Multiple sequence alignment - TraesCS6B01G162700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G162700 chr6B 100.000 2273 0 0 1 2273 169171224 169173496 0.000000e+00 4198
1 TraesCS6B01G162700 chr6D 86.407 1258 72 41 736 1970 88831727 88832908 0.000000e+00 1284
2 TraesCS6B01G162700 chr1B 92.734 578 31 3 1 576 119888357 119887789 0.000000e+00 824
3 TraesCS6B01G162700 chr6A 89.744 624 44 14 736 1350 106878129 106878741 0.000000e+00 780
4 TraesCS6B01G162700 chr6A 82.640 841 61 50 1353 2129 106878772 106879591 0.000000e+00 665
5 TraesCS6B01G162700 chr4D 83.732 418 40 16 3 410 181319338 181319737 9.920000e-99 370
6 TraesCS6B01G162700 chr4D 89.286 168 18 0 409 576 181319771 181319938 6.360000e-51 211
7 TraesCS6B01G162700 chr7B 88.824 170 19 0 407 576 123746989 123746820 2.290000e-50 209
8 TraesCS6B01G162700 chr7B 87.079 178 16 6 3 177 123747979 123747806 6.410000e-46 195
9 TraesCS6B01G162700 chr7B 85.271 129 19 0 1000 1128 605872268 605872396 1.420000e-27 134
10 TraesCS6B01G162700 chr7B 84.444 135 19 2 1000 1133 605112232 605112099 5.090000e-27 132
11 TraesCS6B01G162700 chr7D 86.667 135 16 2 1000 1133 557348245 557348112 5.060000e-32 148
12 TraesCS6B01G162700 chr7A 86.667 135 16 2 1000 1133 643298290 643298423 5.060000e-32 148
13 TraesCS6B01G162700 chrUn 92.105 76 6 0 1058 1133 86733754 86733679 8.590000e-20 108
14 TraesCS6B01G162700 chr2D 89.286 84 7 2 1029 1111 587111797 587111715 1.110000e-18 104
15 TraesCS6B01G162700 chr2B 89.744 78 7 1 1035 1111 708863243 708863166 5.170000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G162700 chr6B 169171224 169173496 2272 False 4198.0 4198 100.0000 1 2273 1 chr6B.!!$F1 2272
1 TraesCS6B01G162700 chr6D 88831727 88832908 1181 False 1284.0 1284 86.4070 736 1970 1 chr6D.!!$F1 1234
2 TraesCS6B01G162700 chr1B 119887789 119888357 568 True 824.0 824 92.7340 1 576 1 chr1B.!!$R1 575
3 TraesCS6B01G162700 chr6A 106878129 106879591 1462 False 722.5 780 86.1920 736 2129 2 chr6A.!!$F1 1393
4 TraesCS6B01G162700 chr4D 181319338 181319938 600 False 290.5 370 86.5090 3 576 2 chr4D.!!$F1 573
5 TraesCS6B01G162700 chr7B 123746820 123747979 1159 True 202.0 209 87.9515 3 576 2 chr7B.!!$R2 573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
675 1275 0.03759 CCCCCGGTTTGACAGAATGA 59.962 55.0 0.0 0.0 39.69 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2216 2938 0.035458 GGTTGGTGAGGACTGTGGAG 59.965 60.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.669760 GACAATGTGGAACGCGGGA 60.670 57.895 12.47 0.00 45.01 5.14
155 157 4.099266 CCAGTGACACTCCATTTTTGGAAA 59.901 41.667 4.74 0.00 37.55 3.13
196 747 1.536922 CGATCATGAACTCCCTGACCG 60.537 57.143 0.00 0.00 0.00 4.79
197 748 0.179000 ATCATGAACTCCCTGACCGC 59.821 55.000 0.00 0.00 0.00 5.68
198 749 1.450312 CATGAACTCCCTGACCGCC 60.450 63.158 0.00 0.00 0.00 6.13
199 750 1.613630 ATGAACTCCCTGACCGCCT 60.614 57.895 0.00 0.00 0.00 5.52
200 751 1.903877 ATGAACTCCCTGACCGCCTG 61.904 60.000 0.00 0.00 0.00 4.85
201 752 2.203788 AACTCCCTGACCGCCTGA 60.204 61.111 0.00 0.00 0.00 3.86
202 753 2.508586 GAACTCCCTGACCGCCTGAC 62.509 65.000 0.00 0.00 0.00 3.51
203 754 3.775654 CTCCCTGACCGCCTGACC 61.776 72.222 0.00 0.00 0.00 4.02
282 840 2.494918 GTCAGGTATGCGGTCGCT 59.505 61.111 16.36 4.95 42.51 4.93
586 1186 3.487078 TGGCACAGGGGTAGTACTT 57.513 52.632 0.00 0.00 0.00 2.24
587 1187 1.737199 TGGCACAGGGGTAGTACTTT 58.263 50.000 0.00 0.00 0.00 2.66
588 1188 2.059490 TGGCACAGGGGTAGTACTTTT 58.941 47.619 0.00 0.00 0.00 2.27
589 1189 3.249752 TGGCACAGGGGTAGTACTTTTA 58.750 45.455 0.00 0.00 0.00 1.52
590 1190 3.262405 TGGCACAGGGGTAGTACTTTTAG 59.738 47.826 0.00 0.00 0.00 1.85
591 1191 3.268330 GCACAGGGGTAGTACTTTTAGC 58.732 50.000 0.00 0.00 0.00 3.09
592 1192 3.518590 CACAGGGGTAGTACTTTTAGCG 58.481 50.000 0.00 0.00 0.00 4.26
593 1193 3.194116 CACAGGGGTAGTACTTTTAGCGA 59.806 47.826 0.00 0.00 0.00 4.93
594 1194 3.446516 ACAGGGGTAGTACTTTTAGCGAG 59.553 47.826 0.00 0.00 0.00 5.03
595 1195 3.029570 AGGGGTAGTACTTTTAGCGAGG 58.970 50.000 0.00 0.00 0.00 4.63
596 1196 3.026694 GGGGTAGTACTTTTAGCGAGGA 58.973 50.000 0.00 0.00 0.00 3.71
597 1197 3.067883 GGGGTAGTACTTTTAGCGAGGAG 59.932 52.174 0.00 0.00 0.00 3.69
598 1198 3.950395 GGGTAGTACTTTTAGCGAGGAGA 59.050 47.826 0.00 0.00 0.00 3.71
599 1199 4.036616 GGGTAGTACTTTTAGCGAGGAGAG 59.963 50.000 0.00 0.00 0.00 3.20
600 1200 3.786516 AGTACTTTTAGCGAGGAGAGC 57.213 47.619 0.00 0.00 0.00 4.09
601 1201 2.097791 AGTACTTTTAGCGAGGAGAGCG 59.902 50.000 0.00 0.00 40.04 5.03
602 1202 0.889306 ACTTTTAGCGAGGAGAGCGT 59.111 50.000 0.00 0.00 40.04 5.07
603 1203 1.272781 CTTTTAGCGAGGAGAGCGTG 58.727 55.000 0.00 0.00 40.04 5.34
604 1204 0.885879 TTTTAGCGAGGAGAGCGTGA 59.114 50.000 0.00 0.00 40.04 4.35
605 1205 0.170561 TTTAGCGAGGAGAGCGTGAC 59.829 55.000 0.00 0.00 40.04 3.67
606 1206 1.978712 TTAGCGAGGAGAGCGTGACG 61.979 60.000 0.00 0.00 40.04 4.35
607 1207 4.104417 GCGAGGAGAGCGTGACGT 62.104 66.667 6.91 0.00 0.00 4.34
608 1208 2.202362 CGAGGAGAGCGTGACGTG 60.202 66.667 6.91 0.00 0.00 4.49
609 1209 2.179517 GAGGAGAGCGTGACGTGG 59.820 66.667 6.91 0.00 0.00 4.94
610 1210 3.973267 GAGGAGAGCGTGACGTGGC 62.973 68.421 6.91 0.00 0.00 5.01
611 1211 4.057428 GGAGAGCGTGACGTGGCT 62.057 66.667 6.91 0.00 43.42 4.75
612 1212 2.697761 GGAGAGCGTGACGTGGCTA 61.698 63.158 6.91 0.00 40.16 3.93
613 1213 1.226435 GAGAGCGTGACGTGGCTAG 60.226 63.158 6.91 0.00 40.16 3.42
614 1214 2.202623 GAGCGTGACGTGGCTAGG 60.203 66.667 6.91 0.00 40.16 3.02
615 1215 3.701604 GAGCGTGACGTGGCTAGGG 62.702 68.421 6.91 0.00 40.16 3.53
616 1216 3.755628 GCGTGACGTGGCTAGGGA 61.756 66.667 6.91 0.00 0.00 4.20
617 1217 2.490217 CGTGACGTGGCTAGGGAG 59.510 66.667 0.00 0.00 0.00 4.30
618 1218 2.893398 GTGACGTGGCTAGGGAGG 59.107 66.667 0.00 0.00 0.00 4.30
619 1219 1.681327 GTGACGTGGCTAGGGAGGA 60.681 63.158 0.00 0.00 0.00 3.71
620 1220 1.681327 TGACGTGGCTAGGGAGGAC 60.681 63.158 0.00 0.00 0.00 3.85
621 1221 2.754658 ACGTGGCTAGGGAGGACG 60.755 66.667 0.00 0.00 36.14 4.79
622 1222 3.528370 CGTGGCTAGGGAGGACGG 61.528 72.222 0.00 0.00 0.00 4.79
623 1223 2.363925 GTGGCTAGGGAGGACGGT 60.364 66.667 0.00 0.00 0.00 4.83
624 1224 2.363795 TGGCTAGGGAGGACGGTG 60.364 66.667 0.00 0.00 0.00 4.94
625 1225 2.043248 GGCTAGGGAGGACGGTGA 60.043 66.667 0.00 0.00 0.00 4.02
626 1226 1.684734 GGCTAGGGAGGACGGTGAA 60.685 63.158 0.00 0.00 0.00 3.18
627 1227 1.049289 GGCTAGGGAGGACGGTGAAT 61.049 60.000 0.00 0.00 0.00 2.57
628 1228 0.389757 GCTAGGGAGGACGGTGAATC 59.610 60.000 0.00 0.00 0.00 2.52
629 1229 1.041437 CTAGGGAGGACGGTGAATCC 58.959 60.000 0.00 0.00 36.38 3.01
647 1247 3.510846 GCCTCCGCGAGTCTTAGA 58.489 61.111 8.23 0.00 0.00 2.10
648 1248 1.357334 GCCTCCGCGAGTCTTAGAG 59.643 63.158 8.23 3.09 0.00 2.43
649 1249 1.357334 CCTCCGCGAGTCTTAGAGC 59.643 63.158 8.23 0.00 0.00 4.09
650 1250 1.098712 CCTCCGCGAGTCTTAGAGCT 61.099 60.000 8.23 0.00 0.00 4.09
651 1251 1.584175 CTCCGCGAGTCTTAGAGCTA 58.416 55.000 8.23 0.00 0.00 3.32
652 1252 1.941294 CTCCGCGAGTCTTAGAGCTAA 59.059 52.381 8.23 0.00 0.00 3.09
653 1253 1.669779 TCCGCGAGTCTTAGAGCTAAC 59.330 52.381 8.23 0.00 0.00 2.34
654 1254 1.400846 CCGCGAGTCTTAGAGCTAACA 59.599 52.381 8.23 0.00 0.00 2.41
655 1255 2.539953 CCGCGAGTCTTAGAGCTAACAG 60.540 54.545 8.23 0.00 0.00 3.16
656 1256 2.456010 GCGAGTCTTAGAGCTAACAGC 58.544 52.381 0.00 0.00 42.84 4.40
657 1257 2.796735 GCGAGTCTTAGAGCTAACAGCC 60.797 54.545 0.00 0.00 43.77 4.85
658 1258 2.223618 CGAGTCTTAGAGCTAACAGCCC 60.224 54.545 0.00 0.00 43.77 5.19
659 1259 2.101750 GAGTCTTAGAGCTAACAGCCCC 59.898 54.545 0.00 0.00 43.77 5.80
660 1260 1.139256 GTCTTAGAGCTAACAGCCCCC 59.861 57.143 0.00 0.00 43.77 5.40
661 1261 0.105039 CTTAGAGCTAACAGCCCCCG 59.895 60.000 0.00 0.00 43.77 5.73
662 1262 1.335132 TTAGAGCTAACAGCCCCCGG 61.335 60.000 0.00 0.00 43.77 5.73
663 1263 2.525284 TAGAGCTAACAGCCCCCGGT 62.525 60.000 0.00 0.00 43.77 5.28
664 1264 2.933834 AGCTAACAGCCCCCGGTT 60.934 61.111 0.00 0.00 43.77 4.44
665 1265 2.035155 GCTAACAGCCCCCGGTTT 59.965 61.111 0.00 0.00 34.48 3.27
666 1266 2.340328 GCTAACAGCCCCCGGTTTG 61.340 63.158 0.00 0.00 34.48 2.93
667 1267 1.377229 CTAACAGCCCCCGGTTTGA 59.623 57.895 0.00 0.00 31.76 2.69
668 1268 0.958876 CTAACAGCCCCCGGTTTGAC 60.959 60.000 0.00 0.00 31.76 3.18
669 1269 1.706995 TAACAGCCCCCGGTTTGACA 61.707 55.000 0.00 0.00 31.76 3.58
670 1270 2.672996 CAGCCCCCGGTTTGACAG 60.673 66.667 0.00 0.00 0.00 3.51
671 1271 2.852075 AGCCCCCGGTTTGACAGA 60.852 61.111 0.00 0.00 0.00 3.41
672 1272 2.114411 GCCCCCGGTTTGACAGAA 59.886 61.111 0.00 0.00 0.00 3.02
673 1273 1.304134 GCCCCCGGTTTGACAGAAT 60.304 57.895 0.00 0.00 0.00 2.40
674 1274 1.595093 GCCCCCGGTTTGACAGAATG 61.595 60.000 0.00 0.00 46.00 2.67
675 1275 0.037590 CCCCCGGTTTGACAGAATGA 59.962 55.000 0.00 0.00 39.69 2.57
676 1276 1.546773 CCCCCGGTTTGACAGAATGAA 60.547 52.381 0.00 0.00 39.69 2.57
677 1277 2.446435 CCCCGGTTTGACAGAATGAAT 58.554 47.619 0.00 0.00 39.69 2.57
678 1278 2.423538 CCCCGGTTTGACAGAATGAATC 59.576 50.000 0.00 0.00 39.69 2.52
679 1279 3.081061 CCCGGTTTGACAGAATGAATCA 58.919 45.455 0.00 0.00 39.69 2.57
680 1280 3.127548 CCCGGTTTGACAGAATGAATCAG 59.872 47.826 0.00 0.00 39.69 2.90
681 1281 3.426695 CCGGTTTGACAGAATGAATCAGC 60.427 47.826 0.00 0.00 39.69 4.26
682 1282 3.438087 CGGTTTGACAGAATGAATCAGCT 59.562 43.478 0.00 0.00 39.69 4.24
683 1283 4.436584 CGGTTTGACAGAATGAATCAGCTC 60.437 45.833 0.00 0.00 39.69 4.09
684 1284 4.142513 GGTTTGACAGAATGAATCAGCTCC 60.143 45.833 0.00 0.00 39.69 4.70
685 1285 3.986996 TGACAGAATGAATCAGCTCCA 57.013 42.857 0.00 0.00 39.69 3.86
686 1286 3.870274 TGACAGAATGAATCAGCTCCAG 58.130 45.455 0.00 0.00 39.69 3.86
687 1287 2.613133 GACAGAATGAATCAGCTCCAGC 59.387 50.000 0.00 0.00 39.69 4.85
688 1288 1.948145 CAGAATGAATCAGCTCCAGCC 59.052 52.381 0.00 0.00 39.77 4.85
689 1289 1.562942 AGAATGAATCAGCTCCAGCCA 59.437 47.619 0.00 0.00 43.38 4.75
690 1290 1.674962 GAATGAATCAGCTCCAGCCAC 59.325 52.381 0.00 0.00 43.38 5.01
691 1291 0.917533 ATGAATCAGCTCCAGCCACT 59.082 50.000 0.00 0.00 43.38 4.00
692 1292 1.571955 TGAATCAGCTCCAGCCACTA 58.428 50.000 0.00 0.00 43.38 2.74
693 1293 1.908619 TGAATCAGCTCCAGCCACTAA 59.091 47.619 0.00 0.00 43.38 2.24
694 1294 2.507058 TGAATCAGCTCCAGCCACTAAT 59.493 45.455 0.00 0.00 43.38 1.73
695 1295 2.926778 ATCAGCTCCAGCCACTAATC 57.073 50.000 0.00 0.00 43.38 1.75
696 1296 1.871418 TCAGCTCCAGCCACTAATCT 58.129 50.000 0.00 0.00 43.38 2.40
697 1297 3.032265 TCAGCTCCAGCCACTAATCTA 57.968 47.619 0.00 0.00 43.38 1.98
698 1298 2.695666 TCAGCTCCAGCCACTAATCTAC 59.304 50.000 0.00 0.00 43.38 2.59
699 1299 1.683917 AGCTCCAGCCACTAATCTACG 59.316 52.381 0.00 0.00 43.38 3.51
700 1300 1.409427 GCTCCAGCCACTAATCTACGT 59.591 52.381 0.00 0.00 34.31 3.57
701 1301 2.159085 GCTCCAGCCACTAATCTACGTT 60.159 50.000 0.00 0.00 34.31 3.99
702 1302 3.679083 GCTCCAGCCACTAATCTACGTTT 60.679 47.826 0.00 0.00 34.31 3.60
703 1303 3.857052 TCCAGCCACTAATCTACGTTTG 58.143 45.455 0.00 0.00 0.00 2.93
704 1304 3.259876 TCCAGCCACTAATCTACGTTTGT 59.740 43.478 0.00 0.00 0.00 2.83
705 1305 3.617263 CCAGCCACTAATCTACGTTTGTC 59.383 47.826 0.00 0.00 0.00 3.18
706 1306 4.242475 CAGCCACTAATCTACGTTTGTCA 58.758 43.478 0.00 0.00 0.00 3.58
707 1307 4.688879 CAGCCACTAATCTACGTTTGTCAA 59.311 41.667 0.00 0.00 0.00 3.18
708 1308 4.689345 AGCCACTAATCTACGTTTGTCAAC 59.311 41.667 0.00 0.00 0.00 3.18
709 1309 4.689345 GCCACTAATCTACGTTTGTCAACT 59.311 41.667 0.00 0.00 0.00 3.16
710 1310 5.178809 GCCACTAATCTACGTTTGTCAACTT 59.821 40.000 0.00 0.00 0.00 2.66
711 1311 6.293244 GCCACTAATCTACGTTTGTCAACTTT 60.293 38.462 0.00 0.00 0.00 2.66
712 1312 7.288672 CCACTAATCTACGTTTGTCAACTTTC 58.711 38.462 0.00 0.00 0.00 2.62
713 1313 7.170998 CCACTAATCTACGTTTGTCAACTTTCT 59.829 37.037 0.00 0.00 0.00 2.52
714 1314 8.548721 CACTAATCTACGTTTGTCAACTTTCTT 58.451 33.333 0.00 0.00 0.00 2.52
715 1315 8.548721 ACTAATCTACGTTTGTCAACTTTCTTG 58.451 33.333 0.00 0.00 0.00 3.02
716 1316 6.920569 ATCTACGTTTGTCAACTTTCTTGT 57.079 33.333 0.00 0.00 0.00 3.16
717 1317 8.428186 AATCTACGTTTGTCAACTTTCTTGTA 57.572 30.769 0.00 0.00 0.00 2.41
718 1318 7.225523 TCTACGTTTGTCAACTTTCTTGTAC 57.774 36.000 0.00 0.00 0.00 2.90
719 1319 5.225899 ACGTTTGTCAACTTTCTTGTACC 57.774 39.130 0.00 0.00 0.00 3.34
720 1320 4.696402 ACGTTTGTCAACTTTCTTGTACCA 59.304 37.500 0.00 0.00 0.00 3.25
721 1321 5.355910 ACGTTTGTCAACTTTCTTGTACCAT 59.644 36.000 0.00 0.00 0.00 3.55
722 1322 6.539464 ACGTTTGTCAACTTTCTTGTACCATA 59.461 34.615 0.00 0.00 0.00 2.74
723 1323 6.849305 CGTTTGTCAACTTTCTTGTACCATAC 59.151 38.462 0.00 0.00 0.00 2.39
724 1324 6.870971 TTGTCAACTTTCTTGTACCATACC 57.129 37.500 0.00 0.00 0.00 2.73
725 1325 5.310451 TGTCAACTTTCTTGTACCATACCC 58.690 41.667 0.00 0.00 0.00 3.69
726 1326 5.072600 TGTCAACTTTCTTGTACCATACCCT 59.927 40.000 0.00 0.00 0.00 4.34
727 1327 5.642491 GTCAACTTTCTTGTACCATACCCTC 59.358 44.000 0.00 0.00 0.00 4.30
728 1328 5.308497 TCAACTTTCTTGTACCATACCCTCA 59.692 40.000 0.00 0.00 0.00 3.86
729 1329 5.836024 ACTTTCTTGTACCATACCCTCAA 57.164 39.130 0.00 0.00 0.00 3.02
730 1330 6.195600 ACTTTCTTGTACCATACCCTCAAA 57.804 37.500 0.00 0.00 0.00 2.69
731 1331 6.607019 ACTTTCTTGTACCATACCCTCAAAA 58.393 36.000 0.00 0.00 0.00 2.44
732 1332 7.064229 ACTTTCTTGTACCATACCCTCAAAAA 58.936 34.615 0.00 0.00 0.00 1.94
758 1360 0.038892 TTCTTGTACCGCCACGTCTC 60.039 55.000 0.00 0.00 0.00 3.36
801 1403 3.283684 CGCCGTCCAAAACCAGCA 61.284 61.111 0.00 0.00 0.00 4.41
901 1505 2.710902 CCCGCAGAGATCACCGACA 61.711 63.158 0.00 0.00 0.00 4.35
935 1542 1.599797 GCAGTAAACCAGGTGCGGT 60.600 57.895 0.00 0.00 42.71 5.68
941 1548 2.902423 AAACCAGGTGCGGTGCAGAA 62.902 55.000 0.00 0.00 40.08 3.02
943 1550 3.052082 CAGGTGCGGTGCAGAAGG 61.052 66.667 0.00 0.00 40.08 3.46
945 1552 2.743928 GGTGCGGTGCAGAAGGAG 60.744 66.667 0.00 0.00 40.08 3.69
946 1553 2.343758 GTGCGGTGCAGAAGGAGA 59.656 61.111 0.00 0.00 40.08 3.71
947 1554 1.739562 GTGCGGTGCAGAAGGAGAG 60.740 63.158 0.00 0.00 40.08 3.20
948 1555 1.908299 TGCGGTGCAGAAGGAGAGA 60.908 57.895 0.00 0.00 33.32 3.10
949 1556 1.260538 TGCGGTGCAGAAGGAGAGAT 61.261 55.000 0.00 0.00 33.32 2.75
950 1557 0.529555 GCGGTGCAGAAGGAGAGATC 60.530 60.000 0.00 0.00 0.00 2.75
951 1558 0.248825 CGGTGCAGAAGGAGAGATCG 60.249 60.000 0.00 0.00 0.00 3.69
952 1559 1.107114 GGTGCAGAAGGAGAGATCGA 58.893 55.000 0.00 0.00 0.00 3.59
953 1560 1.066908 GGTGCAGAAGGAGAGATCGAG 59.933 57.143 0.00 0.00 0.00 4.04
954 1561 2.020720 GTGCAGAAGGAGAGATCGAGA 58.979 52.381 0.00 0.00 0.00 4.04
955 1562 2.033299 GTGCAGAAGGAGAGATCGAGAG 59.967 54.545 0.00 0.00 0.00 3.20
1294 1907 0.176680 TCCTCTTCTCCGCTTCATGC 59.823 55.000 0.00 0.00 38.57 4.06
1299 1912 2.578163 TTCTCCGCTTCATGCCTCCG 62.578 60.000 0.00 0.00 38.78 4.63
1315 1928 2.705220 CGTCGGCACATGAGCATG 59.295 61.111 17.11 8.82 44.15 4.06
1318 1931 2.101575 CGGCACATGAGCATGCAC 59.898 61.111 21.98 15.08 43.93 4.57
1341 1954 1.332997 GTAGCTGATGAATGCCTGTGC 59.667 52.381 0.00 0.00 38.26 4.57
1374 2015 0.036952 TTCGCCAGAGAAAGCAGAGG 60.037 55.000 0.00 0.00 0.00 3.69
1554 2196 3.285484 CAAGCAGGAATCATGGCTTAGT 58.715 45.455 4.60 0.00 44.17 2.24
1562 2204 6.151648 CAGGAATCATGGCTTAGTTTTTGAGA 59.848 38.462 0.00 0.00 0.00 3.27
1573 2215 2.027100 AGTTTTTGAGACCGGGAGATCC 60.027 50.000 6.32 0.00 0.00 3.36
1591 2241 7.168905 GGAGATCCCCATTATTTGTAGTAAGG 58.831 42.308 0.00 0.00 0.00 2.69
1592 2242 7.017254 GGAGATCCCCATTATTTGTAGTAAGGA 59.983 40.741 0.00 0.00 0.00 3.36
1594 2244 7.572861 AGATCCCCATTATTTGTAGTAAGGAGT 59.427 37.037 0.00 0.00 0.00 3.85
1595 2245 8.808240 ATCCCCATTATTTGTAGTAAGGAGTA 57.192 34.615 0.00 0.00 0.00 2.59
1597 2247 7.847848 TCCCCATTATTTGTAGTAAGGAGTAGT 59.152 37.037 0.00 0.00 0.00 2.73
1598 2248 9.151177 CCCCATTATTTGTAGTAAGGAGTAGTA 57.849 37.037 0.00 0.00 0.00 1.82
1599 2249 9.978044 CCCATTATTTGTAGTAAGGAGTAGTAC 57.022 37.037 0.00 0.00 38.60 2.73
1600 2250 9.674824 CCATTATTTGTAGTAAGGAGTAGTACG 57.325 37.037 0.00 0.00 40.30 3.67
1607 2257 1.666054 AAGGAGTAGTACGAGGCGAG 58.334 55.000 0.00 0.00 0.00 5.03
1608 2258 0.829333 AGGAGTAGTACGAGGCGAGA 59.171 55.000 0.00 0.00 0.00 4.04
1609 2259 1.202557 AGGAGTAGTACGAGGCGAGAG 60.203 57.143 0.00 0.00 0.00 3.20
1707 2374 4.202274 TGTTGTGTCGACCTCCTTGATTTA 60.202 41.667 14.12 0.00 0.00 1.40
1747 2421 2.037901 GTCAGAGATCCATGAGCTCCA 58.962 52.381 12.15 0.00 44.98 3.86
1780 2454 3.531073 GCGTTTGGGCCAATGAAAT 57.469 47.368 21.65 0.00 0.00 2.17
1813 2500 8.244802 AGTACTACTACATCACTTGCTAAACTG 58.755 37.037 0.00 0.00 0.00 3.16
1821 2508 1.873591 ACTTGCTAAACTGAACTGCCG 59.126 47.619 0.00 0.00 0.00 5.69
1849 2536 2.285602 CCGAAATCAAATGGACGTAGCG 60.286 50.000 0.00 0.00 0.00 4.26
1858 2545 2.680312 TGGACGTAGCGAGTAGTAGT 57.320 50.000 0.00 0.00 0.00 2.73
1859 2546 3.801114 TGGACGTAGCGAGTAGTAGTA 57.199 47.619 0.00 0.00 0.00 1.82
1860 2547 3.711086 TGGACGTAGCGAGTAGTAGTAG 58.289 50.000 0.00 0.00 0.00 2.57
1861 2548 3.131223 TGGACGTAGCGAGTAGTAGTAGT 59.869 47.826 0.00 0.00 0.00 2.73
1862 2549 4.338400 TGGACGTAGCGAGTAGTAGTAGTA 59.662 45.833 0.00 0.00 0.00 1.82
1863 2550 4.915085 GGACGTAGCGAGTAGTAGTAGTAG 59.085 50.000 0.00 0.00 0.00 2.57
1868 2555 6.577055 CGTAGCGAGTAGTAGTAGTAGTACAG 59.423 46.154 20.04 15.20 37.48 2.74
1941 2630 4.428209 CTGTAGTACAAGTCAGATGGCAG 58.572 47.826 4.21 0.00 0.00 4.85
1976 2698 2.698855 AATGCAAGATGGCGAGTACT 57.301 45.000 0.00 0.00 36.28 2.73
2001 2723 1.498865 GGTGACCGCACTGACAGTTG 61.499 60.000 5.04 1.30 44.52 3.16
2002 2724 0.529773 GTGACCGCACTGACAGTTGA 60.530 55.000 5.04 0.00 41.84 3.18
2005 2727 0.810031 ACCGCACTGACAGTTGACAC 60.810 55.000 5.04 0.00 0.00 3.67
2007 2729 0.809636 CGCACTGACAGTTGACACCA 60.810 55.000 5.04 0.00 0.00 4.17
2008 2730 1.597742 GCACTGACAGTTGACACCAT 58.402 50.000 5.04 0.00 0.00 3.55
2009 2731 1.949525 GCACTGACAGTTGACACCATT 59.050 47.619 5.04 0.00 0.00 3.16
2010 2732 2.358898 GCACTGACAGTTGACACCATTT 59.641 45.455 5.04 0.00 0.00 2.32
2051 2773 5.707066 ATTCCCAGATCCTATATGCTTCC 57.293 43.478 0.00 0.00 0.00 3.46
2057 2779 5.483231 CCAGATCCTATATGCTTCCTCTTCA 59.517 44.000 0.00 0.00 0.00 3.02
2060 2782 6.958778 AGATCCTATATGCTTCCTCTTCATCA 59.041 38.462 0.00 0.00 0.00 3.07
2063 2785 6.958778 TCCTATATGCTTCCTCTTCATCATCT 59.041 38.462 0.00 0.00 0.00 2.90
2064 2786 7.457218 TCCTATATGCTTCCTCTTCATCATCTT 59.543 37.037 0.00 0.00 0.00 2.40
2065 2787 8.102047 CCTATATGCTTCCTCTTCATCATCTTT 58.898 37.037 0.00 0.00 0.00 2.52
2066 2788 9.504708 CTATATGCTTCCTCTTCATCATCTTTT 57.495 33.333 0.00 0.00 0.00 2.27
2106 2828 1.798813 CGCCCGGAAGCATTTCATTTC 60.799 52.381 0.73 0.00 34.90 2.17
2120 2842 6.875195 GCATTTCATTTCCATGGAGAAGAAAA 59.125 34.615 28.73 19.57 33.53 2.29
2130 2852 8.208718 TCCATGGAGAAGAAAATGTTATTACG 57.791 34.615 11.44 0.00 0.00 3.18
2131 2853 7.282224 TCCATGGAGAAGAAAATGTTATTACGG 59.718 37.037 11.44 0.00 0.00 4.02
2132 2854 6.431198 TGGAGAAGAAAATGTTATTACGGC 57.569 37.500 0.00 0.00 0.00 5.68
2133 2855 5.064198 TGGAGAAGAAAATGTTATTACGGCG 59.936 40.000 4.80 4.80 0.00 6.46
2134 2856 5.479716 AGAAGAAAATGTTATTACGGCGG 57.520 39.130 13.24 0.00 0.00 6.13
2135 2857 4.334481 AGAAGAAAATGTTATTACGGCGGG 59.666 41.667 13.24 0.00 0.00 6.13
2136 2858 2.946990 AGAAAATGTTATTACGGCGGGG 59.053 45.455 13.24 0.00 0.00 5.73
2137 2859 2.713863 AAATGTTATTACGGCGGGGA 57.286 45.000 13.24 0.00 0.00 4.81
2138 2860 1.957668 AATGTTATTACGGCGGGGAC 58.042 50.000 13.24 3.00 0.00 4.46
2170 2892 6.625452 GTTTTACACGATCTACAATACGAGC 58.375 40.000 0.00 0.00 0.00 5.03
2171 2893 5.488645 TTACACGATCTACAATACGAGCA 57.511 39.130 0.00 0.00 0.00 4.26
2172 2894 4.365899 ACACGATCTACAATACGAGCAA 57.634 40.909 0.00 0.00 0.00 3.91
2173 2895 4.103357 ACACGATCTACAATACGAGCAAC 58.897 43.478 0.00 0.00 0.00 4.17
2175 2897 2.151360 CGATCTACAATACGAGCAACGC 59.849 50.000 0.00 0.00 46.94 4.84
2176 2898 2.640346 TCTACAATACGAGCAACGCA 57.360 45.000 0.00 0.00 46.94 5.24
2177 2899 2.949142 TCTACAATACGAGCAACGCAA 58.051 42.857 0.00 0.00 46.94 4.85
2178 2900 3.517602 TCTACAATACGAGCAACGCAAT 58.482 40.909 0.00 0.00 46.94 3.56
2179 2901 4.674475 TCTACAATACGAGCAACGCAATA 58.326 39.130 0.00 0.00 46.94 1.90
2180 2902 5.103687 TCTACAATACGAGCAACGCAATAA 58.896 37.500 0.00 0.00 46.94 1.40
2181 2903 4.258935 ACAATACGAGCAACGCAATAAG 57.741 40.909 0.00 0.00 46.94 1.73
2182 2904 3.930229 ACAATACGAGCAACGCAATAAGA 59.070 39.130 0.00 0.00 46.94 2.10
2183 2905 4.390603 ACAATACGAGCAACGCAATAAGAA 59.609 37.500 0.00 0.00 46.94 2.52
2184 2906 4.778842 ATACGAGCAACGCAATAAGAAG 57.221 40.909 0.00 0.00 46.94 2.85
2185 2907 1.128692 ACGAGCAACGCAATAAGAAGC 59.871 47.619 0.00 0.00 46.94 3.86
2186 2908 1.529826 CGAGCAACGCAATAAGAAGCC 60.530 52.381 0.00 0.00 34.51 4.35
2187 2909 1.468520 GAGCAACGCAATAAGAAGCCA 59.531 47.619 0.00 0.00 0.00 4.75
2188 2910 1.885887 AGCAACGCAATAAGAAGCCAA 59.114 42.857 0.00 0.00 0.00 4.52
2189 2911 2.095059 AGCAACGCAATAAGAAGCCAAG 60.095 45.455 0.00 0.00 0.00 3.61
2190 2912 2.095263 GCAACGCAATAAGAAGCCAAGA 60.095 45.455 0.00 0.00 0.00 3.02
2191 2913 3.492313 CAACGCAATAAGAAGCCAAGAC 58.508 45.455 0.00 0.00 0.00 3.01
2192 2914 2.778299 ACGCAATAAGAAGCCAAGACA 58.222 42.857 0.00 0.00 0.00 3.41
2193 2915 3.347216 ACGCAATAAGAAGCCAAGACAT 58.653 40.909 0.00 0.00 0.00 3.06
2194 2916 3.758554 ACGCAATAAGAAGCCAAGACATT 59.241 39.130 0.00 0.00 0.00 2.71
2195 2917 4.941263 ACGCAATAAGAAGCCAAGACATTA 59.059 37.500 0.00 0.00 0.00 1.90
2196 2918 5.163754 ACGCAATAAGAAGCCAAGACATTAC 60.164 40.000 0.00 0.00 0.00 1.89
2197 2919 5.163764 CGCAATAAGAAGCCAAGACATTACA 60.164 40.000 0.00 0.00 0.00 2.41
2198 2920 6.030228 GCAATAAGAAGCCAAGACATTACAC 58.970 40.000 0.00 0.00 0.00 2.90
2199 2921 6.349280 GCAATAAGAAGCCAAGACATTACACA 60.349 38.462 0.00 0.00 0.00 3.72
2200 2922 7.592938 CAATAAGAAGCCAAGACATTACACAA 58.407 34.615 0.00 0.00 0.00 3.33
2201 2923 7.759489 ATAAGAAGCCAAGACATTACACAAA 57.241 32.000 0.00 0.00 0.00 2.83
2202 2924 6.463995 AAGAAGCCAAGACATTACACAAAA 57.536 33.333 0.00 0.00 0.00 2.44
2203 2925 6.076981 AGAAGCCAAGACATTACACAAAAG 57.923 37.500 0.00 0.00 0.00 2.27
2204 2926 5.594317 AGAAGCCAAGACATTACACAAAAGT 59.406 36.000 0.00 0.00 0.00 2.66
2205 2927 5.186996 AGCCAAGACATTACACAAAAGTG 57.813 39.130 0.00 0.00 0.00 3.16
2206 2928 4.887071 AGCCAAGACATTACACAAAAGTGA 59.113 37.500 2.22 0.00 0.00 3.41
2207 2929 4.976116 GCCAAGACATTACACAAAAGTGAC 59.024 41.667 2.22 0.00 0.00 3.67
2208 2930 5.519722 CCAAGACATTACACAAAAGTGACC 58.480 41.667 2.22 0.00 0.00 4.02
2209 2931 5.204833 CAAGACATTACACAAAAGTGACCG 58.795 41.667 2.22 0.00 0.00 4.79
2210 2932 4.448210 AGACATTACACAAAAGTGACCGT 58.552 39.130 2.22 0.00 0.00 4.83
2211 2933 4.510340 AGACATTACACAAAAGTGACCGTC 59.490 41.667 2.22 0.00 0.00 4.79
2212 2934 3.562557 ACATTACACAAAAGTGACCGTCC 59.437 43.478 2.22 0.00 0.00 4.79
2213 2935 3.547054 TTACACAAAAGTGACCGTCCT 57.453 42.857 2.22 0.00 0.00 3.85
2214 2936 1.949465 ACACAAAAGTGACCGTCCTC 58.051 50.000 2.22 0.00 0.00 3.71
2215 2937 1.208535 ACACAAAAGTGACCGTCCTCA 59.791 47.619 2.22 0.00 0.00 3.86
2216 2938 1.597663 CACAAAAGTGACCGTCCTCAC 59.402 52.381 0.00 0.00 40.91 3.51
2219 2941 4.098847 AGTGACCGTCCTCACTCC 57.901 61.111 0.00 0.00 46.65 3.85
2220 2942 1.153061 AGTGACCGTCCTCACTCCA 59.847 57.895 0.00 0.00 46.65 3.86
2221 2943 1.179814 AGTGACCGTCCTCACTCCAC 61.180 60.000 0.00 0.00 46.65 4.02
2222 2944 1.152631 TGACCGTCCTCACTCCACA 60.153 57.895 0.00 0.00 0.00 4.17
2223 2945 1.179174 TGACCGTCCTCACTCCACAG 61.179 60.000 0.00 0.00 0.00 3.66
2224 2946 1.152525 ACCGTCCTCACTCCACAGT 60.153 57.895 0.00 0.00 0.00 3.55
2225 2947 1.179814 ACCGTCCTCACTCCACAGTC 61.180 60.000 0.00 0.00 0.00 3.51
2226 2948 1.587054 CGTCCTCACTCCACAGTCC 59.413 63.158 0.00 0.00 0.00 3.85
2227 2949 0.896019 CGTCCTCACTCCACAGTCCT 60.896 60.000 0.00 0.00 0.00 3.85
2228 2950 0.892063 GTCCTCACTCCACAGTCCTC 59.108 60.000 0.00 0.00 0.00 3.71
2229 2951 0.482887 TCCTCACTCCACAGTCCTCA 59.517 55.000 0.00 0.00 0.00 3.86
2230 2952 0.605589 CCTCACTCCACAGTCCTCAC 59.394 60.000 0.00 0.00 0.00 3.51
2231 2953 0.605589 CTCACTCCACAGTCCTCACC 59.394 60.000 0.00 0.00 0.00 4.02
2232 2954 0.105709 TCACTCCACAGTCCTCACCA 60.106 55.000 0.00 0.00 0.00 4.17
2233 2955 0.758734 CACTCCACAGTCCTCACCAA 59.241 55.000 0.00 0.00 0.00 3.67
2234 2956 0.759346 ACTCCACAGTCCTCACCAAC 59.241 55.000 0.00 0.00 0.00 3.77
2235 2957 0.035458 CTCCACAGTCCTCACCAACC 59.965 60.000 0.00 0.00 0.00 3.77
2236 2958 1.301716 CCACAGTCCTCACCAACCG 60.302 63.158 0.00 0.00 0.00 4.44
2237 2959 1.301716 CACAGTCCTCACCAACCGG 60.302 63.158 0.00 0.00 38.77 5.28
2238 2960 2.358737 CAGTCCTCACCAACCGGC 60.359 66.667 0.00 0.00 34.57 6.13
2239 2961 3.637273 AGTCCTCACCAACCGGCC 61.637 66.667 0.00 0.00 34.57 6.13
2240 2962 3.637273 GTCCTCACCAACCGGCCT 61.637 66.667 0.00 0.00 34.57 5.19
2241 2963 2.120940 TCCTCACCAACCGGCCTA 59.879 61.111 0.00 0.00 34.57 3.93
2242 2964 2.267961 CCTCACCAACCGGCCTAC 59.732 66.667 0.00 0.00 34.57 3.18
2243 2965 2.125673 CTCACCAACCGGCCTACG 60.126 66.667 0.00 0.00 43.80 3.51
2253 2975 4.424566 GGCCTACGACCGCAACGA 62.425 66.667 0.00 0.00 34.70 3.85
2254 2976 3.177249 GCCTACGACCGCAACGAC 61.177 66.667 0.00 0.00 34.70 4.34
2255 2977 2.256158 CCTACGACCGCAACGACA 59.744 61.111 0.00 0.00 34.70 4.35
2256 2978 1.153901 CCTACGACCGCAACGACAT 60.154 57.895 0.00 0.00 34.70 3.06
2257 2979 0.099259 CCTACGACCGCAACGACATA 59.901 55.000 0.00 0.00 34.70 2.29
2258 2980 1.467883 CCTACGACCGCAACGACATAA 60.468 52.381 0.00 0.00 34.70 1.90
2259 2981 2.252747 CTACGACCGCAACGACATAAA 58.747 47.619 0.00 0.00 34.70 1.40
2260 2982 0.785979 ACGACCGCAACGACATAAAC 59.214 50.000 0.00 0.00 34.70 2.01
2261 2983 1.065358 CGACCGCAACGACATAAACT 58.935 50.000 0.00 0.00 0.00 2.66
2262 2984 1.058695 CGACCGCAACGACATAAACTC 59.941 52.381 0.00 0.00 0.00 3.01
2263 2985 1.058695 GACCGCAACGACATAAACTCG 59.941 52.381 0.00 0.00 37.17 4.18
2264 2986 0.247145 CCGCAACGACATAAACTCGC 60.247 55.000 0.00 0.00 34.34 5.03
2265 2987 0.247145 CGCAACGACATAAACTCGCC 60.247 55.000 0.00 0.00 34.34 5.54
2266 2988 1.076332 GCAACGACATAAACTCGCCT 58.924 50.000 0.00 0.00 34.34 5.52
2267 2989 1.463444 GCAACGACATAAACTCGCCTT 59.537 47.619 0.00 0.00 34.34 4.35
2268 2990 2.724839 GCAACGACATAAACTCGCCTTG 60.725 50.000 0.00 0.00 34.34 3.61
2269 2991 1.076332 ACGACATAAACTCGCCTTGC 58.924 50.000 0.00 0.00 34.34 4.01
2270 2992 0.373716 CGACATAAACTCGCCTTGCC 59.626 55.000 0.00 0.00 0.00 4.52
2271 2993 0.733150 GACATAAACTCGCCTTGCCC 59.267 55.000 0.00 0.00 0.00 5.36
2272 2994 0.037590 ACATAAACTCGCCTTGCCCA 59.962 50.000 0.00 0.00 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.124736 CCATCCCGCGTTCCACAT 60.125 61.111 4.92 0.00 0.00 3.21
34 35 1.262640 ACGTCCGGGCTTTACTCCAT 61.263 55.000 3.66 0.00 0.00 3.41
97 98 1.729470 CGGAGGAGAGTCCATCGGTG 61.729 65.000 0.00 0.00 39.61 4.94
108 109 4.116585 AGAGGCGAGCGGAGGAGA 62.117 66.667 0.00 0.00 0.00 3.71
131 133 3.117701 TCCAAAAATGGAGTGTCACTGGA 60.118 43.478 11.04 6.23 33.38 3.86
134 136 5.846203 CATTTCCAAAAATGGAGTGTCACT 58.154 37.500 4.81 4.81 45.30 3.41
155 157 2.034879 CGAACTCGGGTTGCAGCAT 61.035 57.895 4.77 0.00 35.58 3.79
449 1049 5.921004 TGATGCAAATTGTAAAAGTTGGC 57.079 34.783 7.86 1.58 0.00 4.52
561 1161 2.580783 ACTACCCCTGTGCCATAAACAT 59.419 45.455 0.00 0.00 0.00 2.71
572 1172 3.434309 TCGCTAAAAGTACTACCCCTGT 58.566 45.455 0.00 0.00 0.00 4.00
576 1176 3.950395 TCTCCTCGCTAAAAGTACTACCC 59.050 47.826 0.00 0.00 0.00 3.69
577 1177 4.497842 GCTCTCCTCGCTAAAAGTACTACC 60.498 50.000 0.00 0.00 0.00 3.18
578 1178 4.600032 GCTCTCCTCGCTAAAAGTACTAC 58.400 47.826 0.00 0.00 0.00 2.73
579 1179 3.311871 CGCTCTCCTCGCTAAAAGTACTA 59.688 47.826 0.00 0.00 0.00 1.82
580 1180 2.097791 CGCTCTCCTCGCTAAAAGTACT 59.902 50.000 0.00 0.00 0.00 2.73
581 1181 2.159407 ACGCTCTCCTCGCTAAAAGTAC 60.159 50.000 0.00 0.00 0.00 2.73
582 1182 2.089980 ACGCTCTCCTCGCTAAAAGTA 58.910 47.619 0.00 0.00 0.00 2.24
583 1183 0.889306 ACGCTCTCCTCGCTAAAAGT 59.111 50.000 0.00 0.00 0.00 2.66
584 1184 1.135373 TCACGCTCTCCTCGCTAAAAG 60.135 52.381 0.00 0.00 0.00 2.27
585 1185 0.885879 TCACGCTCTCCTCGCTAAAA 59.114 50.000 0.00 0.00 0.00 1.52
586 1186 0.170561 GTCACGCTCTCCTCGCTAAA 59.829 55.000 0.00 0.00 0.00 1.85
587 1187 1.801332 GTCACGCTCTCCTCGCTAA 59.199 57.895 0.00 0.00 0.00 3.09
588 1188 2.461945 CGTCACGCTCTCCTCGCTA 61.462 63.158 0.00 0.00 0.00 4.26
589 1189 3.805307 CGTCACGCTCTCCTCGCT 61.805 66.667 0.00 0.00 0.00 4.93
590 1190 4.104417 ACGTCACGCTCTCCTCGC 62.104 66.667 0.00 0.00 0.00 5.03
591 1191 2.202362 CACGTCACGCTCTCCTCG 60.202 66.667 0.00 0.00 0.00 4.63
592 1192 2.179517 CCACGTCACGCTCTCCTC 59.820 66.667 0.00 0.00 0.00 3.71
593 1193 4.057428 GCCACGTCACGCTCTCCT 62.057 66.667 0.00 0.00 0.00 3.69
594 1194 2.600122 CTAGCCACGTCACGCTCTCC 62.600 65.000 0.00 0.00 36.53 3.71
595 1195 1.226435 CTAGCCACGTCACGCTCTC 60.226 63.158 0.00 0.00 36.53 3.20
596 1196 2.701780 CCTAGCCACGTCACGCTCT 61.702 63.158 0.00 0.00 36.53 4.09
597 1197 2.202623 CCTAGCCACGTCACGCTC 60.203 66.667 0.00 0.00 36.53 5.03
598 1198 3.760035 CCCTAGCCACGTCACGCT 61.760 66.667 0.00 6.55 39.17 5.07
599 1199 3.701604 CTCCCTAGCCACGTCACGC 62.702 68.421 0.00 0.00 0.00 5.34
600 1200 2.490217 CTCCCTAGCCACGTCACG 59.510 66.667 0.00 0.00 0.00 4.35
601 1201 1.681327 TCCTCCCTAGCCACGTCAC 60.681 63.158 0.00 0.00 0.00 3.67
602 1202 1.681327 GTCCTCCCTAGCCACGTCA 60.681 63.158 0.00 0.00 0.00 4.35
603 1203 2.772691 CGTCCTCCCTAGCCACGTC 61.773 68.421 0.00 0.00 0.00 4.34
604 1204 2.754658 CGTCCTCCCTAGCCACGT 60.755 66.667 0.00 0.00 0.00 4.49
605 1205 3.528370 CCGTCCTCCCTAGCCACG 61.528 72.222 0.00 0.00 0.00 4.94
606 1206 2.363925 ACCGTCCTCCCTAGCCAC 60.364 66.667 0.00 0.00 0.00 5.01
607 1207 2.363795 CACCGTCCTCCCTAGCCA 60.364 66.667 0.00 0.00 0.00 4.75
608 1208 1.049289 ATTCACCGTCCTCCCTAGCC 61.049 60.000 0.00 0.00 0.00 3.93
609 1209 0.389757 GATTCACCGTCCTCCCTAGC 59.610 60.000 0.00 0.00 0.00 3.42
610 1210 1.041437 GGATTCACCGTCCTCCCTAG 58.959 60.000 0.00 0.00 32.85 3.02
611 1211 3.218974 GGATTCACCGTCCTCCCTA 57.781 57.895 0.00 0.00 32.85 3.53
612 1212 4.051932 GGATTCACCGTCCTCCCT 57.948 61.111 0.00 0.00 32.85 4.20
630 1230 1.357334 CTCTAAGACTCGCGGAGGC 59.643 63.158 6.13 4.57 38.12 4.70
631 1231 1.098712 AGCTCTAAGACTCGCGGAGG 61.099 60.000 6.13 0.00 33.35 4.30
632 1232 1.584175 TAGCTCTAAGACTCGCGGAG 58.416 55.000 6.13 3.86 35.52 4.63
633 1233 1.669779 GTTAGCTCTAAGACTCGCGGA 59.330 52.381 6.13 0.00 0.00 5.54
634 1234 1.400846 TGTTAGCTCTAAGACTCGCGG 59.599 52.381 6.13 0.00 0.00 6.46
635 1235 2.710760 CTGTTAGCTCTAAGACTCGCG 58.289 52.381 0.00 0.00 0.00 5.87
636 1236 2.456010 GCTGTTAGCTCTAAGACTCGC 58.544 52.381 0.00 0.00 38.45 5.03
637 1237 2.223618 GGGCTGTTAGCTCTAAGACTCG 60.224 54.545 0.00 0.00 39.07 4.18
638 1238 2.101750 GGGGCTGTTAGCTCTAAGACTC 59.898 54.545 0.20 0.00 42.67 3.36
639 1239 2.112190 GGGGCTGTTAGCTCTAAGACT 58.888 52.381 0.20 0.00 42.67 3.24
640 1240 1.139256 GGGGGCTGTTAGCTCTAAGAC 59.861 57.143 0.20 0.00 42.67 3.01
641 1241 1.497161 GGGGGCTGTTAGCTCTAAGA 58.503 55.000 0.20 0.00 42.67 2.10
642 1242 0.105039 CGGGGGCTGTTAGCTCTAAG 59.895 60.000 0.20 0.00 42.67 2.18
643 1243 1.335132 CCGGGGGCTGTTAGCTCTAA 61.335 60.000 0.00 0.00 42.67 2.10
644 1244 1.760875 CCGGGGGCTGTTAGCTCTA 60.761 63.158 0.00 0.00 42.67 2.43
645 1245 3.083997 CCGGGGGCTGTTAGCTCT 61.084 66.667 0.00 0.00 42.67 4.09
646 1246 2.479820 AAACCGGGGGCTGTTAGCTC 62.480 60.000 6.32 0.00 42.23 4.09
647 1247 2.535331 AAACCGGGGGCTGTTAGCT 61.535 57.895 6.32 0.00 41.99 3.32
648 1248 2.035155 AAACCGGGGGCTGTTAGC 59.965 61.111 6.32 0.00 41.46 3.09
649 1249 0.958876 GTCAAACCGGGGGCTGTTAG 60.959 60.000 6.32 0.00 0.00 2.34
650 1250 1.073548 GTCAAACCGGGGGCTGTTA 59.926 57.895 6.32 0.00 0.00 2.41
651 1251 2.203437 GTCAAACCGGGGGCTGTT 60.203 61.111 6.32 0.00 0.00 3.16
652 1252 3.491598 CTGTCAAACCGGGGGCTGT 62.492 63.158 6.32 0.00 0.00 4.40
653 1253 2.672996 CTGTCAAACCGGGGGCTG 60.673 66.667 6.32 0.00 0.00 4.85
654 1254 1.789576 ATTCTGTCAAACCGGGGGCT 61.790 55.000 6.32 0.00 0.00 5.19
655 1255 1.304134 ATTCTGTCAAACCGGGGGC 60.304 57.895 6.32 0.00 0.00 5.80
656 1256 0.037590 TCATTCTGTCAAACCGGGGG 59.962 55.000 6.32 0.00 0.00 5.40
657 1257 1.904287 TTCATTCTGTCAAACCGGGG 58.096 50.000 6.32 0.00 0.00 5.73
658 1258 3.081061 TGATTCATTCTGTCAAACCGGG 58.919 45.455 6.32 0.00 0.00 5.73
659 1259 3.426695 GCTGATTCATTCTGTCAAACCGG 60.427 47.826 0.00 0.00 0.00 5.28
660 1260 3.438087 AGCTGATTCATTCTGTCAAACCG 59.562 43.478 0.00 0.00 0.00 4.44
661 1261 4.142513 GGAGCTGATTCATTCTGTCAAACC 60.143 45.833 0.00 0.00 0.00 3.27
662 1262 4.456911 TGGAGCTGATTCATTCTGTCAAAC 59.543 41.667 0.00 0.00 0.00 2.93
663 1263 4.654915 TGGAGCTGATTCATTCTGTCAAA 58.345 39.130 0.00 0.00 0.00 2.69
664 1264 4.259356 CTGGAGCTGATTCATTCTGTCAA 58.741 43.478 0.00 0.00 0.00 3.18
665 1265 3.870274 CTGGAGCTGATTCATTCTGTCA 58.130 45.455 0.00 0.00 0.00 3.58
666 1266 2.613133 GCTGGAGCTGATTCATTCTGTC 59.387 50.000 0.00 0.00 38.21 3.51
667 1267 2.641305 GCTGGAGCTGATTCATTCTGT 58.359 47.619 0.00 0.00 38.21 3.41
668 1268 1.948145 GGCTGGAGCTGATTCATTCTG 59.052 52.381 0.00 0.00 41.70 3.02
669 1269 1.562942 TGGCTGGAGCTGATTCATTCT 59.437 47.619 0.00 0.00 41.70 2.40
670 1270 1.674962 GTGGCTGGAGCTGATTCATTC 59.325 52.381 0.00 0.00 41.70 2.67
671 1271 1.284198 AGTGGCTGGAGCTGATTCATT 59.716 47.619 0.00 0.00 41.70 2.57
672 1272 0.917533 AGTGGCTGGAGCTGATTCAT 59.082 50.000 0.00 0.00 41.70 2.57
673 1273 1.571955 TAGTGGCTGGAGCTGATTCA 58.428 50.000 0.00 0.00 41.70 2.57
674 1274 2.698855 TTAGTGGCTGGAGCTGATTC 57.301 50.000 0.00 0.00 41.70 2.52
675 1275 2.776536 AGATTAGTGGCTGGAGCTGATT 59.223 45.455 0.00 0.00 41.70 2.57
676 1276 2.406559 AGATTAGTGGCTGGAGCTGAT 58.593 47.619 0.00 0.00 41.70 2.90
677 1277 1.871418 AGATTAGTGGCTGGAGCTGA 58.129 50.000 0.00 0.00 41.70 4.26
678 1278 2.544694 CGTAGATTAGTGGCTGGAGCTG 60.545 54.545 0.00 0.00 41.70 4.24
679 1279 1.683917 CGTAGATTAGTGGCTGGAGCT 59.316 52.381 0.00 0.00 41.70 4.09
680 1280 1.409427 ACGTAGATTAGTGGCTGGAGC 59.591 52.381 0.00 0.00 41.14 4.70
681 1281 3.802948 AACGTAGATTAGTGGCTGGAG 57.197 47.619 0.00 0.00 0.00 3.86
682 1282 3.259876 ACAAACGTAGATTAGTGGCTGGA 59.740 43.478 0.00 0.00 0.00 3.86
683 1283 3.596214 ACAAACGTAGATTAGTGGCTGG 58.404 45.455 0.00 0.00 0.00 4.85
684 1284 4.242475 TGACAAACGTAGATTAGTGGCTG 58.758 43.478 0.00 0.00 0.00 4.85
685 1285 4.530710 TGACAAACGTAGATTAGTGGCT 57.469 40.909 0.00 0.00 0.00 4.75
686 1286 4.689345 AGTTGACAAACGTAGATTAGTGGC 59.311 41.667 0.00 0.00 41.45 5.01
687 1287 6.780706 AAGTTGACAAACGTAGATTAGTGG 57.219 37.500 0.00 0.00 41.45 4.00
688 1288 8.073355 AGAAAGTTGACAAACGTAGATTAGTG 57.927 34.615 0.00 0.00 41.45 2.74
689 1289 8.548721 CAAGAAAGTTGACAAACGTAGATTAGT 58.451 33.333 0.00 0.00 41.45 2.24
690 1290 8.548721 ACAAGAAAGTTGACAAACGTAGATTAG 58.451 33.333 0.00 0.00 41.45 1.73
691 1291 8.428186 ACAAGAAAGTTGACAAACGTAGATTA 57.572 30.769 0.00 0.00 41.45 1.75
692 1292 7.316544 ACAAGAAAGTTGACAAACGTAGATT 57.683 32.000 0.00 0.00 41.45 2.40
693 1293 6.920569 ACAAGAAAGTTGACAAACGTAGAT 57.079 33.333 0.00 0.00 41.45 1.98
694 1294 6.256321 GGTACAAGAAAGTTGACAAACGTAGA 59.744 38.462 0.00 0.00 41.45 2.59
695 1295 6.036300 TGGTACAAGAAAGTTGACAAACGTAG 59.964 38.462 0.00 0.00 36.97 3.51
696 1296 5.873712 TGGTACAAGAAAGTTGACAAACGTA 59.126 36.000 0.00 0.00 36.97 3.57
697 1297 4.696402 TGGTACAAGAAAGTTGACAAACGT 59.304 37.500 0.00 0.00 36.97 3.99
698 1298 5.224562 TGGTACAAGAAAGTTGACAAACG 57.775 39.130 0.00 0.00 36.97 3.60
732 1332 3.487879 CGTGGCGGTACAAGAAAGTTTTT 60.488 43.478 0.00 0.00 0.00 1.94
733 1333 2.032426 CGTGGCGGTACAAGAAAGTTTT 59.968 45.455 0.00 0.00 0.00 2.43
734 1334 1.600485 CGTGGCGGTACAAGAAAGTTT 59.400 47.619 0.00 0.00 0.00 2.66
901 1505 0.320247 CTGCTCAAGTGGCTCGTCTT 60.320 55.000 0.00 0.00 0.00 3.01
935 1542 2.092699 TCTCTCGATCTCTCCTTCTGCA 60.093 50.000 0.00 0.00 0.00 4.41
950 1557 4.035017 GCTTTCTTTCTCTCGATCTCTCG 58.965 47.826 0.00 0.00 46.41 4.04
951 1558 4.992688 TGCTTTCTTTCTCTCGATCTCTC 58.007 43.478 0.00 0.00 0.00 3.20
952 1559 5.398603 TTGCTTTCTTTCTCTCGATCTCT 57.601 39.130 0.00 0.00 0.00 3.10
953 1560 5.051774 CGATTGCTTTCTTTCTCTCGATCTC 60.052 44.000 0.00 0.00 0.00 2.75
954 1561 4.803088 CGATTGCTTTCTTTCTCTCGATCT 59.197 41.667 0.00 0.00 0.00 2.75
955 1562 4.800993 TCGATTGCTTTCTTTCTCTCGATC 59.199 41.667 0.00 0.00 0.00 3.69
956 1563 4.748892 TCGATTGCTTTCTTTCTCTCGAT 58.251 39.130 0.00 0.00 0.00 3.59
957 1564 4.169508 CTCGATTGCTTTCTTTCTCTCGA 58.830 43.478 0.00 0.00 33.42 4.04
958 1565 3.305629 CCTCGATTGCTTTCTTTCTCTCG 59.694 47.826 0.00 0.00 0.00 4.04
1205 1818 4.697756 CCTCCGCGGACAAAGGCA 62.698 66.667 27.28 0.01 33.16 4.75
1236 1849 4.250305 ACGAGGTGGTGCGCCTTT 62.250 61.111 18.96 2.40 45.19 3.11
1294 1907 2.202797 CTCATGTGCCGACGGAGG 60.203 66.667 20.50 0.00 0.00 4.30
1299 1912 2.400962 TGCATGCTCATGTGCCGAC 61.401 57.895 20.33 6.66 40.56 4.79
1315 1928 2.223433 GGCATTCATCAGCTACTTGTGC 60.223 50.000 0.00 0.00 0.00 4.57
1318 1931 3.064958 CACAGGCATTCATCAGCTACTTG 59.935 47.826 0.00 0.00 0.00 3.16
1341 1954 1.271934 TGGCGAAACAATCACCATTGG 59.728 47.619 0.00 0.00 43.47 3.16
1374 2015 2.500369 CGCTGCACACAATGACGC 60.500 61.111 0.00 0.00 0.00 5.19
1421 2062 2.736682 GCGTTGATGAACCGTCCGG 61.737 63.158 3.76 3.76 42.03 5.14
1422 2063 1.736645 AGCGTTGATGAACCGTCCG 60.737 57.895 0.00 0.00 0.00 4.79
1554 2196 2.781681 GGATCTCCCGGTCTCAAAAA 57.218 50.000 0.00 0.00 0.00 1.94
1573 2215 9.978044 GTACTACTCCTTACTACAAATAATGGG 57.022 37.037 0.00 0.00 0.00 4.00
1577 2219 9.113838 CCTCGTACTACTCCTTACTACAAATAA 57.886 37.037 0.00 0.00 0.00 1.40
1579 2221 6.039159 GCCTCGTACTACTCCTTACTACAAAT 59.961 42.308 0.00 0.00 0.00 2.32
1589 2239 0.829333 TCTCGCCTCGTACTACTCCT 59.171 55.000 0.00 0.00 0.00 3.69
1590 2240 1.219646 CTCTCGCCTCGTACTACTCC 58.780 60.000 0.00 0.00 0.00 3.85
1591 2241 0.582960 GCTCTCGCCTCGTACTACTC 59.417 60.000 0.00 0.00 0.00 2.59
1592 2242 2.692817 GCTCTCGCCTCGTACTACT 58.307 57.895 0.00 0.00 0.00 2.57
1627 2277 1.375523 GTTCCCCACGGCAGTACAG 60.376 63.158 0.00 0.00 0.00 2.74
1636 2286 2.358737 GCTGGTCAGTTCCCCACG 60.359 66.667 0.00 0.00 0.00 4.94
1641 2291 0.307760 CAACAACGCTGGTCAGTTCC 59.692 55.000 0.00 0.00 0.00 3.62
1707 2374 4.346127 TGACCGATTTGAGATCCAGATGAT 59.654 41.667 0.00 0.00 36.01 2.45
1771 2445 6.173339 AGTAGTACTGTCACCATTTCATTGG 58.827 40.000 5.39 0.00 42.82 3.16
1772 2446 7.817478 TGTAGTAGTACTGTCACCATTTCATTG 59.183 37.037 13.29 0.00 0.00 2.82
1773 2447 7.903145 TGTAGTAGTACTGTCACCATTTCATT 58.097 34.615 13.29 0.00 0.00 2.57
1774 2448 7.476540 TGTAGTAGTACTGTCACCATTTCAT 57.523 36.000 13.29 0.00 0.00 2.57
1775 2449 6.904463 TGTAGTAGTACTGTCACCATTTCA 57.096 37.500 13.29 0.00 0.00 2.69
1776 2450 7.488471 GTGATGTAGTAGTACTGTCACCATTTC 59.512 40.741 22.76 12.92 38.36 2.17
1777 2451 7.178628 AGTGATGTAGTAGTACTGTCACCATTT 59.821 37.037 26.10 15.11 41.47 2.32
1778 2452 6.663953 AGTGATGTAGTAGTACTGTCACCATT 59.336 38.462 26.10 13.56 41.47 3.16
1779 2453 6.188407 AGTGATGTAGTAGTACTGTCACCAT 58.812 40.000 26.10 15.47 41.47 3.55
1780 2454 5.567430 AGTGATGTAGTAGTACTGTCACCA 58.433 41.667 26.10 15.75 41.47 4.17
1794 2470 6.619446 GCAGTTCAGTTTAGCAAGTGATGTAG 60.619 42.308 0.00 0.00 41.20 2.74
1821 2508 4.269363 CGTCCATTTGATTTCGGTACTACC 59.731 45.833 0.00 0.00 34.05 3.18
1859 2546 9.311916 CAATTCGTACTACTACTCTGTACTACT 57.688 37.037 0.00 0.00 35.67 2.57
1860 2547 9.092876 ACAATTCGTACTACTACTCTGTACTAC 57.907 37.037 0.00 0.00 35.67 2.73
1862 2549 9.092876 GTACAATTCGTACTACTACTCTGTACT 57.907 37.037 9.55 0.00 46.01 2.73
1883 2570 9.151471 GATTTCAGTTCATTAGCAGTAGTACAA 57.849 33.333 2.52 0.00 0.00 2.41
2001 2723 1.686052 TGCAAGTTCCCAAATGGTGTC 59.314 47.619 0.00 0.00 34.77 3.67
2002 2724 1.688197 CTGCAAGTTCCCAAATGGTGT 59.312 47.619 0.00 0.00 34.77 4.16
2005 2727 1.341080 ACCTGCAAGTTCCCAAATGG 58.659 50.000 0.00 0.00 0.00 3.16
2007 2729 7.364673 GGAATAATAACCTGCAAGTTCCCAAAT 60.365 37.037 3.41 0.00 0.00 2.32
2008 2730 6.071051 GGAATAATAACCTGCAAGTTCCCAAA 60.071 38.462 3.41 0.00 0.00 3.28
2009 2731 5.420739 GGAATAATAACCTGCAAGTTCCCAA 59.579 40.000 3.41 0.00 0.00 4.12
2010 2732 4.953579 GGAATAATAACCTGCAAGTTCCCA 59.046 41.667 3.41 0.00 0.00 4.37
2051 2773 5.333513 GCTCAAGCAAAAGATGATGAAGAG 58.666 41.667 0.00 0.00 41.59 2.85
2106 2828 7.417612 CCGTAATAACATTTTCTTCTCCATGG 58.582 38.462 4.97 4.97 0.00 3.66
2120 2842 0.249573 CGTCCCCGCCGTAATAACAT 60.250 55.000 0.00 0.00 0.00 2.71
2146 2868 6.252015 TGCTCGTATTGTAGATCGTGTAAAAC 59.748 38.462 0.00 0.00 0.00 2.43
2147 2869 6.324042 TGCTCGTATTGTAGATCGTGTAAAA 58.676 36.000 0.00 0.00 0.00 1.52
2148 2870 5.882553 TGCTCGTATTGTAGATCGTGTAAA 58.117 37.500 0.00 0.00 0.00 2.01
2149 2871 5.488645 TGCTCGTATTGTAGATCGTGTAA 57.511 39.130 0.00 0.00 0.00 2.41
2150 2872 5.268544 GTTGCTCGTATTGTAGATCGTGTA 58.731 41.667 0.00 0.00 0.00 2.90
2151 2873 4.103357 GTTGCTCGTATTGTAGATCGTGT 58.897 43.478 0.00 0.00 0.00 4.49
2152 2874 3.177838 CGTTGCTCGTATTGTAGATCGTG 59.822 47.826 0.00 0.00 34.52 4.35
2153 2875 3.360533 CGTTGCTCGTATTGTAGATCGT 58.639 45.455 0.00 0.00 34.52 3.73
2154 2876 2.151360 GCGTTGCTCGTATTGTAGATCG 59.849 50.000 4.16 0.00 42.13 3.69
2155 2877 3.113322 TGCGTTGCTCGTATTGTAGATC 58.887 45.455 4.16 0.00 42.13 2.75
2156 2878 3.159353 TGCGTTGCTCGTATTGTAGAT 57.841 42.857 4.16 0.00 42.13 1.98
2157 2879 2.640346 TGCGTTGCTCGTATTGTAGA 57.360 45.000 4.16 0.00 42.13 2.59
2158 2880 3.925688 ATTGCGTTGCTCGTATTGTAG 57.074 42.857 4.16 0.00 42.13 2.74
2159 2881 5.103687 TCTTATTGCGTTGCTCGTATTGTA 58.896 37.500 4.16 0.00 42.13 2.41
2160 2882 3.930229 TCTTATTGCGTTGCTCGTATTGT 59.070 39.130 4.16 0.00 42.13 2.71
2161 2883 4.514545 TCTTATTGCGTTGCTCGTATTG 57.485 40.909 4.16 0.00 42.13 1.90
2162 2884 4.494199 GCTTCTTATTGCGTTGCTCGTATT 60.494 41.667 4.16 0.00 42.13 1.89
2163 2885 3.001330 GCTTCTTATTGCGTTGCTCGTAT 59.999 43.478 4.16 1.97 42.13 3.06
2164 2886 2.347452 GCTTCTTATTGCGTTGCTCGTA 59.653 45.455 4.16 0.00 42.13 3.43
2165 2887 1.128692 GCTTCTTATTGCGTTGCTCGT 59.871 47.619 4.16 0.00 42.13 4.18
2166 2888 1.529826 GGCTTCTTATTGCGTTGCTCG 60.530 52.381 0.00 0.00 43.12 5.03
2167 2889 1.468520 TGGCTTCTTATTGCGTTGCTC 59.531 47.619 0.00 0.00 0.00 4.26
2168 2890 1.533625 TGGCTTCTTATTGCGTTGCT 58.466 45.000 0.00 0.00 0.00 3.91
2169 2891 2.095263 TCTTGGCTTCTTATTGCGTTGC 60.095 45.455 0.00 0.00 0.00 4.17
2170 2892 3.058293 TGTCTTGGCTTCTTATTGCGTTG 60.058 43.478 0.00 0.00 0.00 4.10
2171 2893 3.146066 TGTCTTGGCTTCTTATTGCGTT 58.854 40.909 0.00 0.00 0.00 4.84
2172 2894 2.778299 TGTCTTGGCTTCTTATTGCGT 58.222 42.857 0.00 0.00 0.00 5.24
2173 2895 4.361451 AATGTCTTGGCTTCTTATTGCG 57.639 40.909 0.00 0.00 0.00 4.85
2174 2896 6.030228 GTGTAATGTCTTGGCTTCTTATTGC 58.970 40.000 0.00 0.00 0.00 3.56
2175 2897 7.144722 TGTGTAATGTCTTGGCTTCTTATTG 57.855 36.000 0.00 0.00 0.00 1.90
2176 2898 7.759489 TTGTGTAATGTCTTGGCTTCTTATT 57.241 32.000 0.00 0.00 0.00 1.40
2177 2899 7.759489 TTTGTGTAATGTCTTGGCTTCTTAT 57.241 32.000 0.00 0.00 0.00 1.73
2178 2900 7.284489 ACTTTTGTGTAATGTCTTGGCTTCTTA 59.716 33.333 0.00 0.00 0.00 2.10
2179 2901 6.096846 ACTTTTGTGTAATGTCTTGGCTTCTT 59.903 34.615 0.00 0.00 0.00 2.52
2180 2902 5.594317 ACTTTTGTGTAATGTCTTGGCTTCT 59.406 36.000 0.00 0.00 0.00 2.85
2181 2903 5.687285 CACTTTTGTGTAATGTCTTGGCTTC 59.313 40.000 0.00 0.00 44.94 3.86
2182 2904 5.591099 CACTTTTGTGTAATGTCTTGGCTT 58.409 37.500 0.00 0.00 44.94 4.35
2183 2905 5.186996 CACTTTTGTGTAATGTCTTGGCT 57.813 39.130 0.00 0.00 44.94 4.75
2197 2919 1.949465 GTGAGGACGGTCACTTTTGT 58.051 50.000 10.76 0.00 43.10 2.83
2203 2925 1.289380 GTGGAGTGAGGACGGTCAC 59.711 63.158 10.76 6.70 46.22 3.67
2204 2926 1.152631 TGTGGAGTGAGGACGGTCA 60.153 57.895 10.76 0.00 0.00 4.02
2205 2927 1.179814 ACTGTGGAGTGAGGACGGTC 61.180 60.000 0.00 0.00 0.00 4.79
2206 2928 1.152525 ACTGTGGAGTGAGGACGGT 60.153 57.895 0.00 0.00 0.00 4.83
2207 2929 1.587054 GACTGTGGAGTGAGGACGG 59.413 63.158 0.00 0.00 30.16 4.79
2208 2930 0.896019 AGGACTGTGGAGTGAGGACG 60.896 60.000 0.00 0.00 30.16 4.79
2209 2931 0.892063 GAGGACTGTGGAGTGAGGAC 59.108 60.000 0.00 0.00 30.16 3.85
2210 2932 0.482887 TGAGGACTGTGGAGTGAGGA 59.517 55.000 0.00 0.00 30.16 3.71
2211 2933 0.605589 GTGAGGACTGTGGAGTGAGG 59.394 60.000 0.00 0.00 30.16 3.86
2212 2934 0.605589 GGTGAGGACTGTGGAGTGAG 59.394 60.000 0.00 0.00 30.16 3.51
2213 2935 0.105709 TGGTGAGGACTGTGGAGTGA 60.106 55.000 0.00 0.00 30.16 3.41
2214 2936 0.758734 TTGGTGAGGACTGTGGAGTG 59.241 55.000 0.00 0.00 30.16 3.51
2215 2937 0.759346 GTTGGTGAGGACTGTGGAGT 59.241 55.000 0.00 0.00 33.98 3.85
2216 2938 0.035458 GGTTGGTGAGGACTGTGGAG 59.965 60.000 0.00 0.00 0.00 3.86
2217 2939 1.754380 CGGTTGGTGAGGACTGTGGA 61.754 60.000 0.00 0.00 0.00 4.02
2218 2940 1.301716 CGGTTGGTGAGGACTGTGG 60.302 63.158 0.00 0.00 0.00 4.17
2219 2941 1.301716 CCGGTTGGTGAGGACTGTG 60.302 63.158 0.00 0.00 0.00 3.66
2220 2942 3.148084 CCGGTTGGTGAGGACTGT 58.852 61.111 0.00 0.00 0.00 3.55
2221 2943 2.358737 GCCGGTTGGTGAGGACTG 60.359 66.667 1.90 0.00 37.67 3.51
2222 2944 2.741878 TAGGCCGGTTGGTGAGGACT 62.742 60.000 1.90 0.00 46.83 3.85
2223 2945 2.288025 TAGGCCGGTTGGTGAGGAC 61.288 63.158 1.90 0.00 37.67 3.85
2224 2946 2.120940 TAGGCCGGTTGGTGAGGA 59.879 61.111 1.90 0.00 37.67 3.71
2225 2947 2.267961 GTAGGCCGGTTGGTGAGG 59.732 66.667 1.90 0.00 37.67 3.86
2226 2948 2.125673 CGTAGGCCGGTTGGTGAG 60.126 66.667 1.90 0.00 37.67 3.51
2227 2949 2.601067 TCGTAGGCCGGTTGGTGA 60.601 61.111 1.90 0.00 37.67 4.02
2228 2950 2.433664 GTCGTAGGCCGGTTGGTG 60.434 66.667 1.90 0.00 37.67 4.17
2237 2959 3.177249 GTCGTTGCGGTCGTAGGC 61.177 66.667 0.00 0.00 0.00 3.93
2238 2960 0.099259 TATGTCGTTGCGGTCGTAGG 59.901 55.000 0.00 0.00 0.00 3.18
2239 2961 1.898938 TTATGTCGTTGCGGTCGTAG 58.101 50.000 0.00 0.00 0.00 3.51
2240 2962 1.984990 GTTTATGTCGTTGCGGTCGTA 59.015 47.619 0.00 0.00 0.00 3.43
2241 2963 0.785979 GTTTATGTCGTTGCGGTCGT 59.214 50.000 0.00 0.00 0.00 4.34
2242 2964 1.058695 GAGTTTATGTCGTTGCGGTCG 59.941 52.381 0.00 0.00 0.00 4.79
2243 2965 1.058695 CGAGTTTATGTCGTTGCGGTC 59.941 52.381 0.00 0.00 32.62 4.79
2244 2966 1.065358 CGAGTTTATGTCGTTGCGGT 58.935 50.000 0.00 0.00 32.62 5.68
2245 2967 0.247145 GCGAGTTTATGTCGTTGCGG 60.247 55.000 0.00 0.00 39.69 5.69
2246 2968 0.247145 GGCGAGTTTATGTCGTTGCG 60.247 55.000 0.00 0.00 39.69 4.85
2247 2969 1.076332 AGGCGAGTTTATGTCGTTGC 58.924 50.000 0.00 0.00 39.69 4.17
2248 2970 2.724839 GCAAGGCGAGTTTATGTCGTTG 60.725 50.000 0.00 0.00 39.69 4.10
2249 2971 1.463444 GCAAGGCGAGTTTATGTCGTT 59.537 47.619 0.00 0.00 39.69 3.85
2250 2972 1.076332 GCAAGGCGAGTTTATGTCGT 58.924 50.000 0.00 0.00 39.69 4.34
2251 2973 0.373716 GGCAAGGCGAGTTTATGTCG 59.626 55.000 0.00 0.00 40.50 4.35
2252 2974 0.733150 GGGCAAGGCGAGTTTATGTC 59.267 55.000 0.00 0.00 0.00 3.06
2253 2975 0.037590 TGGGCAAGGCGAGTTTATGT 59.962 50.000 0.00 0.00 0.00 2.29
2254 2976 2.866872 TGGGCAAGGCGAGTTTATG 58.133 52.632 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.