>input_sequence_77002
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--------------------------------------------------------------------ATGGCGACCGCG
ACGGCTGCCGCGCGGAGCCGGCAGATCCACCTGCGCTTCTACATGCACGACATCACCGGCGGCCCGGGACAGACGGCGGT
GCAGCTCGTGAAGGGGCCCGGCCCCGCGCACCCGTTCATGCCGGGCGCCCACTTCGGCGACACGACGGTGATCGACGACG
CGCTGACGGAAGGCCCCAGCGCGGCATCGCGGGCCGCCGGTCGCGCGCAGGGGTCGTACATGCTGGCGGGACTCAAGGAG
CCCGTGCTGATGGTGTCCATGACCGTGGCGCTCACGGGCGGTCCATACAACGGCAGCACCATCGCCGTGGTGGGCCGGGA
CGACATCTCCGCGGCGGTCAGGGAGCTCGCGGTCGCCGGCGGCACGGGCGCGTTCCGGAAGGCGACGGGGCACGTCCTGT
GGCGGACGGCCAGGATGGAGTCGCGCGACCACATGGTGCTCCAGCTGGACGTCTACGCGACCGTGCCGGCCGCTGTTGCT
GCTCCGGGCGACGGGCAGCGTGAGGCCGGCGTTTTGAATATTTAG-----------------------------------
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>chr6B_1_TraesCS6B01G138000
GGCACGGTTTTCCTTTCGCGAGAGGAACGACCATGCCTCTTGAAAACGAAAAAAACACATTTTTTAAAAGAAAATATTCC
ATGAAAGGAACGGTTTTGCTTCCGCGAGAGGCACTGTTGTGCTTTCGTGGGAGGCATGGCCGTGGCTCTTTCGGAAAGGA
AAAAAACTATGCTCTCGGTTTGGTTTTTTCGTCCGATTTTTTTCATGAAAAAAAAGTTCATCAAACTTATCAACATGAGA
TCTAATTTTGAAGATCTCGACGCAAGAAATCCAACAGTGAAAACAGTTCGAGATTTGGACGCACGGTTTAAGAGATAAGA
TGTTTTAAATAAACGGATCTACGGAAAAGGAAAAACTTTCAAGTTGCGACAAGTGGCGTACATGCTATGCGCCACTTGTC
ATAATCTGAGAAGGTGAAAGTGATCTTTGCAAGGAGTATTTTTCAATTAGTGATTTCAGGATTTCCTGGGAGCTTATTGT
TT-----TAGGTGATTTCACGAGCTAGATTACA---TAAGTTAAACTTCCCCAACATCTTTTCGCCGAAAAACCTTCTGT
AAAATTGACAAGTCTATACAAATAAGTGCGGGAGGAATTCGCCTGGGATGAAAACGTGAAAGCAACAGACAGAAGGGAAA
AGTGAGATGAAAGCCTT---CTCACAAACTTGGTTG---------CTCGATTGTGGGCTTTGAGTAGCTTAGCAGCAACC
TGGCAGGAGATTCAGAGAGCGCCCCTGGTCATACATGTCTTGTACGCATGGCGGCCTGGCTTTGCTTAACGCAAGTATGG
TAGACTGCTGCGCATGGCAACACAAATGGTCAC----CCTGTACCATGTAGAACAGGAATAGTTAGTTGGCCGAGCTGCC
GCCCATGGCGACCATCGTCGACTATATATTTACCATGAGCCATAAGT----AGTTCATTCATCGTTCCACATGATACATT
CTACAATTACCTTCACCATGATCGCATCGATGCCTCGCGTCCTCTTCCTCGTCGCTTTGACCCTCGCCATGGCGACCGCG
ACGGCTGCCGCGCGGAGCCGGCAGATCCACCTGCGCTTCTACATGCACGACATCACCGGCGGCCCGGGACAGACGGCGGT
GCAGCTCGTGAAGGGGCCCGGCCCCGCGCACCCGTTCATGCCGGGCGCCCACTTCGGCGACACGACGGTGATCGACGACG
CGCTGACGGAAGGCCCCAGCGCGGCATCGCGGGCCGCCGGTCGCGCGCAGGGGTCGTACATGCTGGCGGGACTCAAGGAG
CCCGTGCTGATGGTGTCCATGACCGTGGCGCTCACGGGCGGTCCATACAACGGCAGCACCATCGCCGTGGTGGGCCGGGA
CGACATCTCCGCGGCGGTCAGGGAGCTCGCGGTCGCCGGCGGCACGGGCGCGTTCCGGAAGGCGACGGGGCACGTCCTGT
GGCGGACGGCCAGGATGGAGTCGCGCGACCACATGGTGCTCCAGCTGGACGTCTACGCGACCGTGCCGGCCGCTGTTGCT
GCTCCGGGCGACGGGCAGCGTGAGGCCGGCGTTTTGAATATTTAGTGAGGGC---CAAAATTAAGCTGGGTTCGAATAAT
TGCAATGTTTGAGTATTCTTTGTGTTCGTGATTCACACGCATATTGTTTCGAATTTTTTATCCGATTTTATTGTTTAAAA
TAAAGAAAAACAGAGTAAAGAAAGTGGTTTCTATTTCCTTGATTCATGCTCATAAAATCGACAAAAGAACCGCTTGAAAT
AATCGGTTAGCTATCTCAAAAACACTAAACAAATCGACAAAGGAGCAGCTAATTATTCTAAGCCGGCCAAAAAACATTG-
-AAATCTGAAACTTTGCAGGTCAACATCACAGAAGTACTACCATGTGCAGTTTTTCTTTTGGATTTTTTTGGGCACAATA
GAAGTATATAGAATGATAAAAATTATTTTAAATTTCTAATTTGACAAATTTATGTTGCATACAAAAGCTGAATACATTTT
ATACACTGACTGGTACTTGTGTGGCGTTGGCCTGCAAAGTTGGAGGTCAAATATTCTCTTGTTTGCGAGGGAGAAACTTT
CTAAATAAAAATAGCACGGATCTTGACGCAAAGCAGGATGATCCAGACAGAAGGTGTAGCTAGAGAGCATAGAAACACCA
CGCTCAACCAGCACCGCATGTTGCGACCCGGCGATGTTGTCCTG-----GTGCTGGTAGTGACGGATCTAAAGAAGAGCA
TGTGGGAGAAGGCAACTCTGCGTCGGCCATGACCGA--GGATGAGAAAAAGAAGCTTCCATGTGCGGAA-ATGAGGCAGA
AAGGGAAGGTAATCCTGTGCCGGCCATGATTACGGACTCAAGAAGCAAGATTCCATCTGTGGAAGACGCGGAAGAAAAGG
TTTCGGCTATGTCTGGGAAGTAATAAGTAGTAGATCGCAGGCGTGGTGACCGTGATCACCCCCATGTCGGGCTGGGGAGC
TCGTACCTGGACAGAAACCCAGCGAAATTAGGATCTCGCCGGAAAGGAAAGGGATGATCGGCTTCCGGCCAGAATGGGGC
ATTGATGCAGGGAGTTGC
>chr6D_457
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--------------------------------------------------------CAGGATTTCCTGGGAGCTTACTGT
TT-----TAGGTGATTGCACGAGCTAGATTACA---TAAGTTAAACTTCCCCAACATCTTTTTGCCGAAAACC-TTTTCT
AGAATTGACAAGTC--TACAAAAAAGTGGGGTAGGAATTCGCCTGGGATGAAATCGTGAAAGCAACAGACAGAAGGGAAA
AGTGAGATGAAAGCCTCCTCCTCACAAACTTGGTTG---------CTAGATTGTTGGCTTTGAGTAGCTTAGCAGCAACC
TGGCAGGAGATTCAGAGAGC--CCCTGGTCATACATGTCTTGTACGCATGGCGACCTGGCTTTGCGTAACGCAAGTATGG
TAGACTGCTGCGCATGGCAACACAA-TGGTCAC----CCTGTACCATGTAGAACAGGAATACTTGGTTGGCCGAGCTGCC
GCCCATCGCGACCATCGTCGACTATATATTTACCATGAGCCATAAGTAA----TTCATTCATCGTTCCACATGATACATT
CTACAATTACCTTCACTATGATCGCATCGATGCCTCGGGTCCTCTTCCTCGTTGCTTTGACCGTCGCCATGGCAACCGCC
ACGTCTGGCGCGCGGAGCCGGCAGATCCACCTGCGCTTCTACATGCACGACATCACCGGCGGCCCGGGCCAGACGGCGGT
GCAGCTCGTGAAGGGGCCCGGCCCCGCGCACCCGTTCATGCCGGGCGCCCACTTCGGCGACACGACGGTGATCGACGACG
CGCTGACGGAAGGCCCCAGCGCGGCATCGCGGGCCGTCGGTCGCGCGCAGGGGTCGTACATGCTGGCGGGCCTCAAGGAG
CCCGTGCTGATGGTGTCCATGACAGTGGCGCTCACGGGCGGCGTGTATAACGGCAGCACCATCGCCGTGGTGGGCCGGGA
CGACATCTCCGCGGCGGTCAGGGAGCTCGCGGTCGCCGGCGGCACGGGCGCGTTCCGGAAGGCGACGGGGCACGTCCTCT
GGCGGACGGCCAGGATGGTGTCGCGCGACCACATGGTGCTGGAGCTGGACGTCTACGCGACCATGCCGGCCGCTGTTGCT
GCTCCGA---ACGGGCAGCGTCAGTCCGGCGTTTTGAATATTTAGTGAAGCTCCA-------AAGCTGGGTTCGAATAAG
TGCAATGTTTGAGTCTTCTGTGTCTTCGTGATTCCCACGCATATTGTTT-------------------------------
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>chr6A_457
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--------------------------------------------------------CAGGGTTCCCTAGGAGCTTTAGTG
TTTTATATAGGTGATTTCACGAGCTAGATTACATCCTAAGTTAAACTTCCCCAACATTTTTTTGCCGAAAAAC-TTCTCT
AAAATTGACAAGTCTATACAAAAAAGTGGGTGAGGAATTCGCCTGGGATGAAAACGTGAAAGCAACAGACAGAAGGAAAA
GGTGAAATGAAAGCCTCCTCCTCACACTTGGTAGCTACTACAGTACTAGATTGTCGGCTTTGAGTGGCTTAGCAGCAACC
TGGCAGGAGATTCAGAGAGC--CCCTGGTCATACATGTCTTGTACGCATGGCTACCTAGCTTTGCGTAACGCAAGTATGG
TAGACTGCTGCGCATGGCAAAACAA-TGGTCGCCCTGCCTGTACCAGGTGCAACAGGAATAGTTGGTAGGCTGAGCCGCT
GCCCATGGCGACCATCGTCGGCTATATGTATATATACAGCTCGTACCATGAAGTCCATTCATCGTTCCACATGATACATC
CTACAATTACGTCCGCAATTATCGCATCAATGCCTCGGGTCCTCTTCCTCGTTGCTTTGACCCTCGCCTTGGCAACCACG
ACGGCTGCCGCGCGGAGCCGGCAGATCCACCTGCGCTTCTACATGCACGACATCACCGGCGGCCCGGGCCAGACGGCGGT
GCAGCTCGTGAAGGGGCCCGGCCCCGCGCACCCGTTCATGCCGGGCGCCCACTTCGGCGACACGACGGTGATCGACGACG
CGCTGACGGAAGGCCCCAGCGCGGCATCGCGGGCCGTCGGTCGCGCGCAGGGGTCGTACATGCTGGCGGGACTCAAGGAG
CCCGTGCTGATGGTGTCCATAACCGTGGCGCTCACGGGCGGCCCGTACAACGGCAGCACCATCGCTGTGGTGGGCCGGGA
CGACATCTCCGCGGCGGTCAGGGAGCTCGCGGTCGCCGGCGGCACGGGCGCGTTCCGGAAGGCGACGGGGCACGTTCTGT
GGCGGACGGCCAGGATGGAGTCGCGCGATCACATGGTGCTGGAGCTGGACGTCTACGCGACCGTGCCGGCCGCTGTTGCT
GCTCCGATCGACGGGCAGCGTGAGGCCGGCGTTTTGAATATTTAGTGAAGAAGGACAAAATTAAGCTGGGTTAGAATAAG
CGCAATGTTTGAGTATTCTTTGTGTTCGTGATTCACACGCATATTGTTTCGAATTTTTTATCCGATTTTATTGTTTAAAA
TAAAGAAAAACAGAGTAAAGAAAGTGGTTTCTATTTCTTTGATTCATGCTCATAA-------------------------
-------------------------------AATTGATAAAGAAGCAGCTA---ATTCTAAGCCGACCAAAAAACACATT
TAAATCTGAAACTTTGCAGGTCAACATCACAAAATTACTACCATGTGCAGTTCTTCTTTTGGATTTTTTTGGGCACAATA
GAAATATATAGAATGATAAAAAATATTTTAGATTTATAACTTGACAAATTTATGTTGCATGCAAAAGCTGAATACATTTT
ATACACCGACTGGTACTTGTGTGGCGTTGACCTGCAAAGTTGGAGGTCAAATATTCTCTTGTTTGAGAGAGAGAAAA-TT
CTAAATAAAAATAGCACGGATCTTGACGTAAAGCAGGATGATCCATACAGAAGGTGTAGCTGGAAAGCATAGAAAATCCA
CGCTCAACCAGCACCGCATGGTGCGACCCGGCGATGGTGTCCTGGTGCTGTGCTGGTAGTGACGGATCTGAAGAAGAGCA
TGTGGGAGAAGGCAACTCTGCGTCGAGCATGACCAGCTGGATGAGAGAACGAAGCTTCCATGCGCGGAAGATGAGGCAGA
AAAGGAAGGCAATCCTGTGCCGGCCATGATTGAGGACTCGAGAAAGAAGATTCCATCTGTGGAAGACGCGGAAGAAGAGG
TTTCGGCTATGTCTGTGAAGTAATAAGTAC-AGATCGCAGGCGTGGTGACCGTGATCACCCCCATGTCGGGCTGGGGAGC
TCGTACCTGGACAGAAACCCAGCGAAATTAGGATCTCGCCGGAAAGGAAAGGGATGATCGGCTTCCGGCCAGAATGGGGC
GTTGATGCAGGGAGTTGC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------S---
--------------------------------------------------------------S----------S----S-
----------------------S-----S---------------------------------------------------
----------------S------------------------------S------S-------------------------
--------------------SS-------------------------------S-----------S--------------
-------------------------S--------------------------------------S---------------
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----------------S--------------------S--------------S--------------------S------
--------------------------------------------------------------------S-----------
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------------------------------------S-------------------------------------------
-----------------------------------------S--S-----------------------------------
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----------------------------------------SS--------------------------------------
------SS----------------------------------------S-SS---------------------------S
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-------------------------------------S-----------------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--S----S--------SSS-----------S----------SSS-
-------------------------------S--S-----------------S---------------------------
---S------------------S-------S----S---S--------------------S-------------------
------S----------------------S-----------------------------------S---S------SS--
----------------------------S----------------S---------------S--S----------SS---
--------------------S---------------S--------------------------------S----------
-------------------------SS-------SS----------S--S------------S-----------------
--S------S---------------------SS------S----SS------------------------------S---
---------------S-------------SS-------------------------------------------------
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S-----------------
>forward_400
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------------------------------------------------------------CATGCTATGCGCCACTTGTC
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>reverse_2290
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-------------------------------------------------AGAAGCTTCCATGTGCGGAA-----------
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