Multiple sequence alignment - TraesCS6B01G151500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G151500 chr6B 100.000 2615 0 0 1 2615 153311036 153313650 0.000000e+00 4830.0
1 TraesCS6B01G151500 chr6B 76.543 243 38 13 1902 2128 134011327 134011088 5.910000e-22 115.0
2 TraesCS6B01G151500 chr6B 98.000 50 1 0 2324 2373 153313314 153313363 1.290000e-13 87.9
3 TraesCS6B01G151500 chr6B 98.000 50 1 0 2279 2328 153313359 153313408 1.290000e-13 87.9
4 TraesCS6B01G151500 chr6D 91.761 1505 88 16 361 1852 80112057 80113538 0.000000e+00 2060.0
5 TraesCS6B01G151500 chr6D 85.374 294 40 3 2324 2615 308888937 308888645 4.230000e-78 302.0
6 TraesCS6B01G151500 chr6A 90.293 1195 59 26 618 1805 96813015 96814159 0.000000e+00 1511.0
7 TraesCS6B01G151500 chr6A 86.572 283 35 3 2335 2615 445572598 445572879 2.530000e-80 309.0
8 TraesCS6B01G151500 chr2B 93.043 460 14 6 1882 2328 789125370 789124916 0.000000e+00 656.0
9 TraesCS6B01G151500 chr2B 97.603 292 7 0 2324 2615 789124965 789124674 3.890000e-138 501.0
10 TraesCS6B01G151500 chr4D 91.954 435 23 7 1883 2305 172115373 172115807 1.340000e-167 599.0
11 TraesCS6B01G151500 chr3A 88.914 451 33 7 1882 2324 583874926 583874485 8.230000e-150 540.0
12 TraesCS6B01G151500 chr3A 92.833 293 19 2 2324 2615 583874530 583874239 8.650000e-115 424.0
13 TraesCS6B01G151500 chr3A 95.556 45 1 1 1902 1946 691001549 691001592 1.300000e-08 71.3
14 TraesCS6B01G151500 chr7A 84.516 465 44 12 1886 2325 553050603 553050142 4.000000e-118 435.0
15 TraesCS6B01G151500 chr7A 79.605 152 28 2 1 152 65458883 65459031 3.560000e-19 106.0
16 TraesCS6B01G151500 chr5A 78.428 547 101 11 1077 1616 276332986 276332450 8.960000e-90 340.0
17 TraesCS6B01G151500 chr5D 88.462 260 26 3 2359 2615 103179027 103178769 7.030000e-81 311.0
18 TraesCS6B01G151500 chr5D 78.235 170 31 5 16 184 345928412 345928248 1.280000e-18 104.0
19 TraesCS6B01G151500 chr5D 81.553 103 17 2 1883 1985 410285529 410285629 1.670000e-12 84.2
20 TraesCS6B01G151500 chr2D 93.578 109 5 2 1890 1998 609331533 609331427 7.490000e-36 161.0
21 TraesCS6B01G151500 chr7D 89.431 123 12 1 2494 2615 633884567 633884445 1.250000e-33 154.0
22 TraesCS6B01G151500 chr4B 90.323 93 7 2 1906 1998 673106376 673106286 1.270000e-23 121.0
23 TraesCS6B01G151500 chr3D 83.871 93 12 2 5 94 587377782 587377874 4.640000e-13 86.1
24 TraesCS6B01G151500 chr5B 81.553 103 17 2 1883 1985 492141726 492141826 1.670000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G151500 chr6B 153311036 153313650 2614 False 1668.6 4830 98.666667 1 2615 3 chr6B.!!$F1 2614
1 TraesCS6B01G151500 chr6D 80112057 80113538 1481 False 2060.0 2060 91.761000 361 1852 1 chr6D.!!$F1 1491
2 TraesCS6B01G151500 chr6A 96813015 96814159 1144 False 1511.0 1511 90.293000 618 1805 1 chr6A.!!$F1 1187
3 TraesCS6B01G151500 chr2B 789124674 789125370 696 True 578.5 656 95.323000 1882 2615 2 chr2B.!!$R1 733
4 TraesCS6B01G151500 chr3A 583874239 583874926 687 True 482.0 540 90.873500 1882 2615 2 chr3A.!!$R1 733
5 TraesCS6B01G151500 chr5A 276332450 276332986 536 True 340.0 340 78.428000 1077 1616 1 chr5A.!!$R1 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
177 178 0.038159 AAGAAGACCGCAACTCCTCG 60.038 55.0 0.0 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1863 1886 0.394352 AACGACATTGATCCTGGGGC 60.394 55.0 0.0 0.0 0.0 5.8 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.117372 CGAAGGACGTCGCGCAAC 62.117 66.667 8.75 0.00 37.22 4.17
23 24 3.774702 GAAGGACGTCGCGCAACC 61.775 66.667 8.75 1.96 0.00 3.77
24 25 4.595538 AAGGACGTCGCGCAACCA 62.596 61.111 8.75 0.00 0.00 3.67
29 30 3.943034 CGTCGCGCAACCACCAAA 61.943 61.111 8.75 0.00 0.00 3.28
30 31 2.642700 GTCGCGCAACCACCAAAT 59.357 55.556 8.75 0.00 0.00 2.32
31 32 1.729131 GTCGCGCAACCACCAAATG 60.729 57.895 8.75 0.00 0.00 2.32
32 33 1.894282 TCGCGCAACCACCAAATGA 60.894 52.632 8.75 0.00 0.00 2.57
33 34 1.442520 CGCGCAACCACCAAATGAG 60.443 57.895 8.75 0.00 0.00 2.90
34 35 1.080569 GCGCAACCACCAAATGAGG 60.081 57.895 0.30 0.00 0.00 3.86
35 36 1.523154 GCGCAACCACCAAATGAGGA 61.523 55.000 0.30 0.00 0.00 3.71
36 37 0.523072 CGCAACCACCAAATGAGGAG 59.477 55.000 0.00 0.00 0.00 3.69
37 38 0.890683 GCAACCACCAAATGAGGAGG 59.109 55.000 0.00 0.00 44.11 4.30
38 39 0.890683 CAACCACCAAATGAGGAGGC 59.109 55.000 0.00 0.00 42.50 4.70
39 40 0.482446 AACCACCAAATGAGGAGGCA 59.518 50.000 0.00 0.00 42.50 4.75
40 41 0.038744 ACCACCAAATGAGGAGGCAG 59.961 55.000 0.00 0.00 42.50 4.85
41 42 1.318158 CCACCAAATGAGGAGGCAGC 61.318 60.000 0.00 0.00 32.56 5.25
42 43 1.000396 ACCAAATGAGGAGGCAGCC 60.000 57.895 1.84 1.84 0.00 4.85
43 44 1.000521 CCAAATGAGGAGGCAGCCA 60.001 57.895 15.80 0.00 0.00 4.75
44 45 0.396695 CCAAATGAGGAGGCAGCCAT 60.397 55.000 15.80 0.00 0.00 4.40
45 46 1.133699 CCAAATGAGGAGGCAGCCATA 60.134 52.381 15.80 0.00 0.00 2.74
46 47 2.658285 CAAATGAGGAGGCAGCCATAA 58.342 47.619 15.80 0.00 0.00 1.90
47 48 3.025978 CAAATGAGGAGGCAGCCATAAA 58.974 45.455 15.80 0.00 0.00 1.40
48 49 2.355010 ATGAGGAGGCAGCCATAAAC 57.645 50.000 15.80 1.39 0.00 2.01
49 50 0.255890 TGAGGAGGCAGCCATAAACC 59.744 55.000 15.80 8.73 0.00 3.27
50 51 0.255890 GAGGAGGCAGCCATAAACCA 59.744 55.000 15.80 0.00 0.00 3.67
51 52 0.704076 AGGAGGCAGCCATAAACCAA 59.296 50.000 15.80 0.00 0.00 3.67
52 53 1.077005 AGGAGGCAGCCATAAACCAAA 59.923 47.619 15.80 0.00 0.00 3.28
53 54 1.478105 GGAGGCAGCCATAAACCAAAG 59.522 52.381 15.80 0.00 0.00 2.77
54 55 2.446435 GAGGCAGCCATAAACCAAAGA 58.554 47.619 15.80 0.00 0.00 2.52
55 56 2.164422 GAGGCAGCCATAAACCAAAGAC 59.836 50.000 15.80 0.00 0.00 3.01
56 57 1.135402 GGCAGCCATAAACCAAAGACG 60.135 52.381 6.55 0.00 0.00 4.18
57 58 1.135402 GCAGCCATAAACCAAAGACGG 60.135 52.381 0.00 0.00 0.00 4.79
58 59 2.432444 CAGCCATAAACCAAAGACGGA 58.568 47.619 0.00 0.00 0.00 4.69
59 60 2.420022 CAGCCATAAACCAAAGACGGAG 59.580 50.000 0.00 0.00 0.00 4.63
60 61 1.743394 GCCATAAACCAAAGACGGAGG 59.257 52.381 0.00 0.00 0.00 4.30
61 62 1.743394 CCATAAACCAAAGACGGAGGC 59.257 52.381 0.00 0.00 0.00 4.70
62 63 2.432444 CATAAACCAAAGACGGAGGCA 58.568 47.619 0.00 0.00 0.00 4.75
63 64 2.178912 TAAACCAAAGACGGAGGCAG 57.821 50.000 0.00 0.00 0.00 4.85
64 65 1.172812 AAACCAAAGACGGAGGCAGC 61.173 55.000 0.00 0.00 0.00 5.25
65 66 2.747855 CCAAAGACGGAGGCAGCC 60.748 66.667 1.84 1.84 0.00 4.85
66 67 2.747855 CAAAGACGGAGGCAGCCC 60.748 66.667 8.22 0.00 0.00 5.19
67 68 4.035102 AAAGACGGAGGCAGCCCC 62.035 66.667 8.22 8.43 0.00 5.80
74 75 3.011517 GAGGCAGCCCCAGAGGAA 61.012 66.667 8.22 0.00 38.24 3.36
75 76 2.532715 AGGCAGCCCCAGAGGAAA 60.533 61.111 8.22 0.00 38.24 3.13
76 77 2.142292 GAGGCAGCCCCAGAGGAAAA 62.142 60.000 8.22 0.00 38.24 2.29
77 78 1.228862 GGCAGCCCCAGAGGAAAAA 60.229 57.895 0.00 0.00 38.24 1.94
94 95 1.341080 AAAAGGCATGAGTTGGGTGG 58.659 50.000 0.00 0.00 0.00 4.61
95 96 0.482446 AAAGGCATGAGTTGGGTGGA 59.518 50.000 0.00 0.00 0.00 4.02
96 97 0.251341 AAGGCATGAGTTGGGTGGAC 60.251 55.000 0.00 0.00 0.00 4.02
97 98 2.040544 GGCATGAGTTGGGTGGACG 61.041 63.158 0.00 0.00 0.00 4.79
98 99 2.690778 GCATGAGTTGGGTGGACGC 61.691 63.158 0.00 0.00 0.00 5.19
99 100 2.040544 CATGAGTTGGGTGGACGCC 61.041 63.158 0.00 0.00 0.00 5.68
100 101 3.605749 ATGAGTTGGGTGGACGCCG 62.606 63.158 0.00 0.00 0.00 6.46
116 117 4.619227 CGCCACACCGACCAACCT 62.619 66.667 0.00 0.00 0.00 3.50
117 118 2.668550 GCCACACCGACCAACCTC 60.669 66.667 0.00 0.00 0.00 3.85
118 119 2.825982 CCACACCGACCAACCTCA 59.174 61.111 0.00 0.00 0.00 3.86
119 120 1.597027 CCACACCGACCAACCTCAC 60.597 63.158 0.00 0.00 0.00 3.51
120 121 1.597027 CACACCGACCAACCTCACC 60.597 63.158 0.00 0.00 0.00 4.02
121 122 2.067605 ACACCGACCAACCTCACCA 61.068 57.895 0.00 0.00 0.00 4.17
122 123 1.597027 CACCGACCAACCTCACCAC 60.597 63.158 0.00 0.00 0.00 4.16
123 124 2.032071 CCGACCAACCTCACCACC 59.968 66.667 0.00 0.00 0.00 4.61
124 125 2.813726 CCGACCAACCTCACCACCA 61.814 63.158 0.00 0.00 0.00 4.17
125 126 1.597027 CGACCAACCTCACCACCAC 60.597 63.158 0.00 0.00 0.00 4.16
126 127 1.837090 GACCAACCTCACCACCACT 59.163 57.895 0.00 0.00 0.00 4.00
127 128 1.053424 GACCAACCTCACCACCACTA 58.947 55.000 0.00 0.00 0.00 2.74
128 129 1.628846 GACCAACCTCACCACCACTAT 59.371 52.381 0.00 0.00 0.00 2.12
129 130 1.351017 ACCAACCTCACCACCACTATG 59.649 52.381 0.00 0.00 0.00 2.23
130 131 1.628340 CCAACCTCACCACCACTATGA 59.372 52.381 0.00 0.00 0.00 2.15
131 132 2.039746 CCAACCTCACCACCACTATGAA 59.960 50.000 0.00 0.00 0.00 2.57
132 133 3.338249 CAACCTCACCACCACTATGAAG 58.662 50.000 0.00 0.00 0.00 3.02
133 134 2.902608 ACCTCACCACCACTATGAAGA 58.097 47.619 0.00 0.00 0.00 2.87
134 135 3.454858 ACCTCACCACCACTATGAAGAT 58.545 45.455 0.00 0.00 0.00 2.40
135 136 3.452627 ACCTCACCACCACTATGAAGATC 59.547 47.826 0.00 0.00 0.00 2.75
136 137 3.708631 CCTCACCACCACTATGAAGATCT 59.291 47.826 0.00 0.00 0.00 2.75
137 138 4.163078 CCTCACCACCACTATGAAGATCTT 59.837 45.833 7.95 7.95 0.00 2.40
138 139 5.089970 TCACCACCACTATGAAGATCTTG 57.910 43.478 14.00 0.33 0.00 3.02
139 140 3.624861 CACCACCACTATGAAGATCTTGC 59.375 47.826 14.00 5.38 0.00 4.01
140 141 2.868583 CCACCACTATGAAGATCTTGCG 59.131 50.000 14.00 0.70 0.00 4.85
141 142 3.430790 CCACCACTATGAAGATCTTGCGA 60.431 47.826 14.00 0.00 0.00 5.10
142 143 3.801050 CACCACTATGAAGATCTTGCGAG 59.199 47.826 14.00 8.91 0.00 5.03
143 144 2.799412 CCACTATGAAGATCTTGCGAGC 59.201 50.000 14.00 0.00 0.00 5.03
144 145 2.799412 CACTATGAAGATCTTGCGAGCC 59.201 50.000 14.00 0.00 0.00 4.70
145 146 2.432146 ACTATGAAGATCTTGCGAGCCA 59.568 45.455 14.00 3.58 0.00 4.75
146 147 2.408271 ATGAAGATCTTGCGAGCCAA 57.592 45.000 14.00 0.00 0.00 4.52
147 148 2.183478 TGAAGATCTTGCGAGCCAAA 57.817 45.000 14.00 0.00 31.94 3.28
148 149 1.806542 TGAAGATCTTGCGAGCCAAAC 59.193 47.619 14.00 0.00 31.94 2.93
149 150 1.806542 GAAGATCTTGCGAGCCAAACA 59.193 47.619 14.00 0.00 31.94 2.83
150 151 2.119801 AGATCTTGCGAGCCAAACAT 57.880 45.000 0.00 0.00 31.94 2.71
151 152 1.741706 AGATCTTGCGAGCCAAACATG 59.258 47.619 0.00 0.00 31.94 3.21
152 153 0.813184 ATCTTGCGAGCCAAACATGG 59.187 50.000 0.00 0.00 31.94 3.66
162 163 2.926778 CCAAACATGGCCCAAAAGAA 57.073 45.000 0.00 0.00 0.00 2.52
163 164 2.769893 CCAAACATGGCCCAAAAGAAG 58.230 47.619 0.00 0.00 0.00 2.85
164 165 2.368221 CCAAACATGGCCCAAAAGAAGA 59.632 45.455 0.00 0.00 0.00 2.87
165 166 3.392882 CAAACATGGCCCAAAAGAAGAC 58.607 45.455 0.00 0.00 0.00 3.01
166 167 1.632589 ACATGGCCCAAAAGAAGACC 58.367 50.000 0.00 0.00 0.00 3.85
167 168 0.527565 CATGGCCCAAAAGAAGACCG 59.472 55.000 0.00 0.00 0.00 4.79
168 169 1.250840 ATGGCCCAAAAGAAGACCGC 61.251 55.000 0.00 0.00 0.00 5.68
169 170 1.901464 GGCCCAAAAGAAGACCGCA 60.901 57.895 0.00 0.00 0.00 5.69
170 171 1.460273 GGCCCAAAAGAAGACCGCAA 61.460 55.000 0.00 0.00 0.00 4.85
171 172 0.318699 GCCCAAAAGAAGACCGCAAC 60.319 55.000 0.00 0.00 0.00 4.17
172 173 1.318576 CCCAAAAGAAGACCGCAACT 58.681 50.000 0.00 0.00 0.00 3.16
173 174 1.266989 CCCAAAAGAAGACCGCAACTC 59.733 52.381 0.00 0.00 0.00 3.01
174 175 1.266989 CCAAAAGAAGACCGCAACTCC 59.733 52.381 0.00 0.00 0.00 3.85
175 176 2.222027 CAAAAGAAGACCGCAACTCCT 58.778 47.619 0.00 0.00 0.00 3.69
176 177 2.171341 AAAGAAGACCGCAACTCCTC 57.829 50.000 0.00 0.00 0.00 3.71
177 178 0.038159 AAGAAGACCGCAACTCCTCG 60.038 55.000 0.00 0.00 0.00 4.63
178 179 2.048127 AAGACCGCAACTCCTCGC 60.048 61.111 0.00 0.00 0.00 5.03
179 180 2.493907 GAAGACCGCAACTCCTCGCT 62.494 60.000 0.00 0.00 0.00 4.93
180 181 2.493907 AAGACCGCAACTCCTCGCTC 62.494 60.000 0.00 0.00 0.00 5.03
181 182 2.992114 ACCGCAACTCCTCGCTCT 60.992 61.111 0.00 0.00 0.00 4.09
182 183 2.507992 CCGCAACTCCTCGCTCTG 60.508 66.667 0.00 0.00 0.00 3.35
183 184 2.259818 CGCAACTCCTCGCTCTGT 59.740 61.111 0.00 0.00 0.00 3.41
184 185 1.373497 CGCAACTCCTCGCTCTGTT 60.373 57.895 0.00 0.00 0.00 3.16
185 186 1.621301 CGCAACTCCTCGCTCTGTTG 61.621 60.000 0.00 0.00 41.64 3.33
186 187 0.601311 GCAACTCCTCGCTCTGTTGT 60.601 55.000 0.00 0.00 41.04 3.32
187 188 1.423395 CAACTCCTCGCTCTGTTGTC 58.577 55.000 0.00 0.00 36.15 3.18
188 189 0.318762 AACTCCTCGCTCTGTTGTCC 59.681 55.000 0.00 0.00 0.00 4.02
189 190 0.827925 ACTCCTCGCTCTGTTGTCCA 60.828 55.000 0.00 0.00 0.00 4.02
190 191 0.389166 CTCCTCGCTCTGTTGTCCAC 60.389 60.000 0.00 0.00 0.00 4.02
191 192 1.734477 CCTCGCTCTGTTGTCCACG 60.734 63.158 0.00 0.00 0.00 4.94
192 193 1.734477 CTCGCTCTGTTGTCCACGG 60.734 63.158 0.00 0.00 0.00 4.94
193 194 2.029073 CGCTCTGTTGTCCACGGT 59.971 61.111 0.00 0.00 32.85 4.83
194 195 2.310233 CGCTCTGTTGTCCACGGTG 61.310 63.158 0.00 0.00 32.85 4.94
195 196 1.961277 GCTCTGTTGTCCACGGTGG 60.961 63.158 21.27 21.27 39.43 4.61
196 197 1.745890 CTCTGTTGTCCACGGTGGA 59.254 57.895 25.53 25.53 45.98 4.02
203 204 3.878358 TCCACGGTGGACACATCA 58.122 55.556 25.53 1.78 42.67 3.07
204 205 2.137692 TCCACGGTGGACACATCAA 58.862 52.632 25.53 0.98 42.67 2.57
205 206 0.690192 TCCACGGTGGACACATCAAT 59.310 50.000 25.53 0.00 42.67 2.57
206 207 1.073125 TCCACGGTGGACACATCAATT 59.927 47.619 25.53 0.00 42.67 2.32
207 208 2.303311 TCCACGGTGGACACATCAATTA 59.697 45.455 25.53 0.00 42.67 1.40
208 209 3.054728 TCCACGGTGGACACATCAATTAT 60.055 43.478 25.53 0.00 42.67 1.28
209 210 3.312421 CCACGGTGGACACATCAATTATC 59.688 47.826 22.77 0.00 40.96 1.75
210 211 3.938334 CACGGTGGACACATCAATTATCA 59.062 43.478 0.00 0.00 0.00 2.15
211 212 3.938963 ACGGTGGACACATCAATTATCAC 59.061 43.478 4.69 0.00 0.00 3.06
212 213 3.938334 CGGTGGACACATCAATTATCACA 59.062 43.478 4.69 0.00 0.00 3.58
213 214 4.201812 CGGTGGACACATCAATTATCACAC 60.202 45.833 4.69 0.00 0.00 3.82
214 215 4.096382 GGTGGACACATCAATTATCACACC 59.904 45.833 4.69 0.00 37.99 4.16
215 216 4.096382 GTGGACACATCAATTATCACACCC 59.904 45.833 0.00 0.00 0.00 4.61
216 217 3.312421 GGACACATCAATTATCACACCCG 59.688 47.826 0.00 0.00 0.00 5.28
217 218 3.938963 GACACATCAATTATCACACCCGT 59.061 43.478 0.00 0.00 0.00 5.28
218 219 4.331968 ACACATCAATTATCACACCCGTT 58.668 39.130 0.00 0.00 0.00 4.44
219 220 4.155826 ACACATCAATTATCACACCCGTTG 59.844 41.667 0.00 0.00 0.00 4.10
220 221 4.394610 CACATCAATTATCACACCCGTTGA 59.605 41.667 0.00 0.00 0.00 3.18
221 222 5.066375 CACATCAATTATCACACCCGTTGAT 59.934 40.000 0.00 0.00 36.91 2.57
222 223 5.652014 ACATCAATTATCACACCCGTTGATT 59.348 36.000 0.00 0.00 34.96 2.57
223 224 5.811399 TCAATTATCACACCCGTTGATTC 57.189 39.130 0.00 0.00 0.00 2.52
224 225 5.496556 TCAATTATCACACCCGTTGATTCT 58.503 37.500 0.00 0.00 0.00 2.40
225 226 5.584649 TCAATTATCACACCCGTTGATTCTC 59.415 40.000 0.00 0.00 0.00 2.87
226 227 2.010145 ATCACACCCGTTGATTCTCG 57.990 50.000 0.00 0.00 0.00 4.04
227 228 0.669318 TCACACCCGTTGATTCTCGC 60.669 55.000 0.00 0.00 0.00 5.03
228 229 0.948623 CACACCCGTTGATTCTCGCA 60.949 55.000 0.00 0.00 0.00 5.10
229 230 0.250124 ACACCCGTTGATTCTCGCAA 60.250 50.000 0.00 0.00 0.00 4.85
230 231 0.871722 CACCCGTTGATTCTCGCAAA 59.128 50.000 0.00 0.00 0.00 3.68
231 232 1.265635 CACCCGTTGATTCTCGCAAAA 59.734 47.619 0.00 0.00 0.00 2.44
232 233 1.265905 ACCCGTTGATTCTCGCAAAAC 59.734 47.619 0.00 0.00 0.00 2.43
233 234 1.265635 CCCGTTGATTCTCGCAAAACA 59.734 47.619 0.00 0.00 0.00 2.83
234 235 2.095263 CCCGTTGATTCTCGCAAAACAT 60.095 45.455 0.00 0.00 0.00 2.71
235 236 3.126171 CCCGTTGATTCTCGCAAAACATA 59.874 43.478 0.00 0.00 0.00 2.29
236 237 4.201910 CCCGTTGATTCTCGCAAAACATAT 60.202 41.667 0.00 0.00 0.00 1.78
237 238 4.963953 CCGTTGATTCTCGCAAAACATATC 59.036 41.667 0.00 0.00 0.00 1.63
238 239 5.220662 CCGTTGATTCTCGCAAAACATATCT 60.221 40.000 0.00 0.00 0.00 1.98
239 240 5.898606 CGTTGATTCTCGCAAAACATATCTC 59.101 40.000 0.00 0.00 0.00 2.75
240 241 6.237942 CGTTGATTCTCGCAAAACATATCTCT 60.238 38.462 0.00 0.00 0.00 3.10
241 242 6.834959 TGATTCTCGCAAAACATATCTCTC 57.165 37.500 0.00 0.00 0.00 3.20
242 243 6.577103 TGATTCTCGCAAAACATATCTCTCT 58.423 36.000 0.00 0.00 0.00 3.10
243 244 7.044181 TGATTCTCGCAAAACATATCTCTCTT 58.956 34.615 0.00 0.00 0.00 2.85
244 245 6.653273 TTCTCGCAAAACATATCTCTCTTG 57.347 37.500 0.00 0.00 0.00 3.02
245 246 5.724328 TCTCGCAAAACATATCTCTCTTGT 58.276 37.500 0.00 0.00 0.00 3.16
246 247 6.166279 TCTCGCAAAACATATCTCTCTTGTT 58.834 36.000 0.00 0.00 35.19 2.83
247 248 7.320399 TCTCGCAAAACATATCTCTCTTGTTA 58.680 34.615 0.00 0.00 33.44 2.41
248 249 7.275779 TCTCGCAAAACATATCTCTCTTGTTAC 59.724 37.037 0.00 0.00 33.44 2.50
249 250 6.871492 TCGCAAAACATATCTCTCTTGTTACA 59.129 34.615 0.00 0.00 33.44 2.41
250 251 7.386573 TCGCAAAACATATCTCTCTTGTTACAA 59.613 33.333 0.00 0.00 33.44 2.41
251 252 8.177663 CGCAAAACATATCTCTCTTGTTACAAT 58.822 33.333 0.00 0.00 33.44 2.71
276 277 7.064060 AAATTATTATTTGTGCAACTGCTGC 57.936 32.000 2.95 0.00 40.77 5.25
277 278 7.816513 TAAATTATTATTTGTGCAACTGCTGCA 59.183 29.630 0.85 0.85 44.75 4.41
284 285 3.193757 CAACTGCTGCATGGCGAT 58.806 55.556 1.31 0.00 34.52 4.58
285 286 1.509463 CAACTGCTGCATGGCGATT 59.491 52.632 1.31 0.00 34.52 3.34
286 287 0.108992 CAACTGCTGCATGGCGATTT 60.109 50.000 1.31 0.00 34.52 2.17
287 288 0.604578 AACTGCTGCATGGCGATTTT 59.395 45.000 1.31 0.00 34.52 1.82
288 289 1.462616 ACTGCTGCATGGCGATTTTA 58.537 45.000 1.31 0.00 34.52 1.52
289 290 2.026641 ACTGCTGCATGGCGATTTTAT 58.973 42.857 1.31 0.00 34.52 1.40
290 291 2.223641 ACTGCTGCATGGCGATTTTATG 60.224 45.455 1.31 0.00 34.52 1.90
291 292 1.750206 TGCTGCATGGCGATTTTATGT 59.250 42.857 0.00 0.00 34.52 2.29
292 293 2.121786 GCTGCATGGCGATTTTATGTG 58.878 47.619 0.00 0.00 0.00 3.21
293 294 2.223548 GCTGCATGGCGATTTTATGTGA 60.224 45.455 0.00 0.00 0.00 3.58
294 295 3.624900 CTGCATGGCGATTTTATGTGAG 58.375 45.455 0.00 0.00 0.00 3.51
295 296 3.277715 TGCATGGCGATTTTATGTGAGA 58.722 40.909 0.00 0.00 0.00 3.27
296 297 3.884693 TGCATGGCGATTTTATGTGAGAT 59.115 39.130 0.00 0.00 0.00 2.75
297 298 4.338964 TGCATGGCGATTTTATGTGAGATT 59.661 37.500 0.00 0.00 0.00 2.40
298 299 5.163530 TGCATGGCGATTTTATGTGAGATTT 60.164 36.000 0.00 0.00 0.00 2.17
299 300 5.174398 GCATGGCGATTTTATGTGAGATTTG 59.826 40.000 0.00 0.00 0.00 2.32
300 301 5.895636 TGGCGATTTTATGTGAGATTTGT 57.104 34.783 0.00 0.00 0.00 2.83
301 302 6.266168 TGGCGATTTTATGTGAGATTTGTT 57.734 33.333 0.00 0.00 0.00 2.83
302 303 7.384439 TGGCGATTTTATGTGAGATTTGTTA 57.616 32.000 0.00 0.00 0.00 2.41
303 304 7.995289 TGGCGATTTTATGTGAGATTTGTTAT 58.005 30.769 0.00 0.00 0.00 1.89
304 305 9.114952 TGGCGATTTTATGTGAGATTTGTTATA 57.885 29.630 0.00 0.00 0.00 0.98
305 306 9.382244 GGCGATTTTATGTGAGATTTGTTATAC 57.618 33.333 0.00 0.00 0.00 1.47
306 307 9.929722 GCGATTTTATGTGAGATTTGTTATACA 57.070 29.630 0.00 0.00 0.00 2.29
318 319 9.973246 GAGATTTGTTATACATATTATGTGCGG 57.027 33.333 17.68 0.00 44.60 5.69
319 320 8.450964 AGATTTGTTATACATATTATGTGCGGC 58.549 33.333 17.68 0.00 44.60 6.53
320 321 7.497925 TTTGTTATACATATTATGTGCGGCA 57.502 32.000 17.68 0.00 44.60 5.69
321 322 6.720012 TGTTATACATATTATGTGCGGCAG 57.280 37.500 17.68 0.00 44.60 4.85
322 323 6.227522 TGTTATACATATTATGTGCGGCAGT 58.772 36.000 17.68 0.00 44.60 4.40
323 324 6.708502 TGTTATACATATTATGTGCGGCAGTT 59.291 34.615 17.68 0.00 44.60 3.16
324 325 7.873505 TGTTATACATATTATGTGCGGCAGTTA 59.126 33.333 17.68 0.00 44.60 2.24
325 326 8.879759 GTTATACATATTATGTGCGGCAGTTAT 58.120 33.333 17.68 1.00 44.60 1.89
326 327 5.862924 ACATATTATGTGCGGCAGTTATC 57.137 39.130 1.18 0.00 43.01 1.75
327 328 5.551233 ACATATTATGTGCGGCAGTTATCT 58.449 37.500 1.18 0.00 43.01 1.98
328 329 5.639506 ACATATTATGTGCGGCAGTTATCTC 59.360 40.000 1.18 0.00 43.01 2.75
329 330 3.819564 TTATGTGCGGCAGTTATCTCT 57.180 42.857 1.18 0.00 0.00 3.10
330 331 2.698855 ATGTGCGGCAGTTATCTCTT 57.301 45.000 1.18 0.00 0.00 2.85
331 332 2.472695 TGTGCGGCAGTTATCTCTTT 57.527 45.000 1.18 0.00 0.00 2.52
332 333 2.346803 TGTGCGGCAGTTATCTCTTTC 58.653 47.619 1.18 0.00 0.00 2.62
333 334 1.324736 GTGCGGCAGTTATCTCTTTCG 59.675 52.381 1.18 0.00 0.00 3.46
334 335 0.931005 GCGGCAGTTATCTCTTTCGG 59.069 55.000 0.00 0.00 0.00 4.30
335 336 0.931005 CGGCAGTTATCTCTTTCGGC 59.069 55.000 0.00 0.00 0.00 5.54
336 337 1.300481 GGCAGTTATCTCTTTCGGCC 58.700 55.000 0.00 0.00 34.59 6.13
337 338 1.300481 GCAGTTATCTCTTTCGGCCC 58.700 55.000 0.00 0.00 0.00 5.80
338 339 1.134371 GCAGTTATCTCTTTCGGCCCT 60.134 52.381 0.00 0.00 0.00 5.19
339 340 2.827652 CAGTTATCTCTTTCGGCCCTC 58.172 52.381 0.00 0.00 0.00 4.30
340 341 1.763545 AGTTATCTCTTTCGGCCCTCC 59.236 52.381 0.00 0.00 0.00 4.30
341 342 1.129058 TTATCTCTTTCGGCCCTCCC 58.871 55.000 0.00 0.00 0.00 4.30
342 343 0.264955 TATCTCTTTCGGCCCTCCCT 59.735 55.000 0.00 0.00 0.00 4.20
343 344 1.051556 ATCTCTTTCGGCCCTCCCTC 61.052 60.000 0.00 0.00 0.00 4.30
344 345 2.687566 TCTTTCGGCCCTCCCTCC 60.688 66.667 0.00 0.00 0.00 4.30
345 346 3.798511 CTTTCGGCCCTCCCTCCC 61.799 72.222 0.00 0.00 0.00 4.30
365 366 2.210711 CCGCCCTCCTCCCTATGTC 61.211 68.421 0.00 0.00 0.00 3.06
385 386 5.809001 TGTCTAAATTCTGGCTCTGTTCAT 58.191 37.500 0.00 0.00 0.00 2.57
387 388 5.877012 GTCTAAATTCTGGCTCTGTTCATGA 59.123 40.000 0.00 0.00 0.00 3.07
400 402 3.625853 TGTTCATGAAGGTCACCACAAA 58.374 40.909 8.80 0.00 0.00 2.83
403 405 6.009589 TGTTCATGAAGGTCACCACAAATAT 58.990 36.000 8.80 0.00 0.00 1.28
406 408 6.484288 TCATGAAGGTCACCACAAATATCTT 58.516 36.000 0.00 0.00 0.00 2.40
460 462 8.021396 AGTTTCAACTAATTAAATTCCGTCTGC 58.979 33.333 0.00 0.00 37.52 4.26
469 471 0.981183 ATTCCGTCTGCCTGGTTGTA 59.019 50.000 0.00 0.00 0.00 2.41
474 476 3.199071 TCCGTCTGCCTGGTTGTAAATAT 59.801 43.478 0.00 0.00 0.00 1.28
500 502 9.632807 TTATCAAACTTTGTTAAATCCCATTCG 57.367 29.630 1.44 0.00 0.00 3.34
511 513 5.675684 AAATCCCATTCGTTTTTATGCCT 57.324 34.783 0.00 0.00 0.00 4.75
520 522 5.132897 TCGTTTTTATGCCTGCTTCATTT 57.867 34.783 0.00 0.00 0.00 2.32
532 534 4.864247 CCTGCTTCATTTTAAATTGGTCGG 59.136 41.667 9.56 5.25 0.00 4.79
534 536 5.465935 TGCTTCATTTTAAATTGGTCGGAC 58.534 37.500 9.56 0.00 0.00 4.79
543 545 0.887933 ATTGGTCGGACATTTGGTGC 59.112 50.000 10.76 0.00 33.95 5.01
544 546 1.175983 TTGGTCGGACATTTGGTGCC 61.176 55.000 10.76 0.00 33.68 5.01
548 550 0.251564 TCGGACATTTGGTGCCCATT 60.252 50.000 0.00 0.00 33.68 3.16
549 551 1.004862 TCGGACATTTGGTGCCCATTA 59.995 47.619 0.00 0.00 33.68 1.90
551 553 2.034558 CGGACATTTGGTGCCCATTATC 59.965 50.000 0.00 0.00 33.68 1.75
575 577 2.185350 CTGACGCCTAGCCCACTG 59.815 66.667 0.00 0.00 0.00 3.66
580 582 2.735772 CGCCTAGCCCACTGTCCAT 61.736 63.158 0.00 0.00 0.00 3.41
589 591 1.153188 CACTGTCCATGGGCGCATA 60.153 57.895 16.74 0.00 0.00 3.14
604 606 3.541711 GCGCATATATTTGTTGTCGTCC 58.458 45.455 0.30 0.00 0.00 4.79
610 612 6.566564 GCATATATTTGTTGTCGTCCATCTGG 60.567 42.308 0.00 0.00 0.00 3.86
614 616 3.973206 TGTTGTCGTCCATCTGGTAAT 57.027 42.857 0.00 0.00 36.34 1.89
695 700 1.480545 CCTGGTGGTACATCGTCATGA 59.519 52.381 0.00 0.00 46.67 3.07
747 752 0.456221 AGGCATAGACGACGACTTGG 59.544 55.000 4.95 0.00 0.00 3.61
749 754 1.135199 GGCATAGACGACGACTTGGAA 60.135 52.381 4.95 0.00 0.00 3.53
750 755 1.918609 GCATAGACGACGACTTGGAAC 59.081 52.381 4.95 0.00 0.00 3.62
751 756 2.670229 GCATAGACGACGACTTGGAACA 60.670 50.000 4.95 0.00 0.00 3.18
752 757 2.693797 TAGACGACGACTTGGAACAC 57.306 50.000 4.95 0.00 39.29 3.32
778 784 0.734253 CAGTCGCCAAGTCTTCTCGG 60.734 60.000 3.92 0.00 0.00 4.63
812 819 4.758692 CAGTTCACTGGCGTGTCT 57.241 55.556 0.00 6.70 41.89 3.41
976 988 1.052124 TTGACCCACCAACGACCTCT 61.052 55.000 0.00 0.00 0.00 3.69
986 998 3.068691 CGACCTCTTCCTCCGCCA 61.069 66.667 0.00 0.00 0.00 5.69
987 999 2.896443 GACCTCTTCCTCCGCCAG 59.104 66.667 0.00 0.00 0.00 4.85
1014 1027 1.374125 CGCCATGTCGTCCAACAGA 60.374 57.895 0.00 0.00 31.50 3.41
1018 1031 0.790207 CATGTCGTCCAACAGAACCG 59.210 55.000 0.00 0.00 31.50 4.44
1065 1078 1.289380 GTTCACCTTCCTCGTCGCT 59.711 57.895 0.00 0.00 0.00 4.93
1643 1666 1.536073 TTGGGTCTCTGACTCTGGCG 61.536 60.000 0.00 0.00 33.58 5.69
1733 1756 5.451023 GCAAATATTCGTATTGTTCGTGTGG 59.549 40.000 0.00 0.00 0.00 4.17
1743 1766 3.394674 TGTTCGTGTGGTGTGTATCAT 57.605 42.857 0.00 0.00 0.00 2.45
1805 1828 5.857471 TGCATTCTTGGGGATTAATTCAG 57.143 39.130 0.00 0.00 0.00 3.02
1807 1830 4.039609 GCATTCTTGGGGATTAATTCAGGG 59.960 45.833 0.00 0.00 0.00 4.45
1813 1836 3.535590 TGGGGATTAATTCAGGGGAATGT 59.464 43.478 0.00 0.00 42.87 2.71
1852 1875 2.483013 CCATGAGGAAATCCGTAGCGAA 60.483 50.000 0.00 0.00 42.08 4.70
1853 1876 2.288961 TGAGGAAATCCGTAGCGAAC 57.711 50.000 0.00 0.00 42.08 3.95
1854 1877 1.134907 TGAGGAAATCCGTAGCGAACC 60.135 52.381 0.00 0.00 42.08 3.62
1855 1878 0.177373 AGGAAATCCGTAGCGAACCC 59.823 55.000 0.00 0.00 42.08 4.11
1856 1879 0.108041 GGAAATCCGTAGCGAACCCA 60.108 55.000 0.00 0.00 0.00 4.51
1857 1880 1.004595 GAAATCCGTAGCGAACCCAC 58.995 55.000 0.00 0.00 0.00 4.61
1858 1881 0.611714 AAATCCGTAGCGAACCCACT 59.388 50.000 0.00 0.00 0.00 4.00
1859 1882 0.175073 AATCCGTAGCGAACCCACTC 59.825 55.000 0.00 0.00 0.00 3.51
1860 1883 0.968901 ATCCGTAGCGAACCCACTCA 60.969 55.000 0.00 0.00 0.00 3.41
1861 1884 0.968901 TCCGTAGCGAACCCACTCAT 60.969 55.000 0.00 0.00 0.00 2.90
1862 1885 0.742505 CCGTAGCGAACCCACTCATA 59.257 55.000 0.00 0.00 0.00 2.15
1863 1886 1.269102 CCGTAGCGAACCCACTCATAG 60.269 57.143 0.00 0.00 0.00 2.23
1864 1887 1.854227 GTAGCGAACCCACTCATAGC 58.146 55.000 0.00 0.00 0.00 2.97
1865 1888 0.750850 TAGCGAACCCACTCATAGCC 59.249 55.000 0.00 0.00 0.00 3.93
1866 1889 1.523938 GCGAACCCACTCATAGCCC 60.524 63.158 0.00 0.00 0.00 5.19
1867 1890 1.146263 CGAACCCACTCATAGCCCC 59.854 63.158 0.00 0.00 0.00 5.80
1868 1891 1.622607 CGAACCCACTCATAGCCCCA 61.623 60.000 0.00 0.00 0.00 4.96
1869 1892 0.181350 GAACCCACTCATAGCCCCAG 59.819 60.000 0.00 0.00 0.00 4.45
1870 1893 1.281925 AACCCACTCATAGCCCCAGG 61.282 60.000 0.00 0.00 0.00 4.45
1871 1894 1.384502 CCCACTCATAGCCCCAGGA 60.385 63.158 0.00 0.00 0.00 3.86
1872 1895 0.769776 CCCACTCATAGCCCCAGGAT 60.770 60.000 0.00 0.00 0.00 3.24
1873 1896 0.689623 CCACTCATAGCCCCAGGATC 59.310 60.000 0.00 0.00 0.00 3.36
1874 1897 1.427809 CACTCATAGCCCCAGGATCA 58.572 55.000 0.00 0.00 0.00 2.92
1875 1898 1.770658 CACTCATAGCCCCAGGATCAA 59.229 52.381 0.00 0.00 0.00 2.57
1876 1899 2.374504 CACTCATAGCCCCAGGATCAAT 59.625 50.000 0.00 0.00 0.00 2.57
1877 1900 2.374504 ACTCATAGCCCCAGGATCAATG 59.625 50.000 0.00 0.00 0.00 2.82
1878 1901 2.374504 CTCATAGCCCCAGGATCAATGT 59.625 50.000 0.00 0.00 0.00 2.71
1879 1902 2.373169 TCATAGCCCCAGGATCAATGTC 59.627 50.000 0.00 0.00 0.00 3.06
1880 1903 0.758734 TAGCCCCAGGATCAATGTCG 59.241 55.000 0.00 0.00 0.00 4.35
1960 1983 2.501316 TCATCATGAACTCACATCCGGT 59.499 45.455 0.00 0.00 0.00 5.28
1996 2029 1.505807 GCACACAGCACACACACAA 59.494 52.632 0.00 0.00 44.79 3.33
2056 2092 5.241506 GGGAGCTATAACATGCAGCAATAAA 59.758 40.000 0.00 0.00 37.78 1.40
2062 2098 8.655092 GCTATAACATGCAGCAATAAACAAAAA 58.345 29.630 0.00 0.00 35.35 1.94
2110 2146 2.238521 GGACATTGGGAAAGTGCTTCA 58.761 47.619 0.00 0.00 35.55 3.02
2248 2284 0.968405 TGCCTTCAACAAGGGAATGC 59.032 50.000 2.98 0.00 46.64 3.56
2263 2299 3.146066 GGAATGCTGTAAGAACACCACA 58.854 45.455 0.00 0.00 34.07 4.17
2309 2345 6.301687 GGTCAAACCTAAGAGTTTTCACTC 57.698 41.667 0.00 0.00 41.70 3.51
2310 2346 5.238868 GGTCAAACCTAAGAGTTTTCACTCC 59.761 44.000 0.00 0.00 42.03 3.85
2311 2347 7.938901 GGTCAAACCTAAGAGTTTTCACTCCG 61.939 46.154 0.00 0.00 42.03 4.63
2318 2354 2.059541 GAGTTTTCACTCCGGAACTCG 58.940 52.381 14.27 1.58 43.50 4.18
2319 2355 1.684983 AGTTTTCACTCCGGAACTCGA 59.315 47.619 5.23 0.00 42.43 4.04
2320 2356 2.101917 AGTTTTCACTCCGGAACTCGAA 59.898 45.455 5.23 2.91 42.43 3.71
2321 2357 3.064931 GTTTTCACTCCGGAACTCGAAT 58.935 45.455 5.23 0.00 42.43 3.34
2322 2358 2.649331 TTCACTCCGGAACTCGAATC 57.351 50.000 5.23 0.00 42.43 2.52
2323 2359 0.815734 TCACTCCGGAACTCGAATCC 59.184 55.000 5.23 6.81 42.43 3.01
2324 2360 0.179108 CACTCCGGAACTCGAATCCC 60.179 60.000 5.23 0.00 42.43 3.85
2325 2361 0.613853 ACTCCGGAACTCGAATCCCA 60.614 55.000 5.23 0.00 42.43 4.37
2326 2362 0.103208 CTCCGGAACTCGAATCCCAG 59.897 60.000 5.23 4.42 42.43 4.45
2327 2363 0.613853 TCCGGAACTCGAATCCCAGT 60.614 55.000 0.00 0.00 42.43 4.00
2328 2364 0.179108 CCGGAACTCGAATCCCAGTC 60.179 60.000 0.00 0.00 42.43 3.51
2329 2365 0.818296 CGGAACTCGAATCCCAGTCT 59.182 55.000 10.48 0.00 42.43 3.24
2330 2366 2.022195 CGGAACTCGAATCCCAGTCTA 58.978 52.381 10.48 0.00 42.43 2.59
2331 2367 2.033550 CGGAACTCGAATCCCAGTCTAG 59.966 54.545 10.48 0.00 42.43 2.43
2332 2368 2.362717 GGAACTCGAATCCCAGTCTAGG 59.637 54.545 5.75 0.00 0.00 3.02
2333 2369 2.830651 ACTCGAATCCCAGTCTAGGT 57.169 50.000 0.00 0.00 0.00 3.08
2334 2370 2.657143 ACTCGAATCCCAGTCTAGGTC 58.343 52.381 0.00 0.00 0.00 3.85
2335 2371 2.025226 ACTCGAATCCCAGTCTAGGTCA 60.025 50.000 0.00 0.00 0.00 4.02
2336 2372 3.024547 CTCGAATCCCAGTCTAGGTCAA 58.975 50.000 0.00 0.00 0.00 3.18
2337 2373 3.437213 TCGAATCCCAGTCTAGGTCAAA 58.563 45.455 0.00 0.00 0.00 2.69
2338 2374 3.194968 TCGAATCCCAGTCTAGGTCAAAC 59.805 47.826 0.00 0.00 0.00 2.93
2339 2375 3.679083 CGAATCCCAGTCTAGGTCAAACC 60.679 52.174 0.00 0.00 38.99 3.27
2370 2406 0.613853 ACTCCGGAACTCGAATCCCA 60.614 55.000 5.23 0.00 42.43 4.37
2416 2452 0.713883 GTCACAATGTACTGTCGCCG 59.286 55.000 0.00 0.00 0.00 6.46
2525 2561 4.130857 CAACCGGGCATAACACATATACA 58.869 43.478 6.32 0.00 0.00 2.29
2548 2584 2.425592 CAGACCGGAGCACAACCA 59.574 61.111 9.46 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.117372 GTTGCGCGACGTCCTTCG 62.117 66.667 12.10 12.11 46.00 3.79
12 13 3.248630 ATTTGGTGGTTGCGCGACG 62.249 57.895 21.21 0.00 0.00 5.12
13 14 1.729131 CATTTGGTGGTTGCGCGAC 60.729 57.895 19.96 19.96 0.00 5.19
14 15 1.851021 CTCATTTGGTGGTTGCGCGA 61.851 55.000 12.10 0.00 0.00 5.87
15 16 1.442520 CTCATTTGGTGGTTGCGCG 60.443 57.895 0.00 0.00 0.00 6.86
16 17 1.080569 CCTCATTTGGTGGTTGCGC 60.081 57.895 0.00 0.00 0.00 6.09
17 18 0.523072 CTCCTCATTTGGTGGTTGCG 59.477 55.000 0.00 0.00 0.00 4.85
18 19 0.890683 CCTCCTCATTTGGTGGTTGC 59.109 55.000 0.00 0.00 36.35 4.17
19 20 0.890683 GCCTCCTCATTTGGTGGTTG 59.109 55.000 0.00 0.00 41.45 3.77
20 21 0.482446 TGCCTCCTCATTTGGTGGTT 59.518 50.000 0.00 0.00 41.45 3.67
21 22 0.038744 CTGCCTCCTCATTTGGTGGT 59.961 55.000 0.00 0.00 41.45 4.16
22 23 1.318158 GCTGCCTCCTCATTTGGTGG 61.318 60.000 0.00 0.00 42.10 4.61
23 24 1.318158 GGCTGCCTCCTCATTTGGTG 61.318 60.000 12.43 0.00 0.00 4.17
24 25 1.000396 GGCTGCCTCCTCATTTGGT 60.000 57.895 12.43 0.00 0.00 3.67
25 26 0.396695 ATGGCTGCCTCCTCATTTGG 60.397 55.000 21.03 0.00 0.00 3.28
26 27 2.353357 TATGGCTGCCTCCTCATTTG 57.647 50.000 21.03 0.00 0.00 2.32
27 28 3.026694 GTTTATGGCTGCCTCCTCATTT 58.973 45.455 21.03 0.00 0.00 2.32
28 29 2.659428 GTTTATGGCTGCCTCCTCATT 58.341 47.619 21.03 0.00 0.00 2.57
29 30 1.133668 GGTTTATGGCTGCCTCCTCAT 60.134 52.381 21.03 6.96 0.00 2.90
30 31 0.255890 GGTTTATGGCTGCCTCCTCA 59.744 55.000 21.03 0.00 0.00 3.86
31 32 0.255890 TGGTTTATGGCTGCCTCCTC 59.744 55.000 21.03 6.57 0.00 3.71
32 33 0.704076 TTGGTTTATGGCTGCCTCCT 59.296 50.000 21.03 7.20 0.00 3.69
33 34 1.478105 CTTTGGTTTATGGCTGCCTCC 59.522 52.381 21.03 13.84 0.00 4.30
34 35 2.164422 GTCTTTGGTTTATGGCTGCCTC 59.836 50.000 21.03 5.20 0.00 4.70
35 36 2.171003 GTCTTTGGTTTATGGCTGCCT 58.829 47.619 21.03 8.02 0.00 4.75
36 37 1.135402 CGTCTTTGGTTTATGGCTGCC 60.135 52.381 12.87 12.87 0.00 4.85
37 38 1.135402 CCGTCTTTGGTTTATGGCTGC 60.135 52.381 0.00 0.00 0.00 5.25
38 39 2.420022 CTCCGTCTTTGGTTTATGGCTG 59.580 50.000 0.00 0.00 0.00 4.85
39 40 2.618045 CCTCCGTCTTTGGTTTATGGCT 60.618 50.000 0.00 0.00 0.00 4.75
40 41 1.743394 CCTCCGTCTTTGGTTTATGGC 59.257 52.381 0.00 0.00 0.00 4.40
41 42 1.743394 GCCTCCGTCTTTGGTTTATGG 59.257 52.381 0.00 0.00 0.00 2.74
42 43 2.420022 CTGCCTCCGTCTTTGGTTTATG 59.580 50.000 0.00 0.00 0.00 1.90
43 44 2.711542 CTGCCTCCGTCTTTGGTTTAT 58.288 47.619 0.00 0.00 0.00 1.40
44 45 1.880646 GCTGCCTCCGTCTTTGGTTTA 60.881 52.381 0.00 0.00 0.00 2.01
45 46 1.172812 GCTGCCTCCGTCTTTGGTTT 61.173 55.000 0.00 0.00 0.00 3.27
46 47 1.600916 GCTGCCTCCGTCTTTGGTT 60.601 57.895 0.00 0.00 0.00 3.67
47 48 2.032681 GCTGCCTCCGTCTTTGGT 59.967 61.111 0.00 0.00 0.00 3.67
48 49 2.747855 GGCTGCCTCCGTCTTTGG 60.748 66.667 12.43 0.00 0.00 3.28
49 50 2.747855 GGGCTGCCTCCGTCTTTG 60.748 66.667 19.68 0.00 0.00 2.77
50 51 4.035102 GGGGCTGCCTCCGTCTTT 62.035 66.667 19.68 0.00 0.00 2.52
57 58 2.142292 TTTTCCTCTGGGGCTGCCTC 62.142 60.000 19.68 16.49 34.39 4.70
58 59 1.729267 TTTTTCCTCTGGGGCTGCCT 61.729 55.000 19.68 0.00 34.39 4.75
59 60 1.228862 TTTTTCCTCTGGGGCTGCC 60.229 57.895 11.05 11.05 34.39 4.85
60 61 4.519610 TTTTTCCTCTGGGGCTGC 57.480 55.556 0.00 0.00 34.39 5.25
74 75 1.693606 CCACCCAACTCATGCCTTTTT 59.306 47.619 0.00 0.00 0.00 1.94
75 76 1.133199 TCCACCCAACTCATGCCTTTT 60.133 47.619 0.00 0.00 0.00 2.27
76 77 0.482446 TCCACCCAACTCATGCCTTT 59.518 50.000 0.00 0.00 0.00 3.11
77 78 0.251341 GTCCACCCAACTCATGCCTT 60.251 55.000 0.00 0.00 0.00 4.35
78 79 1.380302 GTCCACCCAACTCATGCCT 59.620 57.895 0.00 0.00 0.00 4.75
79 80 2.040544 CGTCCACCCAACTCATGCC 61.041 63.158 0.00 0.00 0.00 4.40
80 81 2.690778 GCGTCCACCCAACTCATGC 61.691 63.158 0.00 0.00 0.00 4.06
81 82 2.040544 GGCGTCCACCCAACTCATG 61.041 63.158 0.00 0.00 0.00 3.07
82 83 2.351276 GGCGTCCACCCAACTCAT 59.649 61.111 0.00 0.00 0.00 2.90
83 84 4.308458 CGGCGTCCACCCAACTCA 62.308 66.667 0.00 0.00 0.00 3.41
99 100 4.619227 AGGTTGGTCGGTGTGGCG 62.619 66.667 0.00 0.00 0.00 5.69
100 101 2.668550 GAGGTTGGTCGGTGTGGC 60.669 66.667 0.00 0.00 0.00 5.01
101 102 1.597027 GTGAGGTTGGTCGGTGTGG 60.597 63.158 0.00 0.00 0.00 4.17
102 103 1.597027 GGTGAGGTTGGTCGGTGTG 60.597 63.158 0.00 0.00 0.00 3.82
103 104 2.067605 TGGTGAGGTTGGTCGGTGT 61.068 57.895 0.00 0.00 0.00 4.16
104 105 1.597027 GTGGTGAGGTTGGTCGGTG 60.597 63.158 0.00 0.00 0.00 4.94
105 106 2.814835 GGTGGTGAGGTTGGTCGGT 61.815 63.158 0.00 0.00 0.00 4.69
106 107 2.032071 GGTGGTGAGGTTGGTCGG 59.968 66.667 0.00 0.00 0.00 4.79
107 108 1.597027 GTGGTGGTGAGGTTGGTCG 60.597 63.158 0.00 0.00 0.00 4.79
108 109 1.053424 TAGTGGTGGTGAGGTTGGTC 58.947 55.000 0.00 0.00 0.00 4.02
109 110 1.351017 CATAGTGGTGGTGAGGTTGGT 59.649 52.381 0.00 0.00 0.00 3.67
110 111 1.628340 TCATAGTGGTGGTGAGGTTGG 59.372 52.381 0.00 0.00 0.00 3.77
111 112 3.007940 TCTTCATAGTGGTGGTGAGGTTG 59.992 47.826 0.00 0.00 0.00 3.77
112 113 3.248024 TCTTCATAGTGGTGGTGAGGTT 58.752 45.455 0.00 0.00 0.00 3.50
113 114 2.902608 TCTTCATAGTGGTGGTGAGGT 58.097 47.619 0.00 0.00 0.00 3.85
114 115 3.708631 AGATCTTCATAGTGGTGGTGAGG 59.291 47.826 0.00 0.00 0.00 3.86
115 116 5.114780 CAAGATCTTCATAGTGGTGGTGAG 58.885 45.833 4.57 0.00 0.00 3.51
116 117 4.623886 GCAAGATCTTCATAGTGGTGGTGA 60.624 45.833 4.57 0.00 0.00 4.02
117 118 3.624861 GCAAGATCTTCATAGTGGTGGTG 59.375 47.826 4.57 0.00 0.00 4.17
118 119 3.679917 CGCAAGATCTTCATAGTGGTGGT 60.680 47.826 4.57 0.00 43.02 4.16
119 120 2.868583 CGCAAGATCTTCATAGTGGTGG 59.131 50.000 4.57 0.00 43.02 4.61
120 121 3.785486 TCGCAAGATCTTCATAGTGGTG 58.215 45.455 4.57 0.00 45.01 4.17
129 130 6.727594 CCATGTTTGGCTCGCAAGATCTTC 62.728 50.000 4.57 0.02 39.17 2.87
130 131 4.979258 CCATGTTTGGCTCGCAAGATCTT 61.979 47.826 0.88 0.88 39.17 2.40
131 132 3.518823 CCATGTTTGGCTCGCAAGATCT 61.519 50.000 0.00 0.00 39.17 2.75
132 133 1.202222 CCATGTTTGGCTCGCAAGATC 60.202 52.381 0.00 0.00 39.17 2.75
133 134 0.813184 CCATGTTTGGCTCGCAAGAT 59.187 50.000 0.00 0.00 39.17 2.40
134 135 2.256391 CCATGTTTGGCTCGCAAGA 58.744 52.632 0.00 0.00 39.60 3.02
135 136 4.874534 CCATGTTTGGCTCGCAAG 57.125 55.556 0.00 0.00 35.85 4.01
143 144 2.368221 TCTTCTTTTGGGCCATGTTTGG 59.632 45.455 7.26 0.00 46.66 3.28
144 145 3.392882 GTCTTCTTTTGGGCCATGTTTG 58.607 45.455 7.26 0.00 0.00 2.93
145 146 2.368548 GGTCTTCTTTTGGGCCATGTTT 59.631 45.455 7.26 0.00 0.00 2.83
146 147 1.970640 GGTCTTCTTTTGGGCCATGTT 59.029 47.619 7.26 0.00 0.00 2.71
147 148 1.632589 GGTCTTCTTTTGGGCCATGT 58.367 50.000 7.26 0.00 0.00 3.21
148 149 0.527565 CGGTCTTCTTTTGGGCCATG 59.472 55.000 7.26 0.54 0.00 3.66
149 150 1.250840 GCGGTCTTCTTTTGGGCCAT 61.251 55.000 7.26 0.00 0.00 4.40
150 151 1.901464 GCGGTCTTCTTTTGGGCCA 60.901 57.895 0.00 0.00 0.00 5.36
151 152 1.460273 TTGCGGTCTTCTTTTGGGCC 61.460 55.000 0.00 0.00 0.00 5.80
152 153 0.318699 GTTGCGGTCTTCTTTTGGGC 60.319 55.000 0.00 0.00 0.00 5.36
153 154 1.266989 GAGTTGCGGTCTTCTTTTGGG 59.733 52.381 0.00 0.00 0.00 4.12
154 155 1.266989 GGAGTTGCGGTCTTCTTTTGG 59.733 52.381 0.00 0.00 0.00 3.28
155 156 2.222027 AGGAGTTGCGGTCTTCTTTTG 58.778 47.619 0.00 0.00 0.00 2.44
156 157 2.495084 GAGGAGTTGCGGTCTTCTTTT 58.505 47.619 0.00 0.00 0.00 2.27
157 158 1.605712 CGAGGAGTTGCGGTCTTCTTT 60.606 52.381 0.00 0.00 0.00 2.52
158 159 0.038159 CGAGGAGTTGCGGTCTTCTT 60.038 55.000 0.00 0.00 0.00 2.52
159 160 1.587054 CGAGGAGTTGCGGTCTTCT 59.413 57.895 0.00 0.00 0.00 2.85
160 161 2.095252 GCGAGGAGTTGCGGTCTTC 61.095 63.158 0.00 0.00 0.00 2.87
161 162 2.048127 GCGAGGAGTTGCGGTCTT 60.048 61.111 0.00 0.00 0.00 3.01
162 163 2.992114 AGCGAGGAGTTGCGGTCT 60.992 61.111 0.00 0.00 38.25 3.85
163 164 2.507324 GAGCGAGGAGTTGCGGTC 60.507 66.667 0.00 0.00 45.69 4.79
164 165 2.992114 AGAGCGAGGAGTTGCGGT 60.992 61.111 0.00 0.00 41.30 5.68
165 166 2.507992 CAGAGCGAGGAGTTGCGG 60.508 66.667 0.00 0.00 38.25 5.69
166 167 1.373497 AACAGAGCGAGGAGTTGCG 60.373 57.895 0.00 0.00 38.25 4.85
167 168 0.601311 ACAACAGAGCGAGGAGTTGC 60.601 55.000 0.00 0.00 43.74 4.17
168 169 1.423395 GACAACAGAGCGAGGAGTTG 58.577 55.000 0.00 0.00 45.02 3.16
169 170 0.318762 GGACAACAGAGCGAGGAGTT 59.681 55.000 0.00 0.00 0.00 3.01
170 171 0.827925 TGGACAACAGAGCGAGGAGT 60.828 55.000 0.00 0.00 0.00 3.85
171 172 0.389166 GTGGACAACAGAGCGAGGAG 60.389 60.000 0.00 0.00 0.00 3.69
172 173 1.666011 GTGGACAACAGAGCGAGGA 59.334 57.895 0.00 0.00 0.00 3.71
173 174 1.734477 CGTGGACAACAGAGCGAGG 60.734 63.158 0.00 0.00 0.00 4.63
174 175 1.734477 CCGTGGACAACAGAGCGAG 60.734 63.158 0.00 0.00 0.00 5.03
175 176 2.338620 CCGTGGACAACAGAGCGA 59.661 61.111 0.00 0.00 0.00 4.93
176 177 2.029073 ACCGTGGACAACAGAGCG 59.971 61.111 0.00 0.00 0.00 5.03
177 178 1.961277 CCACCGTGGACAACAGAGC 60.961 63.158 12.68 0.00 40.96 4.09
178 179 1.745890 TCCACCGTGGACAACAGAG 59.254 57.895 16.73 0.00 42.67 3.35
179 180 3.957919 TCCACCGTGGACAACAGA 58.042 55.556 16.73 0.00 42.67 3.41
186 187 0.690192 ATTGATGTGTCCACCGTGGA 59.310 50.000 16.73 16.73 45.98 4.02
187 188 1.533625 AATTGATGTGTCCACCGTGG 58.466 50.000 11.73 11.73 39.43 4.94
188 189 3.938334 TGATAATTGATGTGTCCACCGTG 59.062 43.478 0.00 0.00 0.00 4.94
189 190 3.938963 GTGATAATTGATGTGTCCACCGT 59.061 43.478 0.00 0.00 0.00 4.83
190 191 3.938334 TGTGATAATTGATGTGTCCACCG 59.062 43.478 0.00 0.00 0.00 4.94
191 192 4.096382 GGTGTGATAATTGATGTGTCCACC 59.904 45.833 0.00 0.00 32.73 4.61
192 193 4.096382 GGGTGTGATAATTGATGTGTCCAC 59.904 45.833 0.00 0.00 0.00 4.02
193 194 4.269183 GGGTGTGATAATTGATGTGTCCA 58.731 43.478 0.00 0.00 0.00 4.02
194 195 3.312421 CGGGTGTGATAATTGATGTGTCC 59.688 47.826 0.00 0.00 0.00 4.02
195 196 3.938963 ACGGGTGTGATAATTGATGTGTC 59.061 43.478 0.00 0.00 0.00 3.67
196 197 3.950397 ACGGGTGTGATAATTGATGTGT 58.050 40.909 0.00 0.00 0.00 3.72
197 198 4.394610 TCAACGGGTGTGATAATTGATGTG 59.605 41.667 0.00 0.00 0.00 3.21
198 199 4.584874 TCAACGGGTGTGATAATTGATGT 58.415 39.130 0.00 0.00 0.00 3.06
199 200 5.756195 ATCAACGGGTGTGATAATTGATG 57.244 39.130 0.00 0.00 35.89 3.07
200 201 6.122277 AGAATCAACGGGTGTGATAATTGAT 58.878 36.000 0.00 0.00 38.17 2.57
201 202 5.496556 AGAATCAACGGGTGTGATAATTGA 58.503 37.500 0.00 0.00 0.00 2.57
202 203 5.502382 CGAGAATCAACGGGTGTGATAATTG 60.502 44.000 0.00 0.00 33.17 2.32
203 204 4.570772 CGAGAATCAACGGGTGTGATAATT 59.429 41.667 0.00 0.00 33.17 1.40
204 205 4.119862 CGAGAATCAACGGGTGTGATAAT 58.880 43.478 0.00 0.00 33.17 1.28
205 206 3.517602 CGAGAATCAACGGGTGTGATAA 58.482 45.455 0.00 0.00 33.17 1.75
206 207 2.737359 GCGAGAATCAACGGGTGTGATA 60.737 50.000 0.00 0.00 33.17 2.15
207 208 2.007049 GCGAGAATCAACGGGTGTGAT 61.007 52.381 0.00 0.00 33.17 3.06
208 209 0.669318 GCGAGAATCAACGGGTGTGA 60.669 55.000 0.00 0.00 33.17 3.58
209 210 0.948623 TGCGAGAATCAACGGGTGTG 60.949 55.000 0.00 0.00 33.17 3.82
210 211 0.250124 TTGCGAGAATCAACGGGTGT 60.250 50.000 0.00 0.00 33.17 4.16
211 212 0.871722 TTTGCGAGAATCAACGGGTG 59.128 50.000 0.00 0.00 33.17 4.61
212 213 1.265905 GTTTTGCGAGAATCAACGGGT 59.734 47.619 0.00 0.00 33.17 5.28
213 214 1.265635 TGTTTTGCGAGAATCAACGGG 59.734 47.619 0.00 0.00 33.17 5.28
214 215 2.679355 TGTTTTGCGAGAATCAACGG 57.321 45.000 0.00 0.00 33.17 4.44
215 216 5.799960 AGATATGTTTTGCGAGAATCAACG 58.200 37.500 0.00 0.00 33.17 4.10
216 217 7.009568 AGAGATATGTTTTGCGAGAATCAAC 57.990 36.000 0.00 0.00 33.17 3.18
217 218 7.044181 AGAGAGATATGTTTTGCGAGAATCAA 58.956 34.615 0.00 0.00 33.17 2.57
218 219 6.577103 AGAGAGATATGTTTTGCGAGAATCA 58.423 36.000 0.00 0.00 33.17 2.57
219 220 7.010923 ACAAGAGAGATATGTTTTGCGAGAATC 59.989 37.037 0.00 0.00 0.00 2.52
220 221 6.820656 ACAAGAGAGATATGTTTTGCGAGAAT 59.179 34.615 0.00 0.00 0.00 2.40
221 222 6.166279 ACAAGAGAGATATGTTTTGCGAGAA 58.834 36.000 0.00 0.00 0.00 2.87
222 223 5.724328 ACAAGAGAGATATGTTTTGCGAGA 58.276 37.500 0.00 0.00 0.00 4.04
223 224 6.414408 AACAAGAGAGATATGTTTTGCGAG 57.586 37.500 0.00 0.00 33.73 5.03
224 225 6.871492 TGTAACAAGAGAGATATGTTTTGCGA 59.129 34.615 0.00 0.00 38.22 5.10
225 226 7.060600 TGTAACAAGAGAGATATGTTTTGCG 57.939 36.000 0.00 0.00 38.22 4.85
267 268 0.108992 AAATCGCCATGCAGCAGTTG 60.109 50.000 0.00 0.00 0.00 3.16
268 269 0.604578 AAAATCGCCATGCAGCAGTT 59.395 45.000 0.00 0.00 0.00 3.16
269 270 1.462616 TAAAATCGCCATGCAGCAGT 58.537 45.000 0.00 0.00 0.00 4.40
270 271 2.223641 ACATAAAATCGCCATGCAGCAG 60.224 45.455 0.00 0.00 0.00 4.24
271 272 1.750206 ACATAAAATCGCCATGCAGCA 59.250 42.857 0.00 0.00 0.00 4.41
272 273 2.121786 CACATAAAATCGCCATGCAGC 58.878 47.619 0.00 0.00 0.00 5.25
273 274 3.313249 TCTCACATAAAATCGCCATGCAG 59.687 43.478 0.00 0.00 0.00 4.41
274 275 3.277715 TCTCACATAAAATCGCCATGCA 58.722 40.909 0.00 0.00 0.00 3.96
275 276 3.969117 TCTCACATAAAATCGCCATGC 57.031 42.857 0.00 0.00 0.00 4.06
276 277 6.267817 ACAAATCTCACATAAAATCGCCATG 58.732 36.000 0.00 0.00 0.00 3.66
277 278 6.455360 ACAAATCTCACATAAAATCGCCAT 57.545 33.333 0.00 0.00 0.00 4.40
278 279 5.895636 ACAAATCTCACATAAAATCGCCA 57.104 34.783 0.00 0.00 0.00 5.69
279 280 9.382244 GTATAACAAATCTCACATAAAATCGCC 57.618 33.333 0.00 0.00 0.00 5.54
280 281 9.929722 TGTATAACAAATCTCACATAAAATCGC 57.070 29.630 0.00 0.00 0.00 4.58
292 293 9.973246 CCGCACATAATATGTATAACAAATCTC 57.027 33.333 5.49 0.00 42.70 2.75
293 294 8.450964 GCCGCACATAATATGTATAACAAATCT 58.549 33.333 5.49 0.00 42.70 2.40
294 295 8.233868 TGCCGCACATAATATGTATAACAAATC 58.766 33.333 5.49 0.00 42.70 2.17
295 296 8.105097 TGCCGCACATAATATGTATAACAAAT 57.895 30.769 5.49 0.00 42.70 2.32
296 297 7.227711 ACTGCCGCACATAATATGTATAACAAA 59.772 33.333 5.49 0.00 42.70 2.83
297 298 6.708502 ACTGCCGCACATAATATGTATAACAA 59.291 34.615 5.49 0.00 42.70 2.83
298 299 6.227522 ACTGCCGCACATAATATGTATAACA 58.772 36.000 5.49 2.56 42.70 2.41
299 300 6.721571 ACTGCCGCACATAATATGTATAAC 57.278 37.500 5.49 0.00 42.70 1.89
300 301 9.093970 GATAACTGCCGCACATAATATGTATAA 57.906 33.333 5.49 0.00 42.70 0.98
301 302 8.474831 AGATAACTGCCGCACATAATATGTATA 58.525 33.333 5.49 0.00 42.70 1.47
302 303 7.331026 AGATAACTGCCGCACATAATATGTAT 58.669 34.615 5.49 0.00 42.70 2.29
303 304 6.697395 AGATAACTGCCGCACATAATATGTA 58.303 36.000 5.49 0.00 42.70 2.29
304 305 5.551233 AGATAACTGCCGCACATAATATGT 58.449 37.500 0.00 0.00 46.22 2.29
305 306 5.871524 AGAGATAACTGCCGCACATAATATG 59.128 40.000 0.00 0.00 0.00 1.78
306 307 6.042638 AGAGATAACTGCCGCACATAATAT 57.957 37.500 0.00 0.00 0.00 1.28
307 308 5.468540 AGAGATAACTGCCGCACATAATA 57.531 39.130 0.00 0.00 0.00 0.98
308 309 4.342862 AGAGATAACTGCCGCACATAAT 57.657 40.909 0.00 0.00 0.00 1.28
309 310 3.819564 AGAGATAACTGCCGCACATAA 57.180 42.857 0.00 0.00 0.00 1.90
310 311 3.819564 AAGAGATAACTGCCGCACATA 57.180 42.857 0.00 0.00 0.00 2.29
311 312 2.698855 AAGAGATAACTGCCGCACAT 57.301 45.000 0.00 0.00 0.00 3.21
312 313 2.346803 GAAAGAGATAACTGCCGCACA 58.653 47.619 0.00 0.00 0.00 4.57
313 314 1.324736 CGAAAGAGATAACTGCCGCAC 59.675 52.381 0.00 0.00 0.00 5.34
314 315 1.640428 CGAAAGAGATAACTGCCGCA 58.360 50.000 0.00 0.00 0.00 5.69
315 316 0.931005 CCGAAAGAGATAACTGCCGC 59.069 55.000 0.00 0.00 0.00 6.53
316 317 0.931005 GCCGAAAGAGATAACTGCCG 59.069 55.000 0.00 0.00 0.00 5.69
317 318 1.300481 GGCCGAAAGAGATAACTGCC 58.700 55.000 0.00 0.00 0.00 4.85
318 319 1.134371 AGGGCCGAAAGAGATAACTGC 60.134 52.381 0.00 0.00 0.00 4.40
319 320 2.483889 GGAGGGCCGAAAGAGATAACTG 60.484 54.545 0.00 0.00 0.00 3.16
320 321 1.763545 GGAGGGCCGAAAGAGATAACT 59.236 52.381 0.00 0.00 0.00 2.24
321 322 1.202663 GGGAGGGCCGAAAGAGATAAC 60.203 57.143 0.00 0.00 33.83 1.89
322 323 1.129058 GGGAGGGCCGAAAGAGATAA 58.871 55.000 0.00 0.00 33.83 1.75
323 324 0.264955 AGGGAGGGCCGAAAGAGATA 59.735 55.000 0.00 0.00 33.83 1.98
324 325 1.003573 AGGGAGGGCCGAAAGAGAT 59.996 57.895 0.00 0.00 33.83 2.75
325 326 1.686110 GAGGGAGGGCCGAAAGAGA 60.686 63.158 0.00 0.00 33.83 3.10
326 327 2.736826 GGAGGGAGGGCCGAAAGAG 61.737 68.421 0.00 0.00 33.83 2.85
327 328 2.687566 GGAGGGAGGGCCGAAAGA 60.688 66.667 0.00 0.00 33.83 2.52
328 329 3.798511 GGGAGGGAGGGCCGAAAG 61.799 72.222 0.00 0.00 33.83 2.62
345 346 4.256278 ATAGGGAGGAGGGCGGGG 62.256 72.222 0.00 0.00 0.00 5.73
346 347 2.925170 CATAGGGAGGAGGGCGGG 60.925 72.222 0.00 0.00 0.00 6.13
347 348 2.122813 ACATAGGGAGGAGGGCGG 60.123 66.667 0.00 0.00 0.00 6.13
348 349 0.112606 TAGACATAGGGAGGAGGGCG 59.887 60.000 0.00 0.00 0.00 6.13
349 350 2.400467 TTAGACATAGGGAGGAGGGC 57.600 55.000 0.00 0.00 0.00 5.19
350 351 5.012561 CAGAATTTAGACATAGGGAGGAGGG 59.987 48.000 0.00 0.00 0.00 4.30
351 352 5.012561 CCAGAATTTAGACATAGGGAGGAGG 59.987 48.000 0.00 0.00 0.00 4.30
352 353 5.512232 GCCAGAATTTAGACATAGGGAGGAG 60.512 48.000 0.00 0.00 0.00 3.69
353 354 4.348168 GCCAGAATTTAGACATAGGGAGGA 59.652 45.833 0.00 0.00 0.00 3.71
354 355 4.349342 AGCCAGAATTTAGACATAGGGAGG 59.651 45.833 0.00 0.00 0.00 4.30
355 356 5.306678 AGAGCCAGAATTTAGACATAGGGAG 59.693 44.000 0.00 0.00 0.00 4.30
356 357 5.070981 CAGAGCCAGAATTTAGACATAGGGA 59.929 44.000 0.00 0.00 0.00 4.20
357 358 5.163258 ACAGAGCCAGAATTTAGACATAGGG 60.163 44.000 0.00 0.00 0.00 3.53
358 359 5.923204 ACAGAGCCAGAATTTAGACATAGG 58.077 41.667 0.00 0.00 0.00 2.57
359 360 7.044181 TGAACAGAGCCAGAATTTAGACATAG 58.956 38.462 0.00 0.00 0.00 2.23
365 366 6.183360 CCTTCATGAACAGAGCCAGAATTTAG 60.183 42.308 3.38 0.00 0.00 1.85
385 386 5.473162 CACAAGATATTTGTGGTGACCTTCA 59.527 40.000 16.57 0.00 44.33 3.02
387 388 5.964958 CACAAGATATTTGTGGTGACCTT 57.035 39.130 16.57 0.00 44.33 3.50
434 436 8.021396 GCAGACGGAATTTAATTAGTTGAAACT 58.979 33.333 0.71 0.71 42.91 2.66
442 444 4.881850 ACCAGGCAGACGGAATTTAATTAG 59.118 41.667 0.00 0.00 0.00 1.73
458 460 8.588290 AGTTTGATAATATTTACAACCAGGCA 57.412 30.769 0.00 0.00 0.00 4.75
474 476 9.632807 CGAATGGGATTTAACAAAGTTTGATAA 57.367 29.630 22.23 17.03 0.00 1.75
486 488 7.010091 CAGGCATAAAAACGAATGGGATTTAAC 59.990 37.037 0.00 0.00 0.00 2.01
511 513 5.010112 TGTCCGACCAATTTAAAATGAAGCA 59.990 36.000 4.78 0.00 0.00 3.91
520 522 4.559704 GCACCAAATGTCCGACCAATTTAA 60.560 41.667 0.00 0.00 0.00 1.52
543 545 1.813513 GTCAGCCATCCGATAATGGG 58.186 55.000 11.74 0.00 45.40 4.00
575 577 2.819608 ACAAATATATGCGCCCATGGAC 59.180 45.455 15.22 0.00 32.85 4.02
580 582 2.289274 CGACAACAAATATATGCGCCCA 59.711 45.455 4.18 0.00 0.00 5.36
583 585 3.001838 TGGACGACAACAAATATATGCGC 59.998 43.478 0.00 0.00 0.00 6.09
584 586 4.787381 TGGACGACAACAAATATATGCG 57.213 40.909 0.00 0.00 0.00 4.73
586 588 6.483307 ACCAGATGGACGACAACAAATATATG 59.517 38.462 5.72 0.00 38.94 1.78
589 591 4.843728 ACCAGATGGACGACAACAAATAT 58.156 39.130 5.72 0.00 38.94 1.28
604 606 0.937304 CCAACGCGGATTACCAGATG 59.063 55.000 12.47 0.00 36.56 2.90
610 612 1.702491 GCACCTCCAACGCGGATTAC 61.702 60.000 12.47 0.00 45.19 1.89
628 630 1.374758 CCGTGAAGTCTGTGAGGGC 60.375 63.158 0.00 0.00 0.00 5.19
630 632 0.038159 GGACCGTGAAGTCTGTGAGG 60.038 60.000 0.00 0.00 36.95 3.86
747 752 2.358737 CGACTGGCCTGGGTGTTC 60.359 66.667 14.82 0.95 0.00 3.18
785 791 3.179830 GCCAGTGAACTGTGACGTATAG 58.820 50.000 9.49 0.00 42.27 1.31
787 793 1.668919 CGCCAGTGAACTGTGACGTAT 60.669 52.381 9.49 0.00 42.27 3.06
788 794 0.318360 CGCCAGTGAACTGTGACGTA 60.318 55.000 9.49 0.00 42.27 3.57
789 795 1.591594 CGCCAGTGAACTGTGACGT 60.592 57.895 9.49 0.00 42.27 4.34
790 796 1.591594 ACGCCAGTGAACTGTGACG 60.592 57.895 9.49 11.58 42.27 4.35
812 819 4.150980 CAGAGAACAAACATAAACCGCGTA 59.849 41.667 4.92 0.00 0.00 4.42
932 939 2.950638 TCGGGGAGGGGAGGAGAA 60.951 66.667 0.00 0.00 0.00 2.87
1002 1015 2.514267 GTCGGTTCTGTTGGACGAC 58.486 57.895 0.00 0.00 45.42 4.34
1003 1016 1.364901 GGTCGGTTCTGTTGGACGA 59.635 57.895 0.00 0.00 0.00 4.20
1004 1017 2.019951 CGGTCGGTTCTGTTGGACG 61.020 63.158 0.00 0.00 0.00 4.79
1009 1022 2.049433 CTCGCGGTCGGTTCTGTT 60.049 61.111 6.13 0.00 36.13 3.16
1014 1027 1.447314 GGATTTCTCGCGGTCGGTT 60.447 57.895 6.13 0.00 36.13 4.44
1018 1031 1.153549 AGCAGGATTTCTCGCGGTC 60.154 57.895 6.13 0.00 0.00 4.79
1436 1455 2.111999 CTCAAAGCTGACGGACCCCA 62.112 60.000 0.00 0.00 0.00 4.96
1441 1460 1.118965 TCCACCTCAAAGCTGACGGA 61.119 55.000 0.00 0.00 0.00 4.69
1446 1465 1.230635 CCACGTCCACCTCAAAGCTG 61.231 60.000 0.00 0.00 0.00 4.24
1643 1666 0.908198 AAGATGACTCCAGCCAGACC 59.092 55.000 0.00 0.00 0.00 3.85
1733 1756 8.554528 CAATCCTACAGAAATGATGATACACAC 58.445 37.037 0.00 0.00 0.00 3.82
1769 1792 7.717875 CCCCAAGAATGCAATCAATATTCAATT 59.282 33.333 4.25 0.00 34.18 2.32
1805 1828 1.594331 GTCGCCAGATAACATTCCCC 58.406 55.000 0.00 0.00 0.00 4.81
1807 1830 2.325583 TGGTCGCCAGATAACATTCC 57.674 50.000 0.00 0.00 0.00 3.01
1844 1867 1.864435 GCTATGAGTGGGTTCGCTACG 60.864 57.143 0.00 0.00 33.25 3.51
1852 1875 1.694169 CCTGGGGCTATGAGTGGGT 60.694 63.158 0.00 0.00 0.00 4.51
1853 1876 0.769776 ATCCTGGGGCTATGAGTGGG 60.770 60.000 0.00 0.00 0.00 4.61
1854 1877 0.689623 GATCCTGGGGCTATGAGTGG 59.310 60.000 0.00 0.00 0.00 4.00
1855 1878 1.427809 TGATCCTGGGGCTATGAGTG 58.572 55.000 0.00 0.00 0.00 3.51
1856 1879 2.196742 TTGATCCTGGGGCTATGAGT 57.803 50.000 0.00 0.00 0.00 3.41
1857 1880 2.374504 ACATTGATCCTGGGGCTATGAG 59.625 50.000 14.16 0.00 0.00 2.90
1858 1881 2.373169 GACATTGATCCTGGGGCTATGA 59.627 50.000 14.16 0.00 0.00 2.15
1859 1882 2.787994 GACATTGATCCTGGGGCTATG 58.212 52.381 0.00 2.11 0.00 2.23
1860 1883 1.349026 CGACATTGATCCTGGGGCTAT 59.651 52.381 0.00 0.00 0.00 2.97
1861 1884 0.758734 CGACATTGATCCTGGGGCTA 59.241 55.000 0.00 0.00 0.00 3.93
1862 1885 1.274703 ACGACATTGATCCTGGGGCT 61.275 55.000 0.00 0.00 0.00 5.19
1863 1886 0.394352 AACGACATTGATCCTGGGGC 60.394 55.000 0.00 0.00 0.00 5.80
1864 1887 2.128771 AAACGACATTGATCCTGGGG 57.871 50.000 0.00 0.00 0.00 4.96
2020 2056 7.924358 TGTTATAGCTCCCTACAGGATTTTA 57.076 36.000 0.00 0.00 46.33 1.52
2056 2092 5.350504 TTGATGGTGGTTGATGTTTTTGT 57.649 34.783 0.00 0.00 0.00 2.83
2110 2146 1.597663 CTTCTTGAAGGCGTCGTTGTT 59.402 47.619 2.63 0.00 0.00 2.83
2155 2191 2.184020 CTTCGTGGGTGGATCTGGCA 62.184 60.000 0.00 0.00 0.00 4.92
2248 2284 4.836125 AGCAATTGTGGTGTTCTTACAG 57.164 40.909 7.40 0.00 34.24 2.74
2263 2299 2.092914 GGACTGGCTGTACCTAGCAATT 60.093 50.000 7.43 0.00 45.46 2.32
2304 2340 0.815734 GGATTCGAGTTCCGGAGTGA 59.184 55.000 3.34 0.00 39.14 3.41
2305 2341 0.179108 GGGATTCGAGTTCCGGAGTG 60.179 60.000 3.34 0.00 39.14 3.51
2306 2342 0.613853 TGGGATTCGAGTTCCGGAGT 60.614 55.000 3.34 0.00 39.14 3.85
2307 2343 0.103208 CTGGGATTCGAGTTCCGGAG 59.897 60.000 8.41 4.41 39.14 4.63
2308 2344 0.613853 ACTGGGATTCGAGTTCCGGA 60.614 55.000 20.46 0.00 39.14 5.14
2309 2345 0.179108 GACTGGGATTCGAGTTCCGG 60.179 60.000 12.46 12.46 39.14 5.14
2310 2346 0.818296 AGACTGGGATTCGAGTTCCG 59.182 55.000 0.11 0.00 40.25 4.30
2311 2347 2.362717 CCTAGACTGGGATTCGAGTTCC 59.637 54.545 0.00 0.00 32.00 3.62
2312 2348 3.025262 ACCTAGACTGGGATTCGAGTTC 58.975 50.000 12.53 0.00 32.00 3.01
2313 2349 3.025262 GACCTAGACTGGGATTCGAGTT 58.975 50.000 12.53 0.00 32.00 3.01
2314 2350 2.025226 TGACCTAGACTGGGATTCGAGT 60.025 50.000 12.53 0.00 34.60 4.18
2315 2351 2.656002 TGACCTAGACTGGGATTCGAG 58.344 52.381 12.53 0.00 0.00 4.04
2316 2352 2.820728 TGACCTAGACTGGGATTCGA 57.179 50.000 12.53 0.00 0.00 3.71
2317 2353 3.522553 GTTTGACCTAGACTGGGATTCG 58.477 50.000 12.53 0.00 0.00 3.34
2318 2354 3.875125 GGTTTGACCTAGACTGGGATTC 58.125 50.000 12.53 0.00 34.73 2.52
2329 2365 7.688574 GGAGTGAAAACTCTTAGGTTTGACCTA 60.689 40.741 2.76 2.76 39.37 3.08
2330 2366 6.056236 GAGTGAAAACTCTTAGGTTTGACCT 58.944 40.000 4.84 4.84 39.37 3.85
2331 2367 5.238868 GGAGTGAAAACTCTTAGGTTTGACC 59.761 44.000 3.83 0.00 39.37 4.02
2332 2368 5.050295 CGGAGTGAAAACTCTTAGGTTTGAC 60.050 44.000 5.89 0.00 38.94 3.18
2333 2369 5.054477 CGGAGTGAAAACTCTTAGGTTTGA 58.946 41.667 5.89 0.00 34.81 2.69
2334 2370 4.213482 CCGGAGTGAAAACTCTTAGGTTTG 59.787 45.833 0.00 0.00 34.81 2.93
2335 2371 4.102054 TCCGGAGTGAAAACTCTTAGGTTT 59.898 41.667 0.00 0.00 37.93 3.27
2336 2372 3.644738 TCCGGAGTGAAAACTCTTAGGTT 59.355 43.478 0.00 0.00 36.97 3.50
2337 2373 3.236896 TCCGGAGTGAAAACTCTTAGGT 58.763 45.455 0.00 0.00 36.97 3.08
2338 2374 3.955650 TCCGGAGTGAAAACTCTTAGG 57.044 47.619 0.00 7.31 36.97 2.69
2339 2375 4.884247 AGTTCCGGAGTGAAAACTCTTAG 58.116 43.478 3.34 0.00 36.97 2.18
2340 2376 4.558095 CGAGTTCCGGAGTGAAAACTCTTA 60.558 45.833 22.86 0.00 43.39 2.10
2341 2377 3.729966 GAGTTCCGGAGTGAAAACTCTT 58.270 45.455 19.86 0.00 42.66 2.85
2342 2378 2.288273 CGAGTTCCGGAGTGAAAACTCT 60.288 50.000 22.86 6.18 43.39 3.24
2343 2379 2.059541 CGAGTTCCGGAGTGAAAACTC 58.940 52.381 17.99 17.99 42.57 3.01
2344 2380 1.684983 TCGAGTTCCGGAGTGAAAACT 59.315 47.619 3.34 3.65 39.14 2.66
2345 2381 2.144482 TCGAGTTCCGGAGTGAAAAC 57.856 50.000 3.34 0.00 39.14 2.43
2346 2382 2.894763 TTCGAGTTCCGGAGTGAAAA 57.105 45.000 3.34 0.00 39.14 2.29
2347 2383 2.353406 GGATTCGAGTTCCGGAGTGAAA 60.353 50.000 3.34 0.00 39.14 2.69
2348 2384 1.203994 GGATTCGAGTTCCGGAGTGAA 59.796 52.381 3.34 8.17 39.14 3.18
2416 2452 4.156739 CAGTAACTTCTTCATGGAAAGGGC 59.843 45.833 0.00 0.00 0.00 5.19
2525 2561 1.004440 GTGCTCCGGTCTGCTTTCT 60.004 57.895 0.00 0.00 0.00 2.52
2548 2584 4.578928 GTCAGTTACCTTGTTGATGTTGGT 59.421 41.667 0.00 0.00 35.05 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.