>input_sequence_74069
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----------------------------------------------------ATGTCGTCCAACAGAACCGACCGCGAGA
AATCCTGCTGCGGCAGCCTGTTCACCTTCCTCGTCGCTGCCGGCTTCGTCATCCTCATCTACTGGGCCATCTTCCAGCCG
CACCACATCCGCGCGACGGTCAGCTCCGCCACGCTCACCAACCTCACCGTGGCCCCCGACAACGCCACCGTCTCCTACCG
CCTCACCGTCGGGCTCGAGCTCTACAACCCCAGCCTCCGCGTCCCCATCTACTACGACGCCCTCGACGCGGAGCTCCGCG
CCA---GCGGCGGGGCCTCCCTCGGCGGCCCCGCTGCCCGCGTCGCCT---CGTCGCCGGCGGAGTTCCTGCAGCGCAGG
AAGAGCGCCGACACGGTCAGGCTGGAGTTCGACGGGAGCAGCGGCGTCGGCGTCCCCGACGACGTCGCCAGGGAGCTGGC
GAGGGAGGCGGGCGTGGGGTCCGTCAGCTTTGAGGTGGACGTGGATGCGCGGGTGCGCTACAGGTTCGCCAGCATCAAGA
TCCGCCAGAAGCCGAGGATTTGGTGCTGGCTCACGGTTCCGGTCAAGCCGGAGGGTGGCCTCCGTTTCGGCGGCGCTCTG
GCCTCCGGCGACCGCTGTAGCGTTAAGTACTGA-----------------------------------------------
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>chr6B_1_TraesCS6B01G151500
TGCCCCGAAGGACGTCGCGCAACCACCAAATGAGGAGGCAGCCATAAACCAAAGACGGAGGCAGCCCCAGAGGAAAAAAG
GCATGAGTTGGGTGGACGCCGCCACACCGACCAACCTCACCACCACTATGAAGATCTTGCGAGCCAAACATGGCCCAAAA
GAAGACCGCAACTCCTCGCTCTGTTGTCCACGGTGGACACATCAATTATCACACCCGTTGATTCTCGCAAAACATATCTC
TCTTGTTACAATAAATTATTATTTGTGCAACTGCTGCATGGCGATTTTATGTGAGATTTGTTATACATATTATGTGCGGC
AGTTATCTCTTTCGGCCCTCCCTCCCCCCGCCCTCCTCCCTATGTCTAAATTCTGGCTCTGTTCATGAAGGTCACCA-CA
AATATCTTGTGTAGTTTAGTTACAAGGTTAAATTTAGTTTCAACTAATTAAATTCCGTCTGCCTGGTTGTAAATATTATC
AAACTTTGTTAAATCCCATTCGTTTTTATGCCTGCTTCATTTTAAATTGGTCGGACATTTGGTGCCCATTATCGGATGGC
TGACGCCTAGCCCACTGTCCATGGGCGCATATATTTGTTGTCGTCCATCTGGTAATCCGCGTTGGAGGTGCCCTCACAGA
CTTCACGGTCCTTGCATCGCACTTCACTGGAACATTCCTGGTGGTAC---ATCGTCATGAGACATCGCCCGGCGCGTCGT
GAACAACGCTCAAGGCATAGACGACGACTTGGAACACCC-AGGCCAGTCGCCAAGTCTTCTCGGAAAAAACTATAC-GTC
ACAGTTCACTGGCGTGTCTACGCGGTTTATGTTTGTTCTCTGATGCTTCCGACAACACACGGCCCAGAGGACAAAGAGGC
CTCGAGGCTCGCCACAGCTCGCAGCCTCGCACACGCACCCACCCGCGCGCCTCTGCTCTTCTCCTCCCCTCCCCGACTCC
CCGTTGACCCACCAACGAC-----CTCTTCCTCCGCCAG-CGCCCGCCCGCCATGTCGTCCAACAGAACCGACCGCGAGA
AATCCTGCTGCGGCAGCCTGTTCACCTTCCTCGTCGCTGCCGGCTTCGTCATCCTCATCTACTGGGCCATCTTCCAGCCG
CACCACATCCGCGCGACGGTCAGCTCCGCCACGCTCACCAACCTCACCGTGGCCCCCGACAACGCCACCGTCTCCTACCG
CCTCACCGTCGGGCTCGAGCTCTACAACCCCAGCCTCCGCGTCCCCATCTACTACGACGCCCTCGACGCGGAGCTCCGCG
CCA---GCGGCGGGGCCTCCCTCGGCGGCCCCGCTGCCCGCGTCGCCT---CGTCGCCGGCGGAGTTCCTGCAGCGCAGG
AAGAGCGCCGACACGGTCAGGCTGGAGTTCGACGGGAGCAGCGGCGTCGGCGTCCCCGACGACGTCGCCAGGGAGCTGGC
GAGGGAGGCGGGCGTGGGGTCCGTCAGCTTTGAGGTGGACGTGGATGCGCGGGTGCGCTACAGGTTCGCCAGCATCAAGA
TCCGCCAGAAGCCGAGGATTTGGTGCTGGCTCACGGTTCCGGTCAAGCCGGAGGGTGGCCTCCGTTTCGGCGGCGCTCTG
GCCTCCGGCGACCGCTGTAGCGTTAAGTACTGATGAAGTTTCTTGGG----TCTCTGACTCTGGCGGTCTGGCTGGAGTC
ATCTTGTTTGGAGATCCCTCGGTGTCCCGGTTTGATGTTGGTTTCATTTTTGCAAATATTCGTATTGTTCGTGTGGTGTG
TATCATCATTTCTGTAGGATTGTTTGACTATAATTGAATATTGATTGCATTCTTGGGGATTAATTCAGGGGAATGTTATC
TGGCGACCATTCCCCATGAGGAAATCCGTAGCGAACCCACTCATAGCCCCAGGATCAATGTCGTTTTTTCAATAAAGAAT
GTATTTTATTAACTCATAATGTTGCATCAAGAGAATACAAATCATCATGAACTCACATCCGGTCTCTGCATAACTAGGAT
GCACACAGC--------AC--ACACACAAAAAAAGGAAAA---AAATGTGAACTCTAAAATCCTGTAGGGAGCTATAACA
TGCAGCAATAAACAAAAACATCAACCACCATCAATGGCAACACCCGGACATTGGGAAAGTGCTTCAACAACGACGCCTTC
AAGAAGGGAACGGCACACGAGCGCCGCCATTGCCAGATCCACCCACGAAGGGTTAAATCTTGGGTTTTCACCCTGAAGAG
GAAGTCCGAGCAAGCTCCAAACAATGCCTTCAACAAGGGAATGCTGTAAGAACACCACAATTGCTAGGTACAGCCAGTCC
AGGTCAAACCTAAGAGTTTTCACTCCGGAACTCGAATCCCAGTCTAGGTCAAACCTAAGAGTTTTCACTCCGGAACTCGA
ATCCCAGTGCTTAAGAGCACCACCAAACCAATGTCACAATGTACTGTCGCCGCCCTTTCCATGAAGAAGTTACTGCTGCA
AGTCAGATTGTCACTCCTCAACAGCCATATATGCTCACAACCCTGACGTGGAGAAACGCAACCGGGCATAACACATATAC
AGAAAGCAGACCGGAGCACAACCACCAACATCAACAAGGTAACTGACGCCACCAAGAACCCATGAGAGGCCATCCGGCAG
CCCAAGTCTT-
>chr6D_361
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----------------------------------------TATGTTTAAATTCTGGCTCTGTTCACGGAGGTCACCATCA
AGTACCTCGTGTAGTTTAGTTGTAATGTCAAATTTGGTTTCAAATAATTAAATTCCGTCCGTCTGGTTGTGAATA-TATC
AAACTTTATTAAATCCCATTCATTTTTATGCCCGCTTCATTATAAATTGGTCGTATATTTGGTGTTCATGGTTGGATGGC
TGACGCCTAGCCCACTATCCACGGATGGATCTATTTGTTGTCGTCTATCTGCTAA-CCGCGTTGGAGGTTCTCTCACAGA
CTTCACGGTTCTTGCATCGCACTTCACTGGAACATTCCTGGTGGTAC---ATCGTCATGCGACATCGCCCGGCGCGTCGC
GTGCAACGCTCAAGGCATAGACGACGACTTGAACA--CC-AGGTCAGTCGCCAAGTCATCTCGAAAAAAAGTTACATGTC
ACAGTTCACTGGCGTGTCCACGCGGTTTATGTTTGTTCTCTGCTGCTTCCGACAACACACGGCCCAGAGGACAAAGAGGC
CTCGAGGCTCGCCACAGC-------------CACGCACCCACCCGCGCGCCTCTGCTCAGCTCCTCCCCTCCCCGACTCC
CCGTTGACCCACCAACGAACCCTGCTTCTCCTCCGCCGCCGGCCCGCC----AT---GTCCGATAGCGCCCACCGCGAGA
AATCCTGCTGCGGCAGCCTGTTCACCTTCCTCGTCGCCGCCGGCTTCGTCATCCTCATCTACTGGGCCATCTTCCAGCCG
CACCACATCCGCGCGACGGTCAGCTCCGCCACGCTCGCCAACCTCACAGTGGCCCCCGACAACGCCACCGTCTCCTACCG
CCTCACCGTCGGGCTCGAGCTCTACAACCCCAGCCTCCGCGTGCCCATCTACTACGACGCCCTCGACGCCGAGCTCCGCG
CCGGCGGCGGCGGGGCCTCCCTCCGCGGCCCCGCTGCCCGCGTCGCCT---CCTCGCCGGCGGAGTTCCTGCAGCGCAGG
AAGAGCGCCGACACGGTGAGGCTGGAGTTCGACGGGAGCAGCGGCGTCGGCGTCCCCGGCGACGTCGCCGGGGAGCTGGC
GAGGGAGGCGGCCGCCGGGGTCGTGAGCTTTGAGGTGGACGTGGATGCGCGGGTGCGCTACAGGTTCGCCAGCATCAAGA
TCCGCCAGAAGCCGAGGATTTGGTGCTGGCTGACGGTTCTGGTCAAGCCGGAGGGTGGCGTCGGTTTCGGCGGCGCTCTG
GCCTCCGGCGACCGCTGTAGCGTCAAGTACTGATGAAGTTTCTTGGGCGGTTCTCTGACTCTGGCAGTCTGGCTGGAGTC
ATCTTGTTTGGAGATCCCTCGGTGTCCCGGTTTGATGTTGGTTTCATTTTTGCAAATATTCGTATTGTTCGTGTGATGTG
TATCAACATTTCTGTAGGATTGTTTGACTATCATTGAATATTGATTGCATTCTTGGGGGTAAATTCATGAGAATG-TATC
TGGCGACCATTCCCCATGAGGAAATCAGTAGCGA----------------------------------------------
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>chr6A_618
GCGGTGGAGTTGG-------------------------------------------------------------------
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------------------------------------------------------------------------CTCACAGA
CTTCACGGTCCTTGCATCGCACTTTACTGGAACATTCCTGGCGGTACTGAATCGTCATGGGACATCACCCGGCGCGTCGT
GTGCAACGCTCAAGGCATAGACGACGACTTGAACA--CCCAGGCCAGTCG-CAAGTCTTCTCGAAAAAAAGTTACGTAC-
----------------TCGACGCGGTTTATGTTTGTTCTCTGATGCTTCCGACGACGCACGGCCCAGAGGACAAAGAGGC
CTCGAGGCTCGCCACAG-------CCTCGCACACGCACCCACCCGCGCGCCTCTGCTCCTCCC-------------CTCC
CCGTTGACCCACCAACGAC-----CTCCTCCTCCGCCGCCCGCCCGCCCGCCAT---GTCCGACAGCACCCACCGCGAGA
GATCCTGCTGCGGCAGCCTGTTCACCTTCCTCGTCGCCGCCGGCTTCGTCATCCTCATCTACTGGGCCATCTTCCAGCCG
CACCACATCCGCGCGACGGTCAGCTCCGCCACGCTCGCCAACCTCACCGTGGCCCGCGACAACGCCACCGTCTCCTACCG
CCTCACCGTCGGGCTCGAGCTCTACAACCCCAGCCTCCGCGTGCCCATCTACTACGACGCGCTCGACGCCGAGCTCCGCG
CCGGCGGCGGCGGCGCCCCCCTCGGCGGCCCCGCTGCCCGCGTCGCCT---CCTCCCCGGCGGAGTTCCTGCAGCGCAGG
AAGAGCGCCGACACGGTCAGGCTGGAGTTCGACGGGAGCGGCGGCGTCGGCGTCCCCGGCGACGTCGCCGGGGAGCTGGC
GAGGGGGGCGGGCGCGGGGGCCGTGAGCTTTGAGGTGGACGTGGATGCGCGGGTGCGCTACAGGTTCGCCAGCATCAAGA
TCCGCCAGAAGCCGAGGATTTGGTGCTGGCTCACGGTTCCGGTCAAGCCGGAGGGTGGCGTCGGCGTCGGCGGCGCTCTG
GCCTCCGGCGAGCGTTGTAGCGTTAAGTACTGATGAAGCTTCTTGGGCAGTTCTCTGC------CAGTCTGGCTGGAGCC
ATCTTGTTTGGAGATCCCACGGTGTGCCGGTTTGATGTCGATTTCATTTTTGCAAATATTCATATTGTTTGTGTGATGTG
T------ATTTCTGTAGGATTGTTTGCCTATCATTGAATATTGGTTGCATTCTTGGGGATTAATTCA-------------
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>chr5A_1077
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------------------------------------------------TCATCCTCATCTACTGGGCCATCTTCCAGCCG
CACCAAATCCGCGCCACCGTCGGCTCCGCCACGCTCACCGGCCTCACCGTCACCAATGCCTCCGT---CGTATCCTACCG
CCTCGCCGTCACCCTCTACATATACAACCCCAGCCTCCGCGTCGGCATCTACTACGACACGCTGGACGCCGAGCTCAGCT
A------CCGCGGCGCATCGCTCGGCGGCCCCGGCGCTGGCGCTTCCACGGCGTCCCCGGCCGAGTTCTACCAGCGGAGG
AAGAGCTGGGAGACGGTGAAGGTGGAGTTCGACGGGAGCAGTGGCGGCATCCTCCCCGGCGACGTTGCTGCGGAGCTGGA
GAAGGAGATGGGTCGGGGGACGGTGAGCTTGGAGGTCACCGTGGACGCGCGGGTGAGGTACAGGTTCAACACCATCAAGA
TTCGCCAGAAGCCCAATTTGTGGTGCTCGCTCACCATACCGGTTAAGCCGGATCAGGGCCGCGGCGTCGGCGGCGTTCTT
ACCTCCGGTGACCGCTGTAGCGTCAAGTATTGAT----------------------------------------------
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>chr2B_1882
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---------------------------------------------------------------TTTTTTCGATAAAGGAT
GTATTTTATTAACTCATAATGTTGCATCAAGAGAATACAAATCATCATGAACTCACATCCGGCCTCTGCATAACTAGGAT
GCACACAGCCAACACTAACGCACACACACAAAAAAGAAAAAGAAAATGTGAACTCCAAAATCCTGTAGGGAGCTATAACA
TGCAGCAATAAGCAAAACCATCAACCACCATCAATGGCAACACCCGGACATTGGGAAAGTGCTTCGACAACGACGCCTTC
AAGAAGGGAAC-----ACGAGCGCTGCCATCGCCAGATCCACCCACGAAGGGTTAAATCTTGGGTTTTCACCCTGAAGAG
GAAGTCCGAGCAAGCTCCAACCAATGCCTTCAACAAGGGAATGATGTAAGAACACCACCATTGCTAGGTACAGCCAGTCC
AGGTCAAACCTAAGAGTTT---------------------------------------------TCACTCCGGAACTCGA
ATCCCTGTGCTTAAGAGCACCACCAAACCAATGTCACAATGTACTGTCGCCCCCCTTTCCATGAAGAAGTTACTGCTGCA
AGTCAGATTGTCACTCCTCAACAGCCATATATGCTCACAACCCTGACGTGGAGAAACGCAACCGGGCATAACACATATAC
GGAAAGCAGACCGGAGCACAACCGCAAACATCAACAAGGTAACTGACGCCACCAAGAACCCATGAGAGGCCACCCGGCAG
CCCAAGTCTT-
>chr3A_1882
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---------------------------------------------------------------TTTTTTTAATAAAGGAT
GTATTTTATTAACTCATAATATTGCATCAAGAGAATACAAATTATTATGAACTCACATCCGGCCTCTGCATAACTAAAAT
GCACACAATCAACACTAAC--ACACACATAAAAAGGAAAA---AAATGCAAACTCCAAAATGT------GAGCTATAACA
TGCAGTAATAATCAACATCATCAACCACCATCGATGACAACATCCGGACATTGGAAAAGTGCTTCGACAATGACGCCTTC
AAAAAGGGAACGACACACGAGTGCCGCCATCGCCAGATCCACCC---AAGGGTTAGATTTTGGGTTTTCACCCTGAAGAG
GAAGTCCAAGCAAGCTCCAAACTATACCTTCAACAAGGGAATGATGTAAGAACACCACCATTGCTAGGTACAGCCAGTCC
AGGTCAAACCTAAGAGTTT---------------------------------------------TCACTCCGGAACTCGA
ATCCATGTGCTTAAGAGCACCACCAAACCAATGTCACACTATACTATCGCACCCCTTTCAATGAAGAAGTTACTGCTGCA
AGTCAGATTGTCACTCCTCAACAGTCATATATGCTCACAACCCTGACGTGGACAAACGCAACCGTGCATACCACATATGC
GGGAAGCAGACCGGAGCACAACG-CCAGCATCAACAAGGTAACTGACGCCACCAAGAACCCATGAGAGGTCATCCGGCAG
CCCCAAGTCTT
>SNPs
SSSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-------------------S-S------------
-S--S--S-------------SS--S--S------S-------S---------------S-S--------S----S----
-------S-------------S----------S--------S-----------S-S--------SS---SS-S-------
----------------S----S--SS-S--S--------------S-----S---S-------------S-S--------
-----------------------------------------------------------S--------------------
-SS----------------------------S-SSSS--------------------------S------S-SSSS----
------------------S-------------------------------------------------------------
------------------SSSSSS----------------------------------S---------------------
---------------------------S---------SS---------------SSS----S----S---S---------
-------------------------------------S------------------------------------------
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---------------------------------------------------------------------S----------
--S-----------------------------------------------------------------------------
----------------------------------------------------------S----------S----------
--------------S----S----S-------------------------------------------------------
--------------------------------------------------------------S-----------------
-----------------------------------------------------------------S--------------
---------------------------------------------------------------------------S----
-----S-------------------------S-----------------------------------S-S-----S----
--------------------------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S--
--------------------------------------------------------------S-----------------
----------------------------S--------------------------S------------------------
-----------S-----S-----------------------------------------------S--------------
------------S-----------------S-------------------------------------------------
-------------------------------------------S--------------S---------------------
-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
-----S---------------------------------------------S----------------------------
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S----------------------S--------------------------------------------------------
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>forward_178
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------------------------------------------------------------------------------AA
GAAGACCGCAACTCCTCG--------------------------------------------------------------
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>reverse_1886
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---------------------------------------------GCCCCAGGATCAATGTCGTT---------------
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