Multiple sequence alignment - TraesCS6B01G138000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G138000 chr6B 100.000 2537 0 0 1 2537 135484048 135486584 0.000000e+00 4686.0
1 TraesCS6B01G138000 chr6D 94.163 1165 52 8 457 1618 61599665 61600816 0.000000e+00 1760.0
2 TraesCS6B01G138000 chr6D 92.401 329 21 2 2210 2537 61728361 61728686 1.370000e-127 466.0
3 TraesCS6B01G138000 chr6D 82.251 462 71 10 3 456 406639792 406640250 3.060000e-104 388.0
4 TraesCS6B01G138000 chr6D 84.896 384 53 5 77 457 147646867 147646486 1.420000e-102 383.0
5 TraesCS6B01G138000 chr6A 91.499 1294 72 26 457 1718 78984338 78985625 0.000000e+00 1746.0
6 TraesCS6B01G138000 chr6A 92.386 788 45 9 1760 2537 78985612 78986394 0.000000e+00 1109.0
7 TraesCS6B01G138000 chr3D 82.166 471 70 9 1 464 21601349 21601812 2.370000e-105 392.0
8 TraesCS6B01G138000 chr3D 84.399 391 54 7 77 464 591714824 591715210 6.630000e-101 377.0
9 TraesCS6B01G138000 chr5D 82.073 463 75 6 1 457 390366355 390366815 3.060000e-104 388.0
10 TraesCS6B01G138000 chr2D 85.052 388 51 7 77 461 160320021 160319638 3.060000e-104 388.0
11 TraesCS6B01G138000 chr2D 84.935 385 50 8 77 457 345277059 345277439 1.420000e-102 383.0
12 TraesCS6B01G138000 chr2D 84.675 385 52 7 77 457 55411968 55412349 6.630000e-101 377.0
13 TraesCS6B01G138000 chr7D 85.117 383 52 5 77 457 505611701 505612080 1.100000e-103 387.0
14 TraesCS6B01G138000 chr3B 100.000 31 0 0 1767 1797 804987558 804987588 9.800000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G138000 chr6B 135484048 135486584 2536 False 4686.0 4686 100.0000 1 2537 1 chr6B.!!$F1 2536
1 TraesCS6B01G138000 chr6D 61599665 61600816 1151 False 1760.0 1760 94.1630 457 1618 1 chr6D.!!$F1 1161
2 TraesCS6B01G138000 chr6A 78984338 78986394 2056 False 1427.5 1746 91.9425 457 2537 2 chr6A.!!$F1 2080

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
399 400 0.028505 CATGCTATGCGCCACTTGTC 59.971 55.0 4.18 0.0 38.05 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2249 2290 0.036732 TTCCGCACATGGAAGCTTCT 59.963 50.0 25.05 4.28 43.01 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.935630 GGCACGGTTTTCCTTTCG 57.064 55.556 0.00 0.00 37.95 3.46
18 19 1.371267 GGCACGGTTTTCCTTTCGC 60.371 57.895 0.00 0.00 37.95 4.70
19 20 1.724581 GCACGGTTTTCCTTTCGCG 60.725 57.895 0.00 0.00 37.95 5.87
20 21 1.935925 CACGGTTTTCCTTTCGCGA 59.064 52.632 3.71 3.71 37.95 5.87
21 22 0.110823 CACGGTTTTCCTTTCGCGAG 60.111 55.000 9.59 0.00 37.95 5.03
22 23 0.249573 ACGGTTTTCCTTTCGCGAGA 60.250 50.000 9.59 3.35 37.95 4.04
23 24 0.438830 CGGTTTTCCTTTCGCGAGAG 59.561 55.000 19.09 19.09 38.71 3.20
24 25 0.796927 GGTTTTCCTTTCGCGAGAGG 59.203 55.000 33.75 33.75 38.11 3.69
25 26 1.607251 GGTTTTCCTTTCGCGAGAGGA 60.607 52.381 36.77 36.77 40.22 3.71
27 28 3.509388 TTCCTTTCGCGAGAGGAAC 57.491 52.632 41.55 0.00 44.83 3.62
28 29 0.388134 TTCCTTTCGCGAGAGGAACG 60.388 55.000 41.55 21.45 44.83 3.95
29 30 1.211969 CCTTTCGCGAGAGGAACGA 59.788 57.895 35.58 4.05 43.69 3.85
30 31 1.071567 CCTTTCGCGAGAGGAACGAC 61.072 60.000 35.58 0.00 43.69 4.34
31 32 1.071567 CTTTCGCGAGAGGAACGACC 61.072 60.000 18.35 0.00 43.69 4.79
32 33 1.798234 TTTCGCGAGAGGAACGACCA 61.798 55.000 9.59 0.00 43.69 4.02
33 34 1.592400 TTCGCGAGAGGAACGACCAT 61.592 55.000 9.59 0.00 43.69 3.55
34 35 1.874019 CGCGAGAGGAACGACCATG 60.874 63.158 0.00 0.00 42.04 3.66
35 36 2.167861 GCGAGAGGAACGACCATGC 61.168 63.158 0.00 0.00 42.04 4.06
36 37 1.519455 CGAGAGGAACGACCATGCC 60.519 63.158 0.00 0.00 42.04 4.40
37 38 1.901085 GAGAGGAACGACCATGCCT 59.099 57.895 0.00 0.00 42.04 4.75
38 39 0.179097 GAGAGGAACGACCATGCCTC 60.179 60.000 6.68 6.68 45.70 4.70
39 40 1.901085 GAGGAACGACCATGCCTCT 59.099 57.895 7.37 0.00 42.81 3.69
40 41 0.250513 GAGGAACGACCATGCCTCTT 59.749 55.000 7.37 0.00 42.81 2.85
41 42 0.036010 AGGAACGACCATGCCTCTTG 60.036 55.000 0.00 0.00 42.04 3.02
42 43 0.036388 GGAACGACCATGCCTCTTGA 60.036 55.000 0.00 0.00 38.79 3.02
43 44 1.610624 GGAACGACCATGCCTCTTGAA 60.611 52.381 0.00 0.00 38.79 2.69
44 45 2.151202 GAACGACCATGCCTCTTGAAA 58.849 47.619 0.00 0.00 0.00 2.69
45 46 2.270352 ACGACCATGCCTCTTGAAAA 57.730 45.000 0.00 0.00 0.00 2.29
46 47 1.880027 ACGACCATGCCTCTTGAAAAC 59.120 47.619 0.00 0.00 0.00 2.43
47 48 1.135972 CGACCATGCCTCTTGAAAACG 60.136 52.381 0.00 0.00 0.00 3.60
48 49 2.151202 GACCATGCCTCTTGAAAACGA 58.849 47.619 0.00 0.00 0.00 3.85
49 50 2.552315 GACCATGCCTCTTGAAAACGAA 59.448 45.455 0.00 0.00 0.00 3.85
50 51 2.955660 ACCATGCCTCTTGAAAACGAAA 59.044 40.909 0.00 0.00 0.00 3.46
51 52 3.383185 ACCATGCCTCTTGAAAACGAAAA 59.617 39.130 0.00 0.00 0.00 2.29
52 53 4.142049 ACCATGCCTCTTGAAAACGAAAAA 60.142 37.500 0.00 0.00 0.00 1.94
97 98 4.314740 TTCCATGAAAGGAACGGTTTTG 57.685 40.909 0.00 0.00 42.56 2.44
98 99 2.035321 TCCATGAAAGGAACGGTTTTGC 59.965 45.455 0.00 0.00 33.93 3.68
99 100 2.035832 CCATGAAAGGAACGGTTTTGCT 59.964 45.455 0.00 0.00 0.00 3.91
100 101 3.492482 CCATGAAAGGAACGGTTTTGCTT 60.492 43.478 0.00 0.00 0.00 3.91
101 102 3.430333 TGAAAGGAACGGTTTTGCTTC 57.570 42.857 0.00 0.00 29.68 3.86
102 103 2.100087 TGAAAGGAACGGTTTTGCTTCC 59.900 45.455 0.00 0.00 34.69 3.46
107 108 2.173382 CGGTTTTGCTTCCGCGAG 59.827 61.111 8.23 0.00 40.28 5.03
108 109 2.314647 CGGTTTTGCTTCCGCGAGA 61.315 57.895 8.23 0.00 40.28 4.04
109 110 1.497722 GGTTTTGCTTCCGCGAGAG 59.502 57.895 8.23 5.93 39.65 3.20
110 111 1.497722 GTTTTGCTTCCGCGAGAGG 59.502 57.895 8.23 4.88 39.65 3.69
114 115 4.443266 GCTTCCGCGAGAGGCACT 62.443 66.667 20.89 0.00 46.54 4.40
115 116 2.507992 CTTCCGCGAGAGGCACTG 60.508 66.667 8.23 0.00 41.55 3.66
116 117 3.288308 CTTCCGCGAGAGGCACTGT 62.288 63.158 8.23 0.00 41.55 3.55
117 118 2.771763 CTTCCGCGAGAGGCACTGTT 62.772 60.000 8.23 0.00 41.55 3.16
118 119 3.114616 CCGCGAGAGGCACTGTTG 61.115 66.667 8.23 0.00 41.55 3.33
119 120 2.356313 CGCGAGAGGCACTGTTGT 60.356 61.111 0.00 0.00 41.55 3.32
120 121 2.661566 CGCGAGAGGCACTGTTGTG 61.662 63.158 0.00 0.00 41.55 3.33
129 130 3.532138 CACTGTTGTGCTTTCGTGG 57.468 52.632 0.00 0.00 37.38 4.94
130 131 0.029300 CACTGTTGTGCTTTCGTGGG 59.971 55.000 0.00 0.00 37.38 4.61
131 132 0.107410 ACTGTTGTGCTTTCGTGGGA 60.107 50.000 0.00 0.00 0.00 4.37
132 133 0.588252 CTGTTGTGCTTTCGTGGGAG 59.412 55.000 0.00 0.00 0.00 4.30
133 134 0.817634 TGTTGTGCTTTCGTGGGAGG 60.818 55.000 0.00 0.00 0.00 4.30
134 135 1.896660 TTGTGCTTTCGTGGGAGGC 60.897 57.895 0.00 0.00 0.00 4.70
135 136 2.281484 GTGCTTTCGTGGGAGGCA 60.281 61.111 0.00 0.00 32.85 4.75
136 137 1.675641 GTGCTTTCGTGGGAGGCAT 60.676 57.895 0.00 0.00 35.99 4.40
137 138 1.675310 TGCTTTCGTGGGAGGCATG 60.675 57.895 0.00 0.00 31.22 4.06
138 139 2.409870 GCTTTCGTGGGAGGCATGG 61.410 63.158 0.00 0.00 0.00 3.66
139 140 2.361104 TTTCGTGGGAGGCATGGC 60.361 61.111 12.14 12.14 0.00 4.40
150 151 3.064324 GCATGGCCGTGGCTCTTT 61.064 61.111 26.22 0.00 41.60 2.52
151 152 3.056313 GCATGGCCGTGGCTCTTTC 62.056 63.158 26.22 3.88 41.60 2.62
152 153 2.436646 ATGGCCGTGGCTCTTTCG 60.437 61.111 11.25 0.00 41.60 3.46
153 154 3.976701 ATGGCCGTGGCTCTTTCGG 62.977 63.158 11.25 0.00 45.94 4.30
154 155 4.388499 GGCCGTGGCTCTTTCGGA 62.388 66.667 11.25 0.00 46.05 4.55
155 156 2.358247 GCCGTGGCTCTTTCGGAA 60.358 61.111 2.98 0.00 46.05 4.30
156 157 1.964373 GCCGTGGCTCTTTCGGAAA 60.964 57.895 2.98 2.78 46.05 3.13
157 158 1.912371 GCCGTGGCTCTTTCGGAAAG 61.912 60.000 21.64 21.64 46.05 2.62
158 159 1.298859 CCGTGGCTCTTTCGGAAAGG 61.299 60.000 25.66 18.30 46.05 3.11
159 160 0.320421 CGTGGCTCTTTCGGAAAGGA 60.320 55.000 25.66 14.00 39.01 3.36
160 161 1.876416 CGTGGCTCTTTCGGAAAGGAA 60.876 52.381 25.66 10.39 39.01 3.36
161 162 2.227194 GTGGCTCTTTCGGAAAGGAAA 58.773 47.619 25.66 9.75 39.01 3.13
162 163 2.621526 GTGGCTCTTTCGGAAAGGAAAA 59.378 45.455 25.66 9.44 39.01 2.29
163 164 3.067601 GTGGCTCTTTCGGAAAGGAAAAA 59.932 43.478 25.66 9.11 39.01 1.94
182 183 4.766404 AAAAACTATGCTCTCGGTTTGG 57.234 40.909 0.00 0.00 33.09 3.28
183 184 3.418684 AAACTATGCTCTCGGTTTGGT 57.581 42.857 0.00 0.00 31.82 3.67
184 185 3.418684 AACTATGCTCTCGGTTTGGTT 57.581 42.857 0.00 0.00 0.00 3.67
185 186 3.418684 ACTATGCTCTCGGTTTGGTTT 57.581 42.857 0.00 0.00 0.00 3.27
186 187 3.751518 ACTATGCTCTCGGTTTGGTTTT 58.248 40.909 0.00 0.00 0.00 2.43
187 188 4.142038 ACTATGCTCTCGGTTTGGTTTTT 58.858 39.130 0.00 0.00 0.00 1.94
239 240 8.853077 AGTTCATCAAACTTATCAACATGAGA 57.147 30.769 0.00 0.00 46.26 3.27
240 241 9.458727 AGTTCATCAAACTTATCAACATGAGAT 57.541 29.630 0.00 5.16 46.26 2.75
241 242 9.713740 GTTCATCAAACTTATCAACATGAGATC 57.286 33.333 0.00 0.00 34.85 2.75
242 243 9.676861 TTCATCAAACTTATCAACATGAGATCT 57.323 29.630 0.00 0.00 0.00 2.75
262 263 5.950965 TCTAATTTTGAAGATCTCGACGC 57.049 39.130 0.00 0.00 0.00 5.19
263 264 5.407502 TCTAATTTTGAAGATCTCGACGCA 58.592 37.500 0.00 0.00 0.00 5.24
264 265 5.867174 TCTAATTTTGAAGATCTCGACGCAA 59.133 36.000 0.00 0.00 0.00 4.85
266 267 3.297830 TTTGAAGATCTCGACGCAAGA 57.702 42.857 0.00 0.00 43.62 3.02
267 268 3.297830 TTGAAGATCTCGACGCAAGAA 57.702 42.857 0.00 0.00 43.62 2.52
268 269 3.297830 TGAAGATCTCGACGCAAGAAA 57.702 42.857 0.00 0.00 43.62 2.52
269 270 3.849911 TGAAGATCTCGACGCAAGAAAT 58.150 40.909 0.00 0.00 43.62 2.17
270 271 3.859961 TGAAGATCTCGACGCAAGAAATC 59.140 43.478 0.00 0.00 43.62 2.17
271 272 2.815478 AGATCTCGACGCAAGAAATCC 58.185 47.619 0.00 0.00 43.62 3.01
272 273 2.166459 AGATCTCGACGCAAGAAATCCA 59.834 45.455 0.00 0.00 43.62 3.41
273 274 2.448926 TCTCGACGCAAGAAATCCAA 57.551 45.000 0.00 0.00 43.62 3.53
274 275 2.066262 TCTCGACGCAAGAAATCCAAC 58.934 47.619 0.00 0.00 43.62 3.77
275 276 1.798223 CTCGACGCAAGAAATCCAACA 59.202 47.619 0.00 0.00 43.62 3.33
276 277 1.798223 TCGACGCAAGAAATCCAACAG 59.202 47.619 0.00 0.00 43.62 3.16
277 278 1.531149 CGACGCAAGAAATCCAACAGT 59.469 47.619 0.00 0.00 43.62 3.55
278 279 2.662791 CGACGCAAGAAATCCAACAGTG 60.663 50.000 0.00 0.00 43.62 3.66
279 280 2.548057 GACGCAAGAAATCCAACAGTGA 59.452 45.455 0.00 0.00 43.62 3.41
280 281 2.948979 ACGCAAGAAATCCAACAGTGAA 59.051 40.909 0.00 0.00 43.62 3.18
281 282 3.380004 ACGCAAGAAATCCAACAGTGAAA 59.620 39.130 0.00 0.00 43.62 2.69
282 283 4.142271 ACGCAAGAAATCCAACAGTGAAAA 60.142 37.500 0.00 0.00 43.62 2.29
283 284 4.207019 CGCAAGAAATCCAACAGTGAAAAC 59.793 41.667 0.00 0.00 43.02 2.43
284 285 5.108517 GCAAGAAATCCAACAGTGAAAACA 58.891 37.500 0.00 0.00 0.00 2.83
285 286 5.232838 GCAAGAAATCCAACAGTGAAAACAG 59.767 40.000 0.00 0.00 0.00 3.16
286 287 6.332630 CAAGAAATCCAACAGTGAAAACAGT 58.667 36.000 0.00 0.00 0.00 3.55
287 288 6.530019 AGAAATCCAACAGTGAAAACAGTT 57.470 33.333 0.00 0.00 0.00 3.16
288 289 6.564328 AGAAATCCAACAGTGAAAACAGTTC 58.436 36.000 0.00 0.00 0.00 3.01
289 290 4.552166 ATCCAACAGTGAAAACAGTTCG 57.448 40.909 0.00 0.00 0.00 3.95
290 291 3.601435 TCCAACAGTGAAAACAGTTCGA 58.399 40.909 0.00 0.00 0.00 3.71
291 292 3.621268 TCCAACAGTGAAAACAGTTCGAG 59.379 43.478 0.00 0.00 0.00 4.04
292 293 3.621268 CCAACAGTGAAAACAGTTCGAGA 59.379 43.478 0.00 0.00 0.00 4.04
293 294 4.273480 CCAACAGTGAAAACAGTTCGAGAT 59.727 41.667 0.00 0.00 0.00 2.75
294 295 5.220854 CCAACAGTGAAAACAGTTCGAGATT 60.221 40.000 0.00 0.00 0.00 2.40
295 296 6.258160 CAACAGTGAAAACAGTTCGAGATTT 58.742 36.000 0.00 0.00 0.00 2.17
296 297 5.810525 ACAGTGAAAACAGTTCGAGATTTG 58.189 37.500 0.00 0.00 0.00 2.32
297 298 5.207768 CAGTGAAAACAGTTCGAGATTTGG 58.792 41.667 0.00 0.00 0.00 3.28
298 299 5.007626 CAGTGAAAACAGTTCGAGATTTGGA 59.992 40.000 0.00 0.00 0.00 3.53
299 300 5.007724 AGTGAAAACAGTTCGAGATTTGGAC 59.992 40.000 0.00 0.00 0.00 4.02
300 301 4.025229 TGAAAACAGTTCGAGATTTGGACG 60.025 41.667 0.00 0.00 0.00 4.79
301 302 1.429463 ACAGTTCGAGATTTGGACGC 58.571 50.000 0.00 0.00 0.00 5.19
302 303 1.270094 ACAGTTCGAGATTTGGACGCA 60.270 47.619 0.00 0.00 0.00 5.24
303 304 1.126846 CAGTTCGAGATTTGGACGCAC 59.873 52.381 0.00 0.00 0.00 5.34
304 305 0.093026 GTTCGAGATTTGGACGCACG 59.907 55.000 0.00 0.00 0.00 5.34
305 306 1.011968 TTCGAGATTTGGACGCACGG 61.012 55.000 0.00 0.00 0.00 4.94
306 307 1.736645 CGAGATTTGGACGCACGGT 60.737 57.895 0.00 0.00 0.00 4.83
307 308 1.289109 CGAGATTTGGACGCACGGTT 61.289 55.000 0.00 0.00 0.00 4.44
308 309 0.872388 GAGATTTGGACGCACGGTTT 59.128 50.000 0.00 0.00 0.00 3.27
309 310 2.070783 GAGATTTGGACGCACGGTTTA 58.929 47.619 0.00 0.00 0.00 2.01
310 311 2.481185 GAGATTTGGACGCACGGTTTAA 59.519 45.455 0.00 0.00 0.00 1.52
311 312 2.482721 AGATTTGGACGCACGGTTTAAG 59.517 45.455 0.00 0.00 0.00 1.85
312 313 1.950828 TTTGGACGCACGGTTTAAGA 58.049 45.000 0.00 0.00 0.00 2.10
313 314 1.504359 TTGGACGCACGGTTTAAGAG 58.496 50.000 0.00 0.00 0.00 2.85
314 315 0.675083 TGGACGCACGGTTTAAGAGA 59.325 50.000 0.00 0.00 0.00 3.10
315 316 1.274167 TGGACGCACGGTTTAAGAGAT 59.726 47.619 0.00 0.00 0.00 2.75
316 317 2.492881 TGGACGCACGGTTTAAGAGATA 59.507 45.455 0.00 0.00 0.00 1.98
317 318 3.056678 TGGACGCACGGTTTAAGAGATAA 60.057 43.478 0.00 0.00 0.00 1.75
318 319 3.550678 GGACGCACGGTTTAAGAGATAAG 59.449 47.826 0.00 0.00 0.00 1.73
319 320 4.418392 GACGCACGGTTTAAGAGATAAGA 58.582 43.478 0.00 0.00 0.00 2.10
320 321 5.007385 ACGCACGGTTTAAGAGATAAGAT 57.993 39.130 0.00 0.00 0.00 2.40
321 322 4.804139 ACGCACGGTTTAAGAGATAAGATG 59.196 41.667 0.00 0.00 0.00 2.90
322 323 4.804139 CGCACGGTTTAAGAGATAAGATGT 59.196 41.667 0.00 0.00 0.00 3.06
323 324 5.291128 CGCACGGTTTAAGAGATAAGATGTT 59.709 40.000 0.00 0.00 0.00 2.71
324 325 6.183360 CGCACGGTTTAAGAGATAAGATGTTT 60.183 38.462 0.00 0.00 0.00 2.83
325 326 7.527457 GCACGGTTTAAGAGATAAGATGTTTT 58.473 34.615 0.00 0.00 0.00 2.43
326 327 8.662141 GCACGGTTTAAGAGATAAGATGTTTTA 58.338 33.333 0.00 0.00 0.00 1.52
343 344 8.823818 AGATGTTTTAAATAAACGGATCTACGG 58.176 33.333 0.00 0.00 38.39 4.02
344 345 8.721019 ATGTTTTAAATAAACGGATCTACGGA 57.279 30.769 0.00 0.00 38.39 4.69
345 346 8.545229 TGTTTTAAATAAACGGATCTACGGAA 57.455 30.769 0.00 0.00 38.39 4.30
346 347 8.997323 TGTTTTAAATAAACGGATCTACGGAAA 58.003 29.630 0.00 0.00 38.39 3.13
347 348 9.824534 GTTTTAAATAAACGGATCTACGGAAAA 57.175 29.630 0.00 0.00 38.39 2.29
349 350 6.673154 AAATAAACGGATCTACGGAAAAGG 57.327 37.500 0.00 0.00 38.39 3.11
350 351 3.967332 AAACGGATCTACGGAAAAGGA 57.033 42.857 0.00 0.00 38.39 3.36
351 352 3.967332 AACGGATCTACGGAAAAGGAA 57.033 42.857 0.00 0.00 38.39 3.36
352 353 3.967332 ACGGATCTACGGAAAAGGAAA 57.033 42.857 0.00 0.00 38.39 3.13
353 354 4.276058 ACGGATCTACGGAAAAGGAAAA 57.724 40.909 0.00 0.00 38.39 2.29
354 355 4.644498 ACGGATCTACGGAAAAGGAAAAA 58.356 39.130 0.00 0.00 38.39 1.94
355 356 4.453478 ACGGATCTACGGAAAAGGAAAAAC 59.547 41.667 0.00 0.00 38.39 2.43
356 357 4.694037 CGGATCTACGGAAAAGGAAAAACT 59.306 41.667 0.00 0.00 0.00 2.66
357 358 5.180680 CGGATCTACGGAAAAGGAAAAACTT 59.819 40.000 0.00 0.00 0.00 2.66
358 359 6.293790 CGGATCTACGGAAAAGGAAAAACTTT 60.294 38.462 0.00 0.00 42.17 2.66
359 360 7.082602 GGATCTACGGAAAAGGAAAAACTTTC 58.917 38.462 0.00 0.00 39.63 2.62
360 361 7.255346 GGATCTACGGAAAAGGAAAAACTTTCA 60.255 37.037 0.00 0.00 39.63 2.69
361 362 7.393841 TCTACGGAAAAGGAAAAACTTTCAA 57.606 32.000 1.88 0.00 39.63 2.69
362 363 7.477494 TCTACGGAAAAGGAAAAACTTTCAAG 58.523 34.615 1.88 0.00 39.63 3.02
363 364 6.032956 ACGGAAAAGGAAAAACTTTCAAGT 57.967 33.333 1.88 0.00 39.63 3.16
374 375 3.405170 ACTTTCAAGTTGCGACAAGTG 57.595 42.857 6.90 1.53 35.21 3.16
375 376 2.097466 ACTTTCAAGTTGCGACAAGTGG 59.903 45.455 6.90 0.00 35.21 4.00
376 377 0.380378 TTCAAGTTGCGACAAGTGGC 59.620 50.000 6.90 0.00 34.76 5.01
384 385 1.419922 CGACAAGTGGCGTACATGC 59.580 57.895 0.00 0.00 42.66 4.06
385 386 1.014044 CGACAAGTGGCGTACATGCT 61.014 55.000 0.00 0.00 42.66 3.79
386 387 1.734377 CGACAAGTGGCGTACATGCTA 60.734 52.381 0.00 0.00 42.66 3.49
387 388 2.550978 GACAAGTGGCGTACATGCTAT 58.449 47.619 0.00 0.00 31.33 2.97
388 389 2.279741 ACAAGTGGCGTACATGCTATG 58.720 47.619 0.00 0.00 31.33 2.23
389 390 1.003545 CAAGTGGCGTACATGCTATGC 60.004 52.381 9.64 9.64 34.52 3.14
390 391 0.875908 AGTGGCGTACATGCTATGCG 60.876 55.000 11.08 1.86 34.52 4.73
391 392 2.243957 TGGCGTACATGCTATGCGC 61.244 57.895 0.00 0.00 46.24 6.09
392 393 2.551270 GCGTACATGCTATGCGCC 59.449 61.111 4.18 0.00 41.93 6.53
393 394 2.243957 GCGTACATGCTATGCGCCA 61.244 57.895 4.18 0.00 41.93 5.69
394 395 1.564622 CGTACATGCTATGCGCCAC 59.435 57.895 4.18 0.00 38.05 5.01
395 396 0.875908 CGTACATGCTATGCGCCACT 60.876 55.000 4.18 0.00 38.05 4.00
396 397 1.299541 GTACATGCTATGCGCCACTT 58.700 50.000 4.18 0.00 38.05 3.16
397 398 1.003545 GTACATGCTATGCGCCACTTG 60.004 52.381 4.18 2.75 38.05 3.16
398 399 0.677731 ACATGCTATGCGCCACTTGT 60.678 50.000 4.18 3.40 38.05 3.16
399 400 0.028505 CATGCTATGCGCCACTTGTC 59.971 55.000 4.18 0.00 38.05 3.18
400 401 0.392863 ATGCTATGCGCCACTTGTCA 60.393 50.000 4.18 0.00 38.05 3.58
401 402 0.392863 TGCTATGCGCCACTTGTCAT 60.393 50.000 4.18 0.00 38.05 3.06
402 403 1.134551 TGCTATGCGCCACTTGTCATA 60.135 47.619 4.18 0.00 38.05 2.15
403 404 1.939934 GCTATGCGCCACTTGTCATAA 59.060 47.619 4.18 0.00 0.00 1.90
404 405 2.549754 GCTATGCGCCACTTGTCATAAT 59.450 45.455 4.18 0.00 0.00 1.28
405 406 3.364366 GCTATGCGCCACTTGTCATAATC 60.364 47.826 4.18 0.00 0.00 1.75
406 407 2.401583 TGCGCCACTTGTCATAATCT 57.598 45.000 4.18 0.00 0.00 2.40
407 408 2.009051 TGCGCCACTTGTCATAATCTG 58.991 47.619 4.18 0.00 0.00 2.90
408 409 2.279741 GCGCCACTTGTCATAATCTGA 58.720 47.619 0.00 0.00 0.00 3.27
409 410 2.286294 GCGCCACTTGTCATAATCTGAG 59.714 50.000 0.00 0.00 33.51 3.35
410 411 3.785486 CGCCACTTGTCATAATCTGAGA 58.215 45.455 0.00 0.00 33.51 3.27
411 412 4.183865 CGCCACTTGTCATAATCTGAGAA 58.816 43.478 0.00 0.00 34.95 2.87
418 419 7.912056 CTTGTCATAATCTGAGAAGGTGAAA 57.088 36.000 4.65 0.00 46.45 2.69
419 420 7.912056 TTGTCATAATCTGAGAAGGTGAAAG 57.088 36.000 0.00 0.00 32.56 2.62
420 421 7.009179 TGTCATAATCTGAGAAGGTGAAAGT 57.991 36.000 0.00 0.00 33.51 2.66
421 422 6.875726 TGTCATAATCTGAGAAGGTGAAAGTG 59.124 38.462 0.00 0.00 33.51 3.16
422 423 7.099764 GTCATAATCTGAGAAGGTGAAAGTGA 58.900 38.462 0.00 0.00 33.51 3.41
423 424 7.768120 GTCATAATCTGAGAAGGTGAAAGTGAT 59.232 37.037 0.00 0.00 33.51 3.06
424 425 7.984050 TCATAATCTGAGAAGGTGAAAGTGATC 59.016 37.037 0.00 0.00 0.00 2.92
425 426 6.371595 AATCTGAGAAGGTGAAAGTGATCT 57.628 37.500 0.00 0.00 0.00 2.75
426 427 5.815233 TCTGAGAAGGTGAAAGTGATCTT 57.185 39.130 0.00 0.00 35.14 2.40
427 428 6.179906 TCTGAGAAGGTGAAAGTGATCTTT 57.820 37.500 0.00 0.00 45.24 2.52
428 429 5.994054 TCTGAGAAGGTGAAAGTGATCTTTG 59.006 40.000 0.00 0.00 42.99 2.77
429 430 4.516698 TGAGAAGGTGAAAGTGATCTTTGC 59.483 41.667 0.00 0.00 42.99 3.68
430 431 4.464008 AGAAGGTGAAAGTGATCTTTGCA 58.536 39.130 0.00 0.00 42.99 4.08
431 432 4.889409 AGAAGGTGAAAGTGATCTTTGCAA 59.111 37.500 0.00 0.00 42.99 4.08
432 433 4.843220 AGGTGAAAGTGATCTTTGCAAG 57.157 40.909 0.00 0.00 42.99 4.01
433 434 3.571401 AGGTGAAAGTGATCTTTGCAAGG 59.429 43.478 1.35 1.35 42.99 3.61
434 435 3.569701 GGTGAAAGTGATCTTTGCAAGGA 59.430 43.478 14.17 14.17 42.99 3.36
435 436 4.320788 GGTGAAAGTGATCTTTGCAAGGAG 60.321 45.833 16.88 4.58 42.99 3.69
436 437 4.276926 GTGAAAGTGATCTTTGCAAGGAGT 59.723 41.667 16.88 5.44 42.99 3.85
437 438 5.470098 GTGAAAGTGATCTTTGCAAGGAGTA 59.530 40.000 16.88 5.52 42.99 2.59
438 439 6.150140 GTGAAAGTGATCTTTGCAAGGAGTAT 59.850 38.462 16.88 0.00 42.99 2.12
439 440 6.716628 TGAAAGTGATCTTTGCAAGGAGTATT 59.283 34.615 16.88 7.34 42.99 1.89
440 441 7.231317 TGAAAGTGATCTTTGCAAGGAGTATTT 59.769 33.333 16.88 13.51 42.99 1.40
441 442 7.530426 AAGTGATCTTTGCAAGGAGTATTTT 57.470 32.000 16.88 5.14 0.00 1.82
442 443 7.530426 AGTGATCTTTGCAAGGAGTATTTTT 57.470 32.000 16.88 0.00 0.00 1.94
443 444 7.597386 AGTGATCTTTGCAAGGAGTATTTTTC 58.403 34.615 16.88 8.06 0.00 2.29
444 445 7.231317 AGTGATCTTTGCAAGGAGTATTTTTCA 59.769 33.333 16.88 10.45 0.00 2.69
445 446 7.867403 GTGATCTTTGCAAGGAGTATTTTTCAA 59.133 33.333 16.88 0.00 0.00 2.69
446 447 8.587608 TGATCTTTGCAAGGAGTATTTTTCAAT 58.412 29.630 16.88 0.00 0.00 2.57
447 448 9.428097 GATCTTTGCAAGGAGTATTTTTCAATT 57.572 29.630 16.88 0.00 0.00 2.32
449 450 9.912634 TCTTTGCAAGGAGTATTTTTCAATTAG 57.087 29.630 7.24 0.00 0.00 1.73
450 451 9.696917 CTTTGCAAGGAGTATTTTTCAATTAGT 57.303 29.630 1.58 0.00 0.00 2.24
451 452 9.474920 TTTGCAAGGAGTATTTTTCAATTAGTG 57.525 29.630 0.00 0.00 0.00 2.74
452 453 8.402798 TGCAAGGAGTATTTTTCAATTAGTGA 57.597 30.769 0.00 0.00 0.00 3.41
453 454 9.023962 TGCAAGGAGTATTTTTCAATTAGTGAT 57.976 29.630 0.00 0.00 35.70 3.06
454 455 9.860898 GCAAGGAGTATTTTTCAATTAGTGATT 57.139 29.630 0.00 0.00 35.70 2.57
534 543 7.050970 AGTTAAACTTCCCCAACATCTTTTC 57.949 36.000 0.00 0.00 0.00 2.29
545 554 3.007979 ACATCTTTTCGCCGAAAAACC 57.992 42.857 23.48 0.00 40.34 3.27
550 559 2.766970 TTTCGCCGAAAAACCTTCTG 57.233 45.000 10.27 0.00 0.00 3.02
648 657 3.829026 GGGAAAAGTGAGATGAAAGCCTT 59.171 43.478 0.00 0.00 0.00 4.35
667 688 3.243201 CCTTCTCACAAACTTGGTTGCTC 60.243 47.826 0.00 0.00 31.29 4.26
674 695 3.044986 CAAACTTGGTTGCTCGATTGTG 58.955 45.455 0.00 0.00 0.00 3.33
720 741 0.249405 GGCAGGAGATTCAGAGAGCG 60.249 60.000 0.00 0.00 0.00 5.03
721 742 0.875474 GCAGGAGATTCAGAGAGCGC 60.875 60.000 0.00 0.00 0.00 5.92
840 865 8.598202 TGTACCATGTAGAACAGGAATAGTTA 57.402 34.615 0.00 0.00 30.30 2.24
948 977 8.958119 TGATACATTCTACAATTACCTTCACC 57.042 34.615 0.00 0.00 0.00 4.02
984 1013 2.100603 CGCGTCCTCTTCCTCGTC 59.899 66.667 0.00 0.00 0.00 4.20
1540 1569 5.263185 CCGGCGTTTTGAATATTTAGTGAG 58.737 41.667 6.01 0.00 0.00 3.51
1542 1571 5.578776 GGCGTTTTGAATATTTAGTGAGGG 58.421 41.667 0.00 0.00 0.00 4.30
1543 1572 5.034797 GCGTTTTGAATATTTAGTGAGGGC 58.965 41.667 0.00 0.00 0.00 5.19
1568 1600 7.264947 CCAAAATTAAGCTGGGTTCGAATAAT 58.735 34.615 0.00 0.00 0.00 1.28
1704 1736 9.631257 TCTATTTCCTTGATTCATGCTCATAAA 57.369 29.630 0.00 0.00 0.00 1.40
1707 1739 9.760077 ATTTCCTTGATTCATGCTCATAAAATC 57.240 29.630 0.00 8.84 0.00 2.17
1708 1740 6.962686 TCCTTGATTCATGCTCATAAAATCG 58.037 36.000 0.00 0.00 30.70 3.34
1709 1741 6.767423 TCCTTGATTCATGCTCATAAAATCGA 59.233 34.615 0.00 0.00 30.70 3.59
1710 1742 6.854892 CCTTGATTCATGCTCATAAAATCGAC 59.145 38.462 0.00 0.00 30.70 4.20
1711 1743 6.923928 TGATTCATGCTCATAAAATCGACA 57.076 33.333 0.00 0.00 30.70 4.35
1712 1744 7.319142 TGATTCATGCTCATAAAATCGACAA 57.681 32.000 0.00 0.00 30.70 3.18
1713 1745 7.760437 TGATTCATGCTCATAAAATCGACAAA 58.240 30.769 0.00 0.00 30.70 2.83
1714 1746 8.242739 TGATTCATGCTCATAAAATCGACAAAA 58.757 29.630 0.00 0.00 30.70 2.44
1715 1747 8.624701 ATTCATGCTCATAAAATCGACAAAAG 57.375 30.769 0.00 0.00 0.00 2.27
1716 1748 7.376435 TCATGCTCATAAAATCGACAAAAGA 57.624 32.000 0.00 0.00 0.00 2.52
1717 1749 7.815641 TCATGCTCATAAAATCGACAAAAGAA 58.184 30.769 0.00 0.00 0.00 2.52
1718 1750 7.750458 TCATGCTCATAAAATCGACAAAAGAAC 59.250 33.333 0.00 0.00 0.00 3.01
1719 1751 6.378582 TGCTCATAAAATCGACAAAAGAACC 58.621 36.000 0.00 0.00 0.00 3.62
1720 1752 5.508224 GCTCATAAAATCGACAAAAGAACCG 59.492 40.000 0.00 0.00 0.00 4.44
1721 1753 5.387279 TCATAAAATCGACAAAAGAACCGC 58.613 37.500 0.00 0.00 0.00 5.68
1722 1754 3.982576 AAAATCGACAAAAGAACCGCT 57.017 38.095 0.00 0.00 0.00 5.52
1723 1755 3.982576 AAATCGACAAAAGAACCGCTT 57.017 38.095 0.00 0.00 38.88 4.68
1724 1756 2.969443 ATCGACAAAAGAACCGCTTG 57.031 45.000 0.00 0.00 36.80 4.01
1725 1757 1.942677 TCGACAAAAGAACCGCTTGA 58.057 45.000 0.00 0.00 36.80 3.02
1726 1758 2.281517 TCGACAAAAGAACCGCTTGAA 58.718 42.857 0.00 0.00 36.80 2.69
1727 1759 2.678836 TCGACAAAAGAACCGCTTGAAA 59.321 40.909 0.00 0.00 36.80 2.69
1728 1760 3.314080 TCGACAAAAGAACCGCTTGAAAT 59.686 39.130 0.00 0.00 36.80 2.17
1729 1761 4.512198 TCGACAAAAGAACCGCTTGAAATA 59.488 37.500 0.00 0.00 36.80 1.40
1730 1762 5.007823 TCGACAAAAGAACCGCTTGAAATAA 59.992 36.000 0.00 0.00 36.80 1.40
1731 1763 5.856455 CGACAAAAGAACCGCTTGAAATAAT 59.144 36.000 0.00 0.00 36.80 1.28
1732 1764 6.032460 CGACAAAAGAACCGCTTGAAATAATC 59.968 38.462 0.00 0.00 36.80 1.75
1733 1765 5.856455 ACAAAAGAACCGCTTGAAATAATCG 59.144 36.000 0.00 0.00 36.80 3.34
1734 1766 4.616181 AAGAACCGCTTGAAATAATCGG 57.384 40.909 0.00 0.00 45.04 4.18
1739 1771 3.873529 CCGCTTGAAATAATCGGTTAGC 58.126 45.455 0.00 0.00 35.75 3.09
1740 1772 3.560068 CCGCTTGAAATAATCGGTTAGCT 59.440 43.478 0.00 0.00 35.75 3.32
1741 1773 4.748102 CCGCTTGAAATAATCGGTTAGCTA 59.252 41.667 0.00 0.00 35.75 3.32
1742 1774 5.408604 CCGCTTGAAATAATCGGTTAGCTAT 59.591 40.000 0.00 0.00 35.75 2.97
1743 1775 6.401153 CCGCTTGAAATAATCGGTTAGCTATC 60.401 42.308 0.00 0.00 35.75 2.08
1744 1776 6.366332 CGCTTGAAATAATCGGTTAGCTATCT 59.634 38.462 0.00 0.00 0.00 1.98
1745 1777 7.410942 CGCTTGAAATAATCGGTTAGCTATCTC 60.411 40.741 0.00 0.00 0.00 2.75
1746 1778 7.385205 GCTTGAAATAATCGGTTAGCTATCTCA 59.615 37.037 0.00 0.00 0.00 3.27
1747 1779 9.261180 CTTGAAATAATCGGTTAGCTATCTCAA 57.739 33.333 0.00 0.00 0.00 3.02
1748 1780 9.607988 TTGAAATAATCGGTTAGCTATCTCAAA 57.392 29.630 0.00 0.00 0.00 2.69
1749 1781 9.607988 TGAAATAATCGGTTAGCTATCTCAAAA 57.392 29.630 0.00 0.00 0.00 2.44
1752 1784 8.958119 ATAATCGGTTAGCTATCTCAAAAACA 57.042 30.769 0.00 0.00 0.00 2.83
1753 1785 6.663944 ATCGGTTAGCTATCTCAAAAACAC 57.336 37.500 0.00 0.00 0.00 3.32
1754 1786 5.790593 TCGGTTAGCTATCTCAAAAACACT 58.209 37.500 0.00 0.00 0.00 3.55
1755 1787 6.927416 TCGGTTAGCTATCTCAAAAACACTA 58.073 36.000 0.00 0.00 0.00 2.74
1756 1788 7.380536 TCGGTTAGCTATCTCAAAAACACTAA 58.619 34.615 0.00 0.00 0.00 2.24
1757 1789 7.874016 TCGGTTAGCTATCTCAAAAACACTAAA 59.126 33.333 0.00 0.00 0.00 1.85
1758 1790 7.955864 CGGTTAGCTATCTCAAAAACACTAAAC 59.044 37.037 0.00 0.00 0.00 2.01
1759 1791 8.780249 GGTTAGCTATCTCAAAAACACTAAACA 58.220 33.333 0.00 0.00 0.00 2.83
1763 1795 9.899226 AGCTATCTCAAAAACACTAAACAAATC 57.101 29.630 0.00 0.00 0.00 2.17
1766 1798 8.782533 ATCTCAAAAACACTAAACAAATCGAC 57.217 30.769 0.00 0.00 0.00 4.20
1771 1803 7.749539 AAAACACTAAACAAATCGACAAAGG 57.250 32.000 0.00 0.00 0.00 3.11
1780 1812 3.334583 AATCGACAAAGGAGCAGCTAA 57.665 42.857 0.00 0.00 0.00 3.09
1781 1813 3.550437 ATCGACAAAGGAGCAGCTAAT 57.450 42.857 0.00 0.00 0.00 1.73
1782 1814 3.334583 TCGACAAAGGAGCAGCTAATT 57.665 42.857 0.00 0.00 0.00 1.40
1794 1826 4.319177 AGCAGCTAATTATTCTAAGCCGG 58.681 43.478 0.00 0.00 35.54 6.13
1838 1872 2.620115 ACTTTGCAGGTCAACATCACAG 59.380 45.455 0.00 0.00 33.73 3.66
1841 1875 2.497138 TGCAGGTCAACATCACAGAAG 58.503 47.619 0.00 0.00 0.00 2.85
1859 1893 4.997395 CAGAAGTACTACCATGTGCAGTTT 59.003 41.667 0.00 0.00 0.00 2.66
1996 2030 0.816018 TGGTACTTGTGTGGCGTTGG 60.816 55.000 0.00 0.00 0.00 3.77
2032 2066 6.071952 TGGAGGTCAAATATTCTCTTGTTTGC 60.072 38.462 0.00 0.00 32.95 3.68
2036 2070 6.024049 GTCAAATATTCTCTTGTTTGCGAGG 58.976 40.000 0.00 0.00 32.95 4.63
2043 2077 2.218603 TCTTGTTTGCGAGGGAGAAAC 58.781 47.619 0.00 0.00 0.00 2.78
2044 2078 2.158813 TCTTGTTTGCGAGGGAGAAACT 60.159 45.455 0.00 0.00 32.01 2.66
2075 2109 1.571919 AATAGCACGGATCTTGACGC 58.428 50.000 0.00 0.00 0.00 5.19
2092 2126 0.661552 CGCAAAGCAGGATGATCCAG 59.338 55.000 14.90 6.90 39.61 3.86
2108 2142 3.451402 TCCAGACAGAAGGTGTAGCTA 57.549 47.619 0.00 0.00 40.56 3.32
2111 2145 3.380004 CCAGACAGAAGGTGTAGCTAGAG 59.620 52.174 0.00 0.00 40.56 2.43
2147 2181 1.968017 CTCAACCAGCACCGCATGT 60.968 57.895 0.00 0.00 0.00 3.21
2191 2230 2.022195 GTGCTGGTAGTGACGGATCTA 58.978 52.381 0.00 0.00 0.00 1.98
2246 2287 0.465705 GCCATGACCGAGGATGAGAA 59.534 55.000 0.00 0.00 0.00 2.87
2249 2290 3.609853 CCATGACCGAGGATGAGAAAAA 58.390 45.455 0.00 0.00 0.00 1.94
2262 2303 5.184671 GGATGAGAAAAAGAAGCTTCCATGT 59.815 40.000 22.81 7.16 0.00 3.21
2281 2323 1.135575 GTGCGGAAATGAGGCAGAAAG 60.136 52.381 0.00 0.00 37.36 2.62
2288 2330 1.376649 ATGAGGCAGAAAGGGAAGGT 58.623 50.000 0.00 0.00 0.00 3.50
2310 2352 1.152984 CCTGTGCCGGCCATGATTA 60.153 57.895 26.77 0.00 0.00 1.75
2311 2353 1.447317 CCTGTGCCGGCCATGATTAC 61.447 60.000 26.77 14.29 0.00 1.89
2318 2360 0.104120 CGGCCATGATTACGGACTCA 59.896 55.000 2.24 0.00 0.00 3.41
2323 2365 3.557595 GCCATGATTACGGACTCAAGAAG 59.442 47.826 0.00 0.00 0.00 2.85
2324 2366 3.557595 CCATGATTACGGACTCAAGAAGC 59.442 47.826 0.00 0.00 0.00 3.86
2355 2397 0.105224 TGTGGAAGACGCGGAAGAAA 59.895 50.000 12.47 0.00 0.00 2.52
2374 2416 2.403252 AAGGTTTCGGCTATGTCTGG 57.597 50.000 0.00 0.00 0.00 3.86
2388 2430 7.379750 GGCTATGTCTGGGAAGTAATAAGTAG 58.620 42.308 0.00 0.00 0.00 2.57
2389 2431 7.015389 GGCTATGTCTGGGAAGTAATAAGTAGT 59.985 40.741 0.00 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.371267 GCGAAAGGAAAACCGTGCC 60.371 57.895 0.00 0.00 0.00 5.01
1 2 1.724581 CGCGAAAGGAAAACCGTGC 60.725 57.895 0.00 0.00 0.00 5.34
2 3 0.110823 CTCGCGAAAGGAAAACCGTG 60.111 55.000 11.33 0.00 0.00 4.94
3 4 0.249573 TCTCGCGAAAGGAAAACCGT 60.250 50.000 11.33 0.00 0.00 4.83
4 5 0.438830 CTCTCGCGAAAGGAAAACCG 59.561 55.000 11.33 0.00 0.00 4.44
5 6 0.796927 CCTCTCGCGAAAGGAAAACC 59.203 55.000 24.42 0.00 34.35 3.27
6 7 1.792006 TCCTCTCGCGAAAGGAAAAC 58.208 50.000 28.46 0.00 38.74 2.43
7 8 2.536761 TTCCTCTCGCGAAAGGAAAA 57.463 45.000 35.52 19.02 46.20 2.29
9 10 0.388134 CGTTCCTCTCGCGAAAGGAA 60.388 55.000 34.38 34.38 46.83 3.36
10 11 1.211969 CGTTCCTCTCGCGAAAGGA 59.788 57.895 27.04 27.04 39.94 3.36
11 12 1.071567 GTCGTTCCTCTCGCGAAAGG 61.072 60.000 22.81 22.81 36.37 3.11
12 13 1.071567 GGTCGTTCCTCTCGCGAAAG 61.072 60.000 11.33 6.30 36.37 2.62
13 14 1.080974 GGTCGTTCCTCTCGCGAAA 60.081 57.895 11.33 0.00 36.37 3.46
14 15 1.592400 ATGGTCGTTCCTCTCGCGAA 61.592 55.000 11.33 0.02 36.37 4.70
15 16 2.044555 ATGGTCGTTCCTCTCGCGA 61.045 57.895 9.26 9.26 37.07 5.87
16 17 1.874019 CATGGTCGTTCCTCTCGCG 60.874 63.158 0.00 0.00 37.07 5.87
17 18 2.167861 GCATGGTCGTTCCTCTCGC 61.168 63.158 0.00 0.00 37.07 5.03
18 19 1.519455 GGCATGGTCGTTCCTCTCG 60.519 63.158 0.00 0.00 37.07 4.04
19 20 0.179097 GAGGCATGGTCGTTCCTCTC 60.179 60.000 7.37 0.00 41.35 3.20
20 21 1.901085 GAGGCATGGTCGTTCCTCT 59.099 57.895 7.37 0.00 41.35 3.69
21 22 0.250513 AAGAGGCATGGTCGTTCCTC 59.749 55.000 6.68 6.68 44.09 3.71
22 23 0.036010 CAAGAGGCATGGTCGTTCCT 60.036 55.000 0.00 0.00 37.07 3.36
23 24 0.036388 TCAAGAGGCATGGTCGTTCC 60.036 55.000 0.00 0.00 0.00 3.62
24 25 1.808411 TTCAAGAGGCATGGTCGTTC 58.192 50.000 0.00 0.00 0.00 3.95
25 26 2.270352 TTTCAAGAGGCATGGTCGTT 57.730 45.000 0.00 0.00 0.00 3.85
26 27 1.880027 GTTTTCAAGAGGCATGGTCGT 59.120 47.619 0.00 0.00 0.00 4.34
27 28 1.135972 CGTTTTCAAGAGGCATGGTCG 60.136 52.381 0.00 0.00 0.00 4.79
28 29 2.151202 TCGTTTTCAAGAGGCATGGTC 58.849 47.619 0.00 0.00 0.00 4.02
29 30 2.270352 TCGTTTTCAAGAGGCATGGT 57.730 45.000 0.00 0.00 0.00 3.55
30 31 3.641437 TTTCGTTTTCAAGAGGCATGG 57.359 42.857 0.00 0.00 0.00 3.66
65 66 9.423061 CGTTCCTTTCATGGAATATTTTCTTTT 57.577 29.630 0.00 0.00 46.36 2.27
66 67 8.034804 CCGTTCCTTTCATGGAATATTTTCTTT 58.965 33.333 0.00 0.00 46.36 2.52
67 68 7.178451 ACCGTTCCTTTCATGGAATATTTTCTT 59.822 33.333 0.00 0.00 46.36 2.52
68 69 6.663523 ACCGTTCCTTTCATGGAATATTTTCT 59.336 34.615 0.00 0.00 46.36 2.52
69 70 6.863275 ACCGTTCCTTTCATGGAATATTTTC 58.137 36.000 0.00 0.00 46.36 2.29
70 71 6.850752 ACCGTTCCTTTCATGGAATATTTT 57.149 33.333 0.00 0.00 46.36 1.82
71 72 6.850752 AACCGTTCCTTTCATGGAATATTT 57.149 33.333 0.00 0.00 46.36 1.40
72 73 6.850752 AAACCGTTCCTTTCATGGAATATT 57.149 33.333 0.00 0.00 46.36 1.28
73 74 6.630071 CAAAACCGTTCCTTTCATGGAATAT 58.370 36.000 0.00 0.00 46.36 1.28
74 75 5.565834 GCAAAACCGTTCCTTTCATGGAATA 60.566 40.000 0.00 0.00 46.36 1.75
75 76 4.799255 GCAAAACCGTTCCTTTCATGGAAT 60.799 41.667 0.00 0.00 46.36 3.01
76 77 3.491792 GCAAAACCGTTCCTTTCATGGAA 60.492 43.478 0.00 0.00 43.16 3.53
77 78 2.035321 GCAAAACCGTTCCTTTCATGGA 59.965 45.455 0.00 0.00 0.00 3.41
78 79 2.035832 AGCAAAACCGTTCCTTTCATGG 59.964 45.455 0.00 0.00 0.00 3.66
79 80 3.369546 AGCAAAACCGTTCCTTTCATG 57.630 42.857 0.00 0.00 0.00 3.07
80 81 3.243737 GGAAGCAAAACCGTTCCTTTCAT 60.244 43.478 0.00 0.00 37.38 2.57
81 82 2.100087 GGAAGCAAAACCGTTCCTTTCA 59.900 45.455 0.00 0.00 37.38 2.69
82 83 2.739292 GGAAGCAAAACCGTTCCTTTC 58.261 47.619 0.00 0.00 37.38 2.62
83 84 1.066454 CGGAAGCAAAACCGTTCCTTT 59.934 47.619 0.00 0.00 43.53 3.11
84 85 0.666374 CGGAAGCAAAACCGTTCCTT 59.334 50.000 0.00 0.00 43.53 3.36
85 86 2.327228 CGGAAGCAAAACCGTTCCT 58.673 52.632 0.00 0.00 43.53 3.36
86 87 4.935630 CGGAAGCAAAACCGTTCC 57.064 55.556 0.00 0.00 43.53 3.62
98 99 2.507992 CAGTGCCTCTCGCGGAAG 60.508 66.667 6.13 3.71 42.08 3.46
99 100 2.867855 AACAGTGCCTCTCGCGGAA 61.868 57.895 6.13 0.00 42.08 4.30
100 101 3.303135 AACAGTGCCTCTCGCGGA 61.303 61.111 6.13 1.01 42.08 5.54
101 102 3.114616 CAACAGTGCCTCTCGCGG 61.115 66.667 6.13 0.00 42.08 6.46
102 103 2.356313 ACAACAGTGCCTCTCGCG 60.356 61.111 0.00 0.00 42.08 5.87
103 104 3.248029 CACAACAGTGCCTCTCGC 58.752 61.111 0.00 0.00 38.31 5.03
111 112 0.029300 CCCACGAAAGCACAACAGTG 59.971 55.000 0.00 0.00 36.35 3.66
112 113 0.107410 TCCCACGAAAGCACAACAGT 60.107 50.000 0.00 0.00 0.00 3.55
113 114 0.588252 CTCCCACGAAAGCACAACAG 59.412 55.000 0.00 0.00 0.00 3.16
114 115 0.817634 CCTCCCACGAAAGCACAACA 60.818 55.000 0.00 0.00 0.00 3.33
115 116 1.949257 CCTCCCACGAAAGCACAAC 59.051 57.895 0.00 0.00 0.00 3.32
116 117 1.896660 GCCTCCCACGAAAGCACAA 60.897 57.895 0.00 0.00 0.00 3.33
117 118 2.281484 GCCTCCCACGAAAGCACA 60.281 61.111 0.00 0.00 0.00 4.57
118 119 1.675641 ATGCCTCCCACGAAAGCAC 60.676 57.895 0.00 0.00 36.06 4.40
119 120 1.675310 CATGCCTCCCACGAAAGCA 60.675 57.895 0.00 0.00 37.94 3.91
120 121 2.409870 CCATGCCTCCCACGAAAGC 61.410 63.158 0.00 0.00 0.00 3.51
121 122 2.409870 GCCATGCCTCCCACGAAAG 61.410 63.158 0.00 0.00 0.00 2.62
122 123 2.361104 GCCATGCCTCCCACGAAA 60.361 61.111 0.00 0.00 0.00 3.46
123 124 4.424711 GGCCATGCCTCCCACGAA 62.425 66.667 0.00 0.00 46.69 3.85
133 134 3.056313 GAAAGAGCCACGGCCATGC 62.056 63.158 2.24 0.92 43.17 4.06
134 135 2.753966 CGAAAGAGCCACGGCCATG 61.754 63.158 2.24 0.00 43.17 3.66
135 136 2.436646 CGAAAGAGCCACGGCCAT 60.437 61.111 2.24 0.00 43.17 4.40
136 137 4.697756 CCGAAAGAGCCACGGCCA 62.698 66.667 2.24 0.00 43.17 5.36
137 138 3.894547 TTCCGAAAGAGCCACGGCC 62.895 63.158 3.95 0.00 45.25 6.13
138 139 1.912371 CTTTCCGAAAGAGCCACGGC 61.912 60.000 14.72 0.00 45.25 5.68
139 140 1.298859 CCTTTCCGAAAGAGCCACGG 61.299 60.000 20.43 0.00 46.71 4.94
140 141 0.320421 TCCTTTCCGAAAGAGCCACG 60.320 55.000 20.43 4.67 41.02 4.94
141 142 1.892209 TTCCTTTCCGAAAGAGCCAC 58.108 50.000 20.43 0.00 41.02 5.01
142 143 2.649531 TTTCCTTTCCGAAAGAGCCA 57.350 45.000 20.43 1.16 41.02 4.75
161 162 4.142038 ACCAAACCGAGAGCATAGTTTTT 58.858 39.130 0.00 0.00 30.27 1.94
162 163 3.751518 ACCAAACCGAGAGCATAGTTTT 58.248 40.909 0.00 0.00 30.27 2.43
163 164 3.418684 ACCAAACCGAGAGCATAGTTT 57.581 42.857 0.00 0.00 32.84 2.66
164 165 3.418684 AACCAAACCGAGAGCATAGTT 57.581 42.857 0.00 0.00 0.00 2.24
165 166 3.418684 AAACCAAACCGAGAGCATAGT 57.581 42.857 0.00 0.00 0.00 2.12
166 167 4.766404 AAAAACCAAACCGAGAGCATAG 57.234 40.909 0.00 0.00 0.00 2.23
215 216 9.713740 GATCTCATGTTGATAAGTTTGATGAAC 57.286 33.333 0.00 0.00 38.58 3.18
216 217 9.676861 AGATCTCATGTTGATAAGTTTGATGAA 57.323 29.630 0.00 0.00 0.00 2.57
238 239 6.199154 TGCGTCGAGATCTTCAAAATTAGATC 59.801 38.462 0.00 7.58 44.54 2.75
239 240 6.042777 TGCGTCGAGATCTTCAAAATTAGAT 58.957 36.000 0.00 0.00 33.92 1.98
240 241 5.407502 TGCGTCGAGATCTTCAAAATTAGA 58.592 37.500 0.00 0.00 0.00 2.10
241 242 5.702622 TGCGTCGAGATCTTCAAAATTAG 57.297 39.130 0.00 0.00 0.00 1.73
242 243 5.867174 TCTTGCGTCGAGATCTTCAAAATTA 59.133 36.000 0.00 0.00 0.00 1.40
243 244 4.690748 TCTTGCGTCGAGATCTTCAAAATT 59.309 37.500 0.00 0.00 0.00 1.82
244 245 4.245660 TCTTGCGTCGAGATCTTCAAAAT 58.754 39.130 0.00 0.00 0.00 1.82
245 246 3.649073 TCTTGCGTCGAGATCTTCAAAA 58.351 40.909 0.00 0.00 0.00 2.44
246 247 3.297830 TCTTGCGTCGAGATCTTCAAA 57.702 42.857 0.00 0.00 0.00 2.69
247 248 3.297830 TTCTTGCGTCGAGATCTTCAA 57.702 42.857 0.00 0.00 0.00 2.69
248 249 3.297830 TTTCTTGCGTCGAGATCTTCA 57.702 42.857 0.00 0.00 0.00 3.02
249 250 3.244111 GGATTTCTTGCGTCGAGATCTTC 59.756 47.826 0.00 0.00 0.00 2.87
250 251 3.190874 GGATTTCTTGCGTCGAGATCTT 58.809 45.455 0.00 0.00 0.00 2.40
251 252 2.166459 TGGATTTCTTGCGTCGAGATCT 59.834 45.455 0.00 0.00 0.00 2.75
252 253 2.540515 TGGATTTCTTGCGTCGAGATC 58.459 47.619 0.00 0.00 0.00 2.75
253 254 2.672961 TGGATTTCTTGCGTCGAGAT 57.327 45.000 0.00 0.00 0.00 2.75
254 255 2.066262 GTTGGATTTCTTGCGTCGAGA 58.934 47.619 0.00 0.00 0.00 4.04
255 256 1.798223 TGTTGGATTTCTTGCGTCGAG 59.202 47.619 0.00 0.00 0.00 4.04
256 257 1.798223 CTGTTGGATTTCTTGCGTCGA 59.202 47.619 0.00 0.00 0.00 4.20
257 258 1.531149 ACTGTTGGATTTCTTGCGTCG 59.469 47.619 0.00 0.00 0.00 5.12
258 259 2.548057 TCACTGTTGGATTTCTTGCGTC 59.452 45.455 0.00 0.00 0.00 5.19
259 260 2.571212 TCACTGTTGGATTTCTTGCGT 58.429 42.857 0.00 0.00 0.00 5.24
260 261 3.624326 TTCACTGTTGGATTTCTTGCG 57.376 42.857 0.00 0.00 0.00 4.85
261 262 5.108517 TGTTTTCACTGTTGGATTTCTTGC 58.891 37.500 0.00 0.00 0.00 4.01
262 263 6.332630 ACTGTTTTCACTGTTGGATTTCTTG 58.667 36.000 0.00 0.00 31.29 3.02
263 264 6.530019 ACTGTTTTCACTGTTGGATTTCTT 57.470 33.333 0.00 0.00 31.29 2.52
264 265 6.530019 AACTGTTTTCACTGTTGGATTTCT 57.470 33.333 0.00 0.00 41.95 2.52
265 266 5.455525 CGAACTGTTTTCACTGTTGGATTTC 59.544 40.000 2.74 0.00 43.15 2.17
266 267 5.124776 TCGAACTGTTTTCACTGTTGGATTT 59.875 36.000 2.74 0.00 43.15 2.17
267 268 4.638421 TCGAACTGTTTTCACTGTTGGATT 59.362 37.500 2.74 0.00 43.15 3.01
268 269 4.196193 TCGAACTGTTTTCACTGTTGGAT 58.804 39.130 2.74 0.00 43.15 3.41
269 270 3.601435 TCGAACTGTTTTCACTGTTGGA 58.399 40.909 2.74 4.52 43.15 3.53
270 271 3.621268 TCTCGAACTGTTTTCACTGTTGG 59.379 43.478 2.74 2.43 43.15 3.77
271 272 4.857871 TCTCGAACTGTTTTCACTGTTG 57.142 40.909 2.74 0.00 43.15 3.33
272 273 6.258160 CAAATCTCGAACTGTTTTCACTGTT 58.742 36.000 0.00 0.00 45.10 3.16
273 274 5.220854 CCAAATCTCGAACTGTTTTCACTGT 60.221 40.000 0.00 0.00 36.68 3.55
274 275 5.007626 TCCAAATCTCGAACTGTTTTCACTG 59.992 40.000 0.00 0.00 0.00 3.66
275 276 5.007724 GTCCAAATCTCGAACTGTTTTCACT 59.992 40.000 0.00 0.00 0.00 3.41
276 277 5.205565 GTCCAAATCTCGAACTGTTTTCAC 58.794 41.667 0.00 0.00 0.00 3.18
277 278 4.025229 CGTCCAAATCTCGAACTGTTTTCA 60.025 41.667 0.00 0.00 0.00 2.69
278 279 4.455124 CGTCCAAATCTCGAACTGTTTTC 58.545 43.478 0.00 0.00 0.00 2.29
279 280 3.303791 GCGTCCAAATCTCGAACTGTTTT 60.304 43.478 0.00 0.00 0.00 2.43
280 281 2.223377 GCGTCCAAATCTCGAACTGTTT 59.777 45.455 0.00 0.00 0.00 2.83
281 282 1.798813 GCGTCCAAATCTCGAACTGTT 59.201 47.619 0.00 0.00 0.00 3.16
282 283 1.270094 TGCGTCCAAATCTCGAACTGT 60.270 47.619 0.00 0.00 0.00 3.55
283 284 1.126846 GTGCGTCCAAATCTCGAACTG 59.873 52.381 0.00 0.00 31.34 3.16
284 285 1.429463 GTGCGTCCAAATCTCGAACT 58.571 50.000 0.00 0.00 31.34 3.01
285 286 0.093026 CGTGCGTCCAAATCTCGAAC 59.907 55.000 0.00 0.00 0.00 3.95
286 287 1.011968 CCGTGCGTCCAAATCTCGAA 61.012 55.000 0.00 0.00 0.00 3.71
287 288 1.445410 CCGTGCGTCCAAATCTCGA 60.445 57.895 0.00 0.00 0.00 4.04
288 289 1.289109 AACCGTGCGTCCAAATCTCG 61.289 55.000 0.00 0.00 0.00 4.04
289 290 0.872388 AAACCGTGCGTCCAAATCTC 59.128 50.000 0.00 0.00 0.00 2.75
290 291 2.172851 TAAACCGTGCGTCCAAATCT 57.827 45.000 0.00 0.00 0.00 2.40
291 292 2.481185 TCTTAAACCGTGCGTCCAAATC 59.519 45.455 0.00 0.00 0.00 2.17
292 293 2.482721 CTCTTAAACCGTGCGTCCAAAT 59.517 45.455 0.00 0.00 0.00 2.32
293 294 1.868498 CTCTTAAACCGTGCGTCCAAA 59.132 47.619 0.00 0.00 0.00 3.28
294 295 1.068895 TCTCTTAAACCGTGCGTCCAA 59.931 47.619 0.00 0.00 0.00 3.53
295 296 0.675083 TCTCTTAAACCGTGCGTCCA 59.325 50.000 0.00 0.00 0.00 4.02
296 297 2.005971 ATCTCTTAAACCGTGCGTCC 57.994 50.000 0.00 0.00 0.00 4.79
297 298 4.418392 TCTTATCTCTTAAACCGTGCGTC 58.582 43.478 0.00 0.00 0.00 5.19
298 299 4.445452 TCTTATCTCTTAAACCGTGCGT 57.555 40.909 0.00 0.00 0.00 5.24
299 300 4.804139 ACATCTTATCTCTTAAACCGTGCG 59.196 41.667 0.00 0.00 0.00 5.34
300 301 6.663944 AACATCTTATCTCTTAAACCGTGC 57.336 37.500 0.00 0.00 0.00 5.34
317 318 8.823818 CCGTAGATCCGTTTATTTAAAACATCT 58.176 33.333 0.00 7.93 0.00 2.90
318 319 8.819974 TCCGTAGATCCGTTTATTTAAAACATC 58.180 33.333 0.00 0.00 0.00 3.06
319 320 8.721019 TCCGTAGATCCGTTTATTTAAAACAT 57.279 30.769 0.00 0.00 0.00 2.71
320 321 8.545229 TTCCGTAGATCCGTTTATTTAAAACA 57.455 30.769 0.00 0.00 0.00 2.83
321 322 9.824534 TTTTCCGTAGATCCGTTTATTTAAAAC 57.175 29.630 0.00 0.00 0.00 2.43
323 324 8.667463 CCTTTTCCGTAGATCCGTTTATTTAAA 58.333 33.333 0.00 0.00 0.00 1.52
324 325 8.040132 TCCTTTTCCGTAGATCCGTTTATTTAA 58.960 33.333 0.00 0.00 0.00 1.52
325 326 7.555087 TCCTTTTCCGTAGATCCGTTTATTTA 58.445 34.615 0.00 0.00 0.00 1.40
326 327 6.408869 TCCTTTTCCGTAGATCCGTTTATTT 58.591 36.000 0.00 0.00 0.00 1.40
327 328 5.981174 TCCTTTTCCGTAGATCCGTTTATT 58.019 37.500 0.00 0.00 0.00 1.40
328 329 5.603170 TCCTTTTCCGTAGATCCGTTTAT 57.397 39.130 0.00 0.00 0.00 1.40
329 330 5.404466 TTCCTTTTCCGTAGATCCGTTTA 57.596 39.130 0.00 0.00 0.00 2.01
330 331 3.967332 TCCTTTTCCGTAGATCCGTTT 57.033 42.857 0.00 0.00 0.00 3.60
331 332 3.967332 TTCCTTTTCCGTAGATCCGTT 57.033 42.857 0.00 0.00 0.00 4.44
332 333 3.967332 TTTCCTTTTCCGTAGATCCGT 57.033 42.857 0.00 0.00 0.00 4.69
333 334 4.694037 AGTTTTTCCTTTTCCGTAGATCCG 59.306 41.667 0.00 0.00 0.00 4.18
334 335 6.570672 AAGTTTTTCCTTTTCCGTAGATCC 57.429 37.500 0.00 0.00 0.00 3.36
335 336 7.645402 TGAAAGTTTTTCCTTTTCCGTAGATC 58.355 34.615 0.00 0.00 34.87 2.75
336 337 7.576861 TGAAAGTTTTTCCTTTTCCGTAGAT 57.423 32.000 0.00 0.00 34.87 1.98
337 338 7.121611 ACTTGAAAGTTTTTCCTTTTCCGTAGA 59.878 33.333 0.00 0.00 35.21 2.59
338 339 7.255569 ACTTGAAAGTTTTTCCTTTTCCGTAG 58.744 34.615 0.00 0.00 35.21 3.51
339 340 7.160547 ACTTGAAAGTTTTTCCTTTTCCGTA 57.839 32.000 0.00 0.00 35.21 4.02
340 341 6.032956 ACTTGAAAGTTTTTCCTTTTCCGT 57.967 33.333 0.00 0.00 35.21 4.69
341 342 6.672118 GCAACTTGAAAGTTTTTCCTTTTCCG 60.672 38.462 5.70 0.00 46.52 4.30
342 343 6.542852 GCAACTTGAAAGTTTTTCCTTTTCC 58.457 36.000 5.70 0.00 46.52 3.13
343 344 6.090223 TCGCAACTTGAAAGTTTTTCCTTTTC 59.910 34.615 5.70 0.00 46.52 2.29
344 345 5.929415 TCGCAACTTGAAAGTTTTTCCTTTT 59.071 32.000 5.70 0.00 46.52 2.27
345 346 5.347635 GTCGCAACTTGAAAGTTTTTCCTTT 59.652 36.000 5.70 0.00 46.52 3.11
346 347 4.862574 GTCGCAACTTGAAAGTTTTTCCTT 59.137 37.500 5.70 0.00 46.52 3.36
347 348 4.082463 TGTCGCAACTTGAAAGTTTTTCCT 60.082 37.500 5.70 0.00 46.52 3.36
348 349 4.170256 TGTCGCAACTTGAAAGTTTTTCC 58.830 39.130 5.70 0.00 46.52 3.13
349 350 5.344933 ACTTGTCGCAACTTGAAAGTTTTTC 59.655 36.000 5.70 0.00 46.52 2.29
350 351 5.118510 CACTTGTCGCAACTTGAAAGTTTTT 59.881 36.000 5.70 0.00 46.52 1.94
351 352 4.621034 CACTTGTCGCAACTTGAAAGTTTT 59.379 37.500 5.70 0.00 46.52 2.43
352 353 4.165779 CACTTGTCGCAACTTGAAAGTTT 58.834 39.130 5.70 0.00 46.52 2.66
354 355 2.097466 CCACTTGTCGCAACTTGAAAGT 59.903 45.455 0.00 0.00 42.04 2.66
355 356 2.719798 CCACTTGTCGCAACTTGAAAG 58.280 47.619 0.00 0.00 0.00 2.62
356 357 1.202245 GCCACTTGTCGCAACTTGAAA 60.202 47.619 0.00 0.00 0.00 2.69
357 358 0.380378 GCCACTTGTCGCAACTTGAA 59.620 50.000 0.00 0.00 0.00 2.69
358 359 1.771073 CGCCACTTGTCGCAACTTGA 61.771 55.000 0.00 0.00 0.00 3.02
359 360 1.369209 CGCCACTTGTCGCAACTTG 60.369 57.895 0.00 0.00 0.00 3.16
360 361 0.531090 TACGCCACTTGTCGCAACTT 60.531 50.000 0.00 0.00 0.00 2.66
361 362 1.068417 TACGCCACTTGTCGCAACT 59.932 52.632 0.00 0.00 0.00 3.16
362 363 1.203313 GTACGCCACTTGTCGCAAC 59.797 57.895 0.00 0.00 0.00 4.17
363 364 0.601576 ATGTACGCCACTTGTCGCAA 60.602 50.000 0.00 0.00 0.00 4.85
364 365 1.005512 ATGTACGCCACTTGTCGCA 60.006 52.632 0.00 0.00 0.00 5.10
365 366 1.419922 CATGTACGCCACTTGTCGC 59.580 57.895 0.00 0.00 0.00 5.19
366 367 1.014044 AGCATGTACGCCACTTGTCG 61.014 55.000 0.00 0.00 35.30 4.35
367 368 2.004583 TAGCATGTACGCCACTTGTC 57.995 50.000 0.00 0.48 35.30 3.18
368 369 2.279741 CATAGCATGTACGCCACTTGT 58.720 47.619 0.00 0.00 35.30 3.16
369 370 1.003545 GCATAGCATGTACGCCACTTG 60.004 52.381 0.00 0.00 35.82 3.16
370 371 1.299541 GCATAGCATGTACGCCACTT 58.700 50.000 0.00 0.00 0.00 3.16
371 372 0.875908 CGCATAGCATGTACGCCACT 60.876 55.000 0.00 0.00 0.00 4.00
372 373 1.564622 CGCATAGCATGTACGCCAC 59.435 57.895 0.00 0.00 0.00 5.01
373 374 4.026226 CGCATAGCATGTACGCCA 57.974 55.556 0.00 0.00 0.00 5.69
384 385 4.060900 AGATTATGACAAGTGGCGCATAG 58.939 43.478 10.83 0.00 0.00 2.23
385 386 3.809279 CAGATTATGACAAGTGGCGCATA 59.191 43.478 10.83 0.00 0.00 3.14
386 387 2.615447 CAGATTATGACAAGTGGCGCAT 59.385 45.455 10.83 0.00 0.00 4.73
387 388 2.009051 CAGATTATGACAAGTGGCGCA 58.991 47.619 10.83 0.00 0.00 6.09
388 389 2.279741 TCAGATTATGACAAGTGGCGC 58.720 47.619 0.00 0.00 31.12 6.53
389 390 3.785486 TCTCAGATTATGACAAGTGGCG 58.215 45.455 0.00 0.00 33.22 5.69
390 391 4.574013 CCTTCTCAGATTATGACAAGTGGC 59.426 45.833 0.00 0.00 33.40 5.01
391 392 5.583854 CACCTTCTCAGATTATGACAAGTGG 59.416 44.000 0.00 0.00 33.40 4.00
392 393 6.401394 TCACCTTCTCAGATTATGACAAGTG 58.599 40.000 0.00 0.00 33.40 3.16
393 394 6.611613 TCACCTTCTCAGATTATGACAAGT 57.388 37.500 0.00 0.00 33.40 3.16
394 395 7.605691 ACTTTCACCTTCTCAGATTATGACAAG 59.394 37.037 0.00 0.00 34.63 3.16
395 396 7.388776 CACTTTCACCTTCTCAGATTATGACAA 59.611 37.037 0.00 0.00 33.22 3.18
396 397 6.875726 CACTTTCACCTTCTCAGATTATGACA 59.124 38.462 0.00 0.00 33.22 3.58
397 398 7.099764 TCACTTTCACCTTCTCAGATTATGAC 58.900 38.462 0.00 0.00 33.22 3.06
398 399 7.244886 TCACTTTCACCTTCTCAGATTATGA 57.755 36.000 0.00 0.00 36.21 2.15
399 400 7.986320 AGATCACTTTCACCTTCTCAGATTATG 59.014 37.037 0.00 0.00 0.00 1.90
400 401 8.088463 AGATCACTTTCACCTTCTCAGATTAT 57.912 34.615 0.00 0.00 0.00 1.28
401 402 7.487822 AGATCACTTTCACCTTCTCAGATTA 57.512 36.000 0.00 0.00 0.00 1.75
402 403 6.371595 AGATCACTTTCACCTTCTCAGATT 57.628 37.500 0.00 0.00 0.00 2.40
403 404 6.371595 AAGATCACTTTCACCTTCTCAGAT 57.628 37.500 0.00 0.00 31.71 2.90
404 405 5.815233 AAGATCACTTTCACCTTCTCAGA 57.185 39.130 0.00 0.00 31.71 3.27
405 406 5.334724 GCAAAGATCACTTTCACCTTCTCAG 60.335 44.000 0.00 0.00 43.41 3.35
406 407 4.516698 GCAAAGATCACTTTCACCTTCTCA 59.483 41.667 0.00 0.00 43.41 3.27
407 408 4.516698 TGCAAAGATCACTTTCACCTTCTC 59.483 41.667 0.00 0.00 43.41 2.87
408 409 4.464008 TGCAAAGATCACTTTCACCTTCT 58.536 39.130 0.00 0.00 43.41 2.85
409 410 4.836125 TGCAAAGATCACTTTCACCTTC 57.164 40.909 0.00 0.00 43.41 3.46
424 425 9.696917 ACTAATTGAAAAATACTCCTTGCAAAG 57.303 29.630 0.00 0.00 45.69 2.77
425 426 9.474920 CACTAATTGAAAAATACTCCTTGCAAA 57.525 29.630 0.00 0.00 0.00 3.68
426 427 8.855110 TCACTAATTGAAAAATACTCCTTGCAA 58.145 29.630 0.00 0.00 0.00 4.08
427 428 8.402798 TCACTAATTGAAAAATACTCCTTGCA 57.597 30.769 0.00 0.00 0.00 4.08
428 429 9.860898 AATCACTAATTGAAAAATACTCCTTGC 57.139 29.630 0.00 0.00 37.92 4.01
439 440 9.927668 GGAAATCCTGAAATCACTAATTGAAAA 57.072 29.630 0.00 0.00 37.92 2.29
440 441 9.312904 AGGAAATCCTGAAATCACTAATTGAAA 57.687 29.630 0.00 0.00 46.55 2.69
441 442 8.884124 AGGAAATCCTGAAATCACTAATTGAA 57.116 30.769 0.00 0.00 46.55 2.69
476 477 4.819630 AGCTCGTGAAATCACCTAAAACAA 59.180 37.500 7.91 0.00 43.66 2.83
534 543 3.612472 TTTACAGAAGGTTTTTCGGCG 57.388 42.857 0.00 0.00 0.00 6.46
574 583 3.752796 CGAATTCCTCCCGCACTTA 57.247 52.632 0.00 0.00 0.00 2.24
580 589 2.203070 CCAGGCGAATTCCTCCCG 60.203 66.667 0.00 0.00 33.25 5.14
648 657 1.939934 CGAGCAACCAAGTTTGTGAGA 59.060 47.619 0.00 0.00 0.00 3.27
667 688 1.398390 GCTACTCAAAGCCCACAATCG 59.602 52.381 0.00 0.00 36.45 3.34
674 695 2.284190 CTGCTAAGCTACTCAAAGCCC 58.716 52.381 0.00 0.00 43.86 5.19
720 741 0.839946 AGACATGTATGACCAGGGGC 59.160 55.000 0.00 0.00 0.00 5.80
721 742 2.239654 ACAAGACATGTATGACCAGGGG 59.760 50.000 15.87 0.00 41.63 4.79
753 774 4.868195 CGTTAAGCAAAGCCAGGC 57.132 55.556 1.84 1.84 0.00 4.85
765 786 4.081862 AGCAGTCTACCATACTTGCGTTAA 60.082 41.667 0.00 0.00 0.00 2.01
969 998 1.924320 AAGCGACGAGGAAGAGGACG 61.924 60.000 0.00 0.00 0.00 4.79
984 1013 2.436646 ATGGCGAGGGTCAAAGCG 60.437 61.111 0.00 0.00 0.00 4.68
1293 1322 1.376683 GGTGCTGCCGTTGTATGGA 60.377 57.895 0.00 0.00 0.00 3.41
1296 1325 1.089481 CGATGGTGCTGCCGTTGTAT 61.089 55.000 0.00 0.00 41.21 2.29
1452 1481 2.202623 GCGTAGACGTCCAGCTGG 60.203 66.667 27.87 27.87 42.22 4.85
1453 1482 2.577112 CGCGTAGACGTCCAGCTG 60.577 66.667 13.01 6.78 42.22 4.24
1540 1569 1.275666 ACCCAGCTTAATTTTGGCCC 58.724 50.000 0.00 0.00 0.00 5.80
1542 1571 2.230266 TCGAACCCAGCTTAATTTTGGC 59.770 45.455 0.00 0.00 0.00 4.52
1543 1572 4.513198 TTCGAACCCAGCTTAATTTTGG 57.487 40.909 0.00 0.00 0.00 3.28
1568 1600 7.264221 ACACAAAGAATACTCAAACATTGCAA 58.736 30.769 0.00 0.00 0.00 4.08
1686 1718 7.412063 TGTCGATTTTATGAGCATGAATCAAG 58.588 34.615 0.00 0.00 0.00 3.02
1704 1736 2.875933 TCAAGCGGTTCTTTTGTCGATT 59.124 40.909 0.00 0.00 31.27 3.34
1705 1737 2.489971 TCAAGCGGTTCTTTTGTCGAT 58.510 42.857 0.00 0.00 31.27 3.59
1706 1738 1.942677 TCAAGCGGTTCTTTTGTCGA 58.057 45.000 0.00 0.00 31.27 4.20
1707 1739 2.748461 TTCAAGCGGTTCTTTTGTCG 57.252 45.000 0.00 0.00 31.27 4.35
1708 1740 6.032460 CGATTATTTCAAGCGGTTCTTTTGTC 59.968 38.462 0.00 0.00 31.27 3.18
1709 1741 5.856455 CGATTATTTCAAGCGGTTCTTTTGT 59.144 36.000 0.00 0.00 31.27 2.83
1710 1742 5.286082 CCGATTATTTCAAGCGGTTCTTTTG 59.714 40.000 5.57 0.00 43.48 2.44
1711 1743 5.399013 CCGATTATTTCAAGCGGTTCTTTT 58.601 37.500 5.57 0.00 43.48 2.27
1712 1744 4.981794 CCGATTATTTCAAGCGGTTCTTT 58.018 39.130 5.57 0.00 43.48 2.52
1713 1745 4.616181 CCGATTATTTCAAGCGGTTCTT 57.384 40.909 5.57 0.00 43.48 2.52
1719 1751 4.795970 AGCTAACCGATTATTTCAAGCG 57.204 40.909 0.00 0.00 34.01 4.68
1720 1752 7.385205 TGAGATAGCTAACCGATTATTTCAAGC 59.615 37.037 0.00 0.00 0.00 4.01
1721 1753 8.818141 TGAGATAGCTAACCGATTATTTCAAG 57.182 34.615 0.00 0.00 0.00 3.02
1722 1754 9.607988 TTTGAGATAGCTAACCGATTATTTCAA 57.392 29.630 0.00 0.00 29.86 2.69
1723 1755 9.607988 TTTTGAGATAGCTAACCGATTATTTCA 57.392 29.630 0.00 0.00 0.00 2.69
1726 1758 9.391006 TGTTTTTGAGATAGCTAACCGATTATT 57.609 29.630 0.00 0.00 0.00 1.40
1727 1759 8.827677 GTGTTTTTGAGATAGCTAACCGATTAT 58.172 33.333 0.00 0.00 0.00 1.28
1728 1760 8.038944 AGTGTTTTTGAGATAGCTAACCGATTA 58.961 33.333 0.00 0.00 0.00 1.75
1729 1761 6.879458 AGTGTTTTTGAGATAGCTAACCGATT 59.121 34.615 0.00 0.00 0.00 3.34
1730 1762 6.407202 AGTGTTTTTGAGATAGCTAACCGAT 58.593 36.000 0.00 0.00 0.00 4.18
1731 1763 5.790593 AGTGTTTTTGAGATAGCTAACCGA 58.209 37.500 0.00 0.00 0.00 4.69
1732 1764 7.591006 TTAGTGTTTTTGAGATAGCTAACCG 57.409 36.000 0.00 0.00 0.00 4.44
1733 1765 8.780249 TGTTTAGTGTTTTTGAGATAGCTAACC 58.220 33.333 0.00 0.00 0.00 2.85
1737 1769 9.899226 GATTTGTTTAGTGTTTTTGAGATAGCT 57.101 29.630 0.00 0.00 0.00 3.32
1738 1770 8.840867 CGATTTGTTTAGTGTTTTTGAGATAGC 58.159 33.333 0.00 0.00 0.00 2.97
1740 1772 9.872757 GTCGATTTGTTTAGTGTTTTTGAGATA 57.127 29.630 0.00 0.00 0.00 1.98
1741 1773 8.402472 TGTCGATTTGTTTAGTGTTTTTGAGAT 58.598 29.630 0.00 0.00 0.00 2.75
1742 1774 7.753659 TGTCGATTTGTTTAGTGTTTTTGAGA 58.246 30.769 0.00 0.00 0.00 3.27
1743 1775 7.962934 TGTCGATTTGTTTAGTGTTTTTGAG 57.037 32.000 0.00 0.00 0.00 3.02
1744 1776 8.744008 TTTGTCGATTTGTTTAGTGTTTTTGA 57.256 26.923 0.00 0.00 0.00 2.69
1745 1777 8.107564 CCTTTGTCGATTTGTTTAGTGTTTTTG 58.892 33.333 0.00 0.00 0.00 2.44
1746 1778 8.030106 TCCTTTGTCGATTTGTTTAGTGTTTTT 58.970 29.630 0.00 0.00 0.00 1.94
1747 1779 7.540299 TCCTTTGTCGATTTGTTTAGTGTTTT 58.460 30.769 0.00 0.00 0.00 2.43
1748 1780 7.090953 TCCTTTGTCGATTTGTTTAGTGTTT 57.909 32.000 0.00 0.00 0.00 2.83
1749 1781 6.687081 TCCTTTGTCGATTTGTTTAGTGTT 57.313 33.333 0.00 0.00 0.00 3.32
1750 1782 5.277828 GCTCCTTTGTCGATTTGTTTAGTGT 60.278 40.000 0.00 0.00 0.00 3.55
1751 1783 5.147162 GCTCCTTTGTCGATTTGTTTAGTG 58.853 41.667 0.00 0.00 0.00 2.74
1752 1784 4.819630 TGCTCCTTTGTCGATTTGTTTAGT 59.180 37.500 0.00 0.00 0.00 2.24
1753 1785 5.356882 TGCTCCTTTGTCGATTTGTTTAG 57.643 39.130 0.00 0.00 0.00 1.85
1754 1786 4.320202 GCTGCTCCTTTGTCGATTTGTTTA 60.320 41.667 0.00 0.00 0.00 2.01
1755 1787 3.550842 GCTGCTCCTTTGTCGATTTGTTT 60.551 43.478 0.00 0.00 0.00 2.83
1756 1788 2.030805 GCTGCTCCTTTGTCGATTTGTT 60.031 45.455 0.00 0.00 0.00 2.83
1757 1789 1.537202 GCTGCTCCTTTGTCGATTTGT 59.463 47.619 0.00 0.00 0.00 2.83
1758 1790 1.808945 AGCTGCTCCTTTGTCGATTTG 59.191 47.619 0.00 0.00 0.00 2.32
1759 1791 2.191128 AGCTGCTCCTTTGTCGATTT 57.809 45.000 0.00 0.00 0.00 2.17
1763 1795 5.525378 AGAATAATTAGCTGCTCCTTTGTCG 59.475 40.000 4.91 0.00 0.00 4.35
1766 1798 7.358830 GCTTAGAATAATTAGCTGCTCCTTTG 58.641 38.462 4.91 0.00 0.00 2.77
1771 1803 4.390297 CCGGCTTAGAATAATTAGCTGCTC 59.610 45.833 4.91 0.00 38.40 4.26
1805 1837 5.126869 TGACCTGCAAAGTTTCAGATTTCAA 59.873 36.000 13.42 0.00 32.26 2.69
1806 1838 4.644234 TGACCTGCAAAGTTTCAGATTTCA 59.356 37.500 13.42 10.53 32.26 2.69
1807 1839 5.186996 TGACCTGCAAAGTTTCAGATTTC 57.813 39.130 13.42 8.91 32.26 2.17
1838 1872 5.941948 AAAACTGCACATGGTAGTACTTC 57.058 39.130 0.00 0.00 42.03 3.01
1841 1875 5.941948 AGAAAAACTGCACATGGTAGTAC 57.058 39.130 0.00 0.00 42.03 2.73
1973 2007 0.249699 CGCCACACAAGTACCAGTCA 60.250 55.000 0.00 0.00 0.00 3.41
1996 2030 0.823356 TGACCTCCAACTTTGCAGGC 60.823 55.000 0.00 0.00 0.00 4.85
2075 2109 2.943690 CTGTCTGGATCATCCTGCTTTG 59.056 50.000 4.96 0.00 37.46 2.77
2092 2126 3.066203 GCTCTCTAGCTACACCTTCTGTC 59.934 52.174 0.00 0.00 45.85 3.51
2108 2142 2.675317 GCGTGGTGTTTCTATGCTCTCT 60.675 50.000 0.00 0.00 36.75 3.10
2111 2145 1.726853 AGCGTGGTGTTTCTATGCTC 58.273 50.000 0.00 0.00 44.61 4.26
2147 2181 4.690719 AACATCGCCGGGTCGCAA 62.691 61.111 2.18 0.00 0.00 4.85
2163 2197 0.396435 CACTACCAGCACCAGGACAA 59.604 55.000 0.00 0.00 0.00 3.18
2191 2230 3.560882 CCTTCTCCCACATGCTCTTCTTT 60.561 47.826 0.00 0.00 0.00 2.52
2227 2266 0.465705 TTCTCATCCTCGGTCATGGC 59.534 55.000 0.00 0.00 0.00 4.40
2228 2267 2.988010 TTTCTCATCCTCGGTCATGG 57.012 50.000 0.00 0.00 0.00 3.66
2236 2275 5.006386 TGGAAGCTTCTTTTTCTCATCCTC 58.994 41.667 25.05 4.70 0.00 3.71
2237 2276 4.990526 TGGAAGCTTCTTTTTCTCATCCT 58.009 39.130 25.05 0.00 0.00 3.24
2246 2287 1.270550 CCGCACATGGAAGCTTCTTTT 59.729 47.619 25.05 8.29 0.00 2.27
2249 2290 0.036732 TTCCGCACATGGAAGCTTCT 59.963 50.000 25.05 4.28 43.01 2.85
2262 2303 1.167851 CTTTCTGCCTCATTTCCGCA 58.832 50.000 0.00 0.00 0.00 5.69
2281 2323 0.463833 CGGCACAGGATTACCTTCCC 60.464 60.000 0.00 0.00 45.36 3.97
2288 2330 1.152984 CATGGCCGGCACAGGATTA 60.153 57.895 30.85 3.51 0.00 1.75
2310 2352 3.330267 GAATCTTGCTTCTTGAGTCCGT 58.670 45.455 0.00 0.00 0.00 4.69
2311 2353 2.675348 GGAATCTTGCTTCTTGAGTCCG 59.325 50.000 0.00 0.00 35.70 4.79
2355 2397 1.065418 CCCAGACATAGCCGAAACCTT 60.065 52.381 0.00 0.00 0.00 3.50
2374 2416 7.306953 CCTGCGATCTACTACTTATTACTTCC 58.693 42.308 0.00 0.00 0.00 3.46
2388 2430 1.878522 CACCACGCCTGCGATCTAC 60.879 63.158 19.52 0.00 42.83 2.59
2389 2431 2.049767 TCACCACGCCTGCGATCTA 61.050 57.895 19.52 0.00 42.83 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.