Multiple sequence alignment - TraesCS6B01G178500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G178500 chr6B 100.000 2546 0 0 1 2546 198447371 198449916 0.000000e+00 4702.0
1 TraesCS6B01G178500 chr6D 93.022 1992 79 20 565 2546 109275294 109277235 0.000000e+00 2854.0
2 TraesCS6B01G178500 chr6D 90.909 44 2 2 1438 1480 344300096 344300054 9.840000e-05 58.4
3 TraesCS6B01G178500 chr6A 92.665 968 30 13 641 1586 134224945 134225893 0.000000e+00 1356.0
4 TraesCS6B01G178500 chr6A 92.558 430 12 8 1617 2035 134225893 134226313 1.300000e-167 599.0
5 TraesCS6B01G178500 chr6A 84.791 526 28 20 2028 2532 134227698 134228192 4.930000e-132 481.0
6 TraesCS6B01G178500 chr6A 90.909 44 2 2 1438 1480 484848224 484848182 9.840000e-05 58.4
7 TraesCS6B01G178500 chr5D 87.286 409 50 2 159 565 507909564 507909156 1.380000e-127 466.0
8 TraesCS6B01G178500 chr5D 87.407 405 50 1 162 565 500877963 500877559 4.960000e-127 464.0
9 TraesCS6B01G178500 chr7A 86.158 419 56 2 148 565 591628903 591628486 3.860000e-123 451.0
10 TraesCS6B01G178500 chr7A 87.435 382 47 1 179 559 167684067 167684448 3.010000e-119 438.0
11 TraesCS6B01G178500 chr7A 83.493 418 66 3 149 565 510616542 510616957 1.100000e-103 387.0
12 TraesCS6B01G178500 chr5A 85.112 403 58 2 159 559 549407624 549408026 6.560000e-111 411.0
13 TraesCS6B01G178500 chr4A 83.744 406 62 4 162 565 705498049 705497646 5.140000e-102 381.0
14 TraesCS6B01G178500 chr3A 83.422 374 61 1 193 565 593599723 593599350 1.880000e-91 346.0
15 TraesCS6B01G178500 chr7D 81.910 398 69 3 162 557 161270591 161270195 1.460000e-87 333.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G178500 chr6B 198447371 198449916 2545 False 4702 4702 100.000000 1 2546 1 chr6B.!!$F1 2545
1 TraesCS6B01G178500 chr6D 109275294 109277235 1941 False 2854 2854 93.022000 565 2546 1 chr6D.!!$F1 1981
2 TraesCS6B01G178500 chr6A 134224945 134228192 3247 False 812 1356 90.004667 641 2532 3 chr6A.!!$F1 1891

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
60 61 0.029567 CGACGGAGCACTACCTCATC 59.97 60.0 0.0 0.0 33.47 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1637 1672 0.319555 TTCTTCGAACAGCTGACGGG 60.32 55.0 23.35 18.82 0.0 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.732531 GTTTAACTACATCCCTAACCACAC 57.267 41.667 0.00 0.00 0.00 3.82
24 25 3.994931 AACTACATCCCTAACCACACC 57.005 47.619 0.00 0.00 0.00 4.16
25 26 3.200958 ACTACATCCCTAACCACACCT 57.799 47.619 0.00 0.00 0.00 4.00
26 27 3.105283 ACTACATCCCTAACCACACCTC 58.895 50.000 0.00 0.00 0.00 3.85
27 28 2.038863 ACATCCCTAACCACACCTCA 57.961 50.000 0.00 0.00 0.00 3.86
28 29 2.562296 ACATCCCTAACCACACCTCAT 58.438 47.619 0.00 0.00 0.00 2.90
29 30 2.505819 ACATCCCTAACCACACCTCATC 59.494 50.000 0.00 0.00 0.00 2.92
30 31 2.642171 TCCCTAACCACACCTCATCT 57.358 50.000 0.00 0.00 0.00 2.90
31 32 2.187958 TCCCTAACCACACCTCATCTG 58.812 52.381 0.00 0.00 0.00 2.90
32 33 1.407437 CCCTAACCACACCTCATCTGC 60.407 57.143 0.00 0.00 0.00 4.26
33 34 1.556911 CCTAACCACACCTCATCTGCT 59.443 52.381 0.00 0.00 0.00 4.24
34 35 2.026822 CCTAACCACACCTCATCTGCTT 60.027 50.000 0.00 0.00 0.00 3.91
35 36 2.191128 AACCACACCTCATCTGCTTC 57.809 50.000 0.00 0.00 0.00 3.86
36 37 0.326264 ACCACACCTCATCTGCTTCC 59.674 55.000 0.00 0.00 0.00 3.46
37 38 0.617413 CCACACCTCATCTGCTTCCT 59.383 55.000 0.00 0.00 0.00 3.36
38 39 1.406614 CCACACCTCATCTGCTTCCTC 60.407 57.143 0.00 0.00 0.00 3.71
39 40 1.554160 CACACCTCATCTGCTTCCTCT 59.446 52.381 0.00 0.00 0.00 3.69
40 41 2.762887 CACACCTCATCTGCTTCCTCTA 59.237 50.000 0.00 0.00 0.00 2.43
41 42 2.763448 ACACCTCATCTGCTTCCTCTAC 59.237 50.000 0.00 0.00 0.00 2.59
42 43 2.028130 ACCTCATCTGCTTCCTCTACG 58.972 52.381 0.00 0.00 0.00 3.51
43 44 2.302260 CCTCATCTGCTTCCTCTACGA 58.698 52.381 0.00 0.00 0.00 3.43
44 45 2.034053 CCTCATCTGCTTCCTCTACGAC 59.966 54.545 0.00 0.00 0.00 4.34
45 46 1.671328 TCATCTGCTTCCTCTACGACG 59.329 52.381 0.00 0.00 0.00 5.12
46 47 1.025812 ATCTGCTTCCTCTACGACGG 58.974 55.000 0.00 0.00 0.00 4.79
47 48 0.035725 TCTGCTTCCTCTACGACGGA 60.036 55.000 0.00 0.00 0.00 4.69
48 49 0.378962 CTGCTTCCTCTACGACGGAG 59.621 60.000 0.00 0.00 0.00 4.63
49 50 1.064458 GCTTCCTCTACGACGGAGC 59.936 63.158 0.90 0.00 0.00 4.70
50 51 1.654954 GCTTCCTCTACGACGGAGCA 61.655 60.000 0.90 0.00 0.00 4.26
51 52 0.099082 CTTCCTCTACGACGGAGCAC 59.901 60.000 0.90 0.00 0.00 4.40
52 53 0.322277 TTCCTCTACGACGGAGCACT 60.322 55.000 0.90 0.00 0.00 4.40
53 54 0.538584 TCCTCTACGACGGAGCACTA 59.461 55.000 0.90 0.00 0.00 2.74
54 55 0.656785 CCTCTACGACGGAGCACTAC 59.343 60.000 0.90 0.00 0.00 2.73
55 56 0.656785 CTCTACGACGGAGCACTACC 59.343 60.000 0.90 0.00 0.00 3.18
56 57 0.251354 TCTACGACGGAGCACTACCT 59.749 55.000 0.90 0.00 0.00 3.08
57 58 0.656785 CTACGACGGAGCACTACCTC 59.343 60.000 0.00 0.00 0.00 3.85
58 59 0.036105 TACGACGGAGCACTACCTCA 60.036 55.000 0.00 0.00 33.47 3.86
59 60 0.680280 ACGACGGAGCACTACCTCAT 60.680 55.000 0.00 0.00 33.47 2.90
60 61 0.029567 CGACGGAGCACTACCTCATC 59.970 60.000 0.00 0.00 33.47 2.92
61 62 1.394618 GACGGAGCACTACCTCATCT 58.605 55.000 0.00 0.00 33.47 2.90
62 63 1.751924 GACGGAGCACTACCTCATCTT 59.248 52.381 0.00 0.00 33.47 2.40
63 64 1.751924 ACGGAGCACTACCTCATCTTC 59.248 52.381 0.00 0.00 33.47 2.87
64 65 1.751351 CGGAGCACTACCTCATCTTCA 59.249 52.381 0.00 0.00 33.47 3.02
65 66 2.480416 CGGAGCACTACCTCATCTTCAC 60.480 54.545 0.00 0.00 33.47 3.18
66 67 2.159028 GGAGCACTACCTCATCTTCACC 60.159 54.545 0.00 0.00 33.47 4.02
67 68 2.497675 GAGCACTACCTCATCTTCACCA 59.502 50.000 0.00 0.00 0.00 4.17
68 69 2.234908 AGCACTACCTCATCTTCACCAC 59.765 50.000 0.00 0.00 0.00 4.16
69 70 2.678190 GCACTACCTCATCTTCACCACC 60.678 54.545 0.00 0.00 0.00 4.61
70 71 2.567169 CACTACCTCATCTTCACCACCA 59.433 50.000 0.00 0.00 0.00 4.17
71 72 3.198635 CACTACCTCATCTTCACCACCAT 59.801 47.826 0.00 0.00 0.00 3.55
72 73 4.405680 CACTACCTCATCTTCACCACCATA 59.594 45.833 0.00 0.00 0.00 2.74
73 74 5.030147 ACTACCTCATCTTCACCACCATAA 58.970 41.667 0.00 0.00 0.00 1.90
74 75 4.927267 ACCTCATCTTCACCACCATAAA 57.073 40.909 0.00 0.00 0.00 1.40
75 76 5.456921 ACCTCATCTTCACCACCATAAAT 57.543 39.130 0.00 0.00 0.00 1.40
76 77 5.195940 ACCTCATCTTCACCACCATAAATG 58.804 41.667 0.00 0.00 0.00 2.32
77 78 5.044919 ACCTCATCTTCACCACCATAAATGA 60.045 40.000 0.00 0.00 0.00 2.57
78 79 5.297776 CCTCATCTTCACCACCATAAATGAC 59.702 44.000 0.00 0.00 0.00 3.06
79 80 4.875536 TCATCTTCACCACCATAAATGACG 59.124 41.667 0.00 0.00 0.00 4.35
80 81 4.545208 TCTTCACCACCATAAATGACGA 57.455 40.909 0.00 0.00 0.00 4.20
81 82 4.250464 TCTTCACCACCATAAATGACGAC 58.750 43.478 0.00 0.00 0.00 4.34
82 83 3.686916 TCACCACCATAAATGACGACA 57.313 42.857 0.00 0.00 0.00 4.35
83 84 3.331150 TCACCACCATAAATGACGACAC 58.669 45.455 0.00 0.00 0.00 3.67
84 85 3.007506 TCACCACCATAAATGACGACACT 59.992 43.478 0.00 0.00 0.00 3.55
85 86 4.221041 TCACCACCATAAATGACGACACTA 59.779 41.667 0.00 0.00 0.00 2.74
86 87 4.328983 CACCACCATAAATGACGACACTAC 59.671 45.833 0.00 0.00 0.00 2.73
87 88 4.222145 ACCACCATAAATGACGACACTACT 59.778 41.667 0.00 0.00 0.00 2.57
88 89 4.566759 CCACCATAAATGACGACACTACTG 59.433 45.833 0.00 0.00 0.00 2.74
89 90 4.032900 CACCATAAATGACGACACTACTGC 59.967 45.833 0.00 0.00 0.00 4.40
90 91 3.242944 CCATAAATGACGACACTACTGCG 59.757 47.826 0.00 0.00 0.00 5.18
91 92 1.068474 AAATGACGACACTACTGCGC 58.932 50.000 0.00 0.00 0.00 6.09
92 93 0.736325 AATGACGACACTACTGCGCC 60.736 55.000 4.18 0.00 0.00 6.53
93 94 2.867333 ATGACGACACTACTGCGCCG 62.867 60.000 4.18 0.00 0.00 6.46
94 95 3.318539 GACGACACTACTGCGCCGA 62.319 63.158 4.18 0.00 0.00 5.54
95 96 2.126618 CGACACTACTGCGCCGAA 60.127 61.111 4.18 0.00 0.00 4.30
96 97 2.152699 CGACACTACTGCGCCGAAG 61.153 63.158 4.18 1.05 0.00 3.79
97 98 1.211969 GACACTACTGCGCCGAAGA 59.788 57.895 4.18 0.00 0.00 2.87
98 99 0.179134 GACACTACTGCGCCGAAGAT 60.179 55.000 4.18 0.00 0.00 2.40
99 100 0.246635 ACACTACTGCGCCGAAGATT 59.753 50.000 4.18 0.00 0.00 2.40
100 101 1.337823 ACACTACTGCGCCGAAGATTT 60.338 47.619 4.18 0.00 0.00 2.17
101 102 1.324736 CACTACTGCGCCGAAGATTTC 59.675 52.381 4.18 0.00 0.00 2.17
114 115 4.079665 GAAGATTTCGGCAAACTGGTAC 57.920 45.455 0.00 0.00 0.00 3.34
115 116 3.418684 AGATTTCGGCAAACTGGTACT 57.581 42.857 0.00 0.00 0.00 2.73
116 117 3.751518 AGATTTCGGCAAACTGGTACTT 58.248 40.909 0.00 0.00 0.00 2.24
117 118 4.901868 AGATTTCGGCAAACTGGTACTTA 58.098 39.130 0.00 0.00 0.00 2.24
118 119 4.694037 AGATTTCGGCAAACTGGTACTTAC 59.306 41.667 0.00 0.00 0.00 2.34
119 120 3.756933 TTCGGCAAACTGGTACTTACT 57.243 42.857 0.00 0.00 0.00 2.24
120 121 3.308438 TCGGCAAACTGGTACTTACTC 57.692 47.619 0.00 0.00 0.00 2.59
121 122 2.028748 TCGGCAAACTGGTACTTACTCC 60.029 50.000 0.00 0.00 0.00 3.85
122 123 2.028385 CGGCAAACTGGTACTTACTCCT 60.028 50.000 0.00 0.00 0.00 3.69
123 124 3.556423 CGGCAAACTGGTACTTACTCCTT 60.556 47.826 0.00 0.00 0.00 3.36
124 125 4.001652 GGCAAACTGGTACTTACTCCTTC 58.998 47.826 0.00 0.00 0.00 3.46
125 126 4.262938 GGCAAACTGGTACTTACTCCTTCT 60.263 45.833 0.00 0.00 0.00 2.85
126 127 4.691216 GCAAACTGGTACTTACTCCTTCTG 59.309 45.833 0.00 0.00 0.00 3.02
127 128 5.742255 GCAAACTGGTACTTACTCCTTCTGT 60.742 44.000 0.00 0.00 0.00 3.41
128 129 6.289064 CAAACTGGTACTTACTCCTTCTGTT 58.711 40.000 0.00 0.00 0.00 3.16
129 130 5.725325 ACTGGTACTTACTCCTTCTGTTC 57.275 43.478 0.00 0.00 0.00 3.18
130 131 5.395611 ACTGGTACTTACTCCTTCTGTTCT 58.604 41.667 0.00 0.00 0.00 3.01
131 132 6.550163 ACTGGTACTTACTCCTTCTGTTCTA 58.450 40.000 0.00 0.00 0.00 2.10
132 133 7.008941 ACTGGTACTTACTCCTTCTGTTCTAA 58.991 38.462 0.00 0.00 0.00 2.10
133 134 7.508296 ACTGGTACTTACTCCTTCTGTTCTAAA 59.492 37.037 0.00 0.00 0.00 1.85
134 135 7.664758 TGGTACTTACTCCTTCTGTTCTAAAC 58.335 38.462 0.00 0.00 0.00 2.01
135 136 7.095910 GGTACTTACTCCTTCTGTTCTAAACC 58.904 42.308 0.00 0.00 0.00 3.27
136 137 6.997942 ACTTACTCCTTCTGTTCTAAACCT 57.002 37.500 0.00 0.00 0.00 3.50
137 138 9.018582 GTACTTACTCCTTCTGTTCTAAACCTA 57.981 37.037 0.00 0.00 0.00 3.08
138 139 8.667592 ACTTACTCCTTCTGTTCTAAACCTAT 57.332 34.615 0.00 0.00 0.00 2.57
139 140 8.751242 ACTTACTCCTTCTGTTCTAAACCTATC 58.249 37.037 0.00 0.00 0.00 2.08
140 141 8.896722 TTACTCCTTCTGTTCTAAACCTATCT 57.103 34.615 0.00 0.00 0.00 1.98
141 142 7.412853 ACTCCTTCTGTTCTAAACCTATCTC 57.587 40.000 0.00 0.00 0.00 2.75
142 143 7.186268 ACTCCTTCTGTTCTAAACCTATCTCT 58.814 38.462 0.00 0.00 0.00 3.10
143 144 7.340999 ACTCCTTCTGTTCTAAACCTATCTCTC 59.659 40.741 0.00 0.00 0.00 3.20
144 145 7.415086 TCCTTCTGTTCTAAACCTATCTCTCT 58.585 38.462 0.00 0.00 0.00 3.10
145 146 7.558444 TCCTTCTGTTCTAAACCTATCTCTCTC 59.442 40.741 0.00 0.00 0.00 3.20
146 147 7.559897 CCTTCTGTTCTAAACCTATCTCTCTCT 59.440 40.741 0.00 0.00 0.00 3.10
147 148 8.887264 TTCTGTTCTAAACCTATCTCTCTCTT 57.113 34.615 0.00 0.00 0.00 2.85
148 149 8.887264 TCTGTTCTAAACCTATCTCTCTCTTT 57.113 34.615 0.00 0.00 0.00 2.52
149 150 9.315363 TCTGTTCTAAACCTATCTCTCTCTTTT 57.685 33.333 0.00 0.00 0.00 2.27
150 151 9.364989 CTGTTCTAAACCTATCTCTCTCTTTTG 57.635 37.037 0.00 0.00 0.00 2.44
151 152 8.871125 TGTTCTAAACCTATCTCTCTCTTTTGT 58.129 33.333 0.00 0.00 0.00 2.83
152 153 9.713713 GTTCTAAACCTATCTCTCTCTTTTGTT 57.286 33.333 0.00 0.00 0.00 2.83
196 197 8.062065 TCAACCACACCTTTATTTAATCATCC 57.938 34.615 0.00 0.00 0.00 3.51
197 198 7.123547 TCAACCACACCTTTATTTAATCATCCC 59.876 37.037 0.00 0.00 0.00 3.85
198 199 6.498538 ACCACACCTTTATTTAATCATCCCA 58.501 36.000 0.00 0.00 0.00 4.37
199 200 6.379988 ACCACACCTTTATTTAATCATCCCAC 59.620 38.462 0.00 0.00 0.00 4.61
200 201 6.379703 CCACACCTTTATTTAATCATCCCACA 59.620 38.462 0.00 0.00 0.00 4.17
201 202 7.257722 CACACCTTTATTTAATCATCCCACAC 58.742 38.462 0.00 0.00 0.00 3.82
202 203 6.379988 ACACCTTTATTTAATCATCCCACACC 59.620 38.462 0.00 0.00 0.00 4.16
203 204 5.592688 ACCTTTATTTAATCATCCCACACCG 59.407 40.000 0.00 0.00 0.00 4.94
204 205 5.009610 CCTTTATTTAATCATCCCACACCGG 59.990 44.000 0.00 0.00 0.00 5.28
213 214 2.494918 CCACACCGGGATCTCGTC 59.505 66.667 15.09 0.00 0.00 4.20
214 215 2.052690 CCACACCGGGATCTCGTCT 61.053 63.158 15.09 0.00 0.00 4.18
215 216 1.139734 CACACCGGGATCTCGTCTG 59.860 63.158 15.09 11.09 0.00 3.51
216 217 1.001269 ACACCGGGATCTCGTCTGA 60.001 57.895 15.09 0.00 0.00 3.27
217 218 1.032657 ACACCGGGATCTCGTCTGAG 61.033 60.000 15.09 0.00 43.99 3.35
233 234 8.957466 TCTCGTCTGAGATAGTCTTTAAAATGA 58.043 33.333 0.00 0.00 46.25 2.57
234 235 9.574458 CTCGTCTGAGATAGTCTTTAAAATGAA 57.426 33.333 0.00 0.00 45.57 2.57
235 236 9.923143 TCGTCTGAGATAGTCTTTAAAATGAAA 57.077 29.630 0.00 0.00 0.00 2.69
242 243 9.413734 AGATAGTCTTTAAAATGAAATCTGGGG 57.586 33.333 0.00 0.00 0.00 4.96
243 244 6.857437 AGTCTTTAAAATGAAATCTGGGGG 57.143 37.500 0.00 0.00 0.00 5.40
244 245 5.187772 AGTCTTTAAAATGAAATCTGGGGGC 59.812 40.000 0.00 0.00 0.00 5.80
245 246 5.046663 GTCTTTAAAATGAAATCTGGGGGCA 60.047 40.000 0.00 0.00 0.00 5.36
246 247 4.817318 TTAAAATGAAATCTGGGGGCAC 57.183 40.909 0.00 0.00 0.00 5.01
247 248 2.323999 AAATGAAATCTGGGGGCACA 57.676 45.000 0.00 0.00 0.00 4.57
248 249 2.555732 AATGAAATCTGGGGGCACAT 57.444 45.000 0.00 0.00 0.00 3.21
249 250 1.784358 ATGAAATCTGGGGGCACATG 58.216 50.000 0.00 0.00 0.00 3.21
250 251 0.971959 TGAAATCTGGGGGCACATGC 60.972 55.000 0.00 0.00 41.14 4.06
251 252 0.971959 GAAATCTGGGGGCACATGCA 60.972 55.000 6.15 0.00 44.36 3.96
252 253 0.974010 AAATCTGGGGGCACATGCAG 60.974 55.000 6.15 0.00 44.36 4.41
253 254 4.746309 TCTGGGGGCACATGCAGC 62.746 66.667 6.15 2.28 44.36 5.25
260 261 3.053828 GCACATGCAGCCAACCTT 58.946 55.556 0.00 0.00 41.59 3.50
261 262 1.373748 GCACATGCAGCCAACCTTG 60.374 57.895 0.00 0.00 41.59 3.61
262 263 2.043625 CACATGCAGCCAACCTTGT 58.956 52.632 0.00 0.00 0.00 3.16
263 264 1.246649 CACATGCAGCCAACCTTGTA 58.753 50.000 0.00 0.00 0.00 2.41
264 265 1.820519 CACATGCAGCCAACCTTGTAT 59.179 47.619 0.00 0.00 0.00 2.29
265 266 3.016031 CACATGCAGCCAACCTTGTATA 58.984 45.455 0.00 0.00 0.00 1.47
266 267 3.443329 CACATGCAGCCAACCTTGTATAA 59.557 43.478 0.00 0.00 0.00 0.98
267 268 4.098349 CACATGCAGCCAACCTTGTATAAT 59.902 41.667 0.00 0.00 0.00 1.28
268 269 4.711355 ACATGCAGCCAACCTTGTATAATT 59.289 37.500 0.00 0.00 0.00 1.40
269 270 5.187576 ACATGCAGCCAACCTTGTATAATTT 59.812 36.000 0.00 0.00 0.00 1.82
270 271 6.379703 ACATGCAGCCAACCTTGTATAATTTA 59.620 34.615 0.00 0.00 0.00 1.40
271 272 6.449635 TGCAGCCAACCTTGTATAATTTAG 57.550 37.500 0.00 0.00 0.00 1.85
272 273 6.184068 TGCAGCCAACCTTGTATAATTTAGA 58.816 36.000 0.00 0.00 0.00 2.10
273 274 6.833416 TGCAGCCAACCTTGTATAATTTAGAT 59.167 34.615 0.00 0.00 0.00 1.98
274 275 7.141363 GCAGCCAACCTTGTATAATTTAGATG 58.859 38.462 0.00 0.00 0.00 2.90
275 276 7.141363 CAGCCAACCTTGTATAATTTAGATGC 58.859 38.462 0.00 0.00 0.00 3.91
276 277 6.833416 AGCCAACCTTGTATAATTTAGATGCA 59.167 34.615 0.00 0.00 0.00 3.96
277 278 7.341769 AGCCAACCTTGTATAATTTAGATGCAA 59.658 33.333 0.00 0.00 0.00 4.08
278 279 7.435192 GCCAACCTTGTATAATTTAGATGCAAC 59.565 37.037 0.00 0.00 0.00 4.17
279 280 8.686334 CCAACCTTGTATAATTTAGATGCAACT 58.314 33.333 0.86 0.86 0.00 3.16
280 281 9.507280 CAACCTTGTATAATTTAGATGCAACTG 57.493 33.333 6.76 0.00 0.00 3.16
281 282 7.707104 ACCTTGTATAATTTAGATGCAACTGC 58.293 34.615 6.76 0.00 42.50 4.40
282 283 7.557719 ACCTTGTATAATTTAGATGCAACTGCT 59.442 33.333 6.76 0.00 42.66 4.24
283 284 8.408601 CCTTGTATAATTTAGATGCAACTGCTT 58.591 33.333 6.76 0.00 42.66 3.91
284 285 9.443283 CTTGTATAATTTAGATGCAACTGCTTC 57.557 33.333 6.76 9.03 43.17 3.86
285 286 7.930217 TGTATAATTTAGATGCAACTGCTTCC 58.070 34.615 6.76 0.00 43.68 3.46
286 287 4.725790 AATTTAGATGCAACTGCTTCCC 57.274 40.909 6.76 0.00 43.68 3.97
287 288 3.439857 TTTAGATGCAACTGCTTCCCT 57.560 42.857 6.76 3.43 43.68 4.20
288 289 4.568072 TTTAGATGCAACTGCTTCCCTA 57.432 40.909 6.76 2.65 43.68 3.53
289 290 2.706339 AGATGCAACTGCTTCCCTAG 57.294 50.000 12.51 0.00 43.68 3.02
301 302 4.009370 GCTTCCCTAGCTAATAAGTGGG 57.991 50.000 7.09 7.09 46.77 4.61
302 303 3.807561 GCTTCCCTAGCTAATAAGTGGGC 60.808 52.174 8.34 0.00 46.77 5.36
303 304 3.054779 TCCCTAGCTAATAAGTGGGCA 57.945 47.619 8.34 0.00 33.07 5.36
304 305 3.389866 TCCCTAGCTAATAAGTGGGCAA 58.610 45.455 8.34 0.00 33.07 4.52
305 306 3.135895 TCCCTAGCTAATAAGTGGGCAAC 59.864 47.826 8.34 0.00 33.07 4.17
306 307 3.136626 CCCTAGCTAATAAGTGGGCAACT 59.863 47.826 0.82 0.00 42.60 3.16
318 319 4.599041 AGTGGGCAACTTTATTAGCATCA 58.401 39.130 0.00 0.00 34.57 3.07
319 320 4.399303 AGTGGGCAACTTTATTAGCATCAC 59.601 41.667 0.00 0.00 34.57 3.06
320 321 3.376859 TGGGCAACTTTATTAGCATCACG 59.623 43.478 0.00 0.00 0.00 4.35
321 322 3.363178 GGCAACTTTATTAGCATCACGC 58.637 45.455 0.00 0.00 42.91 5.34
322 323 3.363178 GCAACTTTATTAGCATCACGCC 58.637 45.455 0.00 0.00 44.04 5.68
323 324 3.065371 GCAACTTTATTAGCATCACGCCT 59.935 43.478 0.00 0.00 44.04 5.52
324 325 4.272504 GCAACTTTATTAGCATCACGCCTA 59.727 41.667 0.00 0.00 44.04 3.93
325 326 5.220777 GCAACTTTATTAGCATCACGCCTAA 60.221 40.000 0.00 0.00 44.04 2.69
326 327 5.986004 ACTTTATTAGCATCACGCCTAAC 57.014 39.130 0.00 0.00 44.04 2.34
327 328 4.814771 ACTTTATTAGCATCACGCCTAACC 59.185 41.667 0.00 0.00 44.04 2.85
328 329 2.256117 ATTAGCATCACGCCTAACCC 57.744 50.000 0.00 0.00 44.04 4.11
329 330 0.906066 TTAGCATCACGCCTAACCCA 59.094 50.000 0.00 0.00 44.04 4.51
330 331 0.177141 TAGCATCACGCCTAACCCAC 59.823 55.000 0.00 0.00 44.04 4.61
331 332 2.461110 GCATCACGCCTAACCCACG 61.461 63.158 0.00 0.00 32.94 4.94
332 333 1.216977 CATCACGCCTAACCCACGA 59.783 57.895 0.00 0.00 0.00 4.35
333 334 0.390603 CATCACGCCTAACCCACGAA 60.391 55.000 0.00 0.00 0.00 3.85
334 335 0.322322 ATCACGCCTAACCCACGAAA 59.678 50.000 0.00 0.00 0.00 3.46
335 336 0.600782 TCACGCCTAACCCACGAAAC 60.601 55.000 0.00 0.00 0.00 2.78
336 337 0.601841 CACGCCTAACCCACGAAACT 60.602 55.000 0.00 0.00 0.00 2.66
337 338 0.107268 ACGCCTAACCCACGAAACTT 59.893 50.000 0.00 0.00 0.00 2.66
338 339 1.232119 CGCCTAACCCACGAAACTTT 58.768 50.000 0.00 0.00 0.00 2.66
339 340 1.196127 CGCCTAACCCACGAAACTTTC 59.804 52.381 0.00 0.00 0.00 2.62
340 341 1.538512 GCCTAACCCACGAAACTTTCC 59.461 52.381 0.00 0.00 0.00 3.13
341 342 2.853705 CCTAACCCACGAAACTTTCCA 58.146 47.619 0.00 0.00 0.00 3.53
342 343 3.215975 CCTAACCCACGAAACTTTCCAA 58.784 45.455 0.00 0.00 0.00 3.53
343 344 3.004002 CCTAACCCACGAAACTTTCCAAC 59.996 47.826 0.00 0.00 0.00 3.77
344 345 2.430248 ACCCACGAAACTTTCCAACT 57.570 45.000 0.00 0.00 0.00 3.16
345 346 2.294979 ACCCACGAAACTTTCCAACTC 58.705 47.619 0.00 0.00 0.00 3.01
346 347 1.607148 CCCACGAAACTTTCCAACTCC 59.393 52.381 0.00 0.00 0.00 3.85
347 348 1.607148 CCACGAAACTTTCCAACTCCC 59.393 52.381 0.00 0.00 0.00 4.30
348 349 1.607148 CACGAAACTTTCCAACTCCCC 59.393 52.381 0.00 0.00 0.00 4.81
349 350 1.244816 CGAAACTTTCCAACTCCCCC 58.755 55.000 0.00 0.00 0.00 5.40
350 351 1.202891 CGAAACTTTCCAACTCCCCCT 60.203 52.381 0.00 0.00 0.00 4.79
351 352 2.515854 GAAACTTTCCAACTCCCCCTC 58.484 52.381 0.00 0.00 0.00 4.30
352 353 1.529744 AACTTTCCAACTCCCCCTCA 58.470 50.000 0.00 0.00 0.00 3.86
353 354 1.529744 ACTTTCCAACTCCCCCTCAA 58.470 50.000 0.00 0.00 0.00 3.02
354 355 1.425448 ACTTTCCAACTCCCCCTCAAG 59.575 52.381 0.00 0.00 0.00 3.02
355 356 0.777446 TTTCCAACTCCCCCTCAAGG 59.223 55.000 0.00 0.00 0.00 3.61
356 357 1.789576 TTCCAACTCCCCCTCAAGGC 61.790 60.000 0.00 0.00 0.00 4.35
357 358 2.356667 CAACTCCCCCTCAAGGCC 59.643 66.667 0.00 0.00 0.00 5.19
358 359 2.121506 AACTCCCCCTCAAGGCCA 60.122 61.111 5.01 0.00 0.00 5.36
359 360 1.778383 AACTCCCCCTCAAGGCCAA 60.778 57.895 5.01 0.00 0.00 4.52
360 361 1.149133 AACTCCCCCTCAAGGCCAAT 61.149 55.000 5.01 0.00 0.00 3.16
361 362 0.253630 ACTCCCCCTCAAGGCCAATA 60.254 55.000 5.01 0.00 0.00 1.90
362 363 0.475906 CTCCCCCTCAAGGCCAATAG 59.524 60.000 5.01 0.00 0.00 1.73
363 364 0.045623 TCCCCCTCAAGGCCAATAGA 59.954 55.000 5.01 0.00 0.00 1.98
364 365 0.183731 CCCCCTCAAGGCCAATAGAC 59.816 60.000 5.01 0.00 0.00 2.59
365 366 0.179045 CCCCTCAAGGCCAATAGACG 60.179 60.000 5.01 0.00 0.00 4.18
366 367 0.815615 CCCTCAAGGCCAATAGACGC 60.816 60.000 5.01 0.00 0.00 5.19
367 368 0.179000 CCTCAAGGCCAATAGACGCT 59.821 55.000 5.01 0.00 0.00 5.07
368 369 1.407437 CCTCAAGGCCAATAGACGCTT 60.407 52.381 5.01 0.00 0.00 4.68
369 370 1.667724 CTCAAGGCCAATAGACGCTTG 59.332 52.381 5.01 0.00 0.00 4.01
370 371 1.277842 TCAAGGCCAATAGACGCTTGA 59.722 47.619 5.01 0.00 0.00 3.02
371 372 1.398390 CAAGGCCAATAGACGCTTGAC 59.602 52.381 5.01 0.00 0.00 3.18
372 373 0.107654 AGGCCAATAGACGCTTGACC 60.108 55.000 5.01 0.00 0.00 4.02
373 374 0.107654 GGCCAATAGACGCTTGACCT 60.108 55.000 0.00 0.00 0.00 3.85
374 375 1.291132 GCCAATAGACGCTTGACCTC 58.709 55.000 0.00 0.00 0.00 3.85
375 376 1.941325 CCAATAGACGCTTGACCTCC 58.059 55.000 0.00 0.00 0.00 4.30
376 377 1.482593 CCAATAGACGCTTGACCTCCT 59.517 52.381 0.00 0.00 0.00 3.69
377 378 2.482142 CCAATAGACGCTTGACCTCCTC 60.482 54.545 0.00 0.00 0.00 3.71
378 379 1.404843 ATAGACGCTTGACCTCCTCC 58.595 55.000 0.00 0.00 0.00 4.30
379 380 0.039180 TAGACGCTTGACCTCCTCCA 59.961 55.000 0.00 0.00 0.00 3.86
380 381 1.079750 GACGCTTGACCTCCTCCAC 60.080 63.158 0.00 0.00 0.00 4.02
381 382 1.816863 GACGCTTGACCTCCTCCACA 61.817 60.000 0.00 0.00 0.00 4.17
382 383 1.371183 CGCTTGACCTCCTCCACAA 59.629 57.895 0.00 0.00 0.00 3.33
383 384 0.036010 CGCTTGACCTCCTCCACAAT 60.036 55.000 0.00 0.00 0.00 2.71
384 385 1.207089 CGCTTGACCTCCTCCACAATA 59.793 52.381 0.00 0.00 0.00 1.90
385 386 2.739932 CGCTTGACCTCCTCCACAATAG 60.740 54.545 0.00 0.00 0.00 1.73
386 387 2.420687 GCTTGACCTCCTCCACAATAGG 60.421 54.545 0.00 0.00 35.26 2.57
387 388 1.204146 TGACCTCCTCCACAATAGGC 58.796 55.000 0.00 0.00 33.84 3.93
388 389 0.470341 GACCTCCTCCACAATAGGCC 59.530 60.000 0.00 0.00 33.84 5.19
389 390 0.988678 ACCTCCTCCACAATAGGCCC 60.989 60.000 0.00 0.00 33.84 5.80
390 391 1.709994 CCTCCTCCACAATAGGCCCC 61.710 65.000 0.00 0.00 33.84 5.80
391 392 0.988145 CTCCTCCACAATAGGCCCCA 60.988 60.000 0.00 0.00 33.84 4.96
392 393 0.988145 TCCTCCACAATAGGCCCCAG 60.988 60.000 0.00 0.00 33.84 4.45
393 394 1.152881 CTCCACAATAGGCCCCAGC 60.153 63.158 0.00 0.00 38.76 4.85
394 395 2.516930 CCACAATAGGCCCCAGCG 60.517 66.667 0.00 0.00 41.24 5.18
395 396 2.589540 CACAATAGGCCCCAGCGA 59.410 61.111 0.00 0.00 41.24 4.93
396 397 1.149174 CACAATAGGCCCCAGCGAT 59.851 57.895 0.00 0.00 41.24 4.58
397 398 1.149174 ACAATAGGCCCCAGCGATG 59.851 57.895 0.00 0.00 41.24 3.84
398 399 1.344953 ACAATAGGCCCCAGCGATGA 61.345 55.000 0.06 0.00 41.24 2.92
399 400 0.886490 CAATAGGCCCCAGCGATGAC 60.886 60.000 0.06 0.00 41.24 3.06
400 401 1.344953 AATAGGCCCCAGCGATGACA 61.345 55.000 0.06 0.00 41.24 3.58
401 402 1.344953 ATAGGCCCCAGCGATGACAA 61.345 55.000 0.06 0.00 41.24 3.18
402 403 1.971505 TAGGCCCCAGCGATGACAAG 61.972 60.000 0.06 0.00 41.24 3.16
403 404 2.045926 GCCCCAGCGATGACAAGT 60.046 61.111 0.06 0.00 0.00 3.16
404 405 2.109126 GCCCCAGCGATGACAAGTC 61.109 63.158 0.06 0.00 0.00 3.01
405 406 1.450312 CCCCAGCGATGACAAGTCC 60.450 63.158 0.06 0.00 0.00 3.85
406 407 1.599047 CCCAGCGATGACAAGTCCT 59.401 57.895 0.06 0.00 0.00 3.85
407 408 0.036010 CCCAGCGATGACAAGTCCTT 60.036 55.000 0.06 0.00 0.00 3.36
408 409 1.611673 CCCAGCGATGACAAGTCCTTT 60.612 52.381 0.06 0.00 0.00 3.11
409 410 2.154462 CCAGCGATGACAAGTCCTTTT 58.846 47.619 0.06 0.00 0.00 2.27
410 411 2.095567 CCAGCGATGACAAGTCCTTTTG 60.096 50.000 0.06 0.00 0.00 2.44
411 412 1.537202 AGCGATGACAAGTCCTTTTGC 59.463 47.619 0.00 0.00 0.00 3.68
412 413 1.725931 GCGATGACAAGTCCTTTTGCG 60.726 52.381 0.00 0.00 0.00 4.85
413 414 1.531149 CGATGACAAGTCCTTTTGCGT 59.469 47.619 0.00 0.00 0.00 5.24
414 415 2.662791 CGATGACAAGTCCTTTTGCGTG 60.663 50.000 0.00 0.00 0.00 5.34
415 416 0.380378 TGACAAGTCCTTTTGCGTGC 59.620 50.000 0.00 0.00 0.00 5.34
416 417 0.380378 GACAAGTCCTTTTGCGTGCA 59.620 50.000 0.00 0.00 0.00 4.57
417 418 1.001378 GACAAGTCCTTTTGCGTGCAT 60.001 47.619 0.00 0.00 0.00 3.96
418 419 1.408702 ACAAGTCCTTTTGCGTGCATT 59.591 42.857 0.00 0.00 0.00 3.56
419 420 1.788308 CAAGTCCTTTTGCGTGCATTG 59.212 47.619 0.00 0.00 0.00 2.82
420 421 1.317613 AGTCCTTTTGCGTGCATTGA 58.682 45.000 0.00 0.00 0.00 2.57
421 422 1.680735 AGTCCTTTTGCGTGCATTGAA 59.319 42.857 0.00 0.00 0.00 2.69
422 423 2.053627 GTCCTTTTGCGTGCATTGAAG 58.946 47.619 0.00 1.22 0.00 3.02
423 424 1.680735 TCCTTTTGCGTGCATTGAAGT 59.319 42.857 0.00 0.00 0.00 3.01
424 425 2.100584 TCCTTTTGCGTGCATTGAAGTT 59.899 40.909 0.00 0.00 0.00 2.66
425 426 2.865551 CCTTTTGCGTGCATTGAAGTTT 59.134 40.909 0.00 0.00 0.00 2.66
426 427 3.302610 CCTTTTGCGTGCATTGAAGTTTG 60.303 43.478 0.00 0.00 0.00 2.93
427 428 1.207390 TTGCGTGCATTGAAGTTTGC 58.793 45.000 0.00 0.00 39.33 3.68
428 429 0.385029 TGCGTGCATTGAAGTTTGCT 59.615 45.000 0.00 0.00 39.60 3.91
429 430 1.202394 TGCGTGCATTGAAGTTTGCTT 60.202 42.857 0.00 0.00 39.60 3.91
430 431 2.033927 TGCGTGCATTGAAGTTTGCTTA 59.966 40.909 0.00 0.00 39.60 3.09
431 432 2.405025 GCGTGCATTGAAGTTTGCTTAC 59.595 45.455 0.00 0.00 39.60 2.34
432 433 3.626977 CGTGCATTGAAGTTTGCTTACA 58.373 40.909 0.00 0.00 39.60 2.41
433 434 4.041049 CGTGCATTGAAGTTTGCTTACAA 58.959 39.130 0.00 0.00 39.60 2.41
434 435 4.681025 CGTGCATTGAAGTTTGCTTACAAT 59.319 37.500 0.00 0.00 39.60 2.71
435 436 5.164158 CGTGCATTGAAGTTTGCTTACAATC 60.164 40.000 0.00 0.00 39.60 2.67
436 437 5.922544 GTGCATTGAAGTTTGCTTACAATCT 59.077 36.000 0.00 0.00 39.60 2.40
437 438 6.088616 GTGCATTGAAGTTTGCTTACAATCTC 59.911 38.462 0.00 0.00 39.60 2.75
438 439 5.574443 GCATTGAAGTTTGCTTACAATCTCC 59.426 40.000 0.00 0.00 35.28 3.71
439 440 6.571150 GCATTGAAGTTTGCTTACAATCTCCT 60.571 38.462 0.00 0.00 35.28 3.69
440 441 6.959639 TTGAAGTTTGCTTACAATCTCCTT 57.040 33.333 0.00 0.00 35.28 3.36
441 442 6.317789 TGAAGTTTGCTTACAATCTCCTTG 57.682 37.500 0.00 0.00 35.28 3.61
442 443 4.773323 AGTTTGCTTACAATCTCCTTGC 57.227 40.909 0.00 0.00 38.50 4.01
443 444 4.144297 AGTTTGCTTACAATCTCCTTGCA 58.856 39.130 0.00 0.00 38.50 4.08
444 445 4.584325 AGTTTGCTTACAATCTCCTTGCAA 59.416 37.500 0.00 0.00 38.50 4.08
445 446 5.244626 AGTTTGCTTACAATCTCCTTGCAAT 59.755 36.000 0.00 0.00 38.46 3.56
446 447 4.970662 TGCTTACAATCTCCTTGCAATC 57.029 40.909 0.00 0.00 38.50 2.67
447 448 3.696051 TGCTTACAATCTCCTTGCAATCC 59.304 43.478 0.00 0.00 38.50 3.01
448 449 3.696051 GCTTACAATCTCCTTGCAATCCA 59.304 43.478 0.00 0.00 38.50 3.41
449 450 4.340381 GCTTACAATCTCCTTGCAATCCAT 59.660 41.667 0.00 0.00 38.50 3.41
450 451 5.506982 GCTTACAATCTCCTTGCAATCCATC 60.507 44.000 0.00 0.00 38.50 3.51
451 452 4.246712 ACAATCTCCTTGCAATCCATCT 57.753 40.909 0.00 0.00 38.50 2.90
452 453 4.205587 ACAATCTCCTTGCAATCCATCTC 58.794 43.478 0.00 0.00 38.50 2.75
453 454 2.609427 TCTCCTTGCAATCCATCTCG 57.391 50.000 0.00 0.00 0.00 4.04
454 455 2.110578 TCTCCTTGCAATCCATCTCGA 58.889 47.619 0.00 0.00 0.00 4.04
455 456 2.702478 TCTCCTTGCAATCCATCTCGAT 59.298 45.455 0.00 0.00 0.00 3.59
456 457 3.897505 TCTCCTTGCAATCCATCTCGATA 59.102 43.478 0.00 0.00 0.00 2.92
457 458 4.529769 TCTCCTTGCAATCCATCTCGATAT 59.470 41.667 0.00 0.00 0.00 1.63
458 459 4.572909 TCCTTGCAATCCATCTCGATATG 58.427 43.478 0.00 3.88 0.00 1.78
459 460 4.040829 TCCTTGCAATCCATCTCGATATGT 59.959 41.667 0.00 0.00 0.00 2.29
460 461 5.245977 TCCTTGCAATCCATCTCGATATGTA 59.754 40.000 0.00 0.00 0.00 2.29
461 462 5.579904 CCTTGCAATCCATCTCGATATGTAG 59.420 44.000 0.00 0.00 0.00 2.74
462 463 5.077134 TGCAATCCATCTCGATATGTAGG 57.923 43.478 9.63 0.00 0.00 3.18
463 464 4.528206 TGCAATCCATCTCGATATGTAGGT 59.472 41.667 9.63 0.00 0.00 3.08
464 465 5.012046 TGCAATCCATCTCGATATGTAGGTT 59.988 40.000 9.63 0.00 0.00 3.50
465 466 5.349817 GCAATCCATCTCGATATGTAGGTTG 59.650 44.000 9.63 8.69 0.00 3.77
466 467 6.691508 CAATCCATCTCGATATGTAGGTTGA 58.308 40.000 9.63 0.00 0.00 3.18
467 468 7.326454 CAATCCATCTCGATATGTAGGTTGAT 58.674 38.462 9.63 2.14 0.00 2.57
468 469 6.272822 TCCATCTCGATATGTAGGTTGATG 57.727 41.667 9.63 3.99 0.00 3.07
469 470 6.010219 TCCATCTCGATATGTAGGTTGATGA 58.990 40.000 9.63 0.00 33.92 2.92
470 471 6.665248 TCCATCTCGATATGTAGGTTGATGAT 59.335 38.462 9.63 0.00 33.92 2.45
471 472 6.755607 CCATCTCGATATGTAGGTTGATGATG 59.244 42.308 9.63 2.97 33.92 3.07
472 473 6.901081 TCTCGATATGTAGGTTGATGATGT 57.099 37.500 0.00 0.00 0.00 3.06
473 474 7.290110 TCTCGATATGTAGGTTGATGATGTT 57.710 36.000 0.00 0.00 0.00 2.71
474 475 7.371159 TCTCGATATGTAGGTTGATGATGTTC 58.629 38.462 0.00 0.00 0.00 3.18
475 476 7.014230 TCTCGATATGTAGGTTGATGATGTTCA 59.986 37.037 0.00 0.00 0.00 3.18
476 477 7.147976 TCGATATGTAGGTTGATGATGTTCAG 58.852 38.462 0.00 0.00 0.00 3.02
477 478 6.128715 CGATATGTAGGTTGATGATGTTCAGC 60.129 42.308 0.00 0.00 32.56 4.26
478 479 4.558226 TGTAGGTTGATGATGTTCAGCT 57.442 40.909 0.00 0.00 33.24 4.24
479 480 4.507710 TGTAGGTTGATGATGTTCAGCTC 58.492 43.478 0.00 0.00 33.24 4.09
480 481 2.625737 AGGTTGATGATGTTCAGCTCG 58.374 47.619 0.00 0.00 33.24 5.03
481 482 2.027745 AGGTTGATGATGTTCAGCTCGT 60.028 45.455 0.00 0.00 33.24 4.18
482 483 2.349886 GGTTGATGATGTTCAGCTCGTC 59.650 50.000 0.00 0.00 33.24 4.20
483 484 2.995939 GTTGATGATGTTCAGCTCGTCA 59.004 45.455 0.00 0.00 36.02 4.35
484 485 2.884827 TGATGATGTTCAGCTCGTCAG 58.115 47.619 2.67 0.00 33.24 3.51
503 504 4.003788 CACCCGTGCGGTCCTTCT 62.004 66.667 9.90 0.00 43.58 2.85
504 505 4.003788 ACCCGTGCGGTCCTTCTG 62.004 66.667 9.90 0.00 43.58 3.02
511 512 4.680237 CGGTCCTTCTGCACGCCA 62.680 66.667 0.00 0.00 0.00 5.69
512 513 2.743928 GGTCCTTCTGCACGCCAG 60.744 66.667 0.00 0.00 43.17 4.85
519 520 4.047834 CTGCACGCCAGAAGTTCA 57.952 55.556 5.50 0.00 44.64 3.18
520 521 1.864862 CTGCACGCCAGAAGTTCAG 59.135 57.895 5.50 0.00 44.64 3.02
521 522 0.882042 CTGCACGCCAGAAGTTCAGT 60.882 55.000 5.50 0.00 44.64 3.41
522 523 0.880278 TGCACGCCAGAAGTTCAGTC 60.880 55.000 5.50 0.00 0.00 3.51
523 524 1.569479 GCACGCCAGAAGTTCAGTCC 61.569 60.000 5.50 0.00 0.00 3.85
524 525 0.034059 CACGCCAGAAGTTCAGTCCT 59.966 55.000 5.50 0.00 0.00 3.85
525 526 0.759346 ACGCCAGAAGTTCAGTCCTT 59.241 50.000 5.50 0.00 0.00 3.36
526 527 1.151668 CGCCAGAAGTTCAGTCCTTG 58.848 55.000 5.50 0.00 0.00 3.61
527 528 0.877743 GCCAGAAGTTCAGTCCTTGC 59.122 55.000 5.50 0.00 0.00 4.01
528 529 1.528129 CCAGAAGTTCAGTCCTTGCC 58.472 55.000 5.50 0.00 0.00 4.52
529 530 1.151668 CAGAAGTTCAGTCCTTGCCG 58.848 55.000 5.50 0.00 0.00 5.69
530 531 0.035458 AGAAGTTCAGTCCTTGCCGG 59.965 55.000 5.50 0.00 0.00 6.13
531 532 0.955919 GAAGTTCAGTCCTTGCCGGG 60.956 60.000 2.18 0.00 0.00 5.73
532 533 1.705997 AAGTTCAGTCCTTGCCGGGT 61.706 55.000 2.18 0.00 0.00 5.28
533 534 1.671379 GTTCAGTCCTTGCCGGGTC 60.671 63.158 2.18 0.00 0.00 4.46
534 535 2.144078 TTCAGTCCTTGCCGGGTCA 61.144 57.895 2.18 0.00 0.00 4.02
535 536 2.358737 CAGTCCTTGCCGGGTCAC 60.359 66.667 2.18 0.00 0.00 3.67
536 537 2.526873 AGTCCTTGCCGGGTCACT 60.527 61.111 2.18 0.00 0.00 3.41
537 538 2.147387 AGTCCTTGCCGGGTCACTT 61.147 57.895 2.18 0.00 0.00 3.16
538 539 1.671379 GTCCTTGCCGGGTCACTTC 60.671 63.158 2.18 0.00 0.00 3.01
539 540 2.359975 CCTTGCCGGGTCACTTCC 60.360 66.667 2.18 0.00 0.00 3.46
540 541 2.750350 CTTGCCGGGTCACTTCCT 59.250 61.111 2.18 0.00 0.00 3.36
541 542 1.550130 CCTTGCCGGGTCACTTCCTA 61.550 60.000 2.18 0.00 0.00 2.94
542 543 0.108138 CTTGCCGGGTCACTTCCTAG 60.108 60.000 2.18 0.00 0.00 3.02
543 544 0.834687 TTGCCGGGTCACTTCCTAGT 60.835 55.000 2.18 0.00 34.00 2.57
556 557 1.204146 TCCTAGTGGAAGGACATGGC 58.796 55.000 0.00 0.00 40.86 4.40
557 558 0.911769 CCTAGTGGAAGGACATGGCA 59.088 55.000 0.00 0.00 39.15 4.92
558 559 1.281867 CCTAGTGGAAGGACATGGCAA 59.718 52.381 0.00 0.00 39.15 4.52
559 560 2.636830 CTAGTGGAAGGACATGGCAAG 58.363 52.381 0.00 0.00 0.00 4.01
560 561 1.067295 AGTGGAAGGACATGGCAAGA 58.933 50.000 0.00 0.00 0.00 3.02
561 562 1.004044 AGTGGAAGGACATGGCAAGAG 59.996 52.381 0.00 0.00 0.00 2.85
562 563 0.322816 TGGAAGGACATGGCAAGAGC 60.323 55.000 0.00 0.00 41.10 4.09
579 580 2.949106 CCTTTGGTCTGCGTGCAG 59.051 61.111 15.59 15.59 44.86 4.41
597 598 6.035650 GCGTGCAGACATACTAATGTTTCTTA 59.964 38.462 0.00 0.00 46.49 2.10
625 626 6.868339 TGTCGTATGTGATTTATCATGCTAGG 59.132 38.462 0.00 0.00 39.30 3.02
634 635 7.383300 GTGATTTATCATGCTAGGAAATTTGCC 59.617 37.037 6.02 2.57 39.30 4.52
706 720 4.008074 ACATTCTGTTCGACTCATGGTT 57.992 40.909 0.00 0.00 0.00 3.67
717 731 1.851021 CTCATGGTTTGCGCGTGGAA 61.851 55.000 8.43 0.00 0.00 3.53
718 732 1.007964 CATGGTTTGCGCGTGGAAA 60.008 52.632 11.85 11.85 32.55 3.13
727 741 1.225745 CGCGTGGAAAATCAGTCGC 60.226 57.895 0.00 0.00 40.19 5.19
852 872 4.025401 CACCAGAACGCGCCCAAC 62.025 66.667 5.73 0.00 0.00 3.77
1500 1535 3.706373 TGGCTCCTCTTGTCGCCC 61.706 66.667 0.00 0.00 41.80 6.13
1588 1623 0.874390 TCATCAAGAAGTTGCACCGC 59.126 50.000 0.00 0.00 33.23 5.68
1589 1624 0.453282 CATCAAGAAGTTGCACCGCG 60.453 55.000 0.00 0.00 33.23 6.46
1590 1625 2.187599 ATCAAGAAGTTGCACCGCGC 62.188 55.000 0.00 0.00 42.89 6.86
1591 1626 3.660111 AAGAAGTTGCACCGCGCC 61.660 61.111 0.00 0.00 41.33 6.53
1637 1672 1.162698 GGGCTGTAAAGGTTCGGTTC 58.837 55.000 0.00 0.00 0.00 3.62
1653 1688 0.599204 GTTCCCGTCAGCTGTTCGAA 60.599 55.000 25.94 15.92 0.00 3.71
1669 1704 2.035783 AAGAAAAGCCTCCCCGCC 59.964 61.111 0.00 0.00 0.00 6.13
1688 1723 1.202313 CCTTGCTCTGTAGTCGTAGCC 60.202 57.143 0.00 0.00 33.99 3.93
1788 1827 4.072131 GGAGAACCTTGCAATGTCAACTA 58.928 43.478 7.87 0.00 0.00 2.24
1871 1912 9.981114 ATTGTGAATTGTGATCGTATGATAGTA 57.019 29.630 0.00 0.00 34.09 1.82
1880 1921 5.127194 TGATCGTATGATAGTAATGGGGAGC 59.873 44.000 0.00 0.00 34.09 4.70
1931 1972 2.288334 GCATCACAGTTGGCAATGTCAA 60.288 45.455 1.92 0.00 0.00 3.18
1972 2013 5.941948 AACCTAGGAAACAAGTTTGATCG 57.058 39.130 17.98 0.00 32.11 3.69
2096 3536 4.515567 CCAACTCAACCTAGGAAACAAGTC 59.484 45.833 17.98 0.00 0.00 3.01
2108 3548 5.634118 AGGAAACAAGTCTGATCCAATCAA 58.366 37.500 0.00 0.00 39.11 2.57
2210 3650 4.016444 AGGATAATGTGGCGTGTGATTTT 58.984 39.130 0.00 0.00 0.00 1.82
2285 3727 7.042335 CCCTTCTATAATCACGAAACTCACTT 58.958 38.462 0.00 0.00 0.00 3.16
2305 3747 7.988737 TCACTTATTCATGGCTTGAACAATAG 58.011 34.615 16.89 13.30 46.80 1.73
2370 3817 4.086706 TCCCTCTCCAAAAAGAGAACAC 57.913 45.455 2.53 0.00 44.67 3.32
2532 3990 6.238842 GCATCTTGTTCTATATGCAACCATGT 60.239 38.462 0.00 0.00 43.30 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.645067 GGTGTGGTTAGGGATGTAGTTAAAC 59.355 44.000 0.00 0.00 0.00 2.01
1 2 5.548836 AGGTGTGGTTAGGGATGTAGTTAAA 59.451 40.000 0.00 0.00 0.00 1.52
2 3 5.095809 AGGTGTGGTTAGGGATGTAGTTAA 58.904 41.667 0.00 0.00 0.00 2.01
3 4 4.691238 AGGTGTGGTTAGGGATGTAGTTA 58.309 43.478 0.00 0.00 0.00 2.24
4 5 3.518303 GAGGTGTGGTTAGGGATGTAGTT 59.482 47.826 0.00 0.00 0.00 2.24
5 6 3.105283 GAGGTGTGGTTAGGGATGTAGT 58.895 50.000 0.00 0.00 0.00 2.73
6 7 3.104512 TGAGGTGTGGTTAGGGATGTAG 58.895 50.000 0.00 0.00 0.00 2.74
7 8 3.193395 TGAGGTGTGGTTAGGGATGTA 57.807 47.619 0.00 0.00 0.00 2.29
8 9 2.038863 TGAGGTGTGGTTAGGGATGT 57.961 50.000 0.00 0.00 0.00 3.06
9 10 2.774234 AGATGAGGTGTGGTTAGGGATG 59.226 50.000 0.00 0.00 0.00 3.51
10 11 2.774234 CAGATGAGGTGTGGTTAGGGAT 59.226 50.000 0.00 0.00 0.00 3.85
11 12 2.187958 CAGATGAGGTGTGGTTAGGGA 58.812 52.381 0.00 0.00 0.00 4.20
12 13 1.407437 GCAGATGAGGTGTGGTTAGGG 60.407 57.143 0.00 0.00 0.00 3.53
13 14 1.556911 AGCAGATGAGGTGTGGTTAGG 59.443 52.381 0.00 0.00 0.00 2.69
14 15 3.265791 GAAGCAGATGAGGTGTGGTTAG 58.734 50.000 0.00 0.00 41.28 2.34
15 16 2.027192 GGAAGCAGATGAGGTGTGGTTA 60.027 50.000 0.00 0.00 41.28 2.85
16 17 1.271597 GGAAGCAGATGAGGTGTGGTT 60.272 52.381 0.00 0.00 43.53 3.67
17 18 0.326264 GGAAGCAGATGAGGTGTGGT 59.674 55.000 0.00 0.00 32.58 4.16
18 19 0.617413 AGGAAGCAGATGAGGTGTGG 59.383 55.000 0.00 0.00 0.00 4.17
19 20 1.554160 AGAGGAAGCAGATGAGGTGTG 59.446 52.381 0.00 0.00 0.00 3.82
20 21 1.949799 AGAGGAAGCAGATGAGGTGT 58.050 50.000 0.00 0.00 0.00 4.16
21 22 2.223688 CGTAGAGGAAGCAGATGAGGTG 60.224 54.545 0.00 0.00 0.00 4.00
22 23 2.028130 CGTAGAGGAAGCAGATGAGGT 58.972 52.381 0.00 0.00 0.00 3.85
23 24 2.034053 GTCGTAGAGGAAGCAGATGAGG 59.966 54.545 0.00 0.00 36.95 3.86
24 25 2.286713 CGTCGTAGAGGAAGCAGATGAG 60.287 54.545 0.00 0.00 46.48 2.90
25 26 1.671328 CGTCGTAGAGGAAGCAGATGA 59.329 52.381 0.00 0.00 46.48 2.92
26 27 1.268794 CCGTCGTAGAGGAAGCAGATG 60.269 57.143 0.00 0.00 46.48 2.90
27 28 1.025812 CCGTCGTAGAGGAAGCAGAT 58.974 55.000 0.00 0.00 46.48 2.90
28 29 0.035725 TCCGTCGTAGAGGAAGCAGA 60.036 55.000 0.00 0.00 46.48 4.26
29 30 0.378962 CTCCGTCGTAGAGGAAGCAG 59.621 60.000 0.00 0.00 46.48 4.24
30 31 1.654954 GCTCCGTCGTAGAGGAAGCA 61.655 60.000 0.00 0.00 46.48 3.91
31 32 1.064458 GCTCCGTCGTAGAGGAAGC 59.936 63.158 0.00 0.00 46.48 3.86
32 33 0.099082 GTGCTCCGTCGTAGAGGAAG 59.901 60.000 0.00 0.00 46.48 3.46
33 34 0.322277 AGTGCTCCGTCGTAGAGGAA 60.322 55.000 0.00 0.00 46.48 3.36
34 35 0.538584 TAGTGCTCCGTCGTAGAGGA 59.461 55.000 0.00 0.00 46.48 3.71
35 36 0.656785 GTAGTGCTCCGTCGTAGAGG 59.343 60.000 0.00 0.00 42.73 3.69
36 37 0.656785 GGTAGTGCTCCGTCGTAGAG 59.343 60.000 0.00 0.00 36.95 2.43
37 38 0.251354 AGGTAGTGCTCCGTCGTAGA 59.749 55.000 0.00 0.00 0.00 2.59
38 39 0.656785 GAGGTAGTGCTCCGTCGTAG 59.343 60.000 0.00 0.00 0.00 3.51
39 40 0.036105 TGAGGTAGTGCTCCGTCGTA 60.036 55.000 0.00 0.00 0.00 3.43
40 41 0.680280 ATGAGGTAGTGCTCCGTCGT 60.680 55.000 0.00 0.00 0.00 4.34
41 42 0.029567 GATGAGGTAGTGCTCCGTCG 59.970 60.000 0.00 0.00 0.00 5.12
42 43 1.394618 AGATGAGGTAGTGCTCCGTC 58.605 55.000 0.00 0.00 0.00 4.79
43 44 1.751924 GAAGATGAGGTAGTGCTCCGT 59.248 52.381 0.00 0.00 0.00 4.69
44 45 1.751351 TGAAGATGAGGTAGTGCTCCG 59.249 52.381 0.00 0.00 0.00 4.63
45 46 2.159028 GGTGAAGATGAGGTAGTGCTCC 60.159 54.545 0.00 0.00 0.00 4.70
46 47 2.497675 TGGTGAAGATGAGGTAGTGCTC 59.502 50.000 0.00 0.00 0.00 4.26
47 48 2.234908 GTGGTGAAGATGAGGTAGTGCT 59.765 50.000 0.00 0.00 0.00 4.40
48 49 2.622436 GTGGTGAAGATGAGGTAGTGC 58.378 52.381 0.00 0.00 0.00 4.40
49 50 2.567169 TGGTGGTGAAGATGAGGTAGTG 59.433 50.000 0.00 0.00 0.00 2.74
50 51 2.902608 TGGTGGTGAAGATGAGGTAGT 58.097 47.619 0.00 0.00 0.00 2.73
51 52 5.614324 TTATGGTGGTGAAGATGAGGTAG 57.386 43.478 0.00 0.00 0.00 3.18
52 53 6.157820 TCATTTATGGTGGTGAAGATGAGGTA 59.842 38.462 0.00 0.00 0.00 3.08
53 54 4.927267 TTTATGGTGGTGAAGATGAGGT 57.073 40.909 0.00 0.00 0.00 3.85
54 55 5.297776 GTCATTTATGGTGGTGAAGATGAGG 59.702 44.000 0.00 0.00 0.00 3.86
55 56 5.007039 CGTCATTTATGGTGGTGAAGATGAG 59.993 44.000 0.00 0.00 0.00 2.90
56 57 4.875536 CGTCATTTATGGTGGTGAAGATGA 59.124 41.667 0.00 0.00 0.00 2.92
57 58 4.875536 TCGTCATTTATGGTGGTGAAGATG 59.124 41.667 0.00 0.00 0.00 2.90
58 59 4.876107 GTCGTCATTTATGGTGGTGAAGAT 59.124 41.667 0.00 0.00 33.12 2.40
59 60 4.250464 GTCGTCATTTATGGTGGTGAAGA 58.750 43.478 0.00 0.00 0.00 2.87
60 61 4.000325 TGTCGTCATTTATGGTGGTGAAG 59.000 43.478 0.00 0.00 0.00 3.02
61 62 3.749088 GTGTCGTCATTTATGGTGGTGAA 59.251 43.478 0.00 0.00 0.00 3.18
62 63 3.007506 AGTGTCGTCATTTATGGTGGTGA 59.992 43.478 0.00 0.00 0.00 4.02
63 64 3.334691 AGTGTCGTCATTTATGGTGGTG 58.665 45.455 0.00 0.00 0.00 4.17
64 65 3.695830 AGTGTCGTCATTTATGGTGGT 57.304 42.857 0.00 0.00 0.00 4.16
65 66 4.566759 CAGTAGTGTCGTCATTTATGGTGG 59.433 45.833 0.00 0.00 0.00 4.61
66 67 4.032900 GCAGTAGTGTCGTCATTTATGGTG 59.967 45.833 0.00 0.00 0.00 4.17
67 68 4.181578 GCAGTAGTGTCGTCATTTATGGT 58.818 43.478 0.00 0.00 0.00 3.55
68 69 3.242944 CGCAGTAGTGTCGTCATTTATGG 59.757 47.826 0.00 0.00 0.00 2.74
69 70 3.301835 GCGCAGTAGTGTCGTCATTTATG 60.302 47.826 0.30 0.00 0.00 1.90
70 71 2.858344 GCGCAGTAGTGTCGTCATTTAT 59.142 45.455 0.30 0.00 0.00 1.40
71 72 2.256174 GCGCAGTAGTGTCGTCATTTA 58.744 47.619 0.30 0.00 0.00 1.40
72 73 1.068474 GCGCAGTAGTGTCGTCATTT 58.932 50.000 0.30 0.00 0.00 2.32
73 74 0.736325 GGCGCAGTAGTGTCGTCATT 60.736 55.000 10.83 0.00 31.04 2.57
74 75 1.153823 GGCGCAGTAGTGTCGTCAT 60.154 57.895 10.83 0.00 31.04 3.06
75 76 2.257371 GGCGCAGTAGTGTCGTCA 59.743 61.111 10.83 0.00 31.04 4.35
79 80 0.179134 ATCTTCGGCGCAGTAGTGTC 60.179 55.000 10.83 0.00 0.00 3.67
80 81 0.246635 AATCTTCGGCGCAGTAGTGT 59.753 50.000 10.83 0.00 0.00 3.55
81 82 1.324736 GAAATCTTCGGCGCAGTAGTG 59.675 52.381 10.83 0.00 0.00 2.74
82 83 1.641577 GAAATCTTCGGCGCAGTAGT 58.358 50.000 10.83 0.00 0.00 2.73
93 94 3.751698 AGTACCAGTTTGCCGAAATCTTC 59.248 43.478 0.00 0.00 0.00 2.87
94 95 3.751518 AGTACCAGTTTGCCGAAATCTT 58.248 40.909 0.00 0.00 0.00 2.40
95 96 3.418684 AGTACCAGTTTGCCGAAATCT 57.581 42.857 0.00 0.00 0.00 2.40
96 97 4.694037 AGTAAGTACCAGTTTGCCGAAATC 59.306 41.667 0.00 0.00 0.00 2.17
97 98 4.648651 AGTAAGTACCAGTTTGCCGAAAT 58.351 39.130 0.00 0.00 0.00 2.17
98 99 4.060205 GAGTAAGTACCAGTTTGCCGAAA 58.940 43.478 0.00 0.00 0.00 3.46
99 100 3.555586 GGAGTAAGTACCAGTTTGCCGAA 60.556 47.826 0.00 0.00 0.00 4.30
100 101 2.028748 GGAGTAAGTACCAGTTTGCCGA 60.029 50.000 0.00 0.00 0.00 5.54
101 102 2.028385 AGGAGTAAGTACCAGTTTGCCG 60.028 50.000 0.00 0.00 0.00 5.69
102 103 3.697619 AGGAGTAAGTACCAGTTTGCC 57.302 47.619 0.00 0.00 0.00 4.52
103 104 4.691216 CAGAAGGAGTAAGTACCAGTTTGC 59.309 45.833 0.00 0.00 0.00 3.68
104 105 5.855045 ACAGAAGGAGTAAGTACCAGTTTG 58.145 41.667 0.00 0.00 0.00 2.93
105 106 6.326843 AGAACAGAAGGAGTAAGTACCAGTTT 59.673 38.462 0.00 0.00 0.00 2.66
106 107 5.839606 AGAACAGAAGGAGTAAGTACCAGTT 59.160 40.000 0.00 0.00 0.00 3.16
107 108 5.395611 AGAACAGAAGGAGTAAGTACCAGT 58.604 41.667 0.00 0.00 0.00 4.00
108 109 5.986501 AGAACAGAAGGAGTAAGTACCAG 57.013 43.478 0.00 0.00 0.00 4.00
109 110 7.256083 GGTTTAGAACAGAAGGAGTAAGTACCA 60.256 40.741 0.00 0.00 0.00 3.25
110 111 7.039152 AGGTTTAGAACAGAAGGAGTAAGTACC 60.039 40.741 0.00 0.00 0.00 3.34
111 112 7.894708 AGGTTTAGAACAGAAGGAGTAAGTAC 58.105 38.462 0.00 0.00 0.00 2.73
112 113 9.765295 ATAGGTTTAGAACAGAAGGAGTAAGTA 57.235 33.333 0.00 0.00 0.00 2.24
113 114 6.997942 AGGTTTAGAACAGAAGGAGTAAGT 57.002 37.500 0.00 0.00 0.00 2.24
114 115 8.973182 AGATAGGTTTAGAACAGAAGGAGTAAG 58.027 37.037 0.00 0.00 0.00 2.34
115 116 8.896722 AGATAGGTTTAGAACAGAAGGAGTAA 57.103 34.615 0.00 0.00 0.00 2.24
116 117 8.337739 AGAGATAGGTTTAGAACAGAAGGAGTA 58.662 37.037 0.00 0.00 0.00 2.59
117 118 7.186268 AGAGATAGGTTTAGAACAGAAGGAGT 58.814 38.462 0.00 0.00 0.00 3.85
118 119 7.559897 AGAGAGATAGGTTTAGAACAGAAGGAG 59.440 40.741 0.00 0.00 0.00 3.69
119 120 7.415086 AGAGAGATAGGTTTAGAACAGAAGGA 58.585 38.462 0.00 0.00 0.00 3.36
120 121 7.559897 AGAGAGAGATAGGTTTAGAACAGAAGG 59.440 40.741 0.00 0.00 0.00 3.46
121 122 8.519799 AGAGAGAGATAGGTTTAGAACAGAAG 57.480 38.462 0.00 0.00 0.00 2.85
122 123 8.887264 AAGAGAGAGATAGGTTTAGAACAGAA 57.113 34.615 0.00 0.00 0.00 3.02
123 124 8.887264 AAAGAGAGAGATAGGTTTAGAACAGA 57.113 34.615 0.00 0.00 0.00 3.41
124 125 9.364989 CAAAAGAGAGAGATAGGTTTAGAACAG 57.635 37.037 0.00 0.00 0.00 3.16
125 126 8.871125 ACAAAAGAGAGAGATAGGTTTAGAACA 58.129 33.333 0.00 0.00 0.00 3.18
126 127 9.713713 AACAAAAGAGAGAGATAGGTTTAGAAC 57.286 33.333 0.00 0.00 0.00 3.01
170 171 8.527810 GGATGATTAAATAAAGGTGTGGTTGAA 58.472 33.333 0.00 0.00 0.00 2.69
171 172 7.123547 GGGATGATTAAATAAAGGTGTGGTTGA 59.876 37.037 0.00 0.00 0.00 3.18
172 173 7.093552 TGGGATGATTAAATAAAGGTGTGGTTG 60.094 37.037 0.00 0.00 0.00 3.77
173 174 6.957020 TGGGATGATTAAATAAAGGTGTGGTT 59.043 34.615 0.00 0.00 0.00 3.67
174 175 6.379988 GTGGGATGATTAAATAAAGGTGTGGT 59.620 38.462 0.00 0.00 0.00 4.16
175 176 6.379703 TGTGGGATGATTAAATAAAGGTGTGG 59.620 38.462 0.00 0.00 0.00 4.17
176 177 7.257722 GTGTGGGATGATTAAATAAAGGTGTG 58.742 38.462 0.00 0.00 0.00 3.82
177 178 6.379988 GGTGTGGGATGATTAAATAAAGGTGT 59.620 38.462 0.00 0.00 0.00 4.16
178 179 6.459573 CGGTGTGGGATGATTAAATAAAGGTG 60.460 42.308 0.00 0.00 0.00 4.00
179 180 5.592688 CGGTGTGGGATGATTAAATAAAGGT 59.407 40.000 0.00 0.00 0.00 3.50
180 181 5.009610 CCGGTGTGGGATGATTAAATAAAGG 59.990 44.000 0.00 0.00 0.00 3.11
181 182 6.072112 CCGGTGTGGGATGATTAAATAAAG 57.928 41.667 0.00 0.00 0.00 1.85
196 197 2.052690 AGACGAGATCCCGGTGTGG 61.053 63.158 0.53 0.00 37.55 4.17
197 198 1.139734 CAGACGAGATCCCGGTGTG 59.860 63.158 0.53 0.00 0.00 3.82
198 199 1.001269 TCAGACGAGATCCCGGTGT 60.001 57.895 0.53 0.00 0.00 4.16
199 200 0.748367 TCTCAGACGAGATCCCGGTG 60.748 60.000 0.53 0.00 43.55 4.94
200 201 1.608154 TCTCAGACGAGATCCCGGT 59.392 57.895 0.53 0.00 43.55 5.28
201 202 4.561452 TCTCAGACGAGATCCCGG 57.439 61.111 0.53 0.00 43.55 5.73
208 209 9.574458 TTCATTTTAAAGACTATCTCAGACGAG 57.426 33.333 0.00 0.00 40.98 4.18
209 210 9.923143 TTTCATTTTAAAGACTATCTCAGACGA 57.077 29.630 0.00 0.00 0.00 4.20
216 217 9.413734 CCCCAGATTTCATTTTAAAGACTATCT 57.586 33.333 0.00 0.00 0.00 1.98
217 218 8.633561 CCCCCAGATTTCATTTTAAAGACTATC 58.366 37.037 0.00 0.00 0.00 2.08
218 219 7.069950 GCCCCCAGATTTCATTTTAAAGACTAT 59.930 37.037 0.00 0.00 0.00 2.12
219 220 6.379988 GCCCCCAGATTTCATTTTAAAGACTA 59.620 38.462 0.00 0.00 0.00 2.59
220 221 5.187772 GCCCCCAGATTTCATTTTAAAGACT 59.812 40.000 0.00 0.00 0.00 3.24
221 222 5.046663 TGCCCCCAGATTTCATTTTAAAGAC 60.047 40.000 0.00 0.00 0.00 3.01
222 223 5.046663 GTGCCCCCAGATTTCATTTTAAAGA 60.047 40.000 0.00 0.00 0.00 2.52
223 224 5.178061 GTGCCCCCAGATTTCATTTTAAAG 58.822 41.667 0.00 0.00 0.00 1.85
224 225 4.594920 TGTGCCCCCAGATTTCATTTTAAA 59.405 37.500 0.00 0.00 0.00 1.52
225 226 4.163427 TGTGCCCCCAGATTTCATTTTAA 58.837 39.130 0.00 0.00 0.00 1.52
226 227 3.784178 TGTGCCCCCAGATTTCATTTTA 58.216 40.909 0.00 0.00 0.00 1.52
227 228 2.618794 TGTGCCCCCAGATTTCATTTT 58.381 42.857 0.00 0.00 0.00 1.82
228 229 2.323999 TGTGCCCCCAGATTTCATTT 57.676 45.000 0.00 0.00 0.00 2.32
229 230 2.112998 CATGTGCCCCCAGATTTCATT 58.887 47.619 0.00 0.00 0.00 2.57
230 231 1.784358 CATGTGCCCCCAGATTTCAT 58.216 50.000 0.00 0.00 0.00 2.57
231 232 0.971959 GCATGTGCCCCCAGATTTCA 60.972 55.000 0.00 0.00 34.31 2.69
232 233 0.971959 TGCATGTGCCCCCAGATTTC 60.972 55.000 2.07 0.00 41.18 2.17
233 234 0.974010 CTGCATGTGCCCCCAGATTT 60.974 55.000 2.07 0.00 41.18 2.17
234 235 1.380785 CTGCATGTGCCCCCAGATT 60.381 57.895 2.07 0.00 41.18 2.40
235 236 2.277737 CTGCATGTGCCCCCAGAT 59.722 61.111 2.07 0.00 41.18 2.90
236 237 4.746309 GCTGCATGTGCCCCCAGA 62.746 66.667 2.07 0.00 41.18 3.86
243 244 1.373748 CAAGGTTGGCTGCATGTGC 60.374 57.895 0.50 0.00 42.50 4.57
244 245 1.246649 TACAAGGTTGGCTGCATGTG 58.753 50.000 0.50 0.00 0.00 3.21
245 246 2.220653 ATACAAGGTTGGCTGCATGT 57.779 45.000 0.50 0.00 0.00 3.21
246 247 4.924305 ATTATACAAGGTTGGCTGCATG 57.076 40.909 0.50 0.00 0.00 4.06
247 248 5.937975 AAATTATACAAGGTTGGCTGCAT 57.062 34.783 0.50 0.00 0.00 3.96
248 249 6.184068 TCTAAATTATACAAGGTTGGCTGCA 58.816 36.000 0.50 0.00 0.00 4.41
249 250 6.693315 TCTAAATTATACAAGGTTGGCTGC 57.307 37.500 0.00 0.00 0.00 5.25
250 251 7.141363 GCATCTAAATTATACAAGGTTGGCTG 58.859 38.462 0.00 0.00 0.00 4.85
251 252 6.833416 TGCATCTAAATTATACAAGGTTGGCT 59.167 34.615 0.00 0.00 0.00 4.75
252 253 7.038154 TGCATCTAAATTATACAAGGTTGGC 57.962 36.000 0.00 0.00 0.00 4.52
253 254 8.686334 AGTTGCATCTAAATTATACAAGGTTGG 58.314 33.333 0.00 0.00 0.00 3.77
254 255 9.507280 CAGTTGCATCTAAATTATACAAGGTTG 57.493 33.333 0.00 0.00 0.00 3.77
255 256 8.190784 GCAGTTGCATCTAAATTATACAAGGTT 58.809 33.333 0.00 0.00 41.59 3.50
256 257 7.557719 AGCAGTTGCATCTAAATTATACAAGGT 59.442 33.333 6.90 0.00 45.16 3.50
257 258 7.934457 AGCAGTTGCATCTAAATTATACAAGG 58.066 34.615 6.90 0.00 45.16 3.61
258 259 9.443283 GAAGCAGTTGCATCTAAATTATACAAG 57.557 33.333 6.90 0.00 45.16 3.16
259 260 8.405531 GGAAGCAGTTGCATCTAAATTATACAA 58.594 33.333 6.90 0.00 45.16 2.41
260 261 7.013274 GGGAAGCAGTTGCATCTAAATTATACA 59.987 37.037 6.90 0.00 45.16 2.29
261 262 7.229506 AGGGAAGCAGTTGCATCTAAATTATAC 59.770 37.037 6.90 0.00 45.16 1.47
262 263 7.290061 AGGGAAGCAGTTGCATCTAAATTATA 58.710 34.615 6.90 0.00 45.16 0.98
263 264 6.131961 AGGGAAGCAGTTGCATCTAAATTAT 58.868 36.000 6.90 0.00 45.16 1.28
264 265 5.509498 AGGGAAGCAGTTGCATCTAAATTA 58.491 37.500 6.90 0.00 45.16 1.40
265 266 4.347607 AGGGAAGCAGTTGCATCTAAATT 58.652 39.130 6.90 0.00 45.16 1.82
266 267 3.973425 AGGGAAGCAGTTGCATCTAAAT 58.027 40.909 6.90 0.00 45.16 1.40
267 268 3.439857 AGGGAAGCAGTTGCATCTAAA 57.560 42.857 6.90 0.00 45.16 1.85
268 269 4.142609 CTAGGGAAGCAGTTGCATCTAA 57.857 45.455 6.90 0.00 45.16 2.10
269 270 3.827008 CTAGGGAAGCAGTTGCATCTA 57.173 47.619 6.90 2.20 45.16 1.98
270 271 2.706339 CTAGGGAAGCAGTTGCATCT 57.294 50.000 6.90 0.00 45.16 2.90
281 282 3.391296 TGCCCACTTATTAGCTAGGGAAG 59.609 47.826 15.86 12.08 34.73 3.46
282 283 3.389866 TGCCCACTTATTAGCTAGGGAA 58.610 45.455 15.86 4.04 34.73 3.97
283 284 3.054779 TGCCCACTTATTAGCTAGGGA 57.945 47.619 15.86 0.72 34.73 4.20
284 285 3.136626 AGTTGCCCACTTATTAGCTAGGG 59.863 47.826 8.77 8.77 35.47 3.53
285 286 4.423625 AGTTGCCCACTTATTAGCTAGG 57.576 45.455 0.00 0.00 27.32 3.02
286 287 8.451908 AATAAAGTTGCCCACTTATTAGCTAG 57.548 34.615 0.00 0.00 45.77 3.42
287 288 9.555727 CTAATAAAGTTGCCCACTTATTAGCTA 57.444 33.333 7.24 0.00 45.77 3.32
288 289 7.013369 GCTAATAAAGTTGCCCACTTATTAGCT 59.987 37.037 24.58 0.00 45.77 3.32
289 290 7.139392 GCTAATAAAGTTGCCCACTTATTAGC 58.861 38.462 20.76 20.76 45.77 3.09
290 291 8.220755 TGCTAATAAAGTTGCCCACTTATTAG 57.779 34.615 12.77 12.77 45.77 1.73
291 292 8.760980 ATGCTAATAAAGTTGCCCACTTATTA 57.239 30.769 0.00 4.33 45.77 0.98
292 293 7.341769 TGATGCTAATAAAGTTGCCCACTTATT 59.658 33.333 0.00 3.59 45.77 1.40
293 294 6.833416 TGATGCTAATAAAGTTGCCCACTTAT 59.167 34.615 0.00 0.00 45.77 1.73
294 295 6.094881 GTGATGCTAATAAAGTTGCCCACTTA 59.905 38.462 0.00 0.00 45.77 2.24
296 297 4.399303 GTGATGCTAATAAAGTTGCCCACT 59.601 41.667 0.00 0.00 37.30 4.00
297 298 4.672409 GTGATGCTAATAAAGTTGCCCAC 58.328 43.478 0.00 0.00 0.00 4.61
298 299 3.376859 CGTGATGCTAATAAAGTTGCCCA 59.623 43.478 0.00 0.00 0.00 5.36
299 300 3.792124 GCGTGATGCTAATAAAGTTGCCC 60.792 47.826 0.00 0.00 41.73 5.36
300 301 3.363178 GCGTGATGCTAATAAAGTTGCC 58.637 45.455 0.00 0.00 41.73 4.52
301 302 3.065371 AGGCGTGATGCTAATAAAGTTGC 59.935 43.478 0.00 0.00 45.43 4.17
302 303 4.882671 AGGCGTGATGCTAATAAAGTTG 57.117 40.909 0.00 0.00 45.43 3.16
303 304 5.296035 GGTTAGGCGTGATGCTAATAAAGTT 59.704 40.000 0.00 0.00 45.43 2.66
304 305 4.814771 GGTTAGGCGTGATGCTAATAAAGT 59.185 41.667 0.00 0.00 45.43 2.66
305 306 4.213482 GGGTTAGGCGTGATGCTAATAAAG 59.787 45.833 0.00 0.00 45.43 1.85
306 307 4.131596 GGGTTAGGCGTGATGCTAATAAA 58.868 43.478 0.00 0.00 45.43 1.40
307 308 3.134985 TGGGTTAGGCGTGATGCTAATAA 59.865 43.478 0.00 0.00 45.43 1.40
308 309 2.701423 TGGGTTAGGCGTGATGCTAATA 59.299 45.455 0.00 0.00 45.43 0.98
309 310 1.488812 TGGGTTAGGCGTGATGCTAAT 59.511 47.619 0.00 0.00 45.43 1.73
310 311 0.906066 TGGGTTAGGCGTGATGCTAA 59.094 50.000 0.00 0.00 45.43 3.09
311 312 0.177141 GTGGGTTAGGCGTGATGCTA 59.823 55.000 0.00 0.00 45.43 3.49
312 313 1.078426 GTGGGTTAGGCGTGATGCT 60.078 57.895 0.00 0.00 45.43 3.79
313 314 2.461110 CGTGGGTTAGGCGTGATGC 61.461 63.158 0.00 0.00 45.38 3.91
314 315 0.390603 TTCGTGGGTTAGGCGTGATG 60.391 55.000 0.00 0.00 0.00 3.07
315 316 0.322322 TTTCGTGGGTTAGGCGTGAT 59.678 50.000 0.00 0.00 0.00 3.06
316 317 0.600782 GTTTCGTGGGTTAGGCGTGA 60.601 55.000 0.00 0.00 0.00 4.35
317 318 0.601841 AGTTTCGTGGGTTAGGCGTG 60.602 55.000 0.00 0.00 0.00 5.34
318 319 0.107268 AAGTTTCGTGGGTTAGGCGT 59.893 50.000 0.00 0.00 0.00 5.68
319 320 1.196127 GAAAGTTTCGTGGGTTAGGCG 59.804 52.381 0.00 0.00 0.00 5.52
320 321 1.538512 GGAAAGTTTCGTGGGTTAGGC 59.461 52.381 9.46 0.00 0.00 3.93
321 322 2.853705 TGGAAAGTTTCGTGGGTTAGG 58.146 47.619 9.46 0.00 0.00 2.69
322 323 3.881089 AGTTGGAAAGTTTCGTGGGTTAG 59.119 43.478 9.46 0.00 0.00 2.34
323 324 3.878699 GAGTTGGAAAGTTTCGTGGGTTA 59.121 43.478 9.46 0.00 0.00 2.85
324 325 2.686405 GAGTTGGAAAGTTTCGTGGGTT 59.314 45.455 9.46 0.00 0.00 4.11
325 326 2.294979 GAGTTGGAAAGTTTCGTGGGT 58.705 47.619 9.46 0.00 0.00 4.51
326 327 1.607148 GGAGTTGGAAAGTTTCGTGGG 59.393 52.381 9.46 0.00 0.00 4.61
327 328 1.607148 GGGAGTTGGAAAGTTTCGTGG 59.393 52.381 9.46 0.00 0.00 4.94
328 329 1.607148 GGGGAGTTGGAAAGTTTCGTG 59.393 52.381 9.46 0.00 0.00 4.35
329 330 1.478105 GGGGGAGTTGGAAAGTTTCGT 60.478 52.381 9.46 0.00 0.00 3.85
330 331 1.202891 AGGGGGAGTTGGAAAGTTTCG 60.203 52.381 9.46 0.00 0.00 3.46
331 332 2.158519 TGAGGGGGAGTTGGAAAGTTTC 60.159 50.000 7.09 7.09 0.00 2.78
332 333 1.856920 TGAGGGGGAGTTGGAAAGTTT 59.143 47.619 0.00 0.00 0.00 2.66
333 334 1.529744 TGAGGGGGAGTTGGAAAGTT 58.470 50.000 0.00 0.00 0.00 2.66
334 335 1.425448 CTTGAGGGGGAGTTGGAAAGT 59.575 52.381 0.00 0.00 0.00 2.66
335 336 1.272147 CCTTGAGGGGGAGTTGGAAAG 60.272 57.143 0.00 0.00 0.00 2.62
336 337 0.777446 CCTTGAGGGGGAGTTGGAAA 59.223 55.000 0.00 0.00 0.00 3.13
337 338 1.789576 GCCTTGAGGGGGAGTTGGAA 61.790 60.000 0.00 0.00 35.18 3.53
338 339 2.231380 GCCTTGAGGGGGAGTTGGA 61.231 63.158 0.00 0.00 35.18 3.53
339 340 2.356667 GCCTTGAGGGGGAGTTGG 59.643 66.667 0.00 0.00 35.18 3.77
340 341 2.080336 TTGGCCTTGAGGGGGAGTTG 62.080 60.000 3.32 0.00 35.18 3.16
341 342 1.149133 ATTGGCCTTGAGGGGGAGTT 61.149 55.000 3.32 0.00 35.18 3.01
342 343 0.253630 TATTGGCCTTGAGGGGGAGT 60.254 55.000 3.32 0.00 35.18 3.85
343 344 0.475906 CTATTGGCCTTGAGGGGGAG 59.524 60.000 3.32 0.00 35.18 4.30
344 345 0.045623 TCTATTGGCCTTGAGGGGGA 59.954 55.000 3.32 0.00 35.18 4.81
345 346 0.183731 GTCTATTGGCCTTGAGGGGG 59.816 60.000 3.32 0.00 35.18 5.40
346 347 0.179045 CGTCTATTGGCCTTGAGGGG 60.179 60.000 3.32 0.00 35.18 4.79
347 348 0.815615 GCGTCTATTGGCCTTGAGGG 60.816 60.000 3.32 0.00 35.18 4.30
348 349 0.179000 AGCGTCTATTGGCCTTGAGG 59.821 55.000 3.32 3.90 38.53 3.86
349 350 1.667724 CAAGCGTCTATTGGCCTTGAG 59.332 52.381 3.32 0.00 0.00 3.02
350 351 1.277842 TCAAGCGTCTATTGGCCTTGA 59.722 47.619 3.32 0.00 0.00 3.02
351 352 1.398390 GTCAAGCGTCTATTGGCCTTG 59.602 52.381 3.32 0.00 0.00 3.61
352 353 1.679032 GGTCAAGCGTCTATTGGCCTT 60.679 52.381 3.32 0.00 46.69 4.35
353 354 0.107654 GGTCAAGCGTCTATTGGCCT 60.108 55.000 3.32 0.00 46.69 5.19
354 355 2.394604 GGTCAAGCGTCTATTGGCC 58.605 57.895 0.00 0.00 44.54 5.36
355 356 1.291132 GAGGTCAAGCGTCTATTGGC 58.709 55.000 0.00 0.00 0.00 4.52
356 357 1.482593 AGGAGGTCAAGCGTCTATTGG 59.517 52.381 0.00 0.00 32.91 3.16
357 358 2.482142 GGAGGAGGTCAAGCGTCTATTG 60.482 54.545 0.00 0.00 32.91 1.90
358 359 1.757699 GGAGGAGGTCAAGCGTCTATT 59.242 52.381 0.00 0.00 32.91 1.73
359 360 1.342076 TGGAGGAGGTCAAGCGTCTAT 60.342 52.381 0.00 0.00 32.91 1.98
360 361 0.039180 TGGAGGAGGTCAAGCGTCTA 59.961 55.000 0.00 0.00 32.91 2.59
361 362 1.228894 TGGAGGAGGTCAAGCGTCT 60.229 57.895 0.00 0.00 32.91 4.18
362 363 1.079750 GTGGAGGAGGTCAAGCGTC 60.080 63.158 0.00 0.00 0.00 5.19
363 364 1.407656 TTGTGGAGGAGGTCAAGCGT 61.408 55.000 0.00 0.00 0.00 5.07
364 365 0.036010 ATTGTGGAGGAGGTCAAGCG 60.036 55.000 0.00 0.00 0.00 4.68
365 366 2.420687 CCTATTGTGGAGGAGGTCAAGC 60.421 54.545 0.00 0.00 35.99 4.01
366 367 2.420687 GCCTATTGTGGAGGAGGTCAAG 60.421 54.545 0.00 0.00 35.99 3.02
367 368 1.559682 GCCTATTGTGGAGGAGGTCAA 59.440 52.381 0.00 0.00 35.99 3.18
368 369 1.204146 GCCTATTGTGGAGGAGGTCA 58.796 55.000 0.00 0.00 35.99 4.02
369 370 0.470341 GGCCTATTGTGGAGGAGGTC 59.530 60.000 0.00 0.00 35.99 3.85
370 371 0.988678 GGGCCTATTGTGGAGGAGGT 60.989 60.000 0.84 0.00 35.99 3.85
371 372 1.709994 GGGGCCTATTGTGGAGGAGG 61.710 65.000 0.84 0.00 35.99 4.30
372 373 0.988145 TGGGGCCTATTGTGGAGGAG 60.988 60.000 0.84 0.00 35.99 3.69
373 374 0.988145 CTGGGGCCTATTGTGGAGGA 60.988 60.000 0.84 0.00 35.99 3.71
374 375 1.533711 CTGGGGCCTATTGTGGAGG 59.466 63.158 0.84 0.00 37.12 4.30
375 376 1.152881 GCTGGGGCCTATTGTGGAG 60.153 63.158 0.84 0.00 0.00 3.86
376 377 3.006677 GCTGGGGCCTATTGTGGA 58.993 61.111 0.84 0.00 0.00 4.02
377 378 2.343475 ATCGCTGGGGCCTATTGTGG 62.343 60.000 0.84 0.00 34.44 4.17
378 379 1.149174 ATCGCTGGGGCCTATTGTG 59.851 57.895 0.84 0.00 34.44 3.33
379 380 1.149174 CATCGCTGGGGCCTATTGT 59.851 57.895 0.84 0.00 34.44 2.71
380 381 0.886490 GTCATCGCTGGGGCCTATTG 60.886 60.000 0.84 0.00 34.44 1.90
381 382 1.344953 TGTCATCGCTGGGGCCTATT 61.345 55.000 0.84 0.00 34.44 1.73
382 383 1.344953 TTGTCATCGCTGGGGCCTAT 61.345 55.000 0.84 0.00 34.44 2.57
383 384 1.971505 CTTGTCATCGCTGGGGCCTA 61.972 60.000 0.84 0.00 34.44 3.93
384 385 3.329889 TTGTCATCGCTGGGGCCT 61.330 61.111 0.84 0.00 34.44 5.19
385 386 2.825836 CTTGTCATCGCTGGGGCC 60.826 66.667 0.00 0.00 34.44 5.80
386 387 2.045926 ACTTGTCATCGCTGGGGC 60.046 61.111 0.00 0.00 0.00 5.80
387 388 1.450312 GGACTTGTCATCGCTGGGG 60.450 63.158 3.08 0.00 0.00 4.96
388 389 0.036010 AAGGACTTGTCATCGCTGGG 60.036 55.000 3.08 0.00 0.00 4.45
389 390 1.813513 AAAGGACTTGTCATCGCTGG 58.186 50.000 3.08 0.00 0.00 4.85
390 391 2.666619 GCAAAAGGACTTGTCATCGCTG 60.667 50.000 3.08 0.00 0.00 5.18
391 392 1.537202 GCAAAAGGACTTGTCATCGCT 59.463 47.619 3.08 0.00 0.00 4.93
392 393 1.725931 CGCAAAAGGACTTGTCATCGC 60.726 52.381 3.08 0.00 0.00 4.58
393 394 1.531149 ACGCAAAAGGACTTGTCATCG 59.469 47.619 3.08 0.00 0.00 3.84
394 395 2.918131 GCACGCAAAAGGACTTGTCATC 60.918 50.000 3.08 0.00 0.00 2.92
395 396 1.001378 GCACGCAAAAGGACTTGTCAT 60.001 47.619 3.08 0.00 0.00 3.06
396 397 0.380378 GCACGCAAAAGGACTTGTCA 59.620 50.000 3.08 0.00 0.00 3.58
397 398 0.380378 TGCACGCAAAAGGACTTGTC 59.620 50.000 0.00 0.00 0.00 3.18
398 399 1.032014 ATGCACGCAAAAGGACTTGT 58.968 45.000 0.00 0.00 0.00 3.16
399 400 1.788308 CAATGCACGCAAAAGGACTTG 59.212 47.619 0.00 0.00 0.00 3.16
400 401 1.680735 TCAATGCACGCAAAAGGACTT 59.319 42.857 0.00 0.00 0.00 3.01
401 402 1.317613 TCAATGCACGCAAAAGGACT 58.682 45.000 0.00 0.00 0.00 3.85
402 403 2.053627 CTTCAATGCACGCAAAAGGAC 58.946 47.619 0.00 0.00 0.00 3.85
403 404 1.680735 ACTTCAATGCACGCAAAAGGA 59.319 42.857 13.38 1.02 0.00 3.36
404 405 2.138596 ACTTCAATGCACGCAAAAGG 57.861 45.000 13.38 0.37 0.00 3.11
405 406 3.842083 GCAAACTTCAATGCACGCAAAAG 60.842 43.478 0.00 3.47 42.12 2.27
406 407 2.030213 GCAAACTTCAATGCACGCAAAA 59.970 40.909 0.00 0.00 42.12 2.44
407 408 1.592081 GCAAACTTCAATGCACGCAAA 59.408 42.857 0.00 0.00 42.12 3.68
408 409 1.202394 AGCAAACTTCAATGCACGCAA 60.202 42.857 0.00 0.00 44.95 4.85
409 410 0.385029 AGCAAACTTCAATGCACGCA 59.615 45.000 0.00 0.00 44.95 5.24
410 411 1.490621 AAGCAAACTTCAATGCACGC 58.509 45.000 0.00 0.00 44.95 5.34
411 412 3.626977 TGTAAGCAAACTTCAATGCACG 58.373 40.909 0.00 0.00 44.95 5.34
412 413 5.922544 AGATTGTAAGCAAACTTCAATGCAC 59.077 36.000 0.00 0.00 44.95 4.57
413 414 6.088016 AGATTGTAAGCAAACTTCAATGCA 57.912 33.333 0.00 0.00 44.95 3.96
414 415 5.574443 GGAGATTGTAAGCAAACTTCAATGC 59.426 40.000 0.00 0.00 37.76 3.56
415 416 6.917533 AGGAGATTGTAAGCAAACTTCAATG 58.082 36.000 0.00 0.00 37.76 2.82
416 417 7.373493 CAAGGAGATTGTAAGCAAACTTCAAT 58.627 34.615 0.00 0.00 37.76 2.57
417 418 6.735694 GCAAGGAGATTGTAAGCAAACTTCAA 60.736 38.462 0.00 0.00 41.29 2.69
418 419 5.278463 GCAAGGAGATTGTAAGCAAACTTCA 60.278 40.000 0.00 0.00 41.29 3.02
419 420 5.157067 GCAAGGAGATTGTAAGCAAACTTC 58.843 41.667 0.00 0.00 41.29 3.01
420 421 4.584325 TGCAAGGAGATTGTAAGCAAACTT 59.416 37.500 0.00 0.00 41.29 2.66
421 422 4.144297 TGCAAGGAGATTGTAAGCAAACT 58.856 39.130 0.00 0.00 41.29 2.66
422 423 4.503741 TGCAAGGAGATTGTAAGCAAAC 57.496 40.909 0.00 0.00 41.29 2.93
423 424 5.713025 GATTGCAAGGAGATTGTAAGCAAA 58.287 37.500 4.94 0.00 45.64 3.68
424 425 5.314923 GATTGCAAGGAGATTGTAAGCAA 57.685 39.130 4.94 0.00 45.64 3.91
425 426 4.970662 GATTGCAAGGAGATTGTAAGCA 57.029 40.909 4.94 0.00 45.64 3.91
426 427 3.696051 TGGATTGCAAGGAGATTGTAAGC 59.304 43.478 4.94 0.00 45.07 3.09
427 428 5.826737 AGATGGATTGCAAGGAGATTGTAAG 59.173 40.000 4.94 0.00 45.07 2.34
428 429 5.759059 AGATGGATTGCAAGGAGATTGTAA 58.241 37.500 4.94 0.00 45.78 2.41
429 430 5.371526 GAGATGGATTGCAAGGAGATTGTA 58.628 41.667 4.94 0.00 41.29 2.41
430 431 4.205587 GAGATGGATTGCAAGGAGATTGT 58.794 43.478 4.94 0.00 41.29 2.71
431 432 3.250280 CGAGATGGATTGCAAGGAGATTG 59.750 47.826 4.94 0.00 42.20 2.67
432 433 3.135348 TCGAGATGGATTGCAAGGAGATT 59.865 43.478 4.94 0.00 0.00 2.40
433 434 2.702478 TCGAGATGGATTGCAAGGAGAT 59.298 45.455 4.94 0.00 0.00 2.75
434 435 2.110578 TCGAGATGGATTGCAAGGAGA 58.889 47.619 4.94 0.00 0.00 3.71
435 436 2.609427 TCGAGATGGATTGCAAGGAG 57.391 50.000 4.94 0.00 0.00 3.69
436 437 4.040829 ACATATCGAGATGGATTGCAAGGA 59.959 41.667 22.95 0.00 0.00 3.36
437 438 4.321718 ACATATCGAGATGGATTGCAAGG 58.678 43.478 22.95 0.00 0.00 3.61
438 439 5.579904 CCTACATATCGAGATGGATTGCAAG 59.420 44.000 22.95 2.72 0.00 4.01
439 440 5.012046 ACCTACATATCGAGATGGATTGCAA 59.988 40.000 22.95 0.00 0.00 4.08
440 441 4.528206 ACCTACATATCGAGATGGATTGCA 59.472 41.667 22.95 1.70 0.00 4.08
441 442 5.078411 ACCTACATATCGAGATGGATTGC 57.922 43.478 22.95 0.00 0.00 3.56
442 443 6.691508 TCAACCTACATATCGAGATGGATTG 58.308 40.000 22.95 16.48 0.00 2.67
443 444 6.918067 TCAACCTACATATCGAGATGGATT 57.082 37.500 22.95 5.19 0.00 3.01
444 445 6.665248 TCATCAACCTACATATCGAGATGGAT 59.335 38.462 22.95 12.04 34.09 3.41
445 446 6.010219 TCATCAACCTACATATCGAGATGGA 58.990 40.000 22.95 14.74 34.09 3.41
446 447 6.272822 TCATCAACCTACATATCGAGATGG 57.727 41.667 22.95 8.97 34.09 3.51
447 448 7.318893 ACATCATCAACCTACATATCGAGATG 58.681 38.462 18.14 18.14 35.41 2.90
448 449 7.473735 ACATCATCAACCTACATATCGAGAT 57.526 36.000 0.00 0.00 0.00 2.75
449 450 6.901081 ACATCATCAACCTACATATCGAGA 57.099 37.500 0.00 0.00 0.00 4.04
450 451 7.147976 TGAACATCATCAACCTACATATCGAG 58.852 38.462 0.00 0.00 0.00 4.04
451 452 7.049799 TGAACATCATCAACCTACATATCGA 57.950 36.000 0.00 0.00 0.00 3.59
452 453 6.128715 GCTGAACATCATCAACCTACATATCG 60.129 42.308 0.00 0.00 0.00 2.92
453 454 6.933521 AGCTGAACATCATCAACCTACATATC 59.066 38.462 0.00 0.00 0.00 1.63
454 455 6.835174 AGCTGAACATCATCAACCTACATAT 58.165 36.000 0.00 0.00 0.00 1.78
455 456 6.239217 AGCTGAACATCATCAACCTACATA 57.761 37.500 0.00 0.00 0.00 2.29
456 457 5.108187 AGCTGAACATCATCAACCTACAT 57.892 39.130 0.00 0.00 0.00 2.29
457 458 4.507710 GAGCTGAACATCATCAACCTACA 58.492 43.478 0.00 0.00 0.00 2.74
458 459 3.553511 CGAGCTGAACATCATCAACCTAC 59.446 47.826 0.00 0.00 0.00 3.18
459 460 3.195610 ACGAGCTGAACATCATCAACCTA 59.804 43.478 0.00 0.00 0.00 3.08
460 461 2.027745 ACGAGCTGAACATCATCAACCT 60.028 45.455 0.00 0.00 0.00 3.50
461 462 2.349886 GACGAGCTGAACATCATCAACC 59.650 50.000 0.00 0.00 0.00 3.77
462 463 2.995939 TGACGAGCTGAACATCATCAAC 59.004 45.455 0.00 0.00 0.00 3.18
463 464 3.256558 CTGACGAGCTGAACATCATCAA 58.743 45.455 0.00 0.00 0.00 2.57
464 465 2.884827 CTGACGAGCTGAACATCATCA 58.115 47.619 0.00 0.00 0.00 3.07
465 466 1.592081 GCTGACGAGCTGAACATCATC 59.408 52.381 0.00 0.00 42.52 2.92
466 467 1.649664 GCTGACGAGCTGAACATCAT 58.350 50.000 0.00 0.00 42.52 2.45
467 468 0.390340 GGCTGACGAGCTGAACATCA 60.390 55.000 0.00 0.00 45.44 3.07
468 469 0.390340 TGGCTGACGAGCTGAACATC 60.390 55.000 0.00 0.00 45.44 3.06
469 470 0.671781 GTGGCTGACGAGCTGAACAT 60.672 55.000 0.00 0.00 45.44 2.71
470 471 1.300931 GTGGCTGACGAGCTGAACA 60.301 57.895 0.00 0.00 45.44 3.18
471 472 2.029844 GGTGGCTGACGAGCTGAAC 61.030 63.158 0.00 0.00 45.44 3.18
472 473 2.343758 GGTGGCTGACGAGCTGAA 59.656 61.111 0.00 0.00 45.44 3.02
473 474 3.695606 GGGTGGCTGACGAGCTGA 61.696 66.667 0.00 0.00 45.44 4.26
489 490 4.680237 TGCAGAAGGACCGCACGG 62.680 66.667 7.71 7.71 42.03 4.94
490 491 3.414700 GTGCAGAAGGACCGCACG 61.415 66.667 6.49 0.00 45.69 5.34
494 495 4.680237 TGGCGTGCAGAAGGACCG 62.680 66.667 0.00 0.00 31.56 4.79
495 496 2.731691 TTCTGGCGTGCAGAAGGACC 62.732 60.000 0.00 0.00 34.16 4.46
496 497 1.301716 TTCTGGCGTGCAGAAGGAC 60.302 57.895 0.00 0.00 34.16 3.85
497 498 3.147132 TTCTGGCGTGCAGAAGGA 58.853 55.556 0.00 0.00 34.16 3.36
500 501 0.179059 TGAACTTCTGGCGTGCAGAA 60.179 50.000 0.00 0.00 37.18 3.02
501 502 0.601046 CTGAACTTCTGGCGTGCAGA 60.601 55.000 0.00 0.00 39.89 4.26
502 503 0.882042 ACTGAACTTCTGGCGTGCAG 60.882 55.000 0.00 0.00 42.58 4.41
503 504 0.880278 GACTGAACTTCTGGCGTGCA 60.880 55.000 0.00 0.00 0.00 4.57
504 505 1.569479 GGACTGAACTTCTGGCGTGC 61.569 60.000 1.25 0.00 0.00 5.34
505 506 0.034059 AGGACTGAACTTCTGGCGTG 59.966 55.000 0.00 0.00 0.00 5.34
506 507 0.759346 AAGGACTGAACTTCTGGCGT 59.241 50.000 1.25 0.00 0.00 5.68
507 508 1.151668 CAAGGACTGAACTTCTGGCG 58.848 55.000 1.25 0.00 0.00 5.69
508 509 0.877743 GCAAGGACTGAACTTCTGGC 59.122 55.000 1.25 0.00 0.00 4.85
509 510 1.528129 GGCAAGGACTGAACTTCTGG 58.472 55.000 1.25 0.00 0.00 3.86
510 511 1.151668 CGGCAAGGACTGAACTTCTG 58.848 55.000 0.00 0.00 0.00 3.02
511 512 0.035458 CCGGCAAGGACTGAACTTCT 59.965 55.000 0.00 0.00 45.00 2.85
512 513 0.955919 CCCGGCAAGGACTGAACTTC 60.956 60.000 0.00 0.00 45.00 3.01
513 514 1.073199 CCCGGCAAGGACTGAACTT 59.927 57.895 0.00 0.00 45.00 2.66
514 515 2.113243 GACCCGGCAAGGACTGAACT 62.113 60.000 0.00 0.00 45.00 3.01
515 516 1.671379 GACCCGGCAAGGACTGAAC 60.671 63.158 0.00 0.00 45.00 3.18
516 517 2.144078 TGACCCGGCAAGGACTGAA 61.144 57.895 0.00 0.00 45.00 3.02
517 518 2.525629 TGACCCGGCAAGGACTGA 60.526 61.111 0.00 0.00 45.00 3.41
518 519 2.358737 GTGACCCGGCAAGGACTG 60.359 66.667 0.00 0.00 45.00 3.51
519 520 2.113243 GAAGTGACCCGGCAAGGACT 62.113 60.000 0.00 0.00 45.00 3.85
520 521 1.671379 GAAGTGACCCGGCAAGGAC 60.671 63.158 0.00 0.00 45.00 3.85
521 522 2.747686 GAAGTGACCCGGCAAGGA 59.252 61.111 0.00 0.00 45.00 3.36
522 523 1.550130 TAGGAAGTGACCCGGCAAGG 61.550 60.000 0.00 0.00 40.63 3.61
523 524 0.108138 CTAGGAAGTGACCCGGCAAG 60.108 60.000 0.00 0.00 0.00 4.01
524 525 0.834687 ACTAGGAAGTGACCCGGCAA 60.835 55.000 0.00 0.00 33.57 4.52
525 526 1.229082 ACTAGGAAGTGACCCGGCA 60.229 57.895 0.00 0.00 33.57 5.69
526 527 3.709567 ACTAGGAAGTGACCCGGC 58.290 61.111 0.00 0.00 33.57 6.13
537 538 1.204146 GCCATGTCCTTCCACTAGGA 58.796 55.000 0.00 0.00 43.93 2.94
538 539 0.911769 TGCCATGTCCTTCCACTAGG 59.088 55.000 0.00 0.00 36.59 3.02
539 540 2.237143 TCTTGCCATGTCCTTCCACTAG 59.763 50.000 0.00 0.00 0.00 2.57
540 541 2.237143 CTCTTGCCATGTCCTTCCACTA 59.763 50.000 0.00 0.00 0.00 2.74
541 542 1.004044 CTCTTGCCATGTCCTTCCACT 59.996 52.381 0.00 0.00 0.00 4.00
542 543 1.457346 CTCTTGCCATGTCCTTCCAC 58.543 55.000 0.00 0.00 0.00 4.02
543 544 0.322816 GCTCTTGCCATGTCCTTCCA 60.323 55.000 0.00 0.00 0.00 3.53
544 545 2.486796 GCTCTTGCCATGTCCTTCC 58.513 57.895 0.00 0.00 0.00 3.46
555 556 1.583477 GCAGACCAAAGGCTCTTGC 59.417 57.895 0.00 0.00 38.76 4.01
556 557 0.886490 ACGCAGACCAAAGGCTCTTG 60.886 55.000 0.00 0.00 0.00 3.02
557 558 0.886490 CACGCAGACCAAAGGCTCTT 60.886 55.000 0.00 0.00 0.00 2.85
558 559 1.302033 CACGCAGACCAAAGGCTCT 60.302 57.895 0.00 0.00 0.00 4.09
559 560 2.970974 GCACGCAGACCAAAGGCTC 61.971 63.158 0.00 0.00 0.00 4.70
560 561 2.980233 GCACGCAGACCAAAGGCT 60.980 61.111 0.00 0.00 0.00 4.58
561 562 3.259425 CTGCACGCAGACCAAAGGC 62.259 63.158 13.87 0.00 46.30 4.35
562 563 1.597854 TCTGCACGCAGACCAAAGG 60.598 57.895 17.54 0.00 46.80 3.11
563 564 4.047834 TCTGCACGCAGACCAAAG 57.952 55.556 17.54 0.00 46.80 2.77
571 572 3.245518 ACATTAGTATGTCTGCACGCA 57.754 42.857 0.00 0.00 41.07 5.24
573 574 6.408858 AAGAAACATTAGTATGTCTGCACG 57.591 37.500 0.00 0.00 44.14 5.34
579 580 9.517609 ACGACAGATAAGAAACATTAGTATGTC 57.482 33.333 0.00 0.00 44.14 3.06
584 585 9.302345 CACATACGACAGATAAGAAACATTAGT 57.698 33.333 0.00 0.00 0.00 2.24
587 588 8.948631 ATCACATACGACAGATAAGAAACATT 57.051 30.769 0.00 0.00 0.00 2.71
597 598 7.157347 AGCATGATAAATCACATACGACAGAT 58.843 34.615 0.00 0.00 40.03 2.90
706 720 0.237235 GACTGATTTTCCACGCGCAA 59.763 50.000 5.73 0.00 0.00 4.85
749 763 4.858692 GCAAGCGAACATGTGAATAAACAT 59.141 37.500 0.00 0.00 41.50 2.71
850 870 2.433664 CGTCTTTAGCGCCCCGTT 60.434 61.111 2.29 0.00 0.00 4.44
853 873 3.777910 TCCCGTCTTTAGCGCCCC 61.778 66.667 2.29 0.00 0.00 5.80
890 912 3.931190 AACGGGAATTGGGGGACGC 62.931 63.158 0.00 0.00 43.69 5.19
891 913 1.747745 GAACGGGAATTGGGGGACG 60.748 63.158 0.00 0.00 0.00 4.79
892 914 1.379443 GGAACGGGAATTGGGGGAC 60.379 63.158 0.00 0.00 0.00 4.46
936 958 3.767630 AATATCCGGTGGCGGTGGC 62.768 63.158 0.00 0.00 38.90 5.01
937 959 1.597027 GAATATCCGGTGGCGGTGG 60.597 63.158 0.00 0.00 0.00 4.61
938 960 1.597027 GGAATATCCGGTGGCGGTG 60.597 63.158 0.00 0.00 0.00 4.94
939 961 2.067605 TGGAATATCCGGTGGCGGT 61.068 57.895 0.00 0.00 40.17 5.68
940 962 1.597027 GTGGAATATCCGGTGGCGG 60.597 63.158 0.00 0.00 40.17 6.13
1107 1130 2.124151 CCCAGGGAAAGGATGCGG 60.124 66.667 0.00 0.00 0.00 5.69
1155 1178 1.470112 GCGAAGAGTAGGAAGAGCACC 60.470 57.143 0.00 0.00 0.00 5.01
1258 1281 4.361971 AGTGGAGGAGTCGGGCGA 62.362 66.667 0.00 0.00 0.00 5.54
1374 1409 4.637489 CAGATCCGCGGCGAGGAG 62.637 72.222 34.09 19.26 41.66 3.69
1569 1604 0.874390 GCGGTGCAACTTCTTGATGA 59.126 50.000 0.00 0.00 36.74 2.92
1609 1644 3.599285 TTTACAGCCCTGGCGGTCG 62.599 63.158 17.22 3.07 45.69 4.79
1610 1645 1.745489 CTTTACAGCCCTGGCGGTC 60.745 63.158 17.22 0.00 45.69 4.79
1637 1672 0.319555 TTCTTCGAACAGCTGACGGG 60.320 55.000 23.35 18.82 0.00 5.28
1669 1704 1.532090 CGGCTACGACTACAGAGCAAG 60.532 57.143 0.00 0.00 44.60 4.01
1688 1723 2.386661 AGATCCACACAAAGCCTACG 57.613 50.000 0.00 0.00 0.00 3.51
1871 1912 3.897239 TCATTCGTTATTGCTCCCCATT 58.103 40.909 0.00 0.00 0.00 3.16
1918 1959 4.990426 AGCAAATACTTTGACATTGCCAAC 59.010 37.500 5.74 0.00 45.62 3.77
1949 1990 6.761312 TCGATCAAACTTGTTTCCTAGGTTA 58.239 36.000 9.08 0.00 0.00 2.85
1972 2013 6.515272 TCACATCAAAGCTTATTCCCTTTC 57.485 37.500 0.00 0.00 0.00 2.62
2096 3536 6.532657 GGCTTACAACAAATTGATTGGATCAG 59.467 38.462 0.00 0.00 43.66 2.90
2108 3548 5.594317 AGAACAGAACAGGCTTACAACAAAT 59.406 36.000 0.00 0.00 0.00 2.32
2212 3652 8.902806 CCAAGAAAAGCTATCCATACATAACAA 58.097 33.333 0.00 0.00 0.00 2.83
2213 3653 7.013274 GCCAAGAAAAGCTATCCATACATAACA 59.987 37.037 0.00 0.00 0.00 2.41
2214 3654 7.013274 TGCCAAGAAAAGCTATCCATACATAAC 59.987 37.037 0.00 0.00 0.00 1.89
2220 3660 3.885297 GCTGCCAAGAAAAGCTATCCATA 59.115 43.478 0.00 0.00 34.05 2.74
2370 3817 1.270550 GGTGGTCATGGCAAGTTCTTG 59.729 52.381 0.00 8.04 0.00 3.02
2460 3918 4.528206 TGATGTCAAGCTCTCAAGTTCCTA 59.472 41.667 0.00 0.00 0.00 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.