>input_sequence_85334
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------------ATGGCGTCGGCGGCGAGCAGGAAGGCGCCGTCGCTGGTGGTGGCGGCGAGCGTGGGCGCCGTGGAGGC
GCTCAAGGACCAGGCGGGCCTGTGCCGCTGGGGCTACCCGCTCCGCTCGCTCTACCGCCACGCCGCCGCCGCGCCCAGAG
TCCGCGCCCTGTCCGCCTCGCTCTCCGAGGCCACCGCGGCCGCCGCTCCCCGGCCGGTGCCTTTGTCCGCGGAGGACGCG
AAGCTGCGAAAGGCGCACCACCTCGTCTGCTGGGGGCCCAACTGA-----------------------------------
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>chr6B_1_TraesCS6B01G162700
TATCCTTGACCACCTTGACAATGTGGAACGCGGGATGGAGTAAAGCCCGGACGTGAGCTCATCCGGCAGCACCCGGCCAG
GTCGTGCACGAGGTTGACACCGATGGACTCTCCTCCGCTCGCCTCT-GGCACTCCAGTGACACTCCATTTTTGGAAATGC
TGCAACCCGAGTTCGGTCGATC----------------------------------------------------------
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-----------ATGAACTCCCTGACCGCCTGACCGCCGCCACGGTGTGTAGCCGCTGTCGTGCGCTGTAAC-------GA
CTGCCGCGATGCTGGATGGCCGGTCAGGTATGCGGTCGCTGGTCAGCCAGGAGGCCACGGACGGTGTCATCTGTAGTATG
TGAGGTA--TTTTTT--TCAGGTATGTAGTATGTGAGGTATATATGACTTTGTATCTATACTATCTTTCGGTAGTCTTGG
ACGATCT--------------------------------------TGTACTTTGTCATTTCAAATATCGATAGAGAATCT
AATAGATAGCCAACTTTTACAATTTGCATCAATATTGATTCTTGGAATTTTCTTAATTTGTGTTTTACAACGCGTGTTTC
CTTTTTGCATGAATATTGATTCTTGATATTTTCTTAATTTATGTTTATGGCACAGGGGTAGTACTTTTAGCGAGGAGAGC
GTGACGTGGCTAGGGAGGACGGTGAATCCGCCTCCGCGAGTCTTAGAGCTAACAGCCCCCGGTTTGACAGAATGAATCAG
CTCCAGCCACTAATCTACGTTTGTCAACTTTCTTGTACCATACCCTCAAAAAAAAACTTTCTTGTAC--CGCCACGTCTC
GTCCGCCGCCCCGTTTCATCGGACGCGCCGTCCAAAACCAGCAGCCCGCTCCCCGTTTCCCCCTAGGCCGCTCCTCCGTT
TCGCCGCCTGTTTCGCGTCCCCGATCGCGTATAAAAATG--ATCTCCCCGCAGAGATCACCGACAAGACG--AGCCACTT
GAGC-AGTAAACCAGGTGCGGTGCAGAAGGAGAGATCGAGAGATCGAGAGAAAGAAAGCAATCGAGGGG------AGGAG
CTAGGGGCTGCGATGGCGTCGGCGGCGAGCAGGAAGGCGCCGTCGCTGGTGGTGGCGGCGAGCGTGGGCGCCGTGGAGGC
GCTCAAGGACCAGGCGGGCCTGTGCCGCTGGGGCTACCCGCTCCGCTCGCTCTACCGCCACGCCGCCGCCGCGCCCAGAG
TCCGCGCCCTGTCCGCCTCGCTCTCCGAGGCCACCGCGGCCGCCGCTCCCCGGCCGGTGCCTTTGTCCGCGGAGGACGCG
AAGCTGCGAAAGGCGCACCACCTCGTCTGCTGGGGGCCCAACTGAGCTCCTCTTCTCCGCTTCATGCCTCCGTCGGCACA
TGAGCATGCACAAGTAGCTGATGAATGCCTGTGCCAATGGTGAT----------------------------TGTTTCGC
CAGAGAAAGCAGAGGCGTCATTGTGTGCAGCGCCGGTGAACCGCTCCGGCCTCGGAGGAGGCCGGACGGTTCATCAACGC
TGCACTCAATGGCACCTTTGCGTCTCTTCCTCCTCTTCGTCTTCCCCAGTAGTAGTATCTCGTTGCATCTGGCTAGCTTA
GCTTCCGTAGACGCAAGCAGGAATCATGGC-TTAGTTTTTGAGACCGGGAGATCCCCATTA----TTTG----TAGTAAG
GAGTAGTACGAGGCGAGAGCCTGGCGATGGCGCCGGCTGTACTGCCGTGGGGAACTGACCAGCGTTGTTGTACTACAGAT
CGTACTATGCTTGTGTTGTGTCGA-----------------CCTCCTTGATTTATCATCTGGATCTCAAATCGGTCAGAG
ATCCATGAGCT-------CCATCGAGCTGGCGATGGCGTTTGGGCCAATGAAATGGTGACAGTAC--TACTACATC----
-------ACTTGCTAAACTGAACTGCCGGTAGTACCGAAATCAAATGGACGTAGCGAGTAGTAGTAGTAGTACAGAGTAG
TAGTACGAATTGTACTACTGCTAATGAACTG-AAATCGTCGTCATGCTGTAGTA-CAAGTCAGATGGCAGGTATTTCCTC
GCGAAAATGCAAGATGGCG---------------------------------AGTACTGCAGCGGTGACCGCACTGACAG
TTGACACCATTTGGGAACTTGCAGGTTATTATTCCCAGATCCTATATGCTTCCTCTTCATCATCTTTTGCTTGAGCACGT
CTAAAAGCGCCCGGAAGCATTTCATTTCCATGGAGAAGAAAATGTTATTACGGCGGGGACGACCAACGTTTTACACGATC
TACAATACGAGCAACGCAATAAGAAGCCAAGACATTACACAAAAGTGACCGTCCTCACTCCACAGTCCTCACCAACCGGC
CTACGACCGCAACGACATAAACTCGCCTTGCCCA
>chr1B_1
TATCCTTGACCACCTTGACAGTGTGGAACACGGGGTGGAGTAAAGCCCGGACGTTA-CTCATCCGGCAGCACCCGGCCAG
GTCATGCACGAGGTTGAGACCGATGGACCGTCCTCCGCTCGCCTCC-GGCACGCCGGTGACACTCCATTTTTTGAAGTGC
TGCAACCCGAGTTCGGTCGATC----------------------------------------------------------
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-----------ATGAACTCCCTGACC--------GCCGCCACGGTGTGTAGCCGTTGTCGTGCGCTGTAAC-------GA
CTATCGCGATGCTGGATGGCCGGTCAGGTATGCGGTCGCCGGTCAGGCAGGAGGCCACGGACGGTGTCGTCTGTAGTATG
TGAGGTATTTTTTTT--AAAGGTATGTAGTATGTGAGGTATATATGACTTCGTATCTATACTATCTTTCGGTAGTCTTGA
ACGATCT--------------------------------------TGTACTTTGTCATTTCAAATATCAATAGAGAATCT
AATAGATAACCAACTTTTACAATTTATATCAATATTGATTCTTGGAATTTTCTTAATTTATGCTTTACAACGCGTGTTTC
CTTTTTGCATGAATATTGATTCTTCATATTTTCTTAATTTGTGTTTATGGCGCAG-------------------------
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>chr4D_3
--TCCTTGACCACCTTGACAGTGTGGAGCACGGGGTGGAGTCAAGCCCAGACGTGAGCTCATCCGGCAGCACCCGACCGG
TTTGTGCACGAGGCGCTGATGCAC--ACCCTCTTCCGCTCGCCTCTGGGCACGTCGGTGACACTCCATTTTTGGATGTGC
TGCAACTCGAGTTCTGTCATGAACCA------------------------------------------------------
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-------------------CCTGACC--------GCCTCCACGGCGTGTAGCTGCTGCCGTGCGCAGTATTGGATGATGA
CTGCCGCGATGCTGGATGGCCGGTCAGGTATGGGGTCGCCGGTCAGGCACGAGGCAATGGACGGTGTCGTCTGTAGTATG
TGTG---TTTTTTTT--GCAGGTATGTAGTATGTGAGGTATATATGACTTTGTATCTAAACTATCTTTTGGTAGTTTTGG
ACGATCTGTAAACTGTAGAAGGTTTATGATGTGACTAGTAGAC----TAATTTGTCATTTCAAATATCGATAGAGAATAT
AATAGATAACCGACTTTTACAATTTGCATCAATATTGATTCTTGGAGTTGTCTTAATTTGTGTTTTACGGTGCTTGTTTC
CTATTTGCATGAGTATTGATTATTGGAATTTTCTTAATTTGTGTTTACGGCGCAG-------------------------
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>chr7B_3
--TCCTTGACCACCTTGACAGTGTGGAGCGCGGGGTGGAGTCAAGCCCGGACGTGAGCTCATCCGGCAGCACCCGGCCGG
GTCGTGCACGAGGCGCTGATGGAC--ACCCTCTTCCGCTCGCCTCTGGGCACGCCGGTGACACTCCATTTTTTGATGTGC
TGCAACTCGAGTTCAGTCATGAATGTTGGAAATATGAGCAATTTACCAAATGATTTTATTAACAGAAATACTAGATAAAA
CATGATTAATATAGTAGAGATAAAACAAGTCATGCGTTCTGACAGAGAGAAGGTAAATAGCATCTGCATATAGAGCAAGT
TGCATATATGAAATGGAATCTAACATATCTAGGGCAAATACTAGTACACGAAACTGTGGCAAGACATCTAACAAAAAGAA
GAACACATACGAGACAGCTGCAGCAAAAGCACTGGACTTGGGGTTGGTGTCCTCGCCAGCCATGTCGTCGAGGAGGTTGT
CGACGTCGGAGTCCGGGGAACTTGGCGGCGGAGGAGGAGCGCGCGTGGATGTCCCTTTTGTTCTCATGCTCATACAAGTG
GGGAAAGAAGCTCCCTTATAAGGAGGTCCAACTTCCACTAAACTAGCAATGTGGGACTAAACTTTAGTAGTATCCTTGCC
TTGCACAAATGGACTAAGTGGGCCTTTAGGATTTATTTAGAAATTTCTGAAATAGTTATTGAGCTGTCTTAAAATAGACT
AAATTCCAGCAATGAACTCCCTGCCC--------GCCTCCATGGTGTGTAGCCGCTGCCGTGCGCTGTATTGGATGATGA
CTGCCACGACGCTGGATGGCCGGTCAGGTATGGGGGCGCCGGTCAGGCAGGAGGCTGCGGACGGTGTCGTCTGTAGTATG
TGAG---TTTTTTTTTTGCAGGTCTGTAGTATGTGAGGTATATCTGACTTTATATCTAAACTATCTTTCGGTAGTTTTGG
ACGATCTGTGAACTGTAGAAGGTTTATGATGTGACCAGTAGACAGTGTACTTTGTCATTTCAAATATCGATAGAGAATCT
AATAGATAACCGACTTTTACAATTTGCATCAGTATTGATTCTTGGAATTTCCCTAACTTATGTTTTACGGCCCTTGTTTC
TTATTTGCATGAATATTGATTATTGGAATTTTCTTAACTTGTGTTTATGGCGCAG-------------------------
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>chr6D_736
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------------------------------------------------------AACTTTCTTGTGC--CGCCACGTCTT
GTCCGCCACCCCGTTTCATCGGACGCGACGTCCAAAACCGGCGGCCCGCTCCCCGTTT-CCCCTAGGCCGCTCCTCCGTT
TCGCCGCCTGTTTCGCGTCTCCCATCGCGTATAAAAATGGCATCTCCCCGCAGAGATCACCGACGAGACAACAGCCACTC
GAGC-AGTAAACCACGTGCGGCGCAGACGCA--------------GAGAGAAAGAAAGCAATCGAGGG------CAGGAG
CTAGGGGCTGCGATGGCGTCGGCGGCGAGCAGGAAGGCGCCGTCGCTGGTGGTGGCGGCGACCGTGGGCGCCGTGGAGGC
GCTCAAGGACCAGGCGGGCCTGTGCCGCTGGGGCTACCCGCTCCGCTCGCTCTACCGCCGCGCCGCCGCCGCGCCCAGGG
TCCGCGCCCTGTCCGCCTCGCTCTCCGATGCC------GCCGCCGCTCCCCGGCCGGCGCCTTTGTCCGCGGAGGACGCG
AAGCTGCGCAAGGCGCACCACCTCGTCTGCTGGGGGCCCAACTGAGCTCCTCTTCTCCGCTTCATGTCTCCATCGGCACA
TGAGCATAC--------CTGATGAATGCCTGTGTCAATGGTGAT----------------------------TGTTTCGC
CAGAGAAAGCAGAGACGTCATTGCGTGCAGCGCCGGTGAACCGCTCCGGCCTCGGTGGAGGA-GGACGGTTCATCAACGC
T-------ATGGCGCCTTTGCGTCTCTTCCTCCTCTTCGTCTTGCCCACTAGTAGTATCTCGTTGCATCTGGCTAGCCTA
GCTTCCGTAGACGCAAGC------------------TTTTGAGGCCGGGAGATCACCCGTCTTGTTTTTGTACTAGTAGT
ATGATGAGGTGTGCGA------GGCGATTACGATGGTTGTACTGCGGTGGAGAGGTGACCAGCGTTGTTGTACTACAGAT
CGTACTATGCTTGTGTTGTGTCGACTACT---TACTGCCCTCCTCCTTTATTTGTCATCTGGATCTCAAATCGGTCAGAG
ATCCATGAGCT-------CCGTCGAGCTGGCGATGGCGTTTGGG----------GTG------ACAGTAGTACATC----
-------GCTTGCTAAACTCAACTGCCAGTAGTACCGAAATCAAATGGACATAGCTAGTAGCAG------TACATAGTAG
TAGTACGAACTGTACTACTGCTAATGAACTTTAAATCGTTGCCATGCTGTAGTACCAAGTCAGATGGCA-ATGTTTCCTC
GCGAAAATGCAAGATGGC--------------------------------------------------------------
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>chr6A_736
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------------------------------------------------------AACTTTCTTGTACCGCGCCACGTCTT
GTCCGCCGCCCCGTTTCATCGGACGCGCCGTCCAAAACAGGCGGCCCGCTCCCTGTTTTCCCCTAGGCCGCTCCTCCCTT
TCGCCGCCTGTTTCGCGTCCCCGGTCGCGTATAAAAATGGCAAC-CCCCGCAGAGATCGCCGATGAGACGACATCCACTT
GAGCAAGTAAACCAGGTGCGGCGCAGACGCA--------------GAGAGAAAGAAAGGAAGCAAGGGGAGGAACAGGAT
CTAGGGGCTGCTATGGCGTCGGCGGCGAGCAGGAAGGCGCCGTCGCTGGTGGTGGCGGCAAGCGTGGGCGCCGTGGAGGC
GCTCAAGGACCAGGCGGGCCTGTGCCGCTGGGGCTACCCGCTCCGCTCGCTCTACCGCCACGCCGCCGCCGCGCCCAGGG
TCCGCGCCCTGTCCGCCTCGCTCTCCGAGGCAGCGGCCGCCGCGGCTCCCCGACCGGCGCCTTTGTCCGCGGAGGACGCG
AAGCTGCGCAAGGCGCACCACCTCGTCTGCTGGGGCCCCAACTGAGCTCCTTCTCTCCGCTTCATGTCACCACCGGCACA
TGAGCATATATAAGTAGCTGATGAATGCCTGTGTCAATGGTGTCGGGATTAGTAACAAAAGGCTTGCTTTGCTGTTTCGC
CGGAGAAAGCAGAGCCGTCATTGTGTGCAGCGCCGGTGAACCGCTCCGGCCTCGGAGGAGTA-GGACGGTTCATCAACGC
TGCACTCAATGGCACCTTTGCGTCTCTTCCTCCTCTTCGTCTTCCCCAGTAGTAGTGTCTGGTTGCATCTGGCTAGCTTA
GCTTCCGTAGACGCAAGCAGGAATCATGGCTTTAGCTTTTGAGGCCGGGACATCACCCATTTTCTTTTG----TAGTAGT
ATGATGAGGTGTGCGA------GGCTATTACGATGGTTGTACTGCGGTGGAGAACTGACCGGCGTTGTTGTACTACAGAT
CGTACTATGCTTATGTTGTGACTTGTGTCGACTACTGCCCTCCACCTTGATTTGTCATCTGGATCTCAAATCGGTCAGAG
ATCCATGAGGATTGAGGCCCGTGGGGCTGGCGACGGCCTTTGGG----------GGTGACAGTACAGTAGTACCCAAATC
AAATTCAACTTGCTAAACTCAACTGCCAGTAGTACCGAAATCAAACGGACGTACGTAGTACTAGCGAG------TAGGAG
TAGTACGAACTGTACTACTGCTAATGAACTG-AAATCTTCGTCATGCTGTAGTA-CAAGTCAGACGGCA-GTATTTCCTC
GCGAAAATGCAAGATGGAGCACGTCTAAATCCCGTCATGCTGTGTCGGGATTAGTACCGCAGCGGTGACCGCACTGACAG
TTCCCATC----GGGAACTTGCAGGTTATTATTCCCAGATCCTATATGCTTCTTCTTCTTCTTC----GCTTGAGCACGT
CTAAAAGCGCCCGGAAGCATTTCATTTTCATGGAGAAGAAAGTGTTATTA------------------------------
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>SNPs
--------------------S-------------S---------------------------------------------
-----------------S----------S-----------------------S--S--------------------S---
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--------------------------SSSSSSSS----------------------------------------------
---------------------------------------S------S---------------------S-----------
-----------------S--------------------------------------------------------------
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--------S-----------------------------------------------------------------------
----------------------------------------S----------S---SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------S
---------------------------------------S--S---------------S---------------------
----------------------------------------------------------------S---------------
---------------------S-----S-S-SSSSSSSSSSSSSS-----------------------------------
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------------------------------------------------------------------------------S-
--------------------------------S-S--S-------------------S----------------------
--------S---------------------------------------------------------S----S--------
-------S--S----------------------S----------------------------------------------
--------------S----------------------------------------------SS-----------------
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-----------------------------------S-------S----------S--SS-S-----------------SS
SS-SS-SSSSSS----SSSSSS------SS--SS--S--------S----S-----------------------------
-----------------------------------------------------S--------------------------
--------------------S-----------------------SSSSSSSSSS---------------S----------
-------------------S-------S---------------------------S--------SSSSSS----S-----
---------S-----------------------------------------------------------S----------
---------------------------------------------------------S----------------------
--SS--S-SSSS----------------------------------------S-----S--S--SSSS------------
---------------------------S-------------S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1275
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-------------------------------------------------------CCCCCGGTTTGACAGAATGA-----
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>reverse_2938
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---------------------------------------------------------CTCCACAGTCCTCACCAACC---
----------------------------------
