 34.75 2.94
843 1182 6.100134 TGTTGTTGTAGTAGGGTAGTTTTCCT 59.900 38.462 0.00 0.00 37.18 3.36
844 1183 6.290605 TGTTGTTGTAGTAGGGTAGTTTTCC 58.709 40.000 0.00 0.00 0.00 3.13
845 1184 7.790823 TTGTTGTTGTAGTAGGGTAGTTTTC 57.209 36.000 0.00 0.00 0.00 2.29
846 1185 8.756486 ATTTGTTGTTGTAGTAGGGTAGTTTT 57.244 30.769 0.00 0.00 0.00 2.43
847 1186 7.994334 TGATTTGTTGTTGTAGTAGGGTAGTTT 59.006 33.333 0.00 0.00 0.00 2.66
848 1187 7.511268 TGATTTGTTGTTGTAGTAGGGTAGTT 58.489 34.615 0.00 0.00 0.00 2.24
849 1188 7.069877 TGATTTGTTGTTGTAGTAGGGTAGT 57.930 36.000 0.00 0.00 0.00 2.73
850 1189 8.561738 AATGATTTGTTGTTGTAGTAGGGTAG 57.438 34.615 0.00 0.00 0.00 3.18
851 1190 8.927675 AAATGATTTGTTGTTGTAGTAGGGTA 57.072 30.769 0.00 0.00 0.00 3.69
852 1191 7.833285 AAATGATTTGTTGTTGTAGTAGGGT 57.167 32.000 0.00 0.00 0.00 4.34
853 1192 7.812669 GGAAAATGATTTGTTGTTGTAGTAGGG 59.187 37.037 0.00 0.00 0.00 3.53
854 1193 7.812669 GGGAAAATGATTTGTTGTTGTAGTAGG 59.187 37.037 0.00 0.00 0.00 3.18
855 1194 8.576442 AGGGAAAATGATTTGTTGTTGTAGTAG 58.424 33.333 0.00 0.00 0.00 2.57
856 1195 8.472007 AGGGAAAATGATTTGTTGTTGTAGTA 57.528 30.769 0.00 0.00 0.00 1.82
857 1196 7.360113 AGGGAAAATGATTTGTTGTTGTAGT 57.640 32.000 0.00 0.00 0.00 2.73
858 1197 8.661352 AAAGGGAAAATGATTTGTTGTTGTAG 57.339 30.769 0.00 0.00 0.00 2.74
860 1199 9.454859 TTTAAAGGGAAAATGATTTGTTGTTGT 57.545 25.926 0.00 0.00 0.00 3.32
873 1212 4.849235 TGGGAGGCATTTTAAAGGGAAAAT 59.151 37.500 0.00 0.00 39.13 1.82
874 1213 4.041075 GTGGGAGGCATTTTAAAGGGAAAA 59.959 41.667 0.00 0.00 33.04 2.29
875 1214 3.580895 GTGGGAGGCATTTTAAAGGGAAA 59.419 43.478 0.00 0.00 0.00 3.13
876 1215 3.169908 GTGGGAGGCATTTTAAAGGGAA 58.830 45.455 0.00 0.00 0.00 3.97
877 1216 2.558800 GGTGGGAGGCATTTTAAAGGGA 60.559 50.000 0.00 0.00 0.00 4.20
878 1217 1.831106 GGTGGGAGGCATTTTAAAGGG 59.169 52.381 0.00 0.00 0.00 3.95
879 1218 2.233676 GTGGTGGGAGGCATTTTAAAGG 59.766 50.000 0.00 0.00 0.00 3.11
880 1219 2.233676 GGTGGTGGGAGGCATTTTAAAG 59.766 50.000 0.00 0.00 0.00 1.85
881 1220 2.252714 GGTGGTGGGAGGCATTTTAAA 58.747 47.619 0.00 0.00 0.00 1.52
882 1221 1.148027 TGGTGGTGGGAGGCATTTTAA 59.852 47.619 0.00 0.00 0.00 1.52
883 1222 0.780637 TGGTGGTGGGAGGCATTTTA 59.219 50.000 0.00 0.00 0.00 1.52
884 1223 0.542702 CTGGTGGTGGGAGGCATTTT 60.543 55.000 0.00 0.00 0.00 1.82
885 1224 1.077265 CTGGTGGTGGGAGGCATTT 59.923 57.895 0.00 0.00 0.00 2.32
886 1225 2.765969 CTGGTGGTGGGAGGCATT 59.234 61.111 0.00 0.00 0.00 3.56
887 1226 4.052518 GCTGGTGGTGGGAGGCAT 62.053 66.667 0.00 0.00 0.00 4.40
890 1229 4.351054 GGTGCTGGTGGTGGGAGG 62.351 72.222 0.00 0.00 0.00 4.30
891 1230 2.826777 GATGGTGCTGGTGGTGGGAG 62.827 65.000 0.00 0.00 0.00 4.30
892 1231 2.858476 ATGGTGCTGGTGGTGGGA 60.858 61.111 0.00 0.00 0.00 4.37
893 1232 2.361610 GATGGTGCTGGTGGTGGG 60.362 66.667 0.00 0.00 0.00 4.61
894 1233 0.962356 GAAGATGGTGCTGGTGGTGG 60.962 60.000 0.00 0.00 0.00 4.61
895 1234 0.037303 AGAAGATGGTGCTGGTGGTG 59.963 55.000 0.00 0.00 0.00 4.17
896 1235 0.326264 GAGAAGATGGTGCTGGTGGT 59.674 55.000 0.00 0.00 0.00 4.16
897 1236 0.617413 AGAGAAGATGGTGCTGGTGG 59.383 55.000 0.00 0.00 0.00 4.61
898 1237 1.554160 AGAGAGAAGATGGTGCTGGTG 59.446 52.381 0.00 0.00 0.00 4.17
899 1238 1.830477 GAGAGAGAAGATGGTGCTGGT 59.170 52.381 0.00 0.00 0.00 4.00
900 1239 1.138661 GGAGAGAGAAGATGGTGCTGG 59.861 57.143 0.00 0.00 0.00 4.85
901 1240 1.138661 GGGAGAGAGAAGATGGTGCTG 59.861 57.143 0.00 0.00 0.00 4.41
902 1241 1.008206 AGGGAGAGAGAAGATGGTGCT 59.992 52.381 0.00 0.00 0.00 4.40
903 1242 1.412343 GAGGGAGAGAGAAGATGGTGC 59.588 57.143 0.00 0.00 0.00 5.01
904 1243 2.038659 GGAGGGAGAGAGAAGATGGTG 58.961 57.143 0.00 0.00 0.00 4.17
905 1244 1.936631 AGGAGGGAGAGAGAAGATGGT 59.063 52.381 0.00 0.00 0.00 3.55
906 1245 2.597455 GAGGAGGGAGAGAGAAGATGG 58.403 57.143 0.00 0.00 0.00 3.51
907 1246 2.597455 GGAGGAGGGAGAGAGAAGATG 58.403 57.143 0.00 0.00 0.00 2.90
908 1247 1.503347 GGGAGGAGGGAGAGAGAAGAT 59.497 57.143 0.00 0.00 0.00 2.40
909 1248 0.930726 GGGAGGAGGGAGAGAGAAGA 59.069 60.000 0.00 0.00 0.00 2.87
910 1249 0.105709 GGGGAGGAGGGAGAGAGAAG 60.106 65.000 0.00 0.00 0.00 2.85
911 1250 0.556380 AGGGGAGGAGGGAGAGAGAA 60.556 60.000 0.00 0.00 0.00 2.87
912 1251 0.996762 GAGGGGAGGAGGGAGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
913 1252 1.292941 TGAGGGGAGGAGGGAGAGAG 61.293 65.000 0.00 0.00 0.00 3.20
914 1253 1.230650 TGAGGGGAGGAGGGAGAGA 60.231 63.158 0.00 0.00 0.00 3.10
915 1254 1.075600 GTGAGGGGAGGAGGGAGAG 60.076 68.421 0.00 0.00 0.00 3.20
916 1255 1.156322 AAGTGAGGGGAGGAGGGAGA 61.156 60.000 0.00 0.00 0.00 3.71
917 1256 0.689412 GAAGTGAGGGGAGGAGGGAG 60.689 65.000 0.00 0.00 0.00 4.30
918 1257 1.392534 GAAGTGAGGGGAGGAGGGA 59.607 63.158 0.00 0.00 0.00 4.20
919 1258 1.690985 GGAAGTGAGGGGAGGAGGG 60.691 68.421 0.00 0.00 0.00 4.30
920 1259 0.327000 ATGGAAGTGAGGGGAGGAGG 60.327 60.000 0.00 0.00 0.00 4.30
921 1260 1.589414 AATGGAAGTGAGGGGAGGAG 58.411 55.000 0.00 0.00 0.00 3.69
922 1261 2.764269 CTAATGGAAGTGAGGGGAGGA 58.236 52.381 0.00 0.00 0.00 3.71
923 1262 1.141858 GCTAATGGAAGTGAGGGGAGG 59.858 57.143 0.00 0.00 0.00 4.30
924 1263 2.122768 AGCTAATGGAAGTGAGGGGAG 58.877 52.381 0.00 0.00 0.00 4.30
925 1264 2.270434 AGCTAATGGAAGTGAGGGGA 57.730 50.000 0.00 0.00 0.00 4.81
926 1265 3.041946 ACTAGCTAATGGAAGTGAGGGG 58.958 50.000 0.00 0.00 0.00 4.79
927 1266 6.042093 TGAATACTAGCTAATGGAAGTGAGGG 59.958 42.308 0.00 0.00 0.00 4.30
928 1267 7.055667 TGAATACTAGCTAATGGAAGTGAGG 57.944 40.000 0.00 0.00 0.00 3.86
929 1268 7.151308 CCTGAATACTAGCTAATGGAAGTGAG 58.849 42.308 0.00 0.00 0.00 3.51
930 1269 6.611642 ACCTGAATACTAGCTAATGGAAGTGA 59.388 38.462 0.00 0.00 0.00 3.41
931 1270 6.821388 ACCTGAATACTAGCTAATGGAAGTG 58.179 40.000 0.00 0.00 0.00 3.16
932 1271 7.439108 AACCTGAATACTAGCTAATGGAAGT 57.561 36.000 0.00 0.00 0.00 3.01
933 1272 9.262358 GTTAACCTGAATACTAGCTAATGGAAG 57.738 37.037 0.00 0.00 0.00 3.46
934 1273 8.989131 AGTTAACCTGAATACTAGCTAATGGAA 58.011 33.333 0.88 0.00 0.00 3.53
935 1274 8.548880 AGTTAACCTGAATACTAGCTAATGGA 57.451 34.615 0.88 0.00 0.00 3.41
936 1275 9.915629 CTAGTTAACCTGAATACTAGCTAATGG 57.084 37.037 0.88 0.00 35.25 3.16
937 1276 9.915629 CCTAGTTAACCTGAATACTAGCTAATG 57.084 37.037 0.88 0.00 39.01 1.90
938 1277 9.878737 TCCTAGTTAACCTGAATACTAGCTAAT 57.121 33.333 0.88 0.00 39.01 1.73
939 1278 9.352191 CTCCTAGTTAACCTGAATACTAGCTAA 57.648 37.037 0.88 0.00 39.01 3.09
940 1279 7.943447 CCTCCTAGTTAACCTGAATACTAGCTA 59.057 40.741 0.88 0.00 39.01 3.32
941 1280 6.778559 CCTCCTAGTTAACCTGAATACTAGCT 59.221 42.308 0.88 0.00 39.01 3.32
942 1281 6.015265 CCCTCCTAGTTAACCTGAATACTAGC 60.015 46.154 0.88 0.00 39.01 3.42
943 1282 7.296098 TCCCTCCTAGTTAACCTGAATACTAG 58.704 42.308 0.88 0.00 39.69 2.57
944 1283 7.229951 TCCCTCCTAGTTAACCTGAATACTA 57.770 40.000 0.88 0.00 0.00 1.82
945 1284 6.101274 TCCCTCCTAGTTAACCTGAATACT 57.899 41.667 0.88 0.00 0.00 2.12
946 1285 6.610425 TCTTCCCTCCTAGTTAACCTGAATAC 59.390 42.308 0.88 0.00 0.00 1.89
947 1286 6.748969 TCTTCCCTCCTAGTTAACCTGAATA 58.251 40.000 0.88 0.00 0.00 1.75
948 1287 5.600749 TCTTCCCTCCTAGTTAACCTGAAT 58.399 41.667 0.88 0.00 0.00 2.57
949 1288 5.019657 TCTTCCCTCCTAGTTAACCTGAA 57.980 43.478 0.88 0.00 0.00 3.02
950 1289 4.572223 CCTCTTCCCTCCTAGTTAACCTGA 60.572 50.000 0.88 0.00 0.00 3.86
951 1290 3.707102 CCTCTTCCCTCCTAGTTAACCTG 59.293 52.174 0.88 0.00 0.00 4.00
952 1291 3.601537 TCCTCTTCCCTCCTAGTTAACCT 59.398 47.826 0.88 0.00 0.00 3.50
953 1292 3.962063 CTCCTCTTCCCTCCTAGTTAACC 59.038 52.174 0.88 0.00 0.00 2.85
954 1293 4.869451 TCTCCTCTTCCCTCCTAGTTAAC 58.131 47.826 0.00 0.00 0.00 2.01
955 1294 4.079096 CCTCTCCTCTTCCCTCCTAGTTAA 60.079 50.000 0.00 0.00 0.00 2.01
956 1295 3.464080 CCTCTCCTCTTCCCTCCTAGTTA 59.536 52.174 0.00 0.00 0.00 2.24
957 1296 2.246327 CCTCTCCTCTTCCCTCCTAGTT 59.754 54.545 0.00 0.00 0.00 2.24
958 1297 1.856920 CCTCTCCTCTTCCCTCCTAGT 59.143 57.143 0.00 0.00 0.00 2.57
959 1298 2.108250 CTCCTCTCCTCTTCCCTCCTAG 59.892 59.091 0.00 0.00 0.00 3.02
960 1299 2.140224 CTCCTCTCCTCTTCCCTCCTA 58.860 57.143 0.00 0.00 0.00 2.94
961 1300 0.933700 CTCCTCTCCTCTTCCCTCCT 59.066 60.000 0.00 0.00 0.00 3.69
962 1301 0.930726 TCTCCTCTCCTCTTCCCTCC 59.069 60.000 0.00 0.00 0.00 4.30
963 1302 1.133482 CCTCTCCTCTCCTCTTCCCTC 60.133 61.905 0.00 0.00 0.00 4.30
964 1303 0.933700 CCTCTCCTCTCCTCTTCCCT 59.066 60.000 0.00 0.00 0.00 4.20
965 1304 0.930726 TCCTCTCCTCTCCTCTTCCC 59.069 60.000 0.00 0.00 0.00 3.97
966 1305 1.133482 CCTCCTCTCCTCTCCTCTTCC 60.133 61.905 0.00 0.00 0.00 3.46
967 1306 1.133482 CCCTCCTCTCCTCTCCTCTTC 60.133 61.905 0.00 0.00 0.00 2.87
968 1307 0.933700 CCCTCCTCTCCTCTCCTCTT 59.066 60.000 0.00 0.00 0.00 2.85
969 1308 0.047176 TCCCTCCTCTCCTCTCCTCT 59.953 60.000 0.00 0.00 0.00 3.69
970 1309 0.478507 CTCCCTCCTCTCCTCTCCTC 59.521 65.000 0.00 0.00 0.00 3.71
971 1310 0.254107 ACTCCCTCCTCTCCTCTCCT 60.254 60.000 0.00 0.00 0.00 3.69
972 1311 0.106217 CACTCCCTCCTCTCCTCTCC 60.106 65.000 0.00 0.00 0.00 3.71
973 1312 0.629058 ACACTCCCTCCTCTCCTCTC 59.371 60.000 0.00 0.00 0.00 3.20
974 1313 0.334676 CACACTCCCTCCTCTCCTCT 59.665 60.000 0.00 0.00 0.00 3.69
975 1314 0.686112 CCACACTCCCTCCTCTCCTC 60.686 65.000 0.00 0.00 0.00 3.71
976 1315 1.149782 TCCACACTCCCTCCTCTCCT 61.150 60.000 0.00 0.00 0.00 3.69
977 1316 0.686112 CTCCACACTCCCTCCTCTCC 60.686 65.000 0.00 0.00 0.00 3.71
978 1317 0.333312 TCTCCACACTCCCTCCTCTC 59.667 60.000 0.00 0.00 0.00 3.20
979 1318 0.787084 TTCTCCACACTCCCTCCTCT 59.213 55.000 0.00 0.00 0.00 3.69
980 1319 1.190643 CTTCTCCACACTCCCTCCTC 58.809 60.000 0.00 0.00 0.00 3.71
981 1320 0.787084 TCTTCTCCACACTCCCTCCT 59.213 55.000 0.00 0.00 0.00 3.69
982 1321 1.484240 CATCTTCTCCACACTCCCTCC 59.516 57.143 0.00 0.00 0.00 4.30
983 1322 2.461695 TCATCTTCTCCACACTCCCTC 58.538 52.381 0.00 0.00 0.00 4.30
984 1323 2.630889 TCATCTTCTCCACACTCCCT 57.369 50.000 0.00 0.00 0.00 4.20
985 1324 2.768527 TCATCATCTTCTCCACACTCCC 59.231 50.000 0.00 0.00 0.00 4.30
986 1325 4.100653 TCATCATCATCTTCTCCACACTCC 59.899 45.833 0.00 0.00 0.00 3.85
987 1326 5.273674 TCATCATCATCTTCTCCACACTC 57.726 43.478 0.00 0.00 0.00 3.51
988 1327 4.101274 CCTCATCATCATCTTCTCCACACT 59.899 45.833 0.00 0.00 0.00 3.55
989 1328 4.141756 ACCTCATCATCATCTTCTCCACAC 60.142 45.833 0.00 0.00 0.00 3.82
990 1329 4.035814 ACCTCATCATCATCTTCTCCACA 58.964 43.478 0.00 0.00 0.00 4.17
991 1330 4.344679 AGACCTCATCATCATCTTCTCCAC 59.655 45.833 0.00 0.00 0.00 4.02
992 1331 4.554683 AGACCTCATCATCATCTTCTCCA 58.445 43.478 0.00 0.00 0.00 3.86
993 1332 4.834496 AGAGACCTCATCATCATCTTCTCC 59.166 45.833 0.00 0.00 30.55 3.71
999 1338 4.158394 GGCTCTAGAGACCTCATCATCATC 59.842 50.000 24.24 0.00 0.00 2.92
1007 1346 1.454111 GCCGGCTCTAGAGACCTCA 60.454 63.158 24.24 0.00 30.97 3.86
1035 1374 0.807667 CGAAGGATGACGAGGCCTTG 60.808 60.000 19.26 19.26 41.85 3.61
1089 1428 4.785453 GGTGGCTTGGGCTCGGAG 62.785 72.222 0.00 0.00 38.73 4.63
1223 1562 1.450669 GAGAGCTCGTCCTCCTCGT 60.451 63.158 8.37 0.00 32.17 4.18
1314 1653 1.803117 GTCGCCGAACCCGAAGTAC 60.803 63.158 0.00 0.00 36.36 2.73
1374 1713 4.421479 AAGTCGTCTGCCCTCGCG 62.421 66.667 0.00 0.00 38.08 5.87
1545 1887 6.312426 GTGAGATTCCTGAAGGATTATATGCG 59.688 42.308 0.00 0.00 44.98 4.73
1617 1961 9.561069 AGCTAAAATTCTCACAAACTTCTTAGA 57.439 29.630 0.00 0.00 0.00 2.10
1674 2018 4.509970 GTCCACACAGCCAAAATAAAAACC 59.490 41.667 0.00 0.00 0.00 3.27
1779 2253 5.615289 TCTCTGAGAAAGGAAGGTGAAAAG 58.385 41.667 4.57 0.00 0.00 2.27
1939 2413 1.228245 TGAACTTGGCTGTGCTCCC 60.228 57.895 0.00 0.00 0.00 4.30
1951 2425 6.476378 TGCTTTCTTAAGGATAGCTGAACTT 58.524 36.000 18.54 0.00 45.17 2.66
2063 2547 6.097270 AGCTATGCTTGCCATTTCAAAAGATA 59.903 34.615 0.00 0.00 33.89 1.98
2071 2555 2.034305 CAGGAGCTATGCTTGCCATTTC 59.966 50.000 0.00 0.00 39.88 2.17
2153 2643 5.108517 GTCAAGAGCAGAAGAGAGGTAATG 58.891 45.833 0.00 0.00 0.00 1.90
2502 2997 1.710816 GGTGGACATGACCCCAAAAA 58.289 50.000 11.80 0.00 33.69 1.94
2533 3029 0.874390 TGCAATCACGCTCAAGAACC 59.126 50.000 0.00 0.00 0.00 3.62
2536 3032 3.076621 AGAAATGCAATCACGCTCAAGA 58.923 40.909 0.00 0.00 0.00 3.02
2563 3059 2.310538 AGCATAATTACCCCTGCTTGC 58.689 47.619 5.63 1.19 42.03 4.01
2608 3105 4.369182 CGAAACTTTAGGATAGGACGCAT 58.631 43.478 0.00 0.00 0.00 4.73
2609 3106 3.429822 CCGAAACTTTAGGATAGGACGCA 60.430 47.826 0.00 0.00 0.00 5.24
2622 3119 4.878397 CAGCAGATATCTTCCCGAAACTTT 59.122 41.667 1.33 0.00 0.00 2.66
2637 3134 5.840243 AAGCATTTAACATGCAGCAGATA 57.160 34.783 18.49 0.00 46.77 1.98
2640 3137 6.237996 CCAATTAAGCATTTAACATGCAGCAG 60.238 38.462 18.49 0.00 46.77 4.24
2655 3152 2.909504 TTACCCAGGCCAATTAAGCA 57.090 45.000 5.01 0.00 0.00 3.91
2708 3206 7.118723 ACTGAAATGGCACCTATAAATTCTGA 58.881 34.615 0.00 0.00 0.00 3.27
2724 3226 7.414540 GCTTAGAACTGGAATGTACTGAAATGG 60.415 40.741 0.00 0.00 0.00 3.16
2749 3252 2.977914 TCTGCTGTGATTTACCTGAGC 58.022 47.619 0.00 0.00 0.00 4.26
2803 3308 3.861131 GCATGGACCATACGGATGTACTC 60.861 52.174 6.67 0.00 35.59 2.59
2804 3309 2.037251 GCATGGACCATACGGATGTACT 59.963 50.000 6.67 0.00 35.59 2.73
2928 3433 2.185004 AAATCGTGACCACAAGGGAG 57.815 50.000 0.85 0.00 41.15 4.30
3000 3505 7.069950 AGGATTGAGTTTTAAAAGCTTCCAGTT 59.930 33.333 0.00 0.00 0.00 3.16
3010 3515 9.912634 GAATGTCATCAGGATTGAGTTTTAAAA 57.087 29.630 0.00 0.00 36.61 1.52
3011 3516 9.300681 AGAATGTCATCAGGATTGAGTTTTAAA 57.699 29.630 0.00 0.00 36.61 1.52
3052 3557 5.607939 ACTCCGTGGTTGTATATGAATGA 57.392 39.130 0.00 0.00 0.00 2.57
3053 3558 6.513180 ACTACTCCGTGGTTGTATATGAATG 58.487 40.000 0.00 0.00 0.00 2.67
3054 3559 6.550108 AGACTACTCCGTGGTTGTATATGAAT 59.450 38.462 0.00 0.00 0.00 2.57
3065 3570 3.430042 TTCAGTAGACTACTCCGTGGT 57.570 47.619 12.37 0.00 36.76 4.16
3066 3571 3.066900 CCATTCAGTAGACTACTCCGTGG 59.933 52.174 12.37 14.90 36.76 4.94
3067 3572 3.066900 CCCATTCAGTAGACTACTCCGTG 59.933 52.174 12.37 10.47 36.76 4.94
3068 3573 3.288964 CCCATTCAGTAGACTACTCCGT 58.711 50.000 12.37 0.00 36.76 4.69
3069 3574 3.066900 CACCCATTCAGTAGACTACTCCG 59.933 52.174 12.37 3.07 36.76 4.63
3070 3575 3.385111 CCACCCATTCAGTAGACTACTCC 59.615 52.174 12.37 0.00 36.76 3.85
3100 3665 2.230508 AGATGGTGTTTTGCAGCTCATG 59.769 45.455 0.00 0.00 45.23 3.07
3101 3666 2.490903 GAGATGGTGTTTTGCAGCTCAT 59.509 45.455 0.00 0.00 45.23 2.90
3104 3669 0.877071 CGAGATGGTGTTTTGCAGCT 59.123 50.000 0.00 0.00 45.23 4.24
3105 3670 0.730494 GCGAGATGGTGTTTTGCAGC 60.730 55.000 0.00 0.00 45.22 5.25
3106 3671 0.109597 GGCGAGATGGTGTTTTGCAG 60.110 55.000 0.00 0.00 0.00 4.41
3107 3672 0.821301 TGGCGAGATGGTGTTTTGCA 60.821 50.000 0.00 0.00 0.00 4.08
3108 3673 0.387239 GTGGCGAGATGGTGTTTTGC 60.387 55.000 0.00 0.00 0.00 3.68
3111 3676 0.606401 CAGGTGGCGAGATGGTGTTT 60.606 55.000 0.00 0.00 0.00 2.83
3112 3677 1.003355 CAGGTGGCGAGATGGTGTT 60.003 57.895 0.00 0.00 0.00 3.32
3114 3679 2.124983 CCAGGTGGCGAGATGGTG 60.125 66.667 0.00 0.00 0.00 4.17
3115 3680 2.607750 ACCAGGTGGCGAGATGGT 60.608 61.111 0.00 0.00 41.22 3.55
3116 3681 2.124983 CACCAGGTGGCGAGATGG 60.125 66.667 12.40 0.00 39.32 3.51
3117 3682 1.021390 GTTCACCAGGTGGCGAGATG 61.021 60.000 20.14 0.00 39.32 2.90
3118 3683 1.194781 AGTTCACCAGGTGGCGAGAT 61.195 55.000 20.14 0.00 39.32 2.75
3119 3684 0.541063 TAGTTCACCAGGTGGCGAGA 60.541 55.000 20.14 0.00 39.32 4.04
3120 3685 0.108615 CTAGTTCACCAGGTGGCGAG 60.109 60.000 20.14 13.77 39.32 5.03
3121 3686 0.541063 TCTAGTTCACCAGGTGGCGA 60.541 55.000 20.14 8.46 39.32 5.54
3122 3687 0.320374 TTCTAGTTCACCAGGTGGCG 59.680 55.000 20.14 4.23 39.32 5.69
3123 3688 2.789409 ATTCTAGTTCACCAGGTGGC 57.211 50.000 20.14 12.71 39.32 5.01
3124 3689 4.286297 TGAATTCTAGTTCACCAGGTGG 57.714 45.455 20.14 2.99 42.17 4.61
3125 3690 6.878923 TGTAATGAATTCTAGTTCACCAGGTG 59.121 38.462 14.19 14.19 40.60 4.00
3126 3691 7.016153 TGTAATGAATTCTAGTTCACCAGGT 57.984 36.000 7.05 0.00 40.60 4.00
3127 3692 7.921786 TTGTAATGAATTCTAGTTCACCAGG 57.078 36.000 7.05 0.00 40.60 4.45
3129 3694 9.391006 GGTATTGTAATGAATTCTAGTTCACCA 57.609 33.333 7.05 0.00 40.60 4.17
3130 3695 9.391006 TGGTATTGTAATGAATTCTAGTTCACC 57.609 33.333 7.05 5.58 40.60 4.02
3144 3709 9.436957 GGACAGGAGTATTATGGTATTGTAATG 57.563 37.037 0.00 0.00 0.00 1.90
3145 3710 9.166222 TGGACAGGAGTATTATGGTATTGTAAT 57.834 33.333 0.00 0.00 0.00 1.89
3146 3711 8.555896 TGGACAGGAGTATTATGGTATTGTAA 57.444 34.615 0.00 0.00 0.00 2.41
3147 3712 8.426489 GTTGGACAGGAGTATTATGGTATTGTA 58.574 37.037 0.00 0.00 0.00 2.41
3148 3713 7.280356 GTTGGACAGGAGTATTATGGTATTGT 58.720 38.462 0.00 0.00 0.00 2.71
3149 3714 6.423905 CGTTGGACAGGAGTATTATGGTATTG 59.576 42.308 0.00 0.00 0.00 1.90
3150 3715 6.099269 ACGTTGGACAGGAGTATTATGGTATT 59.901 38.462 0.00 0.00 0.00 1.89
3151 3716 5.601313 ACGTTGGACAGGAGTATTATGGTAT 59.399 40.000 0.00 0.00 0.00 2.73
3152 3717 4.957954 ACGTTGGACAGGAGTATTATGGTA 59.042 41.667 0.00 0.00 0.00 3.25
3153 3718 3.773119 ACGTTGGACAGGAGTATTATGGT 59.227 43.478 0.00 0.00 0.00 3.55
3154 3719 4.402056 ACGTTGGACAGGAGTATTATGG 57.598 45.455 0.00 0.00 0.00 2.74
3155 3720 6.814644 TGTTAACGTTGGACAGGAGTATTATG 59.185 38.462 11.99 0.00 0.00 1.90
3156 3721 6.938507 TGTTAACGTTGGACAGGAGTATTAT 58.061 36.000 11.99 0.00 0.00 1.28
3157 3722 6.343716 TGTTAACGTTGGACAGGAGTATTA 57.656 37.500 11.99 0.00 0.00 0.98
3158 3723 5.217978 TGTTAACGTTGGACAGGAGTATT 57.782 39.130 11.99 0.00 0.00 1.89
3159 3724 4.877378 TGTTAACGTTGGACAGGAGTAT 57.123 40.909 11.99 0.00 0.00 2.12
3160 3725 4.877378 ATGTTAACGTTGGACAGGAGTA 57.123 40.909 19.46 1.67 0.00 2.59
3161 3726 3.764237 ATGTTAACGTTGGACAGGAGT 57.236 42.857 19.46 5.48 0.00 3.85
3162 3727 4.503007 CGATATGTTAACGTTGGACAGGAG 59.497 45.833 19.46 10.44 0.00 3.69
3163 3728 4.426416 CGATATGTTAACGTTGGACAGGA 58.574 43.478 19.46 12.82 0.00 3.86
3164 3729 3.000925 GCGATATGTTAACGTTGGACAGG 59.999 47.826 19.46 12.11 0.00 4.00
3165 3730 3.863424 AGCGATATGTTAACGTTGGACAG 59.137 43.478 19.46 10.48 0.00 3.51
3166 3731 3.852286 AGCGATATGTTAACGTTGGACA 58.148 40.909 11.99 15.60 0.00 4.02
3167 3732 3.244579 GGAGCGATATGTTAACGTTGGAC 59.755 47.826 11.99 10.20 0.00 4.02
3168 3733 3.119065 TGGAGCGATATGTTAACGTTGGA 60.119 43.478 11.99 0.00 0.00 3.53
3273 3838 2.507110 TACAGCTGAAGCAGGTCCGC 62.507 60.000 23.35 0.00 40.40 5.54
3320 3885 5.573337 AAGCACTTTCAGATATTTGCTCC 57.427 39.130 0.00 0.00 39.36 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.