Multiple sequence alignment - TraesCS6B01G176400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G176400 chr6B 100.000 2707 0 0 1 2707 192737189 192739895 0.000000e+00 5000.0
1 TraesCS6B01G176400 chr6D 90.171 1231 67 20 789 1982 106048641 106049854 0.000000e+00 1554.0
2 TraesCS6B01G176400 chr6D 86.174 311 29 8 1 307 472923558 472923258 9.350000e-85 324.0
3 TraesCS6B01G176400 chr6D 84.840 343 26 15 308 640 106048210 106048536 3.360000e-84 322.0
4 TraesCS6B01G176400 chr6A 91.835 1041 69 5 789 1822 129316794 129317825 0.000000e+00 1437.0
5 TraesCS6B01G176400 chr6A 87.240 337 18 11 308 642 129316475 129316788 7.130000e-96 361.0
6 TraesCS6B01G176400 chr6A 87.402 254 32 0 54 307 169894993 169895246 2.640000e-75 292.0
7 TraesCS6B01G176400 chr2D 90.058 684 58 8 1983 2657 524406005 524405323 0.000000e+00 878.0
8 TraesCS6B01G176400 chr2D 88.264 622 59 13 1982 2598 20308980 20309592 0.000000e+00 732.0
9 TraesCS6B01G176400 chr2D 88.462 130 15 0 1240 1369 565484743 565484614 1.000000e-34 158.0
10 TraesCS6B01G176400 chr2D 89.744 78 7 1 1531 1607 565860997 565860920 6.170000e-17 99.0
11 TraesCS6B01G176400 chr2D 90.411 73 7 0 1534 1606 565590577 565590505 2.220000e-16 97.1
12 TraesCS6B01G176400 chr5D 89.343 685 63 8 1982 2657 493827051 493826368 0.000000e+00 852.0
13 TraesCS6B01G176400 chr5D 86.963 675 69 16 1983 2648 15366223 15365559 0.000000e+00 741.0
14 TraesCS6B01G176400 chr5D 88.141 624 60 13 1983 2601 311755214 311754600 0.000000e+00 730.0
15 TraesCS6B01G176400 chr5D 86.618 680 66 20 1983 2648 520742854 520742186 0.000000e+00 728.0
16 TraesCS6B01G176400 chr5D 84.264 394 40 15 1236 1609 373763306 373763697 5.510000e-97 364.0
17 TraesCS6B01G176400 chr5D 87.755 49 3 2 1652 1700 373763756 373763801 1.000000e-03 54.7
18 TraesCS6B01G176400 chr3B 87.202 672 73 9 1983 2646 825593491 825594157 0.000000e+00 752.0
19 TraesCS6B01G176400 chr3D 85.884 673 79 14 1982 2648 492671344 492670682 0.000000e+00 702.0
20 TraesCS6B01G176400 chr3D 90.411 146 11 2 647 790 452677633 452677777 3.560000e-44 189.0
21 TraesCS6B01G176400 chr1D 87.299 622 64 14 1983 2598 471670582 471671194 0.000000e+00 697.0
22 TraesCS6B01G176400 chr1D 93.056 144 7 1 647 790 342447641 342447781 9.820000e-50 207.0
23 TraesCS6B01G176400 chr1D 98.165 109 2 0 647 755 403375151 403375043 9.890000e-45 191.0
24 TraesCS6B01G176400 chr1D 91.071 112 10 0 993 1104 316678427 316678538 4.670000e-33 152.0
25 TraesCS6B01G176400 chr5B 91.518 224 19 0 1236 1459 445174018 445174241 2.620000e-80 309.0
26 TraesCS6B01G176400 chr5B 99.083 109 1 0 647 755 217679057 217679165 2.130000e-46 196.0
27 TraesCS6B01G176400 chr5B 99.083 109 1 0 647 755 595152702 595152810 2.130000e-46 196.0
28 TraesCS6B01G176400 chr5B 81.871 171 29 2 136 305 429779680 429779511 2.810000e-30 143.0
29 TraesCS6B01G176400 chr5B 93.827 81 5 0 1529 1609 445176983 445177063 3.660000e-24 122.0
30 TraesCS6B01G176400 chr5B 94.286 35 2 0 1666 1700 445177123 445177157 1.000000e-03 54.7
31 TraesCS6B01G176400 chrUn 99.074 108 1 0 647 754 79499434 79499541 7.650000e-46 195.0
32 TraesCS6B01G176400 chrUn 98.165 109 2 0 647 755 87206662 87206770 9.890000e-45 191.0
33 TraesCS6B01G176400 chrUn 100.000 36 0 0 757 792 80093550 80093515 1.740000e-07 67.6
34 TraesCS6B01G176400 chr1B 98.165 109 2 0 647 755 513463416 513463524 9.890000e-45 191.0
35 TraesCS6B01G176400 chr1B 91.964 112 9 0 993 1104 428801710 428801821 1.000000e-34 158.0
36 TraesCS6B01G176400 chr1B 83.237 173 27 2 136 307 482702241 482702070 1.000000e-34 158.0
37 TraesCS6B01G176400 chr4D 89.583 144 13 1 647 790 146299928 146299787 5.950000e-42 182.0
38 TraesCS6B01G176400 chr4D 91.818 110 8 1 999 1107 3588702 3588593 4.670000e-33 152.0
39 TraesCS6B01G176400 chr4B 90.441 136 13 0 1232 1367 5466296 5466431 2.140000e-41 180.0
40 TraesCS6B01G176400 chr4B 83.237 173 27 2 136 307 497235945 497236116 1.000000e-34 158.0
41 TraesCS6B01G176400 chr4A 90.909 132 12 0 1236 1367 601060003 601060134 7.700000e-41 178.0
42 TraesCS6B01G176400 chr4A 82.659 173 28 2 136 307 149101943 149101772 4.670000e-33 152.0
43 TraesCS6B01G176400 chr7B 86.928 153 17 2 648 798 134527820 134527971 4.640000e-38 169.0
44 TraesCS6B01G176400 chr7B 93.458 107 7 0 998 1104 657496273 657496379 2.790000e-35 159.0
45 TraesCS6B01G176400 chr7B 92.523 107 8 0 998 1104 657479339 657479445 1.300000e-33 154.0
46 TraesCS6B01G176400 chr2B 88.148 135 16 0 1240 1374 677856465 677856331 7.760000e-36 161.0
47 TraesCS6B01G176400 chr2B 89.610 77 7 1 1531 1606 678068665 678068589 2.220000e-16 97.1
48 TraesCS6B01G176400 chr2B 100.000 37 0 0 757 793 78079510 78079546 4.840000e-08 69.4
49 TraesCS6B01G176400 chr2B 100.000 35 0 0 757 791 567583819 567583785 6.260000e-07 65.8
50 TraesCS6B01G176400 chr2A 86.076 158 8 3 649 792 33602267 33602424 1.000000e-34 158.0
51 TraesCS6B01G176400 chr2A 89.744 78 7 1 1531 1607 706200537 706200460 6.170000e-17 99.0
52 TraesCS6B01G176400 chr2A 89.610 77 7 1 1531 1606 705926740 705926664 2.220000e-16 97.1
53 TraesCS6B01G176400 chr7D 92.523 107 8 0 998 1104 586765714 586765820 1.300000e-33 154.0
54 TraesCS6B01G176400 chr7D 81.818 165 28 2 135 298 204097529 204097366 1.310000e-28 137.0
55 TraesCS6B01G176400 chr1A 86.957 138 14 1 971 1104 397769737 397769874 4.670000e-33 152.0
56 TraesCS6B01G176400 chr1A 80.233 172 32 2 137 307 504727882 504727712 7.870000e-26 128.0
57 TraesCS6B01G176400 chr5A 82.812 64 10 1 1638 1700 475614672 475614735 3.770000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G176400 chr6B 192737189 192739895 2706 False 5000 5000 100.0000 1 2707 1 chr6B.!!$F1 2706
1 TraesCS6B01G176400 chr6D 106048210 106049854 1644 False 938 1554 87.5055 308 1982 2 chr6D.!!$F1 1674
2 TraesCS6B01G176400 chr6A 129316475 129317825 1350 False 899 1437 89.5375 308 1822 2 chr6A.!!$F2 1514
3 TraesCS6B01G176400 chr2D 524405323 524406005 682 True 878 878 90.0580 1983 2657 1 chr2D.!!$R1 674
4 TraesCS6B01G176400 chr2D 20308980 20309592 612 False 732 732 88.2640 1982 2598 1 chr2D.!!$F1 616
5 TraesCS6B01G176400 chr5D 493826368 493827051 683 True 852 852 89.3430 1982 2657 1 chr5D.!!$R3 675
6 TraesCS6B01G176400 chr5D 15365559 15366223 664 True 741 741 86.9630 1983 2648 1 chr5D.!!$R1 665
7 TraesCS6B01G176400 chr5D 311754600 311755214 614 True 730 730 88.1410 1983 2601 1 chr5D.!!$R2 618
8 TraesCS6B01G176400 chr5D 520742186 520742854 668 True 728 728 86.6180 1983 2648 1 chr5D.!!$R4 665
9 TraesCS6B01G176400 chr3B 825593491 825594157 666 False 752 752 87.2020 1983 2646 1 chr3B.!!$F1 663
10 TraesCS6B01G176400 chr3D 492670682 492671344 662 True 702 702 85.8840 1982 2648 1 chr3D.!!$R1 666
11 TraesCS6B01G176400 chr1D 471670582 471671194 612 False 697 697 87.2990 1983 2598 1 chr1D.!!$F3 615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
947 989 0.0297 CACGACCACTGTCACGTACA 59.97 55.0 0.0 0.0 41.85 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2240 2332 0.036483 CGGTCATGGTGATGTGGTGA 60.036 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.047125 CCAGGGAATGGGGTGCGT 62.047 66.667 0.00 0.00 46.36 5.24
25 26 2.751436 CAGGGAATGGGGTGCGTG 60.751 66.667 0.00 0.00 0.00 5.34
26 27 4.740822 AGGGAATGGGGTGCGTGC 62.741 66.667 0.00 0.00 0.00 5.34
27 28 4.740822 GGGAATGGGGTGCGTGCT 62.741 66.667 0.00 0.00 0.00 4.40
28 29 3.443045 GGAATGGGGTGCGTGCTG 61.443 66.667 0.00 0.00 0.00 4.41
29 30 2.359850 GAATGGGGTGCGTGCTGA 60.360 61.111 0.00 0.00 0.00 4.26
30 31 1.971167 GAATGGGGTGCGTGCTGAA 60.971 57.895 0.00 0.00 0.00 3.02
31 32 1.926511 GAATGGGGTGCGTGCTGAAG 61.927 60.000 0.00 0.00 0.00 3.02
42 43 3.368822 GCTGAAGCAACATGGGCA 58.631 55.556 13.20 0.00 41.59 5.36
43 44 1.667151 GCTGAAGCAACATGGGCAA 59.333 52.632 13.20 0.00 41.59 4.52
44 45 0.389426 GCTGAAGCAACATGGGCAAG 60.389 55.000 13.20 8.76 41.59 4.01
45 46 0.245539 CTGAAGCAACATGGGCAAGG 59.754 55.000 13.20 0.00 0.00 3.61
46 47 1.079612 GAAGCAACATGGGCAAGGC 60.080 57.895 13.20 0.31 0.00 4.35
58 59 4.479993 CAAGGCCGGCTCCTCCTG 62.480 72.222 28.56 8.18 34.82 3.86
63 64 2.765807 CCGGCTCCTCCTGGACAT 60.766 66.667 0.00 0.00 37.46 3.06
64 65 2.801631 CCGGCTCCTCCTGGACATC 61.802 68.421 0.00 0.00 37.46 3.06
65 66 2.060383 CGGCTCCTCCTGGACATCA 61.060 63.158 0.00 0.00 37.46 3.07
66 67 1.617018 CGGCTCCTCCTGGACATCAA 61.617 60.000 0.00 0.00 37.46 2.57
67 68 0.179936 GGCTCCTCCTGGACATCAAG 59.820 60.000 0.00 0.00 37.46 3.02
68 69 0.908198 GCTCCTCCTGGACATCAAGT 59.092 55.000 0.00 0.00 37.46 3.16
69 70 1.406614 GCTCCTCCTGGACATCAAGTG 60.407 57.143 0.00 0.00 37.46 3.16
70 71 0.615331 TCCTCCTGGACATCAAGTGC 59.385 55.000 0.00 0.00 37.46 4.40
71 72 0.393537 CCTCCTGGACATCAAGTGCC 60.394 60.000 0.00 0.00 37.86 5.01
72 73 0.742281 CTCCTGGACATCAAGTGCCG 60.742 60.000 0.00 0.00 37.86 5.69
73 74 1.003355 CCTGGACATCAAGTGCCGT 60.003 57.895 0.00 0.00 37.86 5.68
74 75 1.300971 CCTGGACATCAAGTGCCGTG 61.301 60.000 0.00 0.00 37.86 4.94
75 76 0.320683 CTGGACATCAAGTGCCGTGA 60.321 55.000 0.00 0.00 37.86 4.35
76 77 0.602638 TGGACATCAAGTGCCGTGAC 60.603 55.000 0.00 0.00 37.86 3.67
77 78 1.626654 GGACATCAAGTGCCGTGACG 61.627 60.000 0.00 0.00 31.47 4.35
78 79 0.666274 GACATCAAGTGCCGTGACGA 60.666 55.000 6.54 0.00 0.00 4.20
79 80 0.944311 ACATCAAGTGCCGTGACGAC 60.944 55.000 6.54 0.00 0.00 4.34
80 81 1.374252 ATCAAGTGCCGTGACGACC 60.374 57.895 6.54 0.00 0.00 4.79
81 82 2.094757 ATCAAGTGCCGTGACGACCA 62.095 55.000 6.54 0.00 0.00 4.02
82 83 1.885388 CAAGTGCCGTGACGACCAA 60.885 57.895 6.54 0.00 0.00 3.67
83 84 1.594293 AAGTGCCGTGACGACCAAG 60.594 57.895 6.54 0.00 0.00 3.61
84 85 2.279918 GTGCCGTGACGACCAAGT 60.280 61.111 6.54 0.00 0.00 3.16
85 86 1.007038 GTGCCGTGACGACCAAGTA 60.007 57.895 6.54 0.00 0.00 2.24
86 87 1.007336 GTGCCGTGACGACCAAGTAG 61.007 60.000 6.54 0.00 0.00 2.57
87 88 1.445582 GCCGTGACGACCAAGTAGG 60.446 63.158 6.54 0.00 45.67 3.18
88 89 1.214589 CCGTGACGACCAAGTAGGG 59.785 63.158 6.54 0.00 43.89 3.53
89 90 1.214589 CGTGACGACCAAGTAGGGG 59.785 63.158 0.00 0.00 43.89 4.79
90 91 1.079336 GTGACGACCAAGTAGGGGC 60.079 63.158 0.00 0.00 43.89 5.80
91 92 1.229082 TGACGACCAAGTAGGGGCT 60.229 57.895 0.00 0.00 43.89 5.19
92 93 1.255667 TGACGACCAAGTAGGGGCTC 61.256 60.000 0.00 0.00 43.89 4.70
93 94 2.280823 GACGACCAAGTAGGGGCTCG 62.281 65.000 0.00 0.00 43.89 5.03
94 95 2.187163 GACCAAGTAGGGGCTCGC 59.813 66.667 0.00 0.00 43.89 5.03
95 96 2.284699 ACCAAGTAGGGGCTCGCT 60.285 61.111 0.00 0.00 43.89 4.93
96 97 2.299503 GACCAAGTAGGGGCTCGCTC 62.300 65.000 0.00 0.00 43.89 5.03
97 98 2.501610 CAAGTAGGGGCTCGCTCC 59.498 66.667 0.00 0.00 36.66 4.70
98 99 2.038975 AAGTAGGGGCTCGCTCCA 59.961 61.111 10.95 0.00 39.60 3.86
99 100 1.383248 AAGTAGGGGCTCGCTCCAT 60.383 57.895 10.95 0.00 39.60 3.41
100 101 1.690219 AAGTAGGGGCTCGCTCCATG 61.690 60.000 10.95 0.00 39.60 3.66
101 102 3.550431 TAGGGGCTCGCTCCATGC 61.550 66.667 10.95 0.00 39.60 4.06
106 107 3.574445 GCTCGCTCCATGCTGCAG 61.574 66.667 10.11 10.11 40.11 4.41
107 108 2.186125 CTCGCTCCATGCTGCAGA 59.814 61.111 20.43 2.70 40.11 4.26
108 109 1.449070 CTCGCTCCATGCTGCAGAA 60.449 57.895 20.43 7.68 40.11 3.02
109 110 1.003476 TCGCTCCATGCTGCAGAAA 60.003 52.632 20.43 4.69 40.11 2.52
110 111 1.136147 CGCTCCATGCTGCAGAAAC 59.864 57.895 20.43 0.00 40.11 2.78
111 112 1.509923 GCTCCATGCTGCAGAAACC 59.490 57.895 20.43 0.00 38.95 3.27
112 113 1.941999 GCTCCATGCTGCAGAAACCC 61.942 60.000 20.43 0.00 38.95 4.11
113 114 0.609957 CTCCATGCTGCAGAAACCCA 60.610 55.000 20.43 5.55 0.00 4.51
114 115 0.609957 TCCATGCTGCAGAAACCCAG 60.610 55.000 20.43 0.00 0.00 4.45
115 116 0.896940 CCATGCTGCAGAAACCCAGT 60.897 55.000 20.43 0.00 0.00 4.00
116 117 0.524862 CATGCTGCAGAAACCCAGTC 59.475 55.000 20.43 0.00 0.00 3.51
117 118 0.610232 ATGCTGCAGAAACCCAGTCC 60.610 55.000 20.43 0.00 0.00 3.85
118 119 2.328099 GCTGCAGAAACCCAGTCCG 61.328 63.158 20.43 0.00 0.00 4.79
119 120 2.281484 TGCAGAAACCCAGTCCGC 60.281 61.111 0.00 0.00 0.00 5.54
120 121 2.281484 GCAGAAACCCAGTCCGCA 60.281 61.111 0.00 0.00 0.00 5.69
121 122 2.328099 GCAGAAACCCAGTCCGCAG 61.328 63.158 0.00 0.00 0.00 5.18
145 146 3.909662 CGGAGGTGCCTGATTTGG 58.090 61.111 0.00 0.00 0.00 3.28
152 153 3.464494 GCCTGATTTGGCCCTGGC 61.464 66.667 10.96 10.96 46.82 4.85
153 154 2.037687 CCTGATTTGGCCCTGGCA 59.962 61.111 10.86 0.00 44.11 4.92
154 155 2.056223 CCTGATTTGGCCCTGGCAG 61.056 63.158 7.75 7.75 44.11 4.85
155 156 2.037687 TGATTTGGCCCTGGCAGG 59.962 61.111 27.04 27.04 44.11 4.85
164 165 2.123982 CCTGGCAGGGATGAAGGC 60.124 66.667 26.34 0.00 0.00 4.35
165 166 2.515523 CTGGCAGGGATGAAGGCG 60.516 66.667 6.61 0.00 0.00 5.52
166 167 3.329889 TGGCAGGGATGAAGGCGT 61.330 61.111 0.00 0.00 0.00 5.68
167 168 2.514824 GGCAGGGATGAAGGCGTC 60.515 66.667 0.00 0.00 0.00 5.19
168 169 2.892425 GCAGGGATGAAGGCGTCG 60.892 66.667 0.00 0.00 0.00 5.12
169 170 2.892640 CAGGGATGAAGGCGTCGA 59.107 61.111 0.00 0.00 0.00 4.20
170 171 1.519455 CAGGGATGAAGGCGTCGAC 60.519 63.158 5.18 5.18 0.00 4.20
171 172 2.582498 GGGATGAAGGCGTCGACG 60.582 66.667 32.57 32.57 43.27 5.12
172 173 2.181021 GGATGAAGGCGTCGACGT 59.819 61.111 35.48 19.18 42.22 4.34
173 174 1.872679 GGATGAAGGCGTCGACGTC 60.873 63.158 33.71 33.71 45.56 4.34
191 192 4.864334 GGGGACGATGGCAGCTGG 62.864 72.222 17.12 0.00 0.00 4.85
202 203 4.154347 CAGCTGGCCGAGGGAGAC 62.154 72.222 5.57 0.00 0.00 3.36
210 211 2.947542 CGAGGGAGACGCGGATAG 59.052 66.667 12.47 0.00 38.81 2.08
211 212 1.597302 CGAGGGAGACGCGGATAGA 60.597 63.158 12.47 0.00 38.81 1.98
212 213 1.570347 CGAGGGAGACGCGGATAGAG 61.570 65.000 12.47 0.00 38.81 2.43
213 214 1.228306 AGGGAGACGCGGATAGAGG 60.228 63.158 12.47 0.00 0.00 3.69
214 215 2.269529 GGGAGACGCGGATAGAGGG 61.270 68.421 12.47 0.00 0.00 4.30
215 216 1.228184 GGAGACGCGGATAGAGGGA 60.228 63.158 12.47 0.00 0.00 4.20
216 217 1.238625 GGAGACGCGGATAGAGGGAG 61.239 65.000 12.47 0.00 0.00 4.30
217 218 1.858372 GAGACGCGGATAGAGGGAGC 61.858 65.000 12.47 0.00 0.00 4.70
218 219 2.123854 ACGCGGATAGAGGGAGCA 60.124 61.111 12.47 0.00 0.00 4.26
219 220 2.136196 GACGCGGATAGAGGGAGCAG 62.136 65.000 12.47 0.00 0.00 4.24
220 221 2.925262 CGCGGATAGAGGGAGCAGG 61.925 68.421 0.00 0.00 0.00 4.85
221 222 2.578714 GCGGATAGAGGGAGCAGGG 61.579 68.421 0.00 0.00 0.00 4.45
222 223 1.910772 CGGATAGAGGGAGCAGGGG 60.911 68.421 0.00 0.00 0.00 4.79
223 224 1.237458 GGATAGAGGGAGCAGGGGT 59.763 63.158 0.00 0.00 0.00 4.95
224 225 1.124477 GGATAGAGGGAGCAGGGGTG 61.124 65.000 0.00 0.00 0.00 4.61
225 226 1.074167 ATAGAGGGAGCAGGGGTGG 60.074 63.158 0.00 0.00 0.00 4.61
226 227 1.902818 ATAGAGGGAGCAGGGGTGGT 61.903 60.000 0.00 0.00 0.00 4.16
227 228 2.822643 TAGAGGGAGCAGGGGTGGTG 62.823 65.000 0.00 0.00 0.00 4.17
251 252 3.402681 CCGGTCCTCTGCCCACAT 61.403 66.667 0.00 0.00 0.00 3.21
252 253 2.063979 CCGGTCCTCTGCCCACATA 61.064 63.158 0.00 0.00 0.00 2.29
253 254 1.410850 CCGGTCCTCTGCCCACATAT 61.411 60.000 0.00 0.00 0.00 1.78
254 255 0.250038 CGGTCCTCTGCCCACATATG 60.250 60.000 0.00 0.00 0.00 1.78
255 256 0.109342 GGTCCTCTGCCCACATATGG 59.891 60.000 7.80 0.00 46.81 2.74
266 267 1.800805 CACATATGGATGAGTCGGCC 58.199 55.000 7.80 0.00 36.48 6.13
267 268 1.345741 CACATATGGATGAGTCGGCCT 59.654 52.381 7.80 0.00 36.48 5.19
268 269 2.050144 ACATATGGATGAGTCGGCCTT 58.950 47.619 7.80 0.00 36.48 4.35
269 270 2.224378 ACATATGGATGAGTCGGCCTTG 60.224 50.000 7.80 0.00 36.48 3.61
270 271 0.106708 TATGGATGAGTCGGCCTTGC 59.893 55.000 0.00 0.00 0.00 4.01
271 272 2.892425 GGATGAGTCGGCCTTGCG 60.892 66.667 0.00 0.00 0.00 4.85
272 273 2.892425 GATGAGTCGGCCTTGCGG 60.892 66.667 0.00 0.00 0.00 5.69
273 274 4.473520 ATGAGTCGGCCTTGCGGG 62.474 66.667 0.00 0.00 38.36 6.13
275 276 4.821589 GAGTCGGCCTTGCGGGAG 62.822 72.222 0.00 0.00 37.23 4.30
431 434 4.916983 TTCTCCAATGACACCACTTTTG 57.083 40.909 0.00 0.00 0.00 2.44
443 446 6.056090 ACACCACTTTTGTAAAATTTGGGT 57.944 33.333 16.26 11.07 36.21 4.51
458 461 8.996024 AAAATTTGGGTTTTCCTGTATATTCG 57.004 30.769 0.00 0.00 40.46 3.34
460 463 4.223556 TGGGTTTTCCTGTATATTCGCA 57.776 40.909 0.00 0.00 40.46 5.10
519 522 6.679327 AACAGATCTTTACCGGAAATAAGC 57.321 37.500 9.46 0.00 0.00 3.09
543 557 4.001652 TCGTTGCGGTTGGAAATATTGTA 58.998 39.130 0.00 0.00 0.00 2.41
544 558 4.636648 TCGTTGCGGTTGGAAATATTGTAT 59.363 37.500 0.00 0.00 0.00 2.29
546 560 5.802956 CGTTGCGGTTGGAAATATTGTATTT 59.197 36.000 0.00 0.00 0.00 1.40
548 562 7.148722 CGTTGCGGTTGGAAATATTGTATTTTT 60.149 33.333 0.00 0.00 0.00 1.94
550 564 7.155328 TGCGGTTGGAAATATTGTATTTTTGT 58.845 30.769 0.00 0.00 0.00 2.83
551 565 8.304596 TGCGGTTGGAAATATTGTATTTTTGTA 58.695 29.630 0.00 0.00 0.00 2.41
552 566 9.308318 GCGGTTGGAAATATTGTATTTTTGTAT 57.692 29.630 0.00 0.00 0.00 2.29
565 579 8.027440 TGTATTTTTGTATGGAAGCAAATTGC 57.973 30.769 10.41 10.41 45.46 3.56
570 584 1.647346 ATGGAAGCAAATTGCATGCG 58.353 45.000 20.82 0.00 46.97 4.73
571 585 1.066716 ATGGAAGCAAATTGCATGCGT 60.067 42.857 20.82 12.12 46.97 5.24
572 586 3.247236 ATGGAAGCAAATTGCATGCGTG 61.247 45.455 20.82 9.48 46.97 5.34
573 587 5.478609 ATGGAAGCAAATTGCATGCGTGA 62.479 43.478 20.82 1.55 46.97 4.35
615 629 6.640092 GCCTAGTTAAATAGATGTACCGTGAC 59.360 42.308 11.43 0.00 0.00 3.67
639 680 7.793036 ACTTATGGGAGTAGTTATCAGGAAAC 58.207 38.462 0.00 0.00 0.00 2.78
640 681 7.402071 ACTTATGGGAGTAGTTATCAGGAAACA 59.598 37.037 0.00 0.00 0.00 2.83
641 682 6.636454 ATGGGAGTAGTTATCAGGAAACAA 57.364 37.500 0.00 0.00 0.00 2.83
642 683 6.049955 TGGGAGTAGTTATCAGGAAACAAG 57.950 41.667 0.00 0.00 0.00 3.16
644 685 6.043938 TGGGAGTAGTTATCAGGAAACAAGTT 59.956 38.462 0.00 0.00 0.00 2.66
646 687 7.548427 GGGAGTAGTTATCAGGAAACAAGTTAC 59.452 40.741 0.00 0.00 0.00 2.50
647 688 7.548427 GGAGTAGTTATCAGGAAACAAGTTACC 59.452 40.741 0.00 0.00 0.00 2.85
648 689 8.203681 AGTAGTTATCAGGAAACAAGTTACCT 57.796 34.615 0.00 0.00 0.00 3.08
649 690 8.312564 AGTAGTTATCAGGAAACAAGTTACCTC 58.687 37.037 0.00 0.00 0.00 3.85
650 691 6.473758 AGTTATCAGGAAACAAGTTACCTCC 58.526 40.000 0.00 0.00 0.00 4.30
651 692 3.396260 TCAGGAAACAAGTTACCTCCG 57.604 47.619 0.00 0.00 0.00 4.63
653 694 3.135167 TCAGGAAACAAGTTACCTCCGTT 59.865 43.478 0.00 0.00 0.00 4.44
654 695 3.497262 CAGGAAACAAGTTACCTCCGTTC 59.503 47.826 0.00 0.00 0.00 3.95
656 697 3.495629 GGAAACAAGTTACCTCCGTTCCT 60.496 47.826 0.00 0.00 0.00 3.36
658 699 4.961438 AACAAGTTACCTCCGTTCCTAA 57.039 40.909 0.00 0.00 0.00 2.69
660 701 5.494390 ACAAGTTACCTCCGTTCCTAAAT 57.506 39.130 0.00 0.00 0.00 1.40
661 702 6.610075 ACAAGTTACCTCCGTTCCTAAATA 57.390 37.500 0.00 0.00 0.00 1.40
662 703 7.008021 ACAAGTTACCTCCGTTCCTAAATAA 57.992 36.000 0.00 0.00 0.00 1.40
663 704 7.627311 ACAAGTTACCTCCGTTCCTAAATAAT 58.373 34.615 0.00 0.00 0.00 1.28
665 706 8.395633 CAAGTTACCTCCGTTCCTAAATAATTG 58.604 37.037 0.00 0.00 0.00 2.32
669 710 6.718294 ACCTCCGTTCCTAAATAATTGTCTT 58.282 36.000 0.00 0.00 0.00 3.01
671 712 7.336176 ACCTCCGTTCCTAAATAATTGTCTTTC 59.664 37.037 0.00 0.00 0.00 2.62
673 714 9.595823 CTCCGTTCCTAAATAATTGTCTTTCTA 57.404 33.333 0.00 0.00 0.00 2.10
699 740 9.355215 AGAGATTTTAACAAGTGACTACATACG 57.645 33.333 0.00 0.00 0.00 3.06
703 744 6.939551 TTAACAAGTGACTACATACGAAGC 57.060 37.500 0.00 0.00 0.00 3.86
704 745 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
705 746 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
706 747 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
707 748 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
710 751 6.163476 AGTGACTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
711 752 6.311445 AGTGACTACATACGAAGCAAAATGAG 59.689 38.462 0.00 0.00 0.00 2.90
712 753 6.090898 GTGACTACATACGAAGCAAAATGAGT 59.909 38.462 0.00 0.00 0.00 3.41
713 754 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
714 755 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
715 756 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
716 757 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
718 759 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
719 760 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
720 761 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
722 763 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
735 776 8.764524 AGTGAATCTACACTCTAAAACATGTC 57.235 34.615 0.00 0.00 46.36 3.06
736 777 8.589338 AGTGAATCTACACTCTAAAACATGTCT 58.411 33.333 0.00 0.00 46.36 3.41
737 778 9.856488 GTGAATCTACACTCTAAAACATGTCTA 57.144 33.333 0.00 0.00 37.73 2.59
738 779 9.856488 TGAATCTACACTCTAAAACATGTCTAC 57.144 33.333 0.00 0.00 0.00 2.59
745 786 9.587772 ACACTCTAAAACATGTCTACATACATC 57.412 33.333 0.00 0.00 38.01 3.06
746 787 9.035607 CACTCTAAAACATGTCTACATACATCC 57.964 37.037 0.00 0.00 38.01 3.51
747 788 7.921214 ACTCTAAAACATGTCTACATACATCCG 59.079 37.037 0.00 0.00 38.01 4.18
748 789 7.778083 TCTAAAACATGTCTACATACATCCGT 58.222 34.615 0.00 0.00 38.01 4.69
749 790 8.905850 TCTAAAACATGTCTACATACATCCGTA 58.094 33.333 0.00 0.00 38.01 4.02
750 791 9.692749 CTAAAACATGTCTACATACATCCGTAT 57.307 33.333 0.00 0.00 38.01 3.06
760 801 5.134202 CATACATCCGTATGTTGGCTAGA 57.866 43.478 0.00 0.00 46.70 2.43
761 802 5.538118 CATACATCCGTATGTTGGCTAGAA 58.462 41.667 0.00 0.00 46.70 2.10
762 803 4.481368 ACATCCGTATGTTGGCTAGAAA 57.519 40.909 0.00 0.00 44.07 2.52
763 804 4.442706 ACATCCGTATGTTGGCTAGAAAG 58.557 43.478 0.00 0.00 44.07 2.62
764 805 4.161565 ACATCCGTATGTTGGCTAGAAAGA 59.838 41.667 0.00 0.00 44.07 2.52
765 806 4.119442 TCCGTATGTTGGCTAGAAAGAC 57.881 45.455 0.00 0.00 0.00 3.01
766 807 3.512329 TCCGTATGTTGGCTAGAAAGACA 59.488 43.478 0.00 0.00 39.75 3.41
767 808 9.625646 ACATCCGTATGTTGGCTAGAAAGACAA 62.626 40.741 0.00 0.00 44.07 3.18
780 821 9.704098 GGCTAGAAAGACAATTATTTAGAAACG 57.296 33.333 0.00 0.00 0.00 3.60
781 822 9.704098 GCTAGAAAGACAATTATTTAGAAACGG 57.296 33.333 0.00 0.00 0.00 4.44
784 825 8.947115 AGAAAGACAATTATTTAGAAACGGAGG 58.053 33.333 0.00 0.00 0.00 4.30
785 826 7.625828 AAGACAATTATTTAGAAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
786 827 6.954232 AGACAATTATTTAGAAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
787 828 7.048512 AGACAATTATTTAGAAACGGAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
792 833 7.486407 TTATTTAGAAACGGAGGGAGTAGTT 57.514 36.000 0.00 0.00 0.00 2.24
793 834 5.397142 TTTAGAAACGGAGGGAGTAGTTC 57.603 43.478 0.00 0.00 0.00 3.01
866 907 0.038067 TAGCGCTTGCGTTTCCTACA 60.038 50.000 18.68 0.00 45.69 2.74
867 908 0.882927 AGCGCTTGCGTTTCCTACAA 60.883 50.000 16.38 0.00 45.69 2.41
868 909 0.168128 GCGCTTGCGTTTCCTACAAT 59.832 50.000 16.38 0.00 0.00 2.71
869 910 1.790481 GCGCTTGCGTTTCCTACAATC 60.790 52.381 16.38 0.00 0.00 2.67
937 979 0.253044 CCATTCCCATCACGACCACT 59.747 55.000 0.00 0.00 0.00 4.00
947 989 0.029700 CACGACCACTGTCACGTACA 59.970 55.000 0.00 0.00 41.85 2.90
950 992 0.308684 GACCACTGTCACGTACACGA 59.691 55.000 9.04 0.00 40.58 4.35
997 1039 2.280524 CAGTTGGTCGTTCCGGCA 60.281 61.111 0.00 0.00 39.52 5.69
1012 1054 1.660167 CGGCAAGATGCAGATCTTCA 58.340 50.000 0.00 0.00 44.30 3.02
1068 1110 1.446792 CGAGAGCAGCGACACCATT 60.447 57.895 0.00 0.00 0.00 3.16
1104 1146 2.222227 AAATCCAGGACAAGGAAGGC 57.778 50.000 0.00 0.00 38.93 4.35
1109 1151 0.984230 CAGGACAAGGAAGGCAGGTA 59.016 55.000 0.00 0.00 0.00 3.08
1116 1158 2.424956 CAAGGAAGGCAGGTAGATTTGC 59.575 50.000 0.00 0.00 39.56 3.68
1135 1177 2.391389 CCTTTGCTTCGTCTCCCGC 61.391 63.158 0.00 0.00 36.19 6.13
1206 1248 5.909054 CGTTTACTACATGCATATGCTTTGG 59.091 40.000 27.13 15.34 42.66 3.28
1213 1255 1.477700 TGCATATGCTTTGGGCTGAAC 59.522 47.619 27.13 0.00 42.66 3.18
1217 1261 2.584835 ATGCTTTGGGCTGAACACTA 57.415 45.000 0.00 0.00 42.39 2.74
1503 1547 2.145053 GCATGCTTATATACGTGCGC 57.855 50.000 11.37 0.00 38.87 6.09
1504 1548 1.459209 GCATGCTTATATACGTGCGCA 59.541 47.619 5.66 5.66 38.87 6.09
1630 1678 5.278561 GGTGAGCTAGCGTAGTCTAATCAAT 60.279 44.000 9.55 0.00 0.00 2.57
1711 1759 4.907879 AGAAGAAGTTTGTTTGAGCAGG 57.092 40.909 0.00 0.00 0.00 4.85
1731 1779 1.079543 AGCGAGCGAGCAATTCTGT 60.080 52.632 9.01 0.00 40.15 3.41
1744 1792 3.544244 GCAATTCTGTTTCGTCGGCTATC 60.544 47.826 0.00 0.00 0.00 2.08
1801 1849 6.270064 TGAATAAATCGTCTTAGCATCGTGA 58.730 36.000 0.00 0.00 0.00 4.35
1803 1851 3.784701 AATCGTCTTAGCATCGTGACT 57.215 42.857 0.00 0.00 0.00 3.41
1811 1859 0.961753 AGCATCGTGACTGTGTCAGA 59.038 50.000 0.20 2.32 43.57 3.27
1816 1864 2.809446 TCGTGACTGTGTCAGAGTTTG 58.191 47.619 3.83 0.00 43.57 2.93
1827 1902 5.112686 GTGTCAGAGTTTGAAGTTGAGTCT 58.887 41.667 0.00 0.00 37.61 3.24
1837 1912 7.808856 AGTTTGAAGTTGAGTCTATCGTTAGTC 59.191 37.037 0.63 0.00 0.00 2.59
1853 1928 7.392494 TCGTTAGTCTCATAGTCAAGTTCAT 57.608 36.000 0.00 0.00 0.00 2.57
1855 1930 7.337184 TCGTTAGTCTCATAGTCAAGTTCATCT 59.663 37.037 0.00 0.00 0.00 2.90
1860 1935 7.980662 AGTCTCATAGTCAAGTTCATCTCAATG 59.019 37.037 0.00 0.00 0.00 2.82
1871 1946 8.344831 CAAGTTCATCTCAATGTAAAGTGTCAA 58.655 33.333 0.00 0.00 34.32 3.18
1872 1947 8.450578 AGTTCATCTCAATGTAAAGTGTCAAA 57.549 30.769 0.00 0.00 34.32 2.69
1873 1948 8.562892 AGTTCATCTCAATGTAAAGTGTCAAAG 58.437 33.333 0.00 0.00 34.32 2.77
1874 1949 6.902341 TCATCTCAATGTAAAGTGTCAAAGC 58.098 36.000 0.00 0.00 34.32 3.51
1884 1959 3.366052 AGTGTCAAAGCCCGGATATTT 57.634 42.857 0.73 0.00 0.00 1.40
1902 1977 4.718940 ATTTTAATCCTTCGCAACCTGG 57.281 40.909 0.00 0.00 0.00 4.45
1907 1982 1.314730 TCCTTCGCAACCTGGTTTTC 58.685 50.000 9.90 3.97 0.00 2.29
1923 2003 6.461648 CCTGGTTTTCCTTCTTTTTCTTCTCC 60.462 42.308 0.00 0.00 41.38 3.71
1957 2037 0.179111 CTTCTGACGCAATCGGCCTA 60.179 55.000 0.00 0.00 44.89 3.93
2014 2094 1.067212 CTCTATCCCGTTCGAACCCAG 59.933 57.143 22.07 11.10 0.00 4.45
2086 2168 4.994756 GGTTGGTGGGCCCTGTGG 62.995 72.222 25.70 0.00 0.00 4.17
2101 2186 0.611200 TGTGGCCCGCGCTATATAAT 59.389 50.000 5.56 0.00 34.44 1.28
2117 2205 1.963761 TAATAGAGGTGGGGCCGGGA 61.964 60.000 2.18 0.00 43.70 5.14
2136 2224 0.742505 ACACGTCTCACGAGGTTGAA 59.257 50.000 2.48 0.00 46.05 2.69
2156 2244 2.123511 CTGCCACAAACCCCACCA 60.124 61.111 0.00 0.00 0.00 4.17
2187 2275 0.533531 TCGATCTAGGGTAAGCGCGA 60.534 55.000 12.10 0.00 0.00 5.87
2236 2328 1.226802 CTCTCTGTCCACATCGCCG 60.227 63.158 0.00 0.00 0.00 6.46
2262 2355 2.125147 ACATCACCATGACCGGCG 60.125 61.111 0.00 0.00 33.72 6.46
2371 2469 3.432186 CCAGATCGGGCTAGTTGATTTCA 60.432 47.826 0.00 0.00 0.00 2.69
2619 2721 1.301401 GCAAGGTGGACGTACAGCA 60.301 57.895 30.24 0.00 41.12 4.41
2626 2728 2.881352 GACGTACAGCAGGCGAGC 60.881 66.667 0.00 0.00 0.00 5.03
2667 2769 3.119096 GTTCGCTTGGTCGCCCTC 61.119 66.667 0.00 0.00 0.00 4.30
2668 2770 4.735132 TTCGCTTGGTCGCCCTCG 62.735 66.667 0.00 0.00 0.00 4.63
2686 2788 4.704833 GGCGCACAAGGGAGCAGA 62.705 66.667 10.83 0.00 0.00 4.26
2687 2789 3.123620 GCGCACAAGGGAGCAGAG 61.124 66.667 0.30 0.00 0.00 3.35
2688 2790 2.435586 CGCACAAGGGAGCAGAGG 60.436 66.667 0.00 0.00 0.00 3.69
2689 2791 2.947532 CGCACAAGGGAGCAGAGGA 61.948 63.158 0.00 0.00 0.00 3.71
2690 2792 1.078567 GCACAAGGGAGCAGAGGAG 60.079 63.158 0.00 0.00 0.00 3.69
2691 2793 1.548357 GCACAAGGGAGCAGAGGAGA 61.548 60.000 0.00 0.00 0.00 3.71
2692 2794 0.536260 CACAAGGGAGCAGAGGAGAG 59.464 60.000 0.00 0.00 0.00 3.20
2693 2795 1.264045 ACAAGGGAGCAGAGGAGAGC 61.264 60.000 0.00 0.00 0.00 4.09
2694 2796 1.688884 AAGGGAGCAGAGGAGAGCC 60.689 63.158 0.00 0.00 0.00 4.70
2695 2797 3.160748 GGGAGCAGAGGAGAGCCC 61.161 72.222 0.00 0.00 33.31 5.19
2703 2805 3.013932 AGGAGAGCCCTGCCCTTG 61.014 66.667 0.00 0.00 45.61 3.61
2704 2806 4.811364 GGAGAGCCCTGCCCTTGC 62.811 72.222 0.00 0.00 38.26 4.01
2705 2807 4.811364 GAGAGCCCTGCCCTTGCC 62.811 72.222 0.00 0.00 36.33 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.929244 CCCCATTCCCTGGTTCTCAT 59.071 55.000 0.00 0.00 44.30 2.90
1 2 0.477597 ACCCCATTCCCTGGTTCTCA 60.478 55.000 0.00 0.00 44.30 3.27
2 3 0.034089 CACCCCATTCCCTGGTTCTC 60.034 60.000 0.00 0.00 44.30 2.87
3 4 2.087248 CACCCCATTCCCTGGTTCT 58.913 57.895 0.00 0.00 44.30 3.01
4 5 1.682344 GCACCCCATTCCCTGGTTC 60.682 63.158 0.00 0.00 44.30 3.62
5 6 2.445155 GCACCCCATTCCCTGGTT 59.555 61.111 0.00 0.00 44.30 3.67
6 7 4.047125 CGCACCCCATTCCCTGGT 62.047 66.667 0.00 0.00 44.30 4.00
7 8 4.047125 ACGCACCCCATTCCCTGG 62.047 66.667 0.00 0.00 45.51 4.45
8 9 2.751436 CACGCACCCCATTCCCTG 60.751 66.667 0.00 0.00 0.00 4.45
9 10 4.740822 GCACGCACCCCATTCCCT 62.741 66.667 0.00 0.00 0.00 4.20
10 11 4.740822 AGCACGCACCCCATTCCC 62.741 66.667 0.00 0.00 0.00 3.97
11 12 3.443045 CAGCACGCACCCCATTCC 61.443 66.667 0.00 0.00 0.00 3.01
12 13 1.926511 CTTCAGCACGCACCCCATTC 61.927 60.000 0.00 0.00 0.00 2.67
13 14 1.973281 CTTCAGCACGCACCCCATT 60.973 57.895 0.00 0.00 0.00 3.16
14 15 2.360350 CTTCAGCACGCACCCCAT 60.360 61.111 0.00 0.00 0.00 4.00
25 26 0.389426 CTTGCCCATGTTGCTTCAGC 60.389 55.000 6.10 0.00 42.50 4.26
26 27 0.245539 CCTTGCCCATGTTGCTTCAG 59.754 55.000 6.10 0.80 0.00 3.02
27 28 1.818959 GCCTTGCCCATGTTGCTTCA 61.819 55.000 6.10 0.00 0.00 3.02
28 29 1.079612 GCCTTGCCCATGTTGCTTC 60.080 57.895 6.10 0.00 0.00 3.86
29 30 2.586293 GGCCTTGCCCATGTTGCTT 61.586 57.895 0.00 0.00 44.06 3.91
30 31 2.999063 GGCCTTGCCCATGTTGCT 60.999 61.111 0.00 0.00 44.06 3.91
41 42 4.479993 CAGGAGGAGCCGGCCTTG 62.480 72.222 26.15 10.75 43.43 3.61
46 47 2.765807 ATGTCCAGGAGGAGCCGG 60.766 66.667 0.00 0.00 46.92 6.13
47 48 1.617018 TTGATGTCCAGGAGGAGCCG 61.617 60.000 0.00 0.00 46.92 5.52
48 49 0.179936 CTTGATGTCCAGGAGGAGCC 59.820 60.000 0.00 0.00 46.92 4.70
49 50 0.908198 ACTTGATGTCCAGGAGGAGC 59.092 55.000 0.00 0.00 46.92 4.70
50 51 1.406614 GCACTTGATGTCCAGGAGGAG 60.407 57.143 0.00 0.00 46.92 3.69
51 52 0.615331 GCACTTGATGTCCAGGAGGA 59.385 55.000 0.00 0.00 43.21 3.71
52 53 0.393537 GGCACTTGATGTCCAGGAGG 60.394 60.000 0.00 0.00 0.00 4.30
53 54 0.742281 CGGCACTTGATGTCCAGGAG 60.742 60.000 0.00 0.00 0.00 3.69
54 55 1.296392 CGGCACTTGATGTCCAGGA 59.704 57.895 0.00 0.00 0.00 3.86
55 56 1.003355 ACGGCACTTGATGTCCAGG 60.003 57.895 0.00 0.00 0.00 4.45
56 57 0.320683 TCACGGCACTTGATGTCCAG 60.321 55.000 0.00 0.00 29.42 3.86
57 58 0.602638 GTCACGGCACTTGATGTCCA 60.603 55.000 0.00 0.00 39.27 4.02
58 59 1.626654 CGTCACGGCACTTGATGTCC 61.627 60.000 0.00 0.00 39.27 4.02
59 60 0.666274 TCGTCACGGCACTTGATGTC 60.666 55.000 0.00 0.00 43.06 3.06
60 61 0.944311 GTCGTCACGGCACTTGATGT 60.944 55.000 0.00 0.00 43.06 3.06
61 62 1.626654 GGTCGTCACGGCACTTGATG 61.627 60.000 3.20 0.00 43.77 3.07
62 63 1.374252 GGTCGTCACGGCACTTGAT 60.374 57.895 3.20 0.00 39.27 2.57
63 64 2.028484 GGTCGTCACGGCACTTGA 59.972 61.111 3.20 0.00 32.98 3.02
64 65 1.831389 CTTGGTCGTCACGGCACTTG 61.831 60.000 3.20 0.00 30.88 3.16
65 66 1.594293 CTTGGTCGTCACGGCACTT 60.594 57.895 3.20 0.00 30.88 3.16
66 67 1.457823 TACTTGGTCGTCACGGCACT 61.458 55.000 3.20 0.00 30.88 4.40
67 68 1.007038 TACTTGGTCGTCACGGCAC 60.007 57.895 3.20 0.00 30.88 5.01
68 69 1.287815 CTACTTGGTCGTCACGGCA 59.712 57.895 3.20 0.00 30.88 5.69
69 70 1.445582 CCTACTTGGTCGTCACGGC 60.446 63.158 0.00 0.00 0.00 5.68
70 71 1.214589 CCCTACTTGGTCGTCACGG 59.785 63.158 0.00 0.00 0.00 4.94
71 72 1.214589 CCCCTACTTGGTCGTCACG 59.785 63.158 0.00 0.00 0.00 4.35
72 73 1.079336 GCCCCTACTTGGTCGTCAC 60.079 63.158 0.00 0.00 0.00 3.67
73 74 1.229082 AGCCCCTACTTGGTCGTCA 60.229 57.895 0.00 0.00 0.00 4.35
74 75 1.516423 GAGCCCCTACTTGGTCGTC 59.484 63.158 0.00 0.00 0.00 4.20
75 76 2.348888 CGAGCCCCTACTTGGTCGT 61.349 63.158 0.00 0.00 44.79 4.34
76 77 2.494918 CGAGCCCCTACTTGGTCG 59.505 66.667 0.00 0.00 44.55 4.79
77 78 2.187163 GCGAGCCCCTACTTGGTC 59.813 66.667 0.00 0.00 0.00 4.02
78 79 2.284699 AGCGAGCCCCTACTTGGT 60.285 61.111 0.00 0.00 0.00 3.67
79 80 2.501610 GAGCGAGCCCCTACTTGG 59.498 66.667 0.00 0.00 0.00 3.61
80 81 1.690219 ATGGAGCGAGCCCCTACTTG 61.690 60.000 0.00 0.00 0.00 3.16
81 82 1.383248 ATGGAGCGAGCCCCTACTT 60.383 57.895 0.00 0.00 0.00 2.24
82 83 2.136878 CATGGAGCGAGCCCCTACT 61.137 63.158 0.00 0.00 0.00 2.57
83 84 2.423446 CATGGAGCGAGCCCCTAC 59.577 66.667 0.00 0.00 0.00 3.18
84 85 3.550431 GCATGGAGCGAGCCCCTA 61.550 66.667 0.00 0.00 0.00 3.53
95 96 0.609957 CTGGGTTTCTGCAGCATGGA 60.610 55.000 9.47 0.00 35.86 3.41
96 97 0.896940 ACTGGGTTTCTGCAGCATGG 60.897 55.000 9.47 0.00 35.86 3.66
97 98 0.524862 GACTGGGTTTCTGCAGCATG 59.475 55.000 9.47 0.00 40.87 4.06
98 99 0.610232 GGACTGGGTTTCTGCAGCAT 60.610 55.000 9.47 0.00 0.00 3.79
99 100 1.228245 GGACTGGGTTTCTGCAGCA 60.228 57.895 9.47 0.00 0.00 4.41
100 101 2.328099 CGGACTGGGTTTCTGCAGC 61.328 63.158 9.47 0.00 0.00 5.25
101 102 2.328099 GCGGACTGGGTTTCTGCAG 61.328 63.158 7.63 7.63 43.73 4.41
102 103 2.281484 GCGGACTGGGTTTCTGCA 60.281 61.111 0.00 0.00 43.73 4.41
103 104 2.281484 TGCGGACTGGGTTTCTGC 60.281 61.111 0.00 0.00 44.42 4.26
104 105 1.672356 CCTGCGGACTGGGTTTCTG 60.672 63.158 0.00 0.00 0.00 3.02
105 106 1.415672 TTCCTGCGGACTGGGTTTCT 61.416 55.000 0.00 0.00 35.65 2.52
106 107 1.072505 TTCCTGCGGACTGGGTTTC 59.927 57.895 0.00 0.00 35.65 2.78
107 108 1.228154 GTTCCTGCGGACTGGGTTT 60.228 57.895 0.00 0.00 35.65 3.27
108 109 2.113243 GAGTTCCTGCGGACTGGGTT 62.113 60.000 0.00 0.00 35.65 4.11
109 110 2.526873 AGTTCCTGCGGACTGGGT 60.527 61.111 0.00 0.00 35.65 4.51
110 111 2.266055 GAGTTCCTGCGGACTGGG 59.734 66.667 0.00 0.00 35.65 4.45
111 112 2.266055 GGAGTTCCTGCGGACTGG 59.734 66.667 0.00 0.00 36.26 4.00
112 113 2.125912 CGGAGTTCCTGCGGACTG 60.126 66.667 0.00 0.00 41.42 3.51
117 118 3.382832 ACCTCCGGAGTTCCTGCG 61.383 66.667 29.25 14.74 44.57 5.18
118 119 2.266055 CACCTCCGGAGTTCCTGC 59.734 66.667 29.25 0.00 0.00 4.85
119 120 2.266055 GCACCTCCGGAGTTCCTG 59.734 66.667 29.25 18.43 0.00 3.86
120 121 3.003763 GGCACCTCCGGAGTTCCT 61.004 66.667 29.25 6.55 0.00 3.36
121 122 3.003763 AGGCACCTCCGGAGTTCC 61.004 66.667 29.25 24.10 40.77 3.62
122 123 1.617947 ATCAGGCACCTCCGGAGTTC 61.618 60.000 29.25 16.92 42.31 3.01
123 124 1.201429 AATCAGGCACCTCCGGAGTT 61.201 55.000 29.25 14.18 42.31 3.01
124 125 1.201429 AAATCAGGCACCTCCGGAGT 61.201 55.000 29.25 15.06 42.31 3.85
125 126 0.745845 CAAATCAGGCACCTCCGGAG 60.746 60.000 25.36 25.36 42.31 4.63
126 127 1.299648 CAAATCAGGCACCTCCGGA 59.700 57.895 2.93 2.93 43.19 5.14
127 128 1.750399 CCAAATCAGGCACCTCCGG 60.750 63.158 0.00 0.00 40.77 5.14
128 129 3.909662 CCAAATCAGGCACCTCCG 58.090 61.111 0.00 0.00 40.77 4.63
136 137 2.037687 TGCCAGGGCCAAATCAGG 59.962 61.111 6.18 0.00 41.09 3.86
137 138 2.056223 CCTGCCAGGGCCAAATCAG 61.056 63.158 6.18 7.20 41.09 2.90
138 139 2.037687 CCTGCCAGGGCCAAATCA 59.962 61.111 6.18 0.00 41.09 2.57
147 148 2.123982 GCCTTCATCCCTGCCAGG 60.124 66.667 2.91 2.91 34.30 4.45
148 149 2.515523 CGCCTTCATCCCTGCCAG 60.516 66.667 0.00 0.00 0.00 4.85
149 150 3.329542 GACGCCTTCATCCCTGCCA 62.330 63.158 0.00 0.00 0.00 4.92
150 151 2.514824 GACGCCTTCATCCCTGCC 60.515 66.667 0.00 0.00 0.00 4.85
151 152 2.892425 CGACGCCTTCATCCCTGC 60.892 66.667 0.00 0.00 0.00 4.85
152 153 1.519455 GTCGACGCCTTCATCCCTG 60.519 63.158 0.00 0.00 0.00 4.45
153 154 2.893398 GTCGACGCCTTCATCCCT 59.107 61.111 0.00 0.00 0.00 4.20
154 155 2.582498 CGTCGACGCCTTCATCCC 60.582 66.667 26.59 0.00 0.00 3.85
155 156 1.872679 GACGTCGACGCCTTCATCC 60.873 63.158 35.92 12.16 44.43 3.51
156 157 2.215604 CGACGTCGACGCCTTCATC 61.216 63.158 35.92 23.21 44.43 2.92
157 158 2.202440 CGACGTCGACGCCTTCAT 60.202 61.111 35.92 17.12 44.43 2.57
158 159 4.394078 CCGACGTCGACGCCTTCA 62.394 66.667 37.65 0.00 44.43 3.02
174 175 4.864334 CCAGCTGCCATCGTCCCC 62.864 72.222 8.66 0.00 0.00 4.81
185 186 4.154347 GTCTCCCTCGGCCAGCTG 62.154 72.222 6.78 6.78 0.00 4.24
192 193 2.593725 TATCCGCGTCTCCCTCGG 60.594 66.667 4.92 0.00 44.16 4.63
193 194 1.570347 CTCTATCCGCGTCTCCCTCG 61.570 65.000 4.92 0.00 0.00 4.63
194 195 1.238625 CCTCTATCCGCGTCTCCCTC 61.239 65.000 4.92 0.00 0.00 4.30
195 196 1.228306 CCTCTATCCGCGTCTCCCT 60.228 63.158 4.92 0.00 0.00 4.20
196 197 2.269529 CCCTCTATCCGCGTCTCCC 61.270 68.421 4.92 0.00 0.00 4.30
197 198 1.228184 TCCCTCTATCCGCGTCTCC 60.228 63.158 4.92 0.00 0.00 3.71
198 199 1.858372 GCTCCCTCTATCCGCGTCTC 61.858 65.000 4.92 0.00 0.00 3.36
199 200 1.899534 GCTCCCTCTATCCGCGTCT 60.900 63.158 4.92 0.00 0.00 4.18
200 201 2.136196 CTGCTCCCTCTATCCGCGTC 62.136 65.000 4.92 0.00 0.00 5.19
201 202 2.123854 TGCTCCCTCTATCCGCGT 60.124 61.111 4.92 0.00 0.00 6.01
202 203 2.647875 CTGCTCCCTCTATCCGCG 59.352 66.667 0.00 0.00 0.00 6.46
203 204 2.578714 CCCTGCTCCCTCTATCCGC 61.579 68.421 0.00 0.00 0.00 5.54
204 205 1.910772 CCCCTGCTCCCTCTATCCG 60.911 68.421 0.00 0.00 0.00 4.18
205 206 1.124477 CACCCCTGCTCCCTCTATCC 61.124 65.000 0.00 0.00 0.00 2.59
206 207 1.124477 CCACCCCTGCTCCCTCTATC 61.124 65.000 0.00 0.00 0.00 2.08
207 208 1.074167 CCACCCCTGCTCCCTCTAT 60.074 63.158 0.00 0.00 0.00 1.98
208 209 2.368594 CCACCCCTGCTCCCTCTA 59.631 66.667 0.00 0.00 0.00 2.43
209 210 3.947041 ACCACCCCTGCTCCCTCT 61.947 66.667 0.00 0.00 0.00 3.69
210 211 3.721706 CACCACCCCTGCTCCCTC 61.722 72.222 0.00 0.00 0.00 4.30
236 237 0.109342 CCATATGTGGGCAGAGGACC 59.891 60.000 0.00 0.00 45.44 4.46
237 238 1.131638 TCCATATGTGGGCAGAGGAC 58.868 55.000 8.84 0.00 46.06 3.85
238 239 1.701292 CATCCATATGTGGGCAGAGGA 59.299 52.381 8.84 0.00 46.06 3.71
239 240 1.701292 TCATCCATATGTGGGCAGAGG 59.299 52.381 8.84 0.00 46.06 3.69
240 241 2.371179 ACTCATCCATATGTGGGCAGAG 59.629 50.000 17.61 17.61 46.06 3.35
241 242 2.369860 GACTCATCCATATGTGGGCAGA 59.630 50.000 8.84 3.80 46.06 4.26
242 243 2.775890 GACTCATCCATATGTGGGCAG 58.224 52.381 8.84 4.89 46.06 4.85
243 244 1.070601 CGACTCATCCATATGTGGGCA 59.929 52.381 8.84 0.00 46.06 5.36
244 245 1.609061 CCGACTCATCCATATGTGGGC 60.609 57.143 8.84 0.00 46.06 5.36
245 246 1.609061 GCCGACTCATCCATATGTGGG 60.609 57.143 8.84 0.00 46.06 4.61
247 248 1.345741 AGGCCGACTCATCCATATGTG 59.654 52.381 0.00 0.00 34.50 3.21
248 249 1.722034 AGGCCGACTCATCCATATGT 58.278 50.000 0.00 0.00 34.50 2.29
249 250 2.420642 CAAGGCCGACTCATCCATATG 58.579 52.381 0.00 0.00 0.00 1.78
250 251 1.271054 GCAAGGCCGACTCATCCATAT 60.271 52.381 0.00 0.00 0.00 1.78
251 252 0.106708 GCAAGGCCGACTCATCCATA 59.893 55.000 0.00 0.00 0.00 2.74
252 253 1.153086 GCAAGGCCGACTCATCCAT 60.153 57.895 0.00 0.00 0.00 3.41
253 254 2.268920 GCAAGGCCGACTCATCCA 59.731 61.111 0.00 0.00 0.00 3.41
254 255 2.892425 CGCAAGGCCGACTCATCC 60.892 66.667 0.00 0.00 0.00 3.51
297 298 3.723348 GAGAAACACCGCCGCCAC 61.723 66.667 0.00 0.00 0.00 5.01
298 299 2.951475 AAAGAGAAACACCGCCGCCA 62.951 55.000 0.00 0.00 0.00 5.69
299 300 1.792118 AAAAGAGAAACACCGCCGCC 61.792 55.000 0.00 0.00 0.00 6.13
300 301 0.030235 AAAAAGAGAAACACCGCCGC 59.970 50.000 0.00 0.00 0.00 6.53
394 397 6.959639 TTGGAGAAAGCTTGTTGAATTACT 57.040 33.333 0.00 0.00 0.00 2.24
395 398 7.327032 GTCATTGGAGAAAGCTTGTTGAATTAC 59.673 37.037 0.00 0.00 0.00 1.89
396 399 7.014134 TGTCATTGGAGAAAGCTTGTTGAATTA 59.986 33.333 0.00 0.00 0.00 1.40
397 400 6.183360 TGTCATTGGAGAAAGCTTGTTGAATT 60.183 34.615 0.00 0.00 0.00 2.17
398 401 5.302568 TGTCATTGGAGAAAGCTTGTTGAAT 59.697 36.000 0.00 0.00 0.00 2.57
399 402 4.644234 TGTCATTGGAGAAAGCTTGTTGAA 59.356 37.500 0.00 0.00 0.00 2.69
443 446 9.349713 AGGAAAATATGCGAATATACAGGAAAA 57.650 29.630 0.00 0.00 0.00 2.29
505 508 3.125658 GCAACGAAGCTTATTTCCGGTAA 59.874 43.478 0.00 0.00 0.00 2.85
519 522 3.757745 ATATTTCCAACCGCAACGAAG 57.242 42.857 0.00 0.00 0.00 3.79
543 557 7.531716 CATGCAATTTGCTTCCATACAAAAAT 58.468 30.769 21.19 0.16 45.31 1.82
544 558 6.568081 GCATGCAATTTGCTTCCATACAAAAA 60.568 34.615 21.19 0.00 45.31 1.94
546 560 4.392445 GCATGCAATTTGCTTCCATACAAA 59.608 37.500 21.19 0.00 45.31 2.83
548 562 3.523547 GCATGCAATTTGCTTCCATACA 58.476 40.909 21.19 0.00 45.31 2.29
550 564 2.166050 ACGCATGCAATTTGCTTCCATA 59.834 40.909 21.19 1.23 45.31 2.74
551 565 1.066716 ACGCATGCAATTTGCTTCCAT 60.067 42.857 21.19 4.67 45.31 3.41
552 566 0.317799 ACGCATGCAATTTGCTTCCA 59.682 45.000 21.19 2.34 45.31 3.53
553 567 0.717224 CACGCATGCAATTTGCTTCC 59.283 50.000 21.19 5.59 45.31 3.46
554 568 1.700523 TCACGCATGCAATTTGCTTC 58.299 45.000 21.19 9.74 45.31 3.86
555 569 2.151881 TTCACGCATGCAATTTGCTT 57.848 40.000 21.19 12.91 45.31 3.91
556 570 2.063266 CTTTCACGCATGCAATTTGCT 58.937 42.857 21.19 5.37 45.31 3.91
557 571 1.462869 GCTTTCACGCATGCAATTTGC 60.463 47.619 19.57 14.49 45.29 3.68
558 572 1.793532 TGCTTTCACGCATGCAATTTG 59.206 42.857 19.57 8.78 34.44 2.32
559 573 2.151881 TGCTTTCACGCATGCAATTT 57.848 40.000 19.57 0.00 34.44 1.82
560 574 2.151881 TTGCTTTCACGCATGCAATT 57.848 40.000 19.57 0.00 39.98 2.32
561 575 2.151881 TTTGCTTTCACGCATGCAAT 57.848 40.000 19.57 1.32 43.53 3.56
562 576 2.151881 ATTTGCTTTCACGCATGCAA 57.848 40.000 19.57 1.00 42.60 4.08
563 577 1.793532 CAATTTGCTTTCACGCATGCA 59.206 42.857 19.57 0.00 40.04 3.96
564 578 1.462869 GCAATTTGCTTTCACGCATGC 60.463 47.619 14.11 7.91 40.96 4.06
565 579 1.793532 TGCAATTTGCTTTCACGCATG 59.206 42.857 21.19 0.00 45.31 4.06
566 580 2.151881 TGCAATTTGCTTTCACGCAT 57.848 40.000 21.19 0.00 45.31 4.73
567 581 1.793532 CATGCAATTTGCTTTCACGCA 59.206 42.857 21.19 0.00 45.31 5.24
568 582 2.060284 TCATGCAATTTGCTTTCACGC 58.940 42.857 21.19 0.00 45.31 5.34
569 583 2.664568 CCTCATGCAATTTGCTTTCACG 59.335 45.455 21.19 4.78 45.31 4.35
570 584 2.414138 GCCTCATGCAATTTGCTTTCAC 59.586 45.455 21.19 4.41 45.31 3.18
571 585 2.613474 GGCCTCATGCAATTTGCTTTCA 60.613 45.455 21.19 2.34 45.31 2.69
572 586 2.004733 GGCCTCATGCAATTTGCTTTC 58.995 47.619 21.19 5.74 45.31 2.62
573 587 1.626825 AGGCCTCATGCAATTTGCTTT 59.373 42.857 21.19 7.19 45.31 3.51
615 629 7.792032 TGTTTCCTGATAACTACTCCCATAAG 58.208 38.462 0.00 0.00 0.00 1.73
642 683 7.767659 AGACAATTATTTAGGAACGGAGGTAAC 59.232 37.037 0.00 0.00 0.00 2.50
644 685 7.427989 AGACAATTATTTAGGAACGGAGGTA 57.572 36.000 0.00 0.00 0.00 3.08
646 687 7.553044 AGAAAGACAATTATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
647 688 8.494016 AGAAAGACAATTATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
648 689 9.595823 CTAGAAAGACAATTATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
649 690 9.595823 TCTAGAAAGACAATTATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
673 714 9.355215 CGTATGTAGTCACTTGTTAAAATCTCT 57.645 33.333 0.00 0.00 0.00 3.10
677 718 8.440833 GCTTCGTATGTAGTCACTTGTTAAAAT 58.559 33.333 0.00 0.00 0.00 1.82
682 723 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
683 724 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
684 725 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
685 726 6.649141 TCATTTTGCTTCGTATGTAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
686 727 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
688 729 6.090763 CACTCATTTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
689 730 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
690 731 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
693 734 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
694 735 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
695 736 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
696 737 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
697 738 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
698 739 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
699 740 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
711 752 8.764524 AGACATGTTTTAGAGTGTAGATTCAC 57.235 34.615 0.00 0.00 38.46 3.18
712 753 9.856488 GTAGACATGTTTTAGAGTGTAGATTCA 57.144 33.333 0.00 0.00 0.00 2.57
713 754 9.856488 TGTAGACATGTTTTAGAGTGTAGATTC 57.144 33.333 0.00 0.00 0.00 2.52
719 760 9.587772 GATGTATGTAGACATGTTTTAGAGTGT 57.412 33.333 0.00 0.00 40.18 3.55
720 761 9.035607 GGATGTATGTAGACATGTTTTAGAGTG 57.964 37.037 0.00 0.00 40.18 3.51
722 763 7.921214 ACGGATGTATGTAGACATGTTTTAGAG 59.079 37.037 0.00 0.00 40.18 2.43
723 764 7.778083 ACGGATGTATGTAGACATGTTTTAGA 58.222 34.615 0.00 0.00 40.18 2.10
740 781 5.361571 TCTTTCTAGCCAACATACGGATGTA 59.638 40.000 15.10 0.00 45.93 2.29
742 783 4.508124 GTCTTTCTAGCCAACATACGGATG 59.492 45.833 5.94 5.94 39.16 3.51
745 786 3.857052 TGTCTTTCTAGCCAACATACGG 58.143 45.455 0.00 0.00 0.00 4.02
746 787 6.422776 AATTGTCTTTCTAGCCAACATACG 57.577 37.500 0.00 0.00 0.00 3.06
750 791 9.733556 TCTAAATAATTGTCTTTCTAGCCAACA 57.266 29.630 0.00 0.00 0.00 3.33
754 795 9.704098 CGTTTCTAAATAATTGTCTTTCTAGCC 57.296 33.333 0.00 0.00 0.00 3.93
755 796 9.704098 CCGTTTCTAAATAATTGTCTTTCTAGC 57.296 33.333 0.00 0.00 0.00 3.42
758 799 8.947115 CCTCCGTTTCTAAATAATTGTCTTTCT 58.053 33.333 0.00 0.00 0.00 2.52
759 800 8.182227 CCCTCCGTTTCTAAATAATTGTCTTTC 58.818 37.037 0.00 0.00 0.00 2.62
760 801 7.886446 TCCCTCCGTTTCTAAATAATTGTCTTT 59.114 33.333 0.00 0.00 0.00 2.52
761 802 7.399634 TCCCTCCGTTTCTAAATAATTGTCTT 58.600 34.615 0.00 0.00 0.00 3.01
762 803 6.954232 TCCCTCCGTTTCTAAATAATTGTCT 58.046 36.000 0.00 0.00 0.00 3.41
763 804 6.822170 ACTCCCTCCGTTTCTAAATAATTGTC 59.178 38.462 0.00 0.00 0.00 3.18
764 805 6.718294 ACTCCCTCCGTTTCTAAATAATTGT 58.282 36.000 0.00 0.00 0.00 2.71
765 806 7.985752 ACTACTCCCTCCGTTTCTAAATAATTG 59.014 37.037 0.00 0.00 0.00 2.32
766 807 8.087303 ACTACTCCCTCCGTTTCTAAATAATT 57.913 34.615 0.00 0.00 0.00 1.40
767 808 7.672122 ACTACTCCCTCCGTTTCTAAATAAT 57.328 36.000 0.00 0.00 0.00 1.28
768 809 7.178983 TGAACTACTCCCTCCGTTTCTAAATAA 59.821 37.037 0.00 0.00 0.00 1.40
769 810 6.664816 TGAACTACTCCCTCCGTTTCTAAATA 59.335 38.462 0.00 0.00 0.00 1.40
770 811 5.482878 TGAACTACTCCCTCCGTTTCTAAAT 59.517 40.000 0.00 0.00 0.00 1.40
771 812 4.834496 TGAACTACTCCCTCCGTTTCTAAA 59.166 41.667 0.00 0.00 0.00 1.85
772 813 4.410099 TGAACTACTCCCTCCGTTTCTAA 58.590 43.478 0.00 0.00 0.00 2.10
773 814 4.038271 TGAACTACTCCCTCCGTTTCTA 57.962 45.455 0.00 0.00 0.00 2.10
774 815 2.885616 TGAACTACTCCCTCCGTTTCT 58.114 47.619 0.00 0.00 0.00 2.52
775 816 3.672767 TTGAACTACTCCCTCCGTTTC 57.327 47.619 0.00 0.00 0.00 2.78
776 817 5.952347 ATATTGAACTACTCCCTCCGTTT 57.048 39.130 0.00 0.00 0.00 3.60
777 818 5.661759 AGAATATTGAACTACTCCCTCCGTT 59.338 40.000 0.00 0.00 0.00 4.44
778 819 5.209659 AGAATATTGAACTACTCCCTCCGT 58.790 41.667 0.00 0.00 0.00 4.69
779 820 5.279056 GGAGAATATTGAACTACTCCCTCCG 60.279 48.000 7.19 0.00 38.23 4.63
780 821 5.602978 TGGAGAATATTGAACTACTCCCTCC 59.397 44.000 13.35 9.66 41.93 4.30
781 822 6.732896 TGGAGAATATTGAACTACTCCCTC 57.267 41.667 13.35 1.93 41.93 4.30
782 823 6.465035 GCATGGAGAATATTGAACTACTCCCT 60.465 42.308 13.35 4.21 41.93 4.20
783 824 5.703130 GCATGGAGAATATTGAACTACTCCC 59.297 44.000 13.35 0.00 41.93 4.30
784 825 6.291377 TGCATGGAGAATATTGAACTACTCC 58.709 40.000 10.35 10.35 42.64 3.85
785 826 7.792374 TTGCATGGAGAATATTGAACTACTC 57.208 36.000 0.00 0.00 0.00 2.59
786 827 7.831193 AGTTTGCATGGAGAATATTGAACTACT 59.169 33.333 0.00 0.00 0.00 2.57
787 828 7.989826 AGTTTGCATGGAGAATATTGAACTAC 58.010 34.615 0.00 0.00 0.00 2.73
792 833 9.679661 TTAGTTAGTTTGCATGGAGAATATTGA 57.320 29.630 0.00 0.00 0.00 2.57
837 878 1.574702 GCAAGCGCTACGAAAACCCT 61.575 55.000 12.05 0.00 34.30 4.34
866 907 0.426022 AAGTGGGGAGGGGTAGGATT 59.574 55.000 0.00 0.00 0.00 3.01
867 908 0.029989 GAAGTGGGGAGGGGTAGGAT 60.030 60.000 0.00 0.00 0.00 3.24
868 909 1.160289 AGAAGTGGGGAGGGGTAGGA 61.160 60.000 0.00 0.00 0.00 2.94
869 910 0.640495 TAGAAGTGGGGAGGGGTAGG 59.360 60.000 0.00 0.00 0.00 3.18
937 979 2.162208 GGTAGGATTCGTGTACGTGACA 59.838 50.000 0.00 0.00 40.80 3.58
947 989 0.831307 GCCCAAGAGGTAGGATTCGT 59.169 55.000 0.00 0.00 38.26 3.85
950 992 1.123928 CTCGCCCAAGAGGTAGGATT 58.876 55.000 0.00 0.00 38.26 3.01
1032 1074 1.215647 GACCTCGAGCGTGATGGTT 59.784 57.895 6.99 0.00 0.00 3.67
1068 1110 3.006752 GGATTTTGGCCTTGACATTGTCA 59.993 43.478 15.41 15.41 41.09 3.58
1104 1146 2.947448 GCAAAGGGCAAATCTACCTG 57.053 50.000 0.00 0.00 43.97 4.00
1116 1158 4.303257 GGGAGACGAAGCAAAGGG 57.697 61.111 0.00 0.00 0.00 3.95
1135 1177 2.969238 GCCGGCACATCGATCAGG 60.969 66.667 24.80 0.00 0.00 3.86
1168 1210 1.467342 GTAAACGCAGCCGGAGAAATT 59.533 47.619 5.05 0.00 39.22 1.82
1180 1222 4.126437 AGCATATGCATGTAGTAAACGCA 58.874 39.130 28.62 0.00 45.16 5.24
1206 1248 6.019801 CGACAAATATGTACTAGTGTTCAGCC 60.020 42.308 5.39 0.00 40.74 4.85
1213 1255 6.020599 GCACTCACGACAAATATGTACTAGTG 60.021 42.308 5.39 0.00 40.74 2.74
1217 1261 4.816392 TGCACTCACGACAAATATGTACT 58.184 39.130 0.00 0.00 40.74 2.73
1309 1353 2.296471 ACTCCTTCTGGACGTTGTAGTG 59.704 50.000 0.00 0.00 37.46 2.74
1485 1529 3.090312 GTGCGCACGTATATAAGCATG 57.910 47.619 26.77 0.00 36.96 4.06
1503 1547 2.096565 CACAGCAACAGAATCAGTCGTG 60.097 50.000 0.00 0.00 0.00 4.35
1504 1548 2.138320 CACAGCAACAGAATCAGTCGT 58.862 47.619 0.00 0.00 0.00 4.34
1630 1678 7.878547 TCAAGGCATGAACACATATGATAAA 57.121 32.000 10.38 0.00 34.30 1.40
1638 1686 3.959293 TCAGATCAAGGCATGAACACAT 58.041 40.909 0.00 0.00 42.54 3.21
1645 1693 4.449131 ACAGTACATCAGATCAAGGCATG 58.551 43.478 0.00 0.00 0.00 4.06
1711 1759 1.520342 AGAATTGCTCGCTCGCTCC 60.520 57.895 0.00 0.00 0.00 4.70
1731 1779 1.203052 ACGAAAGGATAGCCGACGAAA 59.797 47.619 17.03 0.00 39.96 3.46
1801 1849 4.832248 TCAACTTCAAACTCTGACACAGT 58.168 39.130 0.00 0.00 32.21 3.55
1803 1851 4.832248 ACTCAACTTCAAACTCTGACACA 58.168 39.130 0.00 0.00 32.21 3.72
1811 1859 7.659186 ACTAACGATAGACTCAACTTCAAACT 58.341 34.615 6.73 0.00 41.38 2.66
1827 1902 8.502105 TGAACTTGACTATGAGACTAACGATA 57.498 34.615 0.00 0.00 0.00 2.92
1837 1912 9.591792 TTACATTGAGATGAACTTGACTATGAG 57.408 33.333 0.00 0.00 36.73 2.90
1853 1928 4.518970 GGGCTTTGACACTTTACATTGAGA 59.481 41.667 0.00 0.00 0.00 3.27
1855 1930 3.252215 CGGGCTTTGACACTTTACATTGA 59.748 43.478 0.00 0.00 0.00 2.57
1860 1935 1.886886 TCCGGGCTTTGACACTTTAC 58.113 50.000 0.00 0.00 0.00 2.01
1865 1940 5.570234 TTAAAATATCCGGGCTTTGACAC 57.430 39.130 0.00 0.00 0.00 3.67
1884 1959 2.871096 ACCAGGTTGCGAAGGATTAA 57.129 45.000 0.00 0.00 0.00 1.40
1902 1977 6.132791 ACGGAGAAGAAAAAGAAGGAAAAC 57.867 37.500 0.00 0.00 0.00 2.43
1907 1982 7.871853 TGATAAAACGGAGAAGAAAAAGAAGG 58.128 34.615 0.00 0.00 0.00 3.46
1923 2003 5.550981 CGTCAGAAGGTGAATGATAAAACG 58.449 41.667 0.00 0.00 36.74 3.60
1957 2037 9.458374 CAAATTTAACTCGGATTTTGTTGTAGT 57.542 29.630 0.00 0.00 0.00 2.73
2022 2102 4.477975 CGCGAGTCAGGACCCGTC 62.478 72.222 0.00 0.00 34.91 4.79
2086 2168 2.361438 ACCTCTATTATATAGCGCGGGC 59.639 50.000 17.92 17.92 40.37 6.13
2101 2186 4.791069 GTCCCGGCCCCACCTCTA 62.791 72.222 0.00 0.00 35.61 2.43
2117 2205 0.742505 TTCAACCTCGTGAGACGTGT 59.257 50.000 0.00 0.00 43.14 4.49
2122 2210 0.318699 CAGCGTTCAACCTCGTGAGA 60.319 55.000 0.00 0.00 39.12 3.27
2136 2224 4.514585 TGGGGTTTGTGGCAGCGT 62.515 61.111 0.00 0.00 0.00 5.07
2236 2328 1.377202 ATGGTGATGTGGTGACGGC 60.377 57.895 0.00 0.00 0.00 5.68
2240 2332 0.036483 CGGTCATGGTGATGTGGTGA 60.036 55.000 0.00 0.00 0.00 4.02
2262 2355 1.372748 CGGATGAGCTCGATCCAGC 60.373 63.158 29.05 3.85 39.65 4.85
2443 2543 7.132213 CGCAACTTTTCTTTGAGATGTCTTTA 58.868 34.615 0.00 0.00 0.00 1.85
2481 2581 0.530650 GATCGAGAGGAATGGCGCAA 60.531 55.000 10.83 0.00 0.00 4.85
2482 2582 1.068083 GATCGAGAGGAATGGCGCA 59.932 57.895 10.83 0.00 0.00 6.09
2529 2629 1.206371 CGGGGTAATGTTCTTCGTCCT 59.794 52.381 0.00 0.00 0.00 3.85
2669 2771 4.704833 TCTGCTCCCTTGTGCGCC 62.705 66.667 4.18 0.00 33.71 6.53
2670 2772 3.123620 CTCTGCTCCCTTGTGCGC 61.124 66.667 0.00 0.00 33.71 6.09
2671 2773 2.435586 CCTCTGCTCCCTTGTGCG 60.436 66.667 0.00 0.00 33.71 5.34
2672 2774 1.078567 CTCCTCTGCTCCCTTGTGC 60.079 63.158 0.00 0.00 0.00 4.57
2673 2775 0.536260 CTCTCCTCTGCTCCCTTGTG 59.464 60.000 0.00 0.00 0.00 3.33
2674 2776 1.264045 GCTCTCCTCTGCTCCCTTGT 61.264 60.000 0.00 0.00 0.00 3.16
2675 2777 1.521616 GCTCTCCTCTGCTCCCTTG 59.478 63.158 0.00 0.00 0.00 3.61
2676 2778 1.688884 GGCTCTCCTCTGCTCCCTT 60.689 63.158 0.00 0.00 0.00 3.95
2677 2779 2.042025 GGCTCTCCTCTGCTCCCT 60.042 66.667 0.00 0.00 0.00 4.20
2678 2780 3.160748 GGGCTCTCCTCTGCTCCC 61.161 72.222 0.00 0.00 0.00 4.30
2679 2781 2.042025 AGGGCTCTCCTCTGCTCC 60.042 66.667 0.00 0.00 44.06 4.70
2680 2782 3.092780 GCAGGGCTCTCCTCTGCTC 62.093 68.421 7.87 0.00 46.12 4.26
2681 2783 3.082701 GCAGGGCTCTCCTCTGCT 61.083 66.667 7.87 0.00 46.12 4.24
2682 2784 4.173924 GGCAGGGCTCTCCTCTGC 62.174 72.222 6.63 6.63 46.12 4.26
2683 2785 3.478274 GGGCAGGGCTCTCCTCTG 61.478 72.222 0.00 0.00 46.12 3.35
2684 2786 3.265708 AAGGGCAGGGCTCTCCTCT 62.266 63.158 0.00 0.00 46.12 3.69
2685 2787 2.690510 AAGGGCAGGGCTCTCCTC 60.691 66.667 0.00 0.00 46.12 3.71
2687 2789 4.811364 GCAAGGGCAGGGCTCTCC 62.811 72.222 0.00 0.00 39.10 3.71
2688 2790 4.811364 GGCAAGGGCAGGGCTCTC 62.811 72.222 0.00 0.00 39.10 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.