>input_sequence_76685
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--------------------------------------------------------------ATGGCTCCGCCCGCCGCC
GGCAGGCCCTCGGCCTCCGCCGCGCCGGAGCCTCCCCTGCGGGAGGCCGCCAAGCGCCGGCGCGCCCCCGCGTGCGCCGG
TGCCGGGGCCCGCATCCTTTCCCTGGGCGTGCGGGGCGCCGTGATGGTCGCCGCGCTGGTGCTCTTCCTACTCTTCGCCG
CCGCCGCGGTCATCCTCATGCTCGCGCTCCTCGTCGCCGCGCGCGGCTTCCGCCAGCAGGGCCGCCGCCGGCACCGCGCC
TCGCCCGACTCCTCCACTCCGCCGCCGCCCCCCGCCGTCGGCCTCCCGTCCGCCAAAATCCGCCTCCTGCCCAGCTTCGT
GCCCTGCCCGTGCGACGGCGGCGGCG------------ACGGCTCCTCCTCCTCGCCGCGGATCTGCCCCGTCTGCCTCG
ACGCTGCGCGCGCCGGGGAGCGGTGGCGCGCGCTGCCCGCCTGCGGCCACGCGTTCCACGCGGCCTGCGTCGACCGGTGG
CTCCTCTTGTCGCCCGGGTGCCCCGTCTGCCGCGCCACGGTGTCCGTCCCCGTCAGCTGA--------------------
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>chr6B_1_TraesCS6B01G178500
GTTTAACTACATCCCTAACCACACCTCATCTGCTTCCTCTACGACGGAGCACTACCTCATCTTCACCACCATAAATGACG
ACACTACTGCGCCGAAGATTTCGGCAAACTGGTACTTACTCCTTCTGTTCTAAACCTATCTCTCTCTTTTGTTATGTATT
CTTTTTTAAATTCAACCACACCTTTATTTAATCATCCCACACCGGGATCTCGTCTGAGATAGTCTTTAAAATGAAATCTG
GGGGCACATGCAGCCAACCTTGTATAATTTAGATGCAACTGCTTCCCTAGCTAATAAGTGGGCAACTTTATTAGCATCAC
GCCTAACCCACGAAACTTTCCAACTCCCCCTCAAGGCCAATAGACGCTTGACCTCCTCCACAATAGGCCCCAGCGATGAC
AAGTCCTTTTGCGTGCATTGAAGTTTGCTTACAATCTCCTTGCAATCCATCTCGATATGTAGGTTGATGATGTTCAGCTC
GTCAGCCACCCGTGCGGTCCTTCTGCACGCCAGAAGTTCAGTCCTTGCCGGGTCACTTCCTAGTGGAAGGACATGGCAAG
AGCCTTTGGTCTGCGTGCAGACATACTAATGTTTCTTATCTGTCGTATGTGATTTATCATGCTAGGAAATTTGCCATGAT
GATAATCTAGATTAAGCTTGACCCAAAACTGTTTATA-------------ATAACCTAACATTCTGTTCGACTCATGGTT
TGCGCGTGGAAAATCAGTCGCCTGCGCTCGGCGGGCCGTATTATGTTTATTCACATGTTCGCTTGCCCAGTTTTGCCGTT
TGGGCATGTGAA------ACAGAAGAAGCACCGTGCGCGTGCGCGTACAAAAGCCACCAGAACGCGCCCAACGG--GGCG
CTAAAGACGGGACCGTGCCGTGCCGTGCCGTGCGTCCCCCAATTCCCGTTCCCAAAAATATCCTCCCCACCGCCACCGCC
ACCGCCACCGGATATTCCACCCCGTCCCGGGAGCCAAGCCGAGGCAAAGG-CGCCGCAGCGAATGGCTCCGCCCGCCGCC
GGCAGGCCCTCGGCCTCCGCCGCGCCGGAGCCTCCCCTGCGGGAGGCCGCCAAGCGCCGGCGCGCCCCCGCGTGCGCCGG
TGCCGGGGCCCGCATCCTTTCCCTGGGCGTGCGGGGCGCCGTGATGGTCGCCGCGCTGGTGCTCTTCCTACTCTTCGCCG
CCGCCGCGGTCATCCTCATGCTCGCGCTCCTCGTCGCCGCGCGCGGCTTCCGCCAGCAGGGCCGCCGCCGGCACCGCGCC
TCGCCCGACTCCTCCACTCCGCCGCCGCCCCCCGCCGTCGGCCTCCCGTCCGCCAAAATCCGCCTCCTGCCCAGCTTCGT
GCCCTGCCCGTGCGACGGCGGCGGCG------------ACGGCTCCTCCTCCTCGCCGCGGATCTGCCCCGTCTGCCTCG
ACGCTGCGCGCGCCGGGGAGCGGTGGCGCGCGCTGCCCGCCTGCGGCCACGCGTTCCACGCGGCCTGCGTCGACCGGTGG
CTCCTCTTGTCGCCCGGGTGCCCCGTCTGCCGCGCCACGGTGTCCGTCCCCGTCAGCTGATCGCGAGCTCCAGGCACGGG
ACATCATCAAGAAGTTGCACCGCGCCCCCGTGGTGGCCGCCCGCGACCGCCAGGGCTGTAAAGGTTCGGTTCCCGTCAGC
TGTTCGAAGAAAAGCCTCCCCGCCTTGCTCTGTAGTCGTAGCC----GTAGGCTTTGTGTGGATCTTTCTGCTGTTGTAA
AGCGAGAGGCAGGGAGACGATGCATAAAACAAGTTTCTCCTTAAGGAGAACCTTGCAATGTCAACTACTTTATCTATTTT
CATCTCAGTAT-TGTGTAGTTCATCCAAGTTGCTCGTGGTGCCAATTGTGAATTGTGAT-CGTATGATAGTAATGGGGAG
CAATAACGAATGAATCGTCAATGCTCATATGCATCACAGTTGGCAATGTCAAAGTATTTGCTTAACTACTAACCTAGGAA
ACAAGTTTGATCGAAAGGGAATAAGCTTTGATGTGATGT-----GATGCTCTTGTGGGACAATTATAGGATAGTG-----
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---------------------------ATGTCAAGAGCTCCAGATGAAAATGAGTTTCTAAAACATGTGCCCAACTC--A
ACCTAGGAAACAAGTCTGATCCAATCAATTTGTTGTAAGCCTGTTCTGTTCTTATCAGTGTAGTTCTAGGCATTAAAGAG
CAACTCTTGTGGTAGAATTTGCTTATGAGGATAATGTGGCGTGTGATTTTTTTGTTATGTATGGATAGC--TTTTCTTGG
CAGCAGAGGTATACGCTTTGCCCCTTCTATAATCACGAAACTCACTTATTCATGGCTTGAACAATAGTAGTACAAATTAT
TTCTGAATTCTCGATACAGAAGAACTTGTTTCCCTCTCCAAAAAGAG-----AACACAAGAACTTGCCATGACCACCTTT
ATGAGCCTTCATTGATTCTGGTTGCTTTGTTATTACGGACCAATAAATAGAT-----------TTGAAAGCAGATATTAG
GAACTTGAGAGCTTGACATCATTTACAGTTTTACACTCAGCTATGCATCTTGTTCTATATGCAACCATGTATCTTGTTCT
AAA
>chr6D_565
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----TTTTGTCCGTGTGCAAACATGCTGATGTTTCTTGTCTGTCGTATGTGATTTATCATGCTAGTAAATTTGCGATGAT
GATAATCTAGATTAAGCTTGACCCAAAACTGTTTATA-------------ATAACCTAACATTCTGTTCGACTCATGGTC
TGCGCGTGGA--ATCAGTCGGCTGCGCTCGGCCGTATTCCTTCTTTTTATTCACATGTTCGCTTGCCCAGTTTTGCCGTG
TGGGCATGTGAA------ACAGAAGAAGCACCGTGCGCGTGCGCGTACAAAAGCCACCAGAACGCCC---AACGGTGGCG
CTAAAAACGGGACCGTGCCGTGCCGTGCC-----T-CCCCAATTCCCGTTCCCAAAAATATCCTCCCCACCGCCAC----
--CGCCACCGGATATTCCACCCCGTCCCGGAAGCCAAGCCGAGGCAAAGG-CGCCGCAGCGAATGGCTCCGCCTGCCGCC
GGCAGGCCCTCGGCCTCCGCCGCGCCGGAGCCTCCCCTGCGGGAGGCCGCCAAGCGCCGACGCGCCCCCGCGTGCGCCGG
CGCTTGGGCGCGCATCCTCTCCTTGGGCGTGCGGGGCGCCGTGATGGTCGCCGCGCTCGTGCTCTTCCTACTCTTCGCCG
CCGCCGCGGTCATCCTCATGCTTGCGCTCCTCGTCGCCGCGCGCGCCTTCCGCCAGCAGGGCCGCCGCCGGCACCGCGCC
CCGCCCGACTCCTCCGCTCCGCCGCCGCCCCCCGCCGTCGGCCTCCCGTCCGCCAAAATCCGCCTCCTGCCCAGCTTCGT
GCCCTGCCCGTGCGATGGCGGCGGCGGCGGCGACGGCGACCCT------TCCTCGCCGCGGATCTGCCCCGTCTGCCTCG
ACGCTGCACGCGCCGGGGAGCGGTGGCGCGCGCTGCCCGCCTGTGGCCACGCGTTCCACGCCGCCTGCGTCGACCGGTGG
CTCCTCTTGTCGCCGGGGTGCCCCGTCTGCCGCGCCACGGTGTCCGTCCCCGTCAGCTGATCGCGAGCTACCGGCATGGG
ACGGCATCAAGAAGTTGCGCCG-------------------------CGCCAGGGCTGTAAAGGTTCGGTTTCCGTCAGC
TGTTCGACGAAAAGCCTCCCCGCTTTGCTCTGTAGTCTAGCCT--------GCTTTGTGTGGATCTTTCTGCTGTTGTAA
AGCGAGAGGCAGGGAGACGATGCATAAAACAAGTTTCTCCTTAAGGAGAACTTTGCAATGTCAACTTCTTTATCTATTTT
CATCTCAGTAT-TGTGTAGTTCATCCAAGTTGCTCGTGGTGCCAATTGTTAATTGTGATGCGTACGATAGT-ATGGGGAG
TAGTAACGAATGAATCGTCAATGCTCATATGCATCACAATTGGCAATGTCA-AGTATTTGCTTAACTACAAACCTAGGAA
ACAAGTTTGATCCAAAGGGAATAAGCTTTGATGTGATGT-----GATGCTCTTGTGGGACAATTATAGGATAGTG-----
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---------------------------ATGTCAAGAGCTCCAGATGAAAATGAGTTTCTAAAACATGGGCCCAACTCCAA
ACCTAGGAAACAAGTTTGATCCAATCAGTTTGTTGTAAGCCTGTTCTGTTCTTATCAGTGTAGTTCTGGGCATTAAAGAG
CAACTCTTGTGGTAGAATTTGCTTATGAGGATAATGTGGCGTGTGATTTATC--TTATGCATGGATAGC--TTTTCTTGG
CAGCAGAGGTATACGCTTTGCCCCTTCTATAATCACGAAACTCACTAATTCATGGCTTGAACAATAATAGTACAAATTAT
TTCTGAATTCTCGATACGGAAGAACTTGTTTCCCTCTCCAAAAAGAG-----AATAGAAG-ACTTGCCATGACCACCTTT
ATGAGCCTTCATTGATTCTTGTTGCTTTGTTATTACGGACCAATAAATAGAT-----------TTGAAAGTAGATATCAG
GAACTTGAGAGCTTGACATCATTTACAGTCTTACACTCAGCCATGCATCTTGTTCTATATGCAACCATGCATCTTGTTCT
AAA
>chr6A_641
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GATAATCTAGATTAAGCTTGACCCAAAACTGTTTATATTATATATAGTAAATAACCTAACATTCTATTCGACTCATGGTC
TGCGCGTGGA--ATCAGTCGGCTGCGCTCGGCGGGCCGTATTCTGTTTATTCACATGTTCGCTTGCCCAGTTTTGCCGTT
TGGGCATGTGAAAGTGAAACAGAAGAAGCACCGTGCGCGTGCGCGTACAAAAGCCACCAGAGCGCGGCCGAACGGTGGCG
CTAAAAACGGGTCCGTGCCGTGCCGTGCC-----TCCCCCAATTCCCGTTCCCAAAAATATCCTCCCCACCGCCAC----
--CGCCACCGGATATTCCACCCCGCCCCGGGAGCCAAGCCGAGCCAAAGGCCGCCGCAGCGAATGGCTCCGCCCGCCGCC
GGCAGGCCCTCGGCCTCCGCCGCGCCGGAGCCTCCCCTGCGGGAGGCCGCCAAGCGCCGACGCGCGCCCGCGTGCGCCGG
CGCCGGGGCGCGCATCGTCTCCTTGGGCGTGCGGGGCGCCGTGATGGTCGCCGCGCTCGTGCTCTTCCTCCTCTTCGCCG
CCGCCGCGGTCATCCTCATGCTCGCGCTCCTCGTCGCCGCGCGCGCCTTCCGCCAGCAGGGCCGCCGTCGGCACCGCGCC
CGGCCCGACTCCTCCGCCCCGCCGCCGCCCCCCGCCGTCGGCCTCCCGTCCGCCAAAATCCGCCTCCTGCCCAGCTTCGT
GCCCTGCCCGTGCGACGGCGGCGGCG------------ACCCT------TCCTCGCCGCGGATCTGCCCCGTCTGCCTCG
ACGCCGCGCGCGCCGGGGAGCGGTGGCGCGCGCTGCCCGCCTGCGGCCACGCGTTCCACGCGGCCTGCGTCGACCGGTGG
CTCCTCTTGTCGCCGGGGTGCCCCGTCTGCCGCGCCACGGTGGCCGTCCCCGTCAGCTGATCGTGAGCTCCAGGCACGGG
ACAGCATCAAGAAGTTGCA-------------------------------CAGGGCTGTAAAGGTTCGGTT-CCGTCAGC
CGTTCGACGAAAAGCCTCCCC------CTCTGTAGTCGTAGCTGGTAGTAGGCTTTGTGTGGATCTTTCTGCTGTTGTAA
AGCGAGAGGCAGGGAGACGATGCATAAAACAAGTTTCTCCTTAAGGAGAACTTTGCAATGTCAACTTCTTTATCTATTTT
CATCTCAGTATTTGTGTAGTTCATCCAAGTTGCTCCTGGTGCCAATTGTGAATTGCGATGCGTATGATAGT-ATGGGGAG
TAATAACGAATGAATCGTCAATGCTCATATGCATCACAATTGGCAATGTCA-AGTATTTGCTTAACTACAAACCTAGGAA
ACAAGTTTGATCCAAAGGGAATAAGCTTTGATGTGATGTCATGTGATGCTCTTGTAGGACAATTATAGGATAGTGATGTC
CAGGGCCGGTCCTGAGTTTTTGGGGGCCCGGGGCGAACCTAAAACTCGGGGCCCTTAATATACACATCATAGTAACATCA
ATGAATATACTTATATATAGCGTTACAAATAACATTTAACATTTAAATGCATCCAAAATCAGTATGATTATCCAGTAATT
TATACTCTGAAATTACCTTAAAAAAATCTTCTAACACTCCTTGATGCAAAGTCACTTATGATGGGGTCGATGTCAATCTC
ATTCATTAATTTCTTCTCCATGCATAATGTAGCCAAACCATTTAATCTCTCTTGAGTTATTGTTGATCTCAAATAATTCT
TCAATTATTTCAACTTCGAAAAGCTTTTTTTGGCCGATGTGGCCGTCACAGTGACAGTAAATAAGATGCAATAAGCAGAT
ATATTGGTATAACTTCGAAAAGCTTCTTTCGGCCGATGAGTACTTCTCTCATATGCCCGAAAATTTCATCAACAGTAGCA
AATTGTGCCTATGCATCTGATGAATTACCGAGCAACTTACTTTGTTCTCGCTGATGTTGGTCTCGACATTTTCTTCTTCC
GAATTCCCATTAGTCTGTTGCTCTTCCCGAATGGCAACGATCACCTACTAGTCATCTGGGTTTATCAAAGCAGTGGAAGC
ACCAATATCACTCTTCTTGAAAAAATTGTGAATATGTGTGCTCTCTGATTGTATCAATTTATCCACTTCCTTCTTCCTTT
TTCTTTTATGGCTACCAGATGAATTTGTCCAGTTGCTAGACGACATGATTAACACACACAATGCTGAAAACAAAACAGTT
TGTTGCATCAATGATCAATCGTTGAACGGTGCCGGCTATGCAACCATAGAATTTATTGTATCAACATTATATGAATATAT
ACCTCGGTTCCTGAATCCTGACGATCGAACTTCAGTGCGTTTGCCTATAAAGCACGGCAGCAGTGTAGCGCTTGGAGTCT
GCAGAGGATTGAGAGAAGATCAACTGAGCAAAGGCCAAAGGGGCGTGATGATGGATCCCCAGAATTGAAATCTGCCGCGT
ACATAACCGGATTATTAAGGAAATTACCAGGGGACAACTGAGAGGCTGGAATACATGTACGGCATCGAGCGTCGGCGGCC
TAGGGCTGCGTCTGCGTGATGGAACAGAATAGGAAGGGAACCGTCAGAATCGGATCAATCGCTGATCCTTTTTTCACGCG
ATCCCTCTCCTTTTTTATGTGAACGAACCGCTGGCTGCCTCGCTCGCTAACTTTTCCGAGGAAACAAATCGATCGATCGA
CCTGCTGCTCCCTACGCGCGTCTGCAGCATGGGCCATAGGGGCCCCCTGAATTTTGGGGGCCCGGGGCGGCCGCCCCCCC
TCCCCCTCCCCAGGGCCGGCCCTGGTGATGTCAAGAGCTCCAGATGAAAATGAGTTTCTTAAACATGTGCCCAACTCCAA
ACCTAGGAAACAAGTTTGATCCAATCAGTTTGTTGTAAGCCTGTTCTGTTCTTATCAGTGTAGTTCTAAGCATTAAAGAG
CAACTCTTGTGGTAGAATTTGCTTATCAGGATAATGTGGCGTGCGATTTATC--TTACGCATGGGTAGCTTTTTTCTTGG
CAGCAGAGGTAT-----------CTTCCATAATCACCAAAGTCACTGCTTCATGGCTTGAAC----ATAATACAAGTTAT
TTCTGAATTCTTGATACAGAA---CTTTTTTCCCTCTCTCCAAAAACAAACAAACAGAAGAACTTGTCATAACCACCTTT
ATGAGCCTTCATTGATTCTGGTTGCTTTGTTGTTATGGATGAATAAATTGATTTTTTTCTTACTTGAAAGCAGATATCAG
GAACTTGAGAGCGACATCA----------TTTACACTCACCTATGCATCTTGTTCTATATGCAACCATG-----------
---
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS---S---S-S-----S----S--S---------S---------------------------S--------S-----
-------------------------------------------------------------------------------S
----------SS--------S---------------------S-------------------------------------
---------------------------------------------------------------------S-SS-------
-----S-----------------------SSSSS------------------------------------------SSSS
SS------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
S--------S--------S---S----------------------------------S----------------------
---------------------------------------------S----------------------------------
S--------------S----------------------------------------------------------------
----------------------------------------SSSSSSSSS-------------------------------
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--------------S-----------------------------------------------------------------
---S------------------SSSSSSSSSSSSSSSSSSSSSSSSS------------------------S--------
-------S---------------S------------------S-------------------------------------
---------------------------------------------------S--------------S-------------
-----------------------------------------------------------------------S--------
S-------------------------------------S------------S-----------------S----------
------------S-------------------------------------------------------------------
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---------------S-----------S----------------------------------------------------
-------------------------------------------------S-SSS-----S--------------------
----------------------------------------------S-------------------S-------------
--------------------------------------------------------S-----------------------
-----------------------------------------------------------------------------S--
---------------------------------------------------------------------S----------
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>forward_61
-----------------------------------------CGACGGAGCACTACCTCATC-------------------
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>reverse_1672
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-----------------------------------------------------------------------CCCGTCAGC
TGTTCGAAGAA---------------------------------------------------------------------
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