Multiple sequence alignment - TraesCS6B01G106700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G106700 chr6B 100.000 2213 0 0 1 2213 87494322 87496534 0.000000e+00 4087.0
1 TraesCS6B01G106700 chr6B 90.855 339 19 1 1 339 3962705 3962379 5.610000e-121 444.0
2 TraesCS6B01G106700 chr6B 85.088 114 10 6 1923 2033 617202097 617201988 2.320000e-20 110.0
3 TraesCS6B01G106700 chr6B 91.667 72 6 0 1923 1994 52032047 52031976 1.400000e-17 100.0
4 TraesCS6B01G106700 chr6D 92.225 836 43 10 705 1539 37402351 37403165 0.000000e+00 1164.0
5 TraesCS6B01G106700 chr6D 93.059 389 26 1 1535 1922 37403710 37404098 3.190000e-158 568.0
6 TraesCS6B01G106700 chr6A 90.166 844 57 15 714 1538 48647957 48648793 0.000000e+00 1075.0
7 TraesCS6B01G106700 chr6A 84.015 269 29 6 1915 2183 421201741 421201995 1.700000e-61 246.0
8 TraesCS6B01G106700 chr6A 82.301 113 17 3 1922 2032 590170000 590170111 6.510000e-16 95.3
9 TraesCS6B01G106700 chr4B 90.299 670 33 8 1 642 37380849 37380184 0.000000e+00 848.0
10 TraesCS6B01G106700 chr4B 84.300 293 25 10 1923 2208 658184859 658185137 1.300000e-67 267.0
11 TraesCS6B01G106700 chr7D 89.238 669 36 11 1 642 397544983 397545642 0.000000e+00 804.0
12 TraesCS6B01G106700 chr7D 87.211 649 39 13 1 622 536152486 536153117 0.000000e+00 699.0
13 TraesCS6B01G106700 chr2A 88.209 670 43 18 6 644 27735682 27736346 0.000000e+00 767.0
14 TraesCS6B01G106700 chr2A 87.892 669 41 15 1 642 527371477 527370822 0.000000e+00 750.0
15 TraesCS6B01G106700 chr5B 87.730 489 40 8 164 642 689983330 689983808 8.930000e-154 553.0
16 TraesCS6B01G106700 chr2D 85.333 525 40 16 1 501 56075882 56075371 1.960000e-140 508.0
17 TraesCS6B01G106700 chr7A 92.625 339 25 0 1 339 616936937 616936599 2.550000e-134 488.0
18 TraesCS6B01G106700 chr7A 92.337 261 16 1 382 642 616936443 616936187 3.470000e-98 368.0
19 TraesCS6B01G106700 chr7A 86.486 296 35 2 1923 2213 729073377 729073672 9.860000e-84 320.0
20 TraesCS6B01G106700 chr1D 90.882 340 17 3 1 339 296998107 296997781 5.610000e-121 444.0
21 TraesCS6B01G106700 chr2B 92.491 293 16 3 1926 2213 720591675 720591384 4.400000e-112 414.0
22 TraesCS6B01G106700 chr2B 92.395 263 16 1 380 642 734394554 734394812 2.680000e-99 372.0
23 TraesCS6B01G106700 chr2B 93.237 207 9 2 2012 2213 244561510 244561304 1.280000e-77 300.0
24 TraesCS6B01G106700 chr2B 87.342 79 9 1 1923 2001 556790577 556790500 3.030000e-14 89.8
25 TraesCS6B01G106700 chr7B 88.621 290 31 2 1921 2209 41963370 41963082 3.500000e-93 351.0
26 TraesCS6B01G106700 chr1A 90.152 264 22 1 379 642 549328969 549329228 7.570000e-90 340.0
27 TraesCS6B01G106700 chr4A 83.616 354 36 13 1 338 132062819 132063166 1.650000e-81 313.0
28 TraesCS6B01G106700 chr4D 86.219 283 25 7 1923 2203 96150478 96150748 5.980000e-76 294.0
29 TraesCS6B01G106700 chr5A 84.091 264 25 8 1923 2183 538239483 538239234 2.840000e-59 239.0
30 TraesCS6B01G106700 chr3D 84.291 261 21 10 1923 2183 454647093 454647333 1.020000e-58 237.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G106700 chr6B 87494322 87496534 2212 False 4087 4087 100.000 1 2213 1 chr6B.!!$F1 2212
1 TraesCS6B01G106700 chr6D 37402351 37404098 1747 False 866 1164 92.642 705 1922 2 chr6D.!!$F1 1217
2 TraesCS6B01G106700 chr6A 48647957 48648793 836 False 1075 1075 90.166 714 1538 1 chr6A.!!$F1 824
3 TraesCS6B01G106700 chr4B 37380184 37380849 665 True 848 848 90.299 1 642 1 chr4B.!!$R1 641
4 TraesCS6B01G106700 chr7D 397544983 397545642 659 False 804 804 89.238 1 642 1 chr7D.!!$F1 641
5 TraesCS6B01G106700 chr7D 536152486 536153117 631 False 699 699 87.211 1 622 1 chr7D.!!$F2 621
6 TraesCS6B01G106700 chr2A 27735682 27736346 664 False 767 767 88.209 6 644 1 chr2A.!!$F1 638
7 TraesCS6B01G106700 chr2A 527370822 527371477 655 True 750 750 87.892 1 642 1 chr2A.!!$R1 641
8 TraesCS6B01G106700 chr2D 56075371 56075882 511 True 508 508 85.333 1 501 1 chr2D.!!$R1 500
9 TraesCS6B01G106700 chr7A 616936187 616936937 750 True 428 488 92.481 1 642 2 chr7A.!!$R1 641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
925 1073 0.106819 GTGGAGAAGAGGCCATGCAT 60.107 55.0 5.01 0.0 36.41 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2059 2790 0.036388 TTCCCTTGTCATGCTCGACC 60.036 55.0 4.01 0.0 34.88 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 68 8.538409 TCATATTGGTGATGTCTCAAATATCG 57.462 34.615 3.04 0.00 28.77 2.92
259 265 9.930693 CAGGTAAGAGTTTTAAATCAGTAGTCT 57.069 33.333 0.00 0.00 0.00 3.24
329 359 5.330233 TGTTGGATGGAGAGAGTTAGTGTA 58.670 41.667 0.00 0.00 0.00 2.90
357 414 0.792640 CGCTTCAAACGACATGCTCT 59.207 50.000 0.00 0.00 0.00 4.09
360 417 1.532437 CTTCAAACGACATGCTCTGCA 59.468 47.619 0.00 0.00 44.86 4.41
380 440 5.363101 TGCAGCCATCTTCTAATCAAGTAG 58.637 41.667 0.00 0.00 0.00 2.57
388 534 8.363390 CCATCTTCTAATCAAGTAGTAGCATGA 58.637 37.037 0.00 0.00 0.00 3.07
423 569 1.837947 TGGTGCAGCTGGCCATTTT 60.838 52.632 17.12 0.00 43.89 1.82
429 575 0.245539 CAGCTGGCCATTTTGACTGG 59.754 55.000 5.51 0.00 36.81 4.00
452 598 4.463209 CATGTTAATCAACGCACGTCTTT 58.537 39.130 0.00 0.00 37.48 2.52
455 601 6.045698 TGTTAATCAACGCACGTCTTTAAA 57.954 33.333 0.00 0.00 37.48 1.52
509 655 6.371548 TGGCAATGTCAGAAGTAATACAAGAC 59.628 38.462 0.00 0.00 0.00 3.01
536 682 8.185506 TGTACTAATTGTATACGGTGGATGAT 57.814 34.615 0.00 0.00 33.23 2.45
631 777 2.493030 GCTGCATGCATGTCCACC 59.507 61.111 26.79 11.08 42.31 4.61
644 790 5.896106 TGCATGTCCACCCATAATTTATTGA 59.104 36.000 0.00 0.00 0.00 2.57
645 791 6.382282 TGCATGTCCACCCATAATTTATTGAA 59.618 34.615 0.00 0.00 0.00 2.69
646 792 6.701400 GCATGTCCACCCATAATTTATTGAAC 59.299 38.462 0.00 0.00 0.00 3.18
647 793 7.632462 GCATGTCCACCCATAATTTATTGAACA 60.632 37.037 0.00 0.00 0.00 3.18
648 794 7.969690 TGTCCACCCATAATTTATTGAACAT 57.030 32.000 0.00 0.00 0.00 2.71
649 795 7.780064 TGTCCACCCATAATTTATTGAACATG 58.220 34.615 0.00 0.00 0.00 3.21
650 796 7.398618 TGTCCACCCATAATTTATTGAACATGT 59.601 33.333 0.00 0.00 0.00 3.21
651 797 8.908903 GTCCACCCATAATTTATTGAACATGTA 58.091 33.333 0.00 0.00 0.00 2.29
652 798 8.908903 TCCACCCATAATTTATTGAACATGTAC 58.091 33.333 0.00 0.00 0.00 2.90
653 799 8.912988 CCACCCATAATTTATTGAACATGTACT 58.087 33.333 0.00 0.00 0.00 2.73
654 800 9.950680 CACCCATAATTTATTGAACATGTACTC 57.049 33.333 0.00 0.00 0.00 2.59
655 801 9.131791 ACCCATAATTTATTGAACATGTACTCC 57.868 33.333 0.00 0.00 0.00 3.85
656 802 9.354673 CCCATAATTTATTGAACATGTACTCCT 57.645 33.333 0.00 0.00 0.00 3.69
697 843 8.908172 AAAAGCGTTTAGATCACTAGTAGTAC 57.092 34.615 1.57 0.00 0.00 2.73
698 844 7.621428 AAGCGTTTAGATCACTAGTAGTACA 57.379 36.000 1.57 0.00 0.00 2.90
699 845 7.621428 AGCGTTTAGATCACTAGTAGTACAA 57.379 36.000 1.57 0.00 0.00 2.41
700 846 8.048534 AGCGTTTAGATCACTAGTAGTACAAA 57.951 34.615 1.57 0.00 0.00 2.83
701 847 8.684520 AGCGTTTAGATCACTAGTAGTACAAAT 58.315 33.333 1.57 0.00 0.00 2.32
702 848 8.744011 GCGTTTAGATCACTAGTAGTACAAATG 58.256 37.037 1.57 5.98 0.00 2.32
703 849 9.999009 CGTTTAGATCACTAGTAGTACAAATGA 57.001 33.333 1.57 3.22 0.00 2.57
711 857 7.036220 CACTAGTAGTACAAATGAAGGGAGTG 58.964 42.308 1.57 0.00 0.00 3.51
740 886 2.368875 GGAGGAAAGTGTCTCCAGTGAA 59.631 50.000 4.66 0.00 46.54 3.18
825 972 1.359833 CCAGCAAGCAAGAACGCAA 59.640 52.632 0.00 0.00 0.00 4.85
826 973 0.248990 CCAGCAAGCAAGAACGCAAA 60.249 50.000 0.00 0.00 0.00 3.68
836 983 0.383949 AGAACGCAAACGCCAAACAT 59.616 45.000 0.00 0.00 45.53 2.71
873 1020 5.162075 CCAACGTTCTTCAAGACCTAGTAG 58.838 45.833 0.00 0.00 0.00 2.57
876 1023 6.740411 ACGTTCTTCAAGACCTAGTAGTAG 57.260 41.667 0.00 0.00 0.00 2.57
881 1028 9.883142 GTTCTTCAAGACCTAGTAGTAGTACTA 57.117 37.037 15.22 15.22 40.23 1.82
912 1060 4.422073 AAACACATGTTCAGAGTGGAGA 57.578 40.909 0.00 0.00 37.25 3.71
922 1070 1.134461 CAGAGTGGAGAAGAGGCCATG 60.134 57.143 5.01 0.00 36.41 3.66
923 1071 0.463474 GAGTGGAGAAGAGGCCATGC 60.463 60.000 5.01 0.00 36.41 4.06
925 1073 0.106819 GTGGAGAAGAGGCCATGCAT 60.107 55.000 5.01 0.00 36.41 3.96
926 1074 1.141657 GTGGAGAAGAGGCCATGCATA 59.858 52.381 5.01 0.00 36.41 3.14
927 1075 1.141657 TGGAGAAGAGGCCATGCATAC 59.858 52.381 5.01 0.00 0.00 2.39
928 1076 1.506493 GAGAAGAGGCCATGCATACG 58.494 55.000 5.01 0.00 0.00 3.06
929 1077 1.069204 GAGAAGAGGCCATGCATACGA 59.931 52.381 5.01 0.00 0.00 3.43
995 1143 6.329496 TGCTGATAAAAATTAAGCTTTCGGG 58.671 36.000 3.20 0.00 34.92 5.14
1017 1165 0.255890 AAATGGCGCCACCTAGTCAT 59.744 50.000 35.50 10.89 40.22 3.06
1173 1321 0.525668 GTGTCCGCGTCTTCATCGAT 60.526 55.000 4.92 0.00 0.00 3.59
1209 1357 1.553690 CCAAGACCCCTGTCATCGGT 61.554 60.000 0.00 0.00 44.33 4.69
1232 1380 4.098055 AGCTAGCCACGTATGATTATCG 57.902 45.455 12.13 0.00 0.00 2.92
1242 1406 3.433274 CGTATGATTATCGGCTTGCATGT 59.567 43.478 1.14 0.00 0.00 3.21
1243 1407 4.625311 CGTATGATTATCGGCTTGCATGTA 59.375 41.667 1.14 0.00 0.00 2.29
1244 1408 5.291858 CGTATGATTATCGGCTTGCATGTAT 59.708 40.000 1.14 0.00 0.00 2.29
1245 1409 5.556355 ATGATTATCGGCTTGCATGTATG 57.444 39.130 1.14 0.00 0.00 2.39
1300 1464 6.137000 CACGTTTAATCATTTGCTCGATTACG 59.863 38.462 0.00 0.00 38.56 3.18
1374 1546 5.415221 AGCAGTCTGTAAGCAAGTTATCTC 58.585 41.667 0.93 0.00 0.00 2.75
1539 1720 9.206870 ACCACAATTTTGTCATTATTAGCAAAG 57.793 29.630 0.00 0.00 39.91 2.77
1567 2297 1.415659 GTAGCAGGATCCAGTGCAGAT 59.584 52.381 23.69 9.39 42.47 2.90
1589 2319 0.107214 GGGCCTGTTCGATGATTGGA 60.107 55.000 0.84 0.00 0.00 3.53
1599 2329 1.002430 CGATGATTGGATCCCCGTGAT 59.998 52.381 9.90 0.00 36.01 3.06
1630 2360 2.170738 GCAACTAATGGCTGCACGA 58.829 52.632 0.50 0.00 36.09 4.35
1655 2385 4.385405 GCGTGAGGGAGCAGTGCT 62.385 66.667 19.86 19.86 43.88 4.40
1681 2411 0.962855 GAAGGAAGGAGGCACAAGGC 60.963 60.000 0.00 0.00 43.74 4.35
1698 2428 0.592247 GGCAGTGTTGTGTTTGAGCG 60.592 55.000 0.00 0.00 0.00 5.03
1705 2435 0.400213 TTGTGTTTGAGCGGGAGGAT 59.600 50.000 0.00 0.00 0.00 3.24
1706 2436 0.036388 TGTGTTTGAGCGGGAGGATC 60.036 55.000 0.00 0.00 0.00 3.36
1757 2488 2.993539 GCTCGATTTAGGGGTGAGC 58.006 57.895 0.00 0.00 44.37 4.26
1810 2541 3.499745 GGGGTAGTGGACAAGTTGGATTT 60.500 47.826 7.96 0.00 0.00 2.17
1874 2605 0.104409 AAGAAGGTGGAGGAGGGTGT 60.104 55.000 0.00 0.00 0.00 4.16
1916 2647 2.300967 GGGTGATGCAGAGGTGGGA 61.301 63.158 0.00 0.00 0.00 4.37
1922 2653 2.439156 GCAGAGGTGGGATGGTGC 60.439 66.667 0.00 0.00 0.00 5.01
1923 2654 3.080641 CAGAGGTGGGATGGTGCA 58.919 61.111 0.00 0.00 0.00 4.57
1924 2655 1.077930 CAGAGGTGGGATGGTGCAG 60.078 63.158 0.00 0.00 0.00 4.41
1925 2656 2.273449 GAGGTGGGATGGTGCAGG 59.727 66.667 0.00 0.00 0.00 4.85
1926 2657 3.341629 AGGTGGGATGGTGCAGGG 61.342 66.667 0.00 0.00 0.00 4.45
1927 2658 4.447342 GGTGGGATGGTGCAGGGG 62.447 72.222 0.00 0.00 0.00 4.79
1928 2659 3.338250 GTGGGATGGTGCAGGGGA 61.338 66.667 0.00 0.00 0.00 4.81
1929 2660 3.016971 TGGGATGGTGCAGGGGAG 61.017 66.667 0.00 0.00 0.00 4.30
1930 2661 3.813724 GGGATGGTGCAGGGGAGG 61.814 72.222 0.00 0.00 0.00 4.30
1931 2662 4.512914 GGATGGTGCAGGGGAGGC 62.513 72.222 0.00 0.00 0.00 4.70
1932 2663 3.415087 GATGGTGCAGGGGAGGCT 61.415 66.667 0.00 0.00 0.00 4.58
1933 2664 3.412624 GATGGTGCAGGGGAGGCTC 62.413 68.421 5.78 5.78 0.00 4.70
1936 2667 4.106925 GTGCAGGGGAGGCTCCAG 62.107 72.222 33.27 22.69 38.64 3.86
1947 2678 4.643387 GCTCCAGCGTGGGGTTGT 62.643 66.667 5.90 0.00 41.16 3.32
1948 2679 2.669569 CTCCAGCGTGGGGTTGTG 60.670 66.667 4.52 0.00 38.32 3.33
1949 2680 3.476031 CTCCAGCGTGGGGTTGTGT 62.476 63.158 4.52 0.00 38.32 3.72
1950 2681 2.107041 CTCCAGCGTGGGGTTGTGTA 62.107 60.000 4.52 0.00 38.32 2.90
1951 2682 1.671054 CCAGCGTGGGGTTGTGTAG 60.671 63.158 0.00 0.00 32.67 2.74
1952 2683 1.671054 CAGCGTGGGGTTGTGTAGG 60.671 63.158 0.00 0.00 0.00 3.18
1953 2684 2.359478 GCGTGGGGTTGTGTAGGG 60.359 66.667 0.00 0.00 0.00 3.53
1954 2685 2.349755 CGTGGGGTTGTGTAGGGG 59.650 66.667 0.00 0.00 0.00 4.79
1955 2686 2.035155 GTGGGGTTGTGTAGGGGC 59.965 66.667 0.00 0.00 0.00 5.80
1956 2687 3.642503 TGGGGTTGTGTAGGGGCG 61.643 66.667 0.00 0.00 0.00 6.13
1957 2688 4.419921 GGGGTTGTGTAGGGGCGG 62.420 72.222 0.00 0.00 0.00 6.13
1972 2703 4.499633 CGGCCGCCCCAGGTAAAT 62.500 66.667 14.67 0.00 0.00 1.40
1973 2704 2.043349 GGCCGCCCCAGGTAAATT 60.043 61.111 0.00 0.00 0.00 1.82
1974 2705 1.684391 GGCCGCCCCAGGTAAATTT 60.684 57.895 0.00 0.00 0.00 1.82
1975 2706 1.261938 GGCCGCCCCAGGTAAATTTT 61.262 55.000 0.00 0.00 0.00 1.82
1976 2707 0.174845 GCCGCCCCAGGTAAATTTTC 59.825 55.000 0.00 0.00 0.00 2.29
1977 2708 0.454196 CCGCCCCAGGTAAATTTTCG 59.546 55.000 0.00 0.00 0.00 3.46
1978 2709 1.455248 CGCCCCAGGTAAATTTTCGA 58.545 50.000 0.00 0.00 0.00 3.71
1979 2710 1.813786 CGCCCCAGGTAAATTTTCGAA 59.186 47.619 0.00 0.00 0.00 3.71
1980 2711 2.229302 CGCCCCAGGTAAATTTTCGAAA 59.771 45.455 6.47 6.47 0.00 3.46
1981 2712 3.581755 GCCCCAGGTAAATTTTCGAAAC 58.418 45.455 10.79 0.00 0.00 2.78
1982 2713 3.615592 GCCCCAGGTAAATTTTCGAAACC 60.616 47.826 10.79 9.03 0.00 3.27
1983 2714 3.830178 CCCCAGGTAAATTTTCGAAACCT 59.170 43.478 10.79 11.40 41.24 3.50
1984 2715 5.011586 CCCCAGGTAAATTTTCGAAACCTA 58.988 41.667 16.18 0.87 38.51 3.08
1985 2716 5.124936 CCCCAGGTAAATTTTCGAAACCTAG 59.875 44.000 16.18 10.40 38.51 3.02
1986 2717 5.124936 CCCAGGTAAATTTTCGAAACCTAGG 59.875 44.000 16.18 14.87 38.51 3.02
1987 2718 5.124936 CCAGGTAAATTTTCGAAACCTAGGG 59.875 44.000 16.18 11.52 38.51 3.53
1988 2719 5.708697 CAGGTAAATTTTCGAAACCTAGGGT 59.291 40.000 16.18 2.44 38.51 4.34
1989 2720 6.880529 CAGGTAAATTTTCGAAACCTAGGGTA 59.119 38.462 16.18 0.00 38.51 3.69
1990 2721 6.881065 AGGTAAATTTTCGAAACCTAGGGTAC 59.119 38.462 15.27 8.79 38.78 3.34
1991 2722 8.014217 AGGTAAATTTTCGAAACCTAGGGTACC 61.014 40.741 15.27 15.37 40.39 3.34
2011 2742 0.969894 CCCCCTACTCATCTTAGCCG 59.030 60.000 0.00 0.00 0.00 5.52
2012 2743 0.969894 CCCCTACTCATCTTAGCCGG 59.030 60.000 0.00 0.00 0.00 6.13
2013 2744 0.318762 CCCTACTCATCTTAGCCGGC 59.681 60.000 21.89 21.89 0.00 6.13
2014 2745 0.039074 CCTACTCATCTTAGCCGGCG 60.039 60.000 23.20 7.22 0.00 6.46
2015 2746 0.039074 CTACTCATCTTAGCCGGCGG 60.039 60.000 24.35 24.35 0.00 6.13
2033 2764 4.864334 CCACCATGGGAGGCGAGC 62.864 72.222 18.09 0.00 32.67 5.03
2034 2765 4.100084 CACCATGGGAGGCGAGCA 62.100 66.667 18.09 0.00 0.00 4.26
2035 2766 3.790437 ACCATGGGAGGCGAGCAG 61.790 66.667 18.09 0.00 0.00 4.24
2036 2767 3.790437 CCATGGGAGGCGAGCAGT 61.790 66.667 2.85 0.00 0.00 4.40
2037 2768 2.270205 CATGGGAGGCGAGCAGTT 59.730 61.111 0.00 0.00 0.00 3.16
2038 2769 1.377725 CATGGGAGGCGAGCAGTTT 60.378 57.895 0.00 0.00 0.00 2.66
2039 2770 1.078143 ATGGGAGGCGAGCAGTTTC 60.078 57.895 0.00 0.00 0.00 2.78
2040 2771 2.815647 GGGAGGCGAGCAGTTTCG 60.816 66.667 0.00 0.00 43.23 3.46
2046 2777 3.951332 CGAGCAGTTTCGCTGGAA 58.049 55.556 0.00 0.00 44.01 3.53
2047 2778 1.784062 CGAGCAGTTTCGCTGGAAG 59.216 57.895 0.00 0.00 44.01 3.46
2048 2779 1.630244 CGAGCAGTTTCGCTGGAAGG 61.630 60.000 0.00 0.00 44.01 3.46
2049 2780 1.916697 GAGCAGTTTCGCTGGAAGGC 61.917 60.000 0.00 0.00 44.01 4.35
2050 2781 2.982744 GCAGTTTCGCTGGAAGGCC 61.983 63.158 0.00 0.00 45.14 5.19
2051 2782 1.302832 CAGTTTCGCTGGAAGGCCT 60.303 57.895 0.00 0.00 41.42 5.19
2052 2783 1.003233 AGTTTCGCTGGAAGGCCTC 60.003 57.895 5.23 0.00 32.80 4.70
2053 2784 1.302511 GTTTCGCTGGAAGGCCTCA 60.303 57.895 5.23 0.00 32.80 3.86
2054 2785 1.003355 TTTCGCTGGAAGGCCTCAG 60.003 57.895 15.59 15.59 32.80 3.35
2055 2786 2.469465 TTTCGCTGGAAGGCCTCAGG 62.469 60.000 20.06 11.81 32.80 3.86
2056 2787 3.710722 CGCTGGAAGGCCTCAGGT 61.711 66.667 20.06 0.00 34.31 4.00
2057 2788 2.270527 GCTGGAAGGCCTCAGGTC 59.729 66.667 20.06 8.45 34.31 3.85
2058 2789 2.297129 GCTGGAAGGCCTCAGGTCT 61.297 63.158 20.06 0.00 40.63 3.85
2059 2790 1.601171 CTGGAAGGCCTCAGGTCTG 59.399 63.158 5.23 0.00 36.17 3.51
2060 2791 1.908340 CTGGAAGGCCTCAGGTCTGG 61.908 65.000 5.23 0.00 36.17 3.86
2061 2792 1.920835 GGAAGGCCTCAGGTCTGGT 60.921 63.158 5.23 0.00 36.17 4.00
2062 2793 1.599576 GAAGGCCTCAGGTCTGGTC 59.400 63.158 5.23 0.00 36.17 4.02
2063 2794 2.232298 GAAGGCCTCAGGTCTGGTCG 62.232 65.000 5.23 0.00 36.17 4.79
2064 2795 2.680352 GGCCTCAGGTCTGGTCGA 60.680 66.667 0.00 0.00 0.00 4.20
2065 2796 2.716017 GGCCTCAGGTCTGGTCGAG 61.716 68.421 0.00 0.00 0.00 4.04
2066 2797 2.888863 CCTCAGGTCTGGTCGAGC 59.111 66.667 7.89 7.89 40.43 5.03
2067 2798 1.979155 CCTCAGGTCTGGTCGAGCA 60.979 63.158 17.59 17.59 42.56 4.26
2068 2799 1.326213 CCTCAGGTCTGGTCGAGCAT 61.326 60.000 18.98 0.00 42.56 3.79
2069 2800 0.179116 CTCAGGTCTGGTCGAGCATG 60.179 60.000 18.98 13.42 42.56 4.06
2070 2801 0.611896 TCAGGTCTGGTCGAGCATGA 60.612 55.000 18.98 15.62 42.56 3.07
2071 2802 0.459237 CAGGTCTGGTCGAGCATGAC 60.459 60.000 25.67 25.67 42.56 3.06
2072 2803 0.900182 AGGTCTGGTCGAGCATGACA 60.900 55.000 30.18 12.85 42.56 3.58
2073 2804 0.037326 GGTCTGGTCGAGCATGACAA 60.037 55.000 30.18 12.05 40.72 3.18
2074 2805 1.354040 GTCTGGTCGAGCATGACAAG 58.646 55.000 27.27 14.57 40.64 3.16
2075 2806 0.247460 TCTGGTCGAGCATGACAAGG 59.753 55.000 18.98 4.55 39.87 3.61
2076 2807 0.742281 CTGGTCGAGCATGACAAGGG 60.742 60.000 18.98 0.00 40.72 3.95
2077 2808 1.191489 TGGTCGAGCATGACAAGGGA 61.191 55.000 14.39 0.00 40.72 4.20
2078 2809 0.036388 GGTCGAGCATGACAAGGGAA 60.036 55.000 10.30 0.00 40.72 3.97
2079 2810 1.363744 GTCGAGCATGACAAGGGAAG 58.636 55.000 0.00 0.00 38.75 3.46
2080 2811 1.066858 GTCGAGCATGACAAGGGAAGA 60.067 52.381 0.00 0.00 38.75 2.87
2081 2812 1.205655 TCGAGCATGACAAGGGAAGAG 59.794 52.381 0.00 0.00 0.00 2.85
2082 2813 1.741732 CGAGCATGACAAGGGAAGAGG 60.742 57.143 0.00 0.00 0.00 3.69
2083 2814 1.556911 GAGCATGACAAGGGAAGAGGA 59.443 52.381 0.00 0.00 0.00 3.71
2084 2815 1.988107 AGCATGACAAGGGAAGAGGAA 59.012 47.619 0.00 0.00 0.00 3.36
2085 2816 2.376518 AGCATGACAAGGGAAGAGGAAA 59.623 45.455 0.00 0.00 0.00 3.13
2086 2817 3.157087 GCATGACAAGGGAAGAGGAAAA 58.843 45.455 0.00 0.00 0.00 2.29
2087 2818 3.057245 GCATGACAAGGGAAGAGGAAAAC 60.057 47.826 0.00 0.00 0.00 2.43
2088 2819 2.846193 TGACAAGGGAAGAGGAAAACG 58.154 47.619 0.00 0.00 0.00 3.60
2089 2820 2.436542 TGACAAGGGAAGAGGAAAACGA 59.563 45.455 0.00 0.00 0.00 3.85
2090 2821 3.072476 TGACAAGGGAAGAGGAAAACGAT 59.928 43.478 0.00 0.00 0.00 3.73
2091 2822 4.072839 GACAAGGGAAGAGGAAAACGATT 58.927 43.478 0.00 0.00 0.00 3.34
2092 2823 4.072839 ACAAGGGAAGAGGAAAACGATTC 58.927 43.478 0.00 0.00 0.00 2.52
2093 2824 2.973945 AGGGAAGAGGAAAACGATTCG 58.026 47.619 4.14 4.14 0.00 3.34
2094 2825 1.397343 GGGAAGAGGAAAACGATTCGC 59.603 52.381 5.86 0.00 0.00 4.70
2095 2826 2.347731 GGAAGAGGAAAACGATTCGCT 58.652 47.619 5.86 0.00 0.00 4.93
2096 2827 2.094417 GGAAGAGGAAAACGATTCGCTG 59.906 50.000 5.86 0.00 0.00 5.18
2097 2828 1.079503 AGAGGAAAACGATTCGCTGC 58.920 50.000 5.86 0.00 0.00 5.25
2098 2829 0.097150 GAGGAAAACGATTCGCTGCC 59.903 55.000 5.86 1.71 0.00 4.85
2099 2830 0.605319 AGGAAAACGATTCGCTGCCA 60.605 50.000 5.86 0.00 0.00 4.92
2100 2831 0.239879 GGAAAACGATTCGCTGCCAA 59.760 50.000 5.86 0.00 0.00 4.52
2101 2832 1.335506 GGAAAACGATTCGCTGCCAAA 60.336 47.619 5.86 0.00 0.00 3.28
2102 2833 1.713932 GAAAACGATTCGCTGCCAAAC 59.286 47.619 5.86 0.00 0.00 2.93
2103 2834 0.665835 AAACGATTCGCTGCCAAACA 59.334 45.000 5.86 0.00 0.00 2.83
2104 2835 0.881118 AACGATTCGCTGCCAAACAT 59.119 45.000 5.86 0.00 0.00 2.71
2105 2836 1.732941 ACGATTCGCTGCCAAACATA 58.267 45.000 5.86 0.00 0.00 2.29
2106 2837 2.080693 ACGATTCGCTGCCAAACATAA 58.919 42.857 5.86 0.00 0.00 1.90
2107 2838 2.159572 ACGATTCGCTGCCAAACATAAC 60.160 45.455 5.86 0.00 0.00 1.89
2108 2839 2.095853 CGATTCGCTGCCAAACATAACT 59.904 45.455 0.00 0.00 0.00 2.24
2109 2840 2.987413 TTCGCTGCCAAACATAACTG 57.013 45.000 0.00 0.00 0.00 3.16
2110 2841 0.521291 TCGCTGCCAAACATAACTGC 59.479 50.000 0.00 0.00 0.00 4.40
2111 2842 0.523072 CGCTGCCAAACATAACTGCT 59.477 50.000 0.00 0.00 0.00 4.24
2112 2843 1.466360 CGCTGCCAAACATAACTGCTC 60.466 52.381 0.00 0.00 0.00 4.26
2113 2844 1.466360 GCTGCCAAACATAACTGCTCG 60.466 52.381 0.00 0.00 0.00 5.03
2114 2845 0.521291 TGCCAAACATAACTGCTCGC 59.479 50.000 0.00 0.00 0.00 5.03
2115 2846 0.804989 GCCAAACATAACTGCTCGCT 59.195 50.000 0.00 0.00 0.00 4.93
2116 2847 2.006888 GCCAAACATAACTGCTCGCTA 58.993 47.619 0.00 0.00 0.00 4.26
2117 2848 2.030946 GCCAAACATAACTGCTCGCTAG 59.969 50.000 0.00 0.00 0.00 3.42
2118 2849 3.521560 CCAAACATAACTGCTCGCTAGA 58.478 45.455 0.00 0.00 0.00 2.43
2142 2873 9.600432 AGAGATCTATTAATCTATAGATGGGCC 57.400 37.037 16.01 0.00 44.15 5.80
2143 2874 9.373450 GAGATCTATTAATCTATAGATGGGCCA 57.627 37.037 16.01 9.61 44.15 5.36
2144 2875 9.735362 AGATCTATTAATCTATAGATGGGCCAA 57.265 33.333 16.01 0.00 44.15 4.52
2147 2878 9.506042 TCTATTAATCTATAGATGGGCCAATCA 57.494 33.333 22.62 8.68 33.33 2.57
2150 2881 6.460103 AATCTATAGATGGGCCAATCAAGT 57.540 37.500 22.62 9.69 34.49 3.16
2151 2882 7.574021 AATCTATAGATGGGCCAATCAAGTA 57.426 36.000 22.62 6.46 34.49 2.24
2152 2883 7.574021 ATCTATAGATGGGCCAATCAAGTAA 57.426 36.000 22.62 5.02 32.68 2.24
2153 2884 7.009179 TCTATAGATGGGCCAATCAAGTAAG 57.991 40.000 22.62 11.36 0.00 2.34
2154 2885 2.659428 AGATGGGCCAATCAAGTAAGC 58.341 47.619 22.62 0.00 0.00 3.09
2155 2886 1.683385 GATGGGCCAATCAAGTAAGCC 59.317 52.381 15.87 0.00 43.09 4.35
2157 2888 3.281332 GGCCAATCAAGTAAGCCCA 57.719 52.632 0.00 0.00 37.66 5.36
2158 2889 1.555967 GGCCAATCAAGTAAGCCCAA 58.444 50.000 0.00 0.00 37.66 4.12
2159 2890 2.110578 GGCCAATCAAGTAAGCCCAAT 58.889 47.619 0.00 0.00 37.66 3.16
2160 2891 3.295973 GGCCAATCAAGTAAGCCCAATA 58.704 45.455 0.00 0.00 37.66 1.90
2161 2892 3.704061 GGCCAATCAAGTAAGCCCAATAA 59.296 43.478 0.00 0.00 37.66 1.40
2162 2893 4.161377 GGCCAATCAAGTAAGCCCAATAAA 59.839 41.667 0.00 0.00 37.66 1.40
2163 2894 5.337975 GGCCAATCAAGTAAGCCCAATAAAA 60.338 40.000 0.00 0.00 37.66 1.52
2164 2895 6.169800 GCCAATCAAGTAAGCCCAATAAAAA 58.830 36.000 0.00 0.00 0.00 1.94
2165 2896 6.823182 GCCAATCAAGTAAGCCCAATAAAAAT 59.177 34.615 0.00 0.00 0.00 1.82
2166 2897 7.336679 GCCAATCAAGTAAGCCCAATAAAAATT 59.663 33.333 0.00 0.00 0.00 1.82
2167 2898 9.883142 CCAATCAAGTAAGCCCAATAAAAATTA 57.117 29.630 0.00 0.00 0.00 1.40
2174 2905 8.633561 AGTAAGCCCAATAAAAATTAGATGAGC 58.366 33.333 0.00 0.00 0.00 4.26
2175 2906 6.410942 AGCCCAATAAAAATTAGATGAGCC 57.589 37.500 0.00 0.00 0.00 4.70
2176 2907 5.305386 AGCCCAATAAAAATTAGATGAGCCC 59.695 40.000 0.00 0.00 0.00 5.19
2177 2908 5.070313 GCCCAATAAAAATTAGATGAGCCCA 59.930 40.000 0.00 0.00 0.00 5.36
2178 2909 6.239686 GCCCAATAAAAATTAGATGAGCCCAT 60.240 38.462 0.00 0.00 35.29 4.00
2179 2910 7.690054 GCCCAATAAAAATTAGATGAGCCCATT 60.690 37.037 0.00 0.00 32.09 3.16
2180 2911 8.869109 CCCAATAAAAATTAGATGAGCCCATTA 58.131 33.333 0.00 0.00 32.09 1.90
2181 2912 9.918630 CCAATAAAAATTAGATGAGCCCATTAG 57.081 33.333 0.00 0.00 32.09 1.73
2185 2916 7.730364 AAAATTAGATGAGCCCATTAGTACG 57.270 36.000 0.00 0.00 32.09 3.67
2186 2917 2.821991 AGATGAGCCCATTAGTACGC 57.178 50.000 0.00 0.00 32.09 4.42
2187 2918 2.039418 AGATGAGCCCATTAGTACGCA 58.961 47.619 0.00 0.00 32.09 5.24
2188 2919 2.036475 AGATGAGCCCATTAGTACGCAG 59.964 50.000 0.00 0.00 32.09 5.18
2189 2920 0.179084 TGAGCCCATTAGTACGCAGC 60.179 55.000 0.00 0.00 0.00 5.25
2190 2921 0.880718 GAGCCCATTAGTACGCAGCC 60.881 60.000 0.00 0.00 0.00 4.85
2191 2922 1.146263 GCCCATTAGTACGCAGCCT 59.854 57.895 0.00 0.00 0.00 4.58
2192 2923 1.160329 GCCCATTAGTACGCAGCCTG 61.160 60.000 0.00 0.00 0.00 4.85
2193 2924 0.464036 CCCATTAGTACGCAGCCTGA 59.536 55.000 0.00 0.00 0.00 3.86
2194 2925 1.070758 CCCATTAGTACGCAGCCTGAT 59.929 52.381 0.00 0.00 0.00 2.90
2195 2926 2.485479 CCCATTAGTACGCAGCCTGATT 60.485 50.000 0.00 0.00 0.00 2.57
2196 2927 3.206150 CCATTAGTACGCAGCCTGATTT 58.794 45.455 0.00 0.00 0.00 2.17
2197 2928 3.627577 CCATTAGTACGCAGCCTGATTTT 59.372 43.478 0.00 0.00 0.00 1.82
2198 2929 4.096382 CCATTAGTACGCAGCCTGATTTTT 59.904 41.667 0.00 0.00 0.00 1.94
2199 2930 5.295787 CCATTAGTACGCAGCCTGATTTTTA 59.704 40.000 0.00 0.00 0.00 1.52
2200 2931 5.789710 TTAGTACGCAGCCTGATTTTTAC 57.210 39.130 0.00 0.00 0.00 2.01
2201 2932 2.671396 AGTACGCAGCCTGATTTTTACG 59.329 45.455 0.00 0.00 0.00 3.18
2202 2933 1.519408 ACGCAGCCTGATTTTTACGT 58.481 45.000 0.00 0.00 0.00 3.57
2203 2934 1.877443 ACGCAGCCTGATTTTTACGTT 59.123 42.857 0.00 0.00 0.00 3.99
2204 2935 2.095919 ACGCAGCCTGATTTTTACGTTC 60.096 45.455 0.00 0.00 0.00 3.95
2205 2936 2.095969 CGCAGCCTGATTTTTACGTTCA 60.096 45.455 0.00 0.00 0.00 3.18
2206 2937 3.234386 GCAGCCTGATTTTTACGTTCAC 58.766 45.455 0.00 0.00 0.00 3.18
2207 2938 3.304391 GCAGCCTGATTTTTACGTTCACA 60.304 43.478 0.00 0.00 0.00 3.58
2208 2939 4.791411 GCAGCCTGATTTTTACGTTCACAA 60.791 41.667 0.00 0.00 0.00 3.33
2209 2940 4.911610 CAGCCTGATTTTTACGTTCACAAG 59.088 41.667 0.00 0.00 0.00 3.16
2210 2941 4.578928 AGCCTGATTTTTACGTTCACAAGT 59.421 37.500 0.00 0.00 0.00 3.16
2211 2942 4.909880 GCCTGATTTTTACGTTCACAAGTC 59.090 41.667 0.00 0.00 0.00 3.01
2212 2943 5.449304 CCTGATTTTTACGTTCACAAGTCC 58.551 41.667 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
235 241 9.924650 TCAGACTACTGATTTAAAACTCTTACC 57.075 33.333 0.00 0.00 46.55 2.85
259 265 8.124199 GGTATTTTAGTTTCGTCACTTGTTTCA 58.876 33.333 0.00 0.00 0.00 2.69
329 359 3.749088 TGTCGTTTGAAGCGTCCATAATT 59.251 39.130 0.64 0.00 0.00 1.40
357 414 4.226427 ACTTGATTAGAAGATGGCTGCA 57.774 40.909 0.50 0.00 0.00 4.41
360 417 6.325028 TGCTACTACTTGATTAGAAGATGGCT 59.675 38.462 0.00 0.00 0.00 4.75
380 440 8.331022 CACAATAACTACACTGATTCATGCTAC 58.669 37.037 0.00 0.00 0.00 3.58
388 534 5.312895 TGCACCACAATAACTACACTGATT 58.687 37.500 0.00 0.00 0.00 2.57
423 569 2.161410 GCGTTGATTAACATGCCAGTCA 59.839 45.455 0.95 0.00 36.58 3.41
429 575 2.159707 AGACGTGCGTTGATTAACATGC 60.160 45.455 0.00 0.00 36.58 4.06
452 598 0.736325 GAAGGCAGACTCGCGCTTTA 60.736 55.000 5.56 0.00 0.00 1.85
455 601 3.377759 AGAAGGCAGACTCGCGCT 61.378 61.111 5.56 0.00 0.00 5.92
490 636 8.857098 AGTACAAGTCTTGTATTACTTCTGACA 58.143 33.333 24.59 0.89 46.73 3.58
509 655 8.139350 TCATCCACCGTATACAATTAGTACAAG 58.861 37.037 3.32 0.00 35.05 3.16
622 768 7.780064 TGTTCAATAAATTATGGGTGGACATG 58.220 34.615 0.00 0.00 32.39 3.21
623 769 7.969690 TGTTCAATAAATTATGGGTGGACAT 57.030 32.000 0.00 0.00 34.90 3.06
624 770 7.398618 ACATGTTCAATAAATTATGGGTGGACA 59.601 33.333 0.00 1.15 0.00 4.02
625 771 7.781056 ACATGTTCAATAAATTATGGGTGGAC 58.219 34.615 0.00 0.00 0.00 4.02
671 817 9.994432 GTACTACTAGTGATCTAAACGCTTTTA 57.006 33.333 5.39 0.00 0.00 1.52
672 818 8.517878 TGTACTACTAGTGATCTAAACGCTTTT 58.482 33.333 5.39 0.00 0.00 2.27
673 819 8.048534 TGTACTACTAGTGATCTAAACGCTTT 57.951 34.615 5.39 0.00 0.00 3.51
674 820 7.621428 TGTACTACTAGTGATCTAAACGCTT 57.379 36.000 5.39 0.00 0.00 4.68
675 821 7.621428 TTGTACTACTAGTGATCTAAACGCT 57.379 36.000 5.39 0.00 0.00 5.07
676 822 8.744011 CATTTGTACTACTAGTGATCTAAACGC 58.256 37.037 5.39 0.00 0.00 4.84
677 823 9.999009 TCATTTGTACTACTAGTGATCTAAACG 57.001 33.333 5.39 0.00 0.00 3.60
681 827 9.132923 CCCTTCATTTGTACTACTAGTGATCTA 57.867 37.037 5.39 0.00 0.00 1.98
682 828 7.839705 TCCCTTCATTTGTACTACTAGTGATCT 59.160 37.037 5.39 0.00 0.00 2.75
683 829 8.008513 TCCCTTCATTTGTACTACTAGTGATC 57.991 38.462 5.39 0.00 0.00 2.92
684 830 7.620094 ACTCCCTTCATTTGTACTACTAGTGAT 59.380 37.037 5.39 0.00 0.00 3.06
685 831 6.952358 ACTCCCTTCATTTGTACTACTAGTGA 59.048 38.462 5.39 0.00 0.00 3.41
686 832 7.036220 CACTCCCTTCATTTGTACTACTAGTG 58.964 42.308 5.39 0.00 0.00 2.74
687 833 6.351117 GCACTCCCTTCATTTGTACTACTAGT 60.351 42.308 0.00 0.00 0.00 2.57
688 834 6.043411 GCACTCCCTTCATTTGTACTACTAG 58.957 44.000 0.00 0.00 0.00 2.57
689 835 5.720041 AGCACTCCCTTCATTTGTACTACTA 59.280 40.000 0.00 0.00 0.00 1.82
690 836 4.532521 AGCACTCCCTTCATTTGTACTACT 59.467 41.667 0.00 0.00 0.00 2.57
691 837 4.833390 AGCACTCCCTTCATTTGTACTAC 58.167 43.478 0.00 0.00 0.00 2.73
692 838 5.720041 AGTAGCACTCCCTTCATTTGTACTA 59.280 40.000 0.00 0.00 0.00 1.82
693 839 4.532521 AGTAGCACTCCCTTCATTTGTACT 59.467 41.667 0.00 0.00 0.00 2.73
694 840 4.833390 AGTAGCACTCCCTTCATTTGTAC 58.167 43.478 0.00 0.00 0.00 2.90
695 841 5.499004 AAGTAGCACTCCCTTCATTTGTA 57.501 39.130 0.00 0.00 0.00 2.41
696 842 4.373156 AAGTAGCACTCCCTTCATTTGT 57.627 40.909 0.00 0.00 0.00 2.83
697 843 4.082571 CCAAAGTAGCACTCCCTTCATTTG 60.083 45.833 0.00 0.00 0.00 2.32
698 844 4.082125 CCAAAGTAGCACTCCCTTCATTT 58.918 43.478 0.00 0.00 0.00 2.32
699 845 3.330701 TCCAAAGTAGCACTCCCTTCATT 59.669 43.478 0.00 0.00 0.00 2.57
700 846 2.912956 TCCAAAGTAGCACTCCCTTCAT 59.087 45.455 0.00 0.00 0.00 2.57
701 847 2.303022 CTCCAAAGTAGCACTCCCTTCA 59.697 50.000 0.00 0.00 0.00 3.02
702 848 2.355209 CCTCCAAAGTAGCACTCCCTTC 60.355 54.545 0.00 0.00 0.00 3.46
703 849 1.630878 CCTCCAAAGTAGCACTCCCTT 59.369 52.381 0.00 0.00 0.00 3.95
740 886 6.305272 ACAGTCAAATCATCATAGGAGTGT 57.695 37.500 0.00 0.00 34.92 3.55
825 972 1.238625 CCGTACCCATGTTTGGCGTT 61.239 55.000 0.00 0.00 42.15 4.84
826 973 1.673009 CCGTACCCATGTTTGGCGT 60.673 57.895 0.00 0.00 42.15 5.68
836 983 1.445716 CGTTGGTTTTGCCGTACCCA 61.446 55.000 0.00 0.00 41.21 4.51
904 1052 0.463474 GCATGGCCTCTTCTCCACTC 60.463 60.000 3.32 0.00 34.81 3.51
912 1060 1.210478 ACTTCGTATGCATGGCCTCTT 59.790 47.619 10.16 0.00 0.00 2.85
922 1070 4.201523 GCAATTTGCAAAGACTTCGTATGC 60.202 41.667 18.19 11.54 44.26 3.14
923 1071 5.425941 GCAATTTGCAAAGACTTCGTATG 57.574 39.130 18.19 6.27 44.26 2.39
995 1143 1.132453 GACTAGGTGGCGCCATTTTTC 59.868 52.381 35.23 19.50 40.61 2.29
1173 1321 4.400109 GTGACGACGCCGAGAGCA 62.400 66.667 0.00 0.00 44.04 4.26
1184 1332 1.458777 ACAGGGGTCTTGGTGACGA 60.459 57.895 0.00 0.00 46.24 4.20
1209 1357 5.392703 CCGATAATCATACGTGGCTAGCTAA 60.393 44.000 15.72 0.00 0.00 3.09
1242 1406 2.175284 TCCAAGGAAGGATGCATGCATA 59.825 45.455 32.27 10.69 36.70 3.14
1243 1407 1.063492 TCCAAGGAAGGATGCATGCAT 60.063 47.619 32.66 32.66 39.69 3.96
1244 1408 0.332293 TCCAAGGAAGGATGCATGCA 59.668 50.000 25.04 25.04 31.23 3.96
1245 1409 1.407979 CTTCCAAGGAAGGATGCATGC 59.592 52.381 18.98 11.82 45.60 4.06
1251 1415 9.791025 GTGAGTTACACACTTCCAAGGAAGGAT 62.791 44.444 27.45 15.21 45.39 3.24
1252 1416 8.584656 GTGAGTTACACACTTCCAAGGAAGGA 62.585 46.154 27.45 8.97 45.39 3.36
1253 1417 6.483369 GTGAGTTACACACTTCCAAGGAAGG 61.483 48.000 27.45 19.61 45.39 3.46
1255 1419 4.764050 TGAGTTACACACTTCCAAGGAA 57.236 40.909 0.99 0.99 35.01 3.36
1300 1464 1.798813 ACTTGACTCGAATCAAACGGC 59.201 47.619 10.85 0.00 38.12 5.68
1374 1546 8.070171 ACAATGTGAACGAAGTAGAAAAGAATG 58.930 33.333 0.00 0.00 45.00 2.67
1416 1597 7.017254 TCCTTAGGTCTAGAAAACCAAAGTCAT 59.983 37.037 0.00 0.00 39.39 3.06
1494 1675 5.221601 TGTGGTGGTTTTATGCATTTCACAT 60.222 36.000 3.54 0.00 0.00 3.21
1539 1720 0.678950 GGATCCTGCTACTCTGGCTC 59.321 60.000 3.84 0.00 34.13 4.70
1541 1722 0.392336 CTGGATCCTGCTACTCTGGC 59.608 60.000 14.23 0.00 34.13 4.85
1543 1724 1.202510 GCACTGGATCCTGCTACTCTG 60.203 57.143 17.94 9.04 0.00 3.35
1544 1725 1.118838 GCACTGGATCCTGCTACTCT 58.881 55.000 17.94 0.00 0.00 3.24
1545 1726 0.826715 TGCACTGGATCCTGCTACTC 59.173 55.000 22.52 7.94 34.29 2.59
1546 1727 0.829333 CTGCACTGGATCCTGCTACT 59.171 55.000 22.52 1.14 34.29 2.57
1567 2297 0.911769 AATCATCGAACAGGCCCTCA 59.088 50.000 0.00 0.00 0.00 3.86
1589 2319 3.538614 CTCGTCCATCACGGGGAT 58.461 61.111 0.00 0.00 46.19 3.85
1627 2357 3.374402 CTCACGCCCCTCACTCGT 61.374 66.667 0.00 0.00 36.84 4.18
1628 2358 4.135153 CCTCACGCCCCTCACTCG 62.135 72.222 0.00 0.00 0.00 4.18
1630 2360 4.316823 TCCCTCACGCCCCTCACT 62.317 66.667 0.00 0.00 0.00 3.41
1655 2385 0.687354 GCCTCCTTCCTTCAGTGTCA 59.313 55.000 0.00 0.00 0.00 3.58
1664 2394 2.134630 CTGCCTTGTGCCTCCTTCCT 62.135 60.000 0.00 0.00 40.16 3.36
1681 2411 0.029300 CCCGCTCAAACACAACACTG 59.971 55.000 0.00 0.00 0.00 3.66
1698 2428 3.866582 CCCAGCACGGATCCTCCC 61.867 72.222 10.75 0.00 36.56 4.30
1709 2439 4.028490 CTTACCGCCCACCCAGCA 62.028 66.667 0.00 0.00 0.00 4.41
1736 2467 1.887707 CACCCCTAAATCGAGCCGC 60.888 63.158 0.00 0.00 0.00 6.53
1744 2475 1.224592 CGCCAGCTCACCCCTAAAT 59.775 57.895 0.00 0.00 0.00 1.40
1745 2476 2.668632 CGCCAGCTCACCCCTAAA 59.331 61.111 0.00 0.00 0.00 1.85
1781 2512 3.000819 TCCACTACCCCACCAGCG 61.001 66.667 0.00 0.00 0.00 5.18
1786 2517 1.544759 CCAACTTGTCCACTACCCCAC 60.545 57.143 0.00 0.00 0.00 4.61
1810 2541 0.544357 ACCATCACCTTCCTCCGACA 60.544 55.000 0.00 0.00 0.00 4.35
1874 2605 2.039746 CCACAGACATACTTCAACCCCA 59.960 50.000 0.00 0.00 0.00 4.96
1916 2647 3.415087 GAGCCTCCCCTGCACCAT 61.415 66.667 0.00 0.00 0.00 3.55
1930 2661 4.643387 ACAACCCCACGCTGGAGC 62.643 66.667 5.71 0.00 40.96 4.70
1931 2662 2.107041 TACACAACCCCACGCTGGAG 62.107 60.000 5.71 0.00 40.96 3.86
1932 2663 2.107041 CTACACAACCCCACGCTGGA 62.107 60.000 5.71 0.00 40.96 3.86
1933 2664 1.671054 CTACACAACCCCACGCTGG 60.671 63.158 0.00 0.00 37.25 4.85
1934 2665 1.671054 CCTACACAACCCCACGCTG 60.671 63.158 0.00 0.00 0.00 5.18
1935 2666 2.747686 CCTACACAACCCCACGCT 59.252 61.111 0.00 0.00 0.00 5.07
1936 2667 2.359478 CCCTACACAACCCCACGC 60.359 66.667 0.00 0.00 0.00 5.34
1937 2668 2.349755 CCCCTACACAACCCCACG 59.650 66.667 0.00 0.00 0.00 4.94
1938 2669 2.035155 GCCCCTACACAACCCCAC 59.965 66.667 0.00 0.00 0.00 4.61
1939 2670 3.642503 CGCCCCTACACAACCCCA 61.643 66.667 0.00 0.00 0.00 4.96
1940 2671 4.419921 CCGCCCCTACACAACCCC 62.420 72.222 0.00 0.00 0.00 4.95
1955 2686 4.499633 ATTTACCTGGGGCGGCCG 62.500 66.667 24.05 24.05 0.00 6.13
1956 2687 1.261938 AAAATTTACCTGGGGCGGCC 61.262 55.000 22.00 22.00 0.00 6.13
1957 2688 0.174845 GAAAATTTACCTGGGGCGGC 59.825 55.000 0.00 0.00 0.00 6.53
1958 2689 0.454196 CGAAAATTTACCTGGGGCGG 59.546 55.000 0.00 0.00 0.00 6.13
1959 2690 1.455248 TCGAAAATTTACCTGGGGCG 58.545 50.000 0.00 0.00 0.00 6.13
1960 2691 3.581755 GTTTCGAAAATTTACCTGGGGC 58.418 45.455 13.10 0.00 0.00 5.80
1961 2692 3.830178 AGGTTTCGAAAATTTACCTGGGG 59.170 43.478 15.93 0.00 37.80 4.96
1962 2693 5.124936 CCTAGGTTTCGAAAATTTACCTGGG 59.875 44.000 25.14 25.14 46.68 4.45
1963 2694 5.124936 CCCTAGGTTTCGAAAATTTACCTGG 59.875 44.000 22.92 20.30 39.46 4.45
1964 2695 5.708697 ACCCTAGGTTTCGAAAATTTACCTG 59.291 40.000 22.92 14.63 39.46 4.00
1965 2696 5.884322 ACCCTAGGTTTCGAAAATTTACCT 58.116 37.500 19.51 19.51 41.80 3.08
1966 2697 6.094048 GGTACCCTAGGTTTCGAAAATTTACC 59.906 42.308 13.10 10.06 37.09 2.85
1967 2698 7.076842 GGTACCCTAGGTTTCGAAAATTTAC 57.923 40.000 13.10 0.00 37.09 2.01
1992 2723 0.969894 CGGCTAAGATGAGTAGGGGG 59.030 60.000 0.00 0.00 0.00 5.40
1993 2724 0.969894 CCGGCTAAGATGAGTAGGGG 59.030 60.000 0.00 0.00 0.00 4.79
1994 2725 0.318762 GCCGGCTAAGATGAGTAGGG 59.681 60.000 22.15 0.00 0.00 3.53
1995 2726 0.039074 CGCCGGCTAAGATGAGTAGG 60.039 60.000 26.68 0.00 0.00 3.18
1996 2727 0.039074 CCGCCGGCTAAGATGAGTAG 60.039 60.000 26.68 3.45 0.00 2.57
1997 2728 2.038690 CCGCCGGCTAAGATGAGTA 58.961 57.895 26.68 0.00 0.00 2.59
1998 2729 2.815308 CCGCCGGCTAAGATGAGT 59.185 61.111 26.68 0.00 0.00 3.41
1999 2730 2.663188 GCCGCCGGCTAAGATGAG 60.663 66.667 26.68 5.71 46.69 2.90
2016 2747 4.864334 GCTCGCCTCCCATGGTGG 62.864 72.222 11.73 13.49 39.17 4.61
2017 2748 4.100084 TGCTCGCCTCCCATGGTG 62.100 66.667 11.73 2.15 38.85 4.17
2018 2749 3.790437 CTGCTCGCCTCCCATGGT 61.790 66.667 11.73 0.00 0.00 3.55
2019 2750 2.826777 AAACTGCTCGCCTCCCATGG 62.827 60.000 4.14 4.14 0.00 3.66
2020 2751 1.372087 GAAACTGCTCGCCTCCCATG 61.372 60.000 0.00 0.00 0.00 3.66
2021 2752 1.078143 GAAACTGCTCGCCTCCCAT 60.078 57.895 0.00 0.00 0.00 4.00
2022 2753 2.347490 GAAACTGCTCGCCTCCCA 59.653 61.111 0.00 0.00 0.00 4.37
2023 2754 2.815647 CGAAACTGCTCGCCTCCC 60.816 66.667 0.00 0.00 31.04 4.30
2029 2760 1.630244 CCTTCCAGCGAAACTGCTCG 61.630 60.000 0.00 0.00 45.23 5.03
2030 2761 1.916697 GCCTTCCAGCGAAACTGCTC 61.917 60.000 0.00 0.00 45.23 4.26
2032 2763 2.563427 GCCTTCCAGCGAAACTGC 59.437 61.111 0.00 0.00 45.78 4.40
2033 2764 1.301677 GAGGCCTTCCAGCGAAACTG 61.302 60.000 6.77 0.00 46.77 3.16
2034 2765 1.003233 GAGGCCTTCCAGCGAAACT 60.003 57.895 6.77 0.00 33.74 2.66
2035 2766 1.301677 CTGAGGCCTTCCAGCGAAAC 61.302 60.000 6.77 0.00 33.74 2.78
2036 2767 1.003355 CTGAGGCCTTCCAGCGAAA 60.003 57.895 6.77 0.00 33.74 3.46
2037 2768 2.665000 CTGAGGCCTTCCAGCGAA 59.335 61.111 6.77 0.00 33.74 4.70
2038 2769 3.393970 CCTGAGGCCTTCCAGCGA 61.394 66.667 6.77 0.00 33.74 4.93
2039 2770 3.672295 GACCTGAGGCCTTCCAGCG 62.672 68.421 6.77 7.49 33.74 5.18
2040 2771 2.270527 GACCTGAGGCCTTCCAGC 59.729 66.667 6.77 0.00 33.74 4.85
2041 2772 1.601171 CAGACCTGAGGCCTTCCAG 59.399 63.158 6.77 10.99 33.74 3.86
2042 2773 1.920325 CCAGACCTGAGGCCTTCCA 60.920 63.158 6.77 0.00 33.74 3.53
2043 2774 1.904990 GACCAGACCTGAGGCCTTCC 61.905 65.000 6.77 0.00 0.00 3.46
2044 2775 1.599576 GACCAGACCTGAGGCCTTC 59.400 63.158 6.77 0.00 0.00 3.46
2045 2776 2.286523 CGACCAGACCTGAGGCCTT 61.287 63.158 6.77 0.00 0.00 4.35
2046 2777 2.681778 CGACCAGACCTGAGGCCT 60.682 66.667 3.86 3.86 0.00 5.19
2047 2778 2.680352 TCGACCAGACCTGAGGCC 60.680 66.667 0.00 0.00 0.00 5.19
2048 2779 2.888863 CTCGACCAGACCTGAGGC 59.111 66.667 0.00 0.00 0.00 4.70
2049 2780 1.326213 ATGCTCGACCAGACCTGAGG 61.326 60.000 0.00 0.00 0.00 3.86
2050 2781 0.179116 CATGCTCGACCAGACCTGAG 60.179 60.000 0.00 0.00 0.00 3.35
2051 2782 0.611896 TCATGCTCGACCAGACCTGA 60.612 55.000 0.00 0.00 0.00 3.86
2052 2783 0.459237 GTCATGCTCGACCAGACCTG 60.459 60.000 0.00 0.00 0.00 4.00
2053 2784 0.900182 TGTCATGCTCGACCAGACCT 60.900 55.000 4.01 0.00 34.88 3.85
2054 2785 0.037326 TTGTCATGCTCGACCAGACC 60.037 55.000 4.01 0.00 34.88 3.85
2055 2786 1.354040 CTTGTCATGCTCGACCAGAC 58.646 55.000 4.01 0.00 31.85 3.51
2056 2787 0.247460 CCTTGTCATGCTCGACCAGA 59.753 55.000 8.21 0.00 31.85 3.86
2057 2788 0.742281 CCCTTGTCATGCTCGACCAG 60.742 60.000 4.01 2.77 34.88 4.00
2058 2789 1.191489 TCCCTTGTCATGCTCGACCA 61.191 55.000 4.01 0.00 34.88 4.02
2059 2790 0.036388 TTCCCTTGTCATGCTCGACC 60.036 55.000 4.01 0.00 34.88 4.79
2060 2791 1.066858 TCTTCCCTTGTCATGCTCGAC 60.067 52.381 0.00 0.00 36.40 4.20
2061 2792 1.205655 CTCTTCCCTTGTCATGCTCGA 59.794 52.381 0.00 0.00 0.00 4.04
2062 2793 1.649664 CTCTTCCCTTGTCATGCTCG 58.350 55.000 0.00 0.00 0.00 5.03
2063 2794 1.556911 TCCTCTTCCCTTGTCATGCTC 59.443 52.381 0.00 0.00 0.00 4.26
2064 2795 1.661463 TCCTCTTCCCTTGTCATGCT 58.339 50.000 0.00 0.00 0.00 3.79
2065 2796 2.496899 TTCCTCTTCCCTTGTCATGC 57.503 50.000 0.00 0.00 0.00 4.06
2066 2797 3.189287 CGTTTTCCTCTTCCCTTGTCATG 59.811 47.826 0.00 0.00 0.00 3.07
2067 2798 3.072476 TCGTTTTCCTCTTCCCTTGTCAT 59.928 43.478 0.00 0.00 0.00 3.06
2068 2799 2.436542 TCGTTTTCCTCTTCCCTTGTCA 59.563 45.455 0.00 0.00 0.00 3.58
2069 2800 3.121738 TCGTTTTCCTCTTCCCTTGTC 57.878 47.619 0.00 0.00 0.00 3.18
2070 2801 3.790089 ATCGTTTTCCTCTTCCCTTGT 57.210 42.857 0.00 0.00 0.00 3.16
2071 2802 3.125316 CGAATCGTTTTCCTCTTCCCTTG 59.875 47.826 0.00 0.00 0.00 3.61
2072 2803 3.335579 CGAATCGTTTTCCTCTTCCCTT 58.664 45.455 0.00 0.00 0.00 3.95
2073 2804 2.935676 GCGAATCGTTTTCCTCTTCCCT 60.936 50.000 4.07 0.00 0.00 4.20
2074 2805 1.397343 GCGAATCGTTTTCCTCTTCCC 59.603 52.381 4.07 0.00 0.00 3.97
2075 2806 2.094417 CAGCGAATCGTTTTCCTCTTCC 59.906 50.000 4.07 0.00 0.00 3.46
2076 2807 2.474691 GCAGCGAATCGTTTTCCTCTTC 60.475 50.000 4.07 0.00 0.00 2.87
2077 2808 1.464997 GCAGCGAATCGTTTTCCTCTT 59.535 47.619 4.07 0.00 0.00 2.85
2078 2809 1.079503 GCAGCGAATCGTTTTCCTCT 58.920 50.000 4.07 0.00 0.00 3.69
2079 2810 0.097150 GGCAGCGAATCGTTTTCCTC 59.903 55.000 4.07 0.00 0.00 3.71
2080 2811 0.605319 TGGCAGCGAATCGTTTTCCT 60.605 50.000 4.07 0.00 0.00 3.36
2081 2812 0.239879 TTGGCAGCGAATCGTTTTCC 59.760 50.000 4.07 2.64 0.00 3.13
2082 2813 1.713932 GTTTGGCAGCGAATCGTTTTC 59.286 47.619 4.07 0.00 0.00 2.29
2083 2814 1.066303 TGTTTGGCAGCGAATCGTTTT 59.934 42.857 4.07 0.00 0.00 2.43
2084 2815 0.665835 TGTTTGGCAGCGAATCGTTT 59.334 45.000 4.07 0.00 0.00 3.60
2085 2816 0.881118 ATGTTTGGCAGCGAATCGTT 59.119 45.000 4.07 0.00 0.00 3.85
2086 2817 1.732941 TATGTTTGGCAGCGAATCGT 58.267 45.000 4.07 0.00 0.00 3.73
2087 2818 2.095853 AGTTATGTTTGGCAGCGAATCG 59.904 45.455 0.00 0.00 0.00 3.34
2088 2819 3.429085 CAGTTATGTTTGGCAGCGAATC 58.571 45.455 0.00 0.00 0.00 2.52
2089 2820 2.415893 GCAGTTATGTTTGGCAGCGAAT 60.416 45.455 0.00 0.00 0.00 3.34
2090 2821 1.068610 GCAGTTATGTTTGGCAGCGAA 60.069 47.619 0.00 0.00 0.00 4.70
2091 2822 0.521291 GCAGTTATGTTTGGCAGCGA 59.479 50.000 0.00 0.00 0.00 4.93
2092 2823 0.523072 AGCAGTTATGTTTGGCAGCG 59.477 50.000 0.00 0.00 0.00 5.18
2093 2824 1.466360 CGAGCAGTTATGTTTGGCAGC 60.466 52.381 0.00 0.00 0.00 5.25
2094 2825 1.466360 GCGAGCAGTTATGTTTGGCAG 60.466 52.381 0.00 0.00 0.00 4.85
2095 2826 0.521291 GCGAGCAGTTATGTTTGGCA 59.479 50.000 0.00 0.00 0.00 4.92
2096 2827 0.804989 AGCGAGCAGTTATGTTTGGC 59.195 50.000 0.00 0.00 0.00 4.52
2097 2828 3.521560 TCTAGCGAGCAGTTATGTTTGG 58.478 45.455 0.00 0.00 0.00 3.28
2098 2829 4.424626 TCTCTAGCGAGCAGTTATGTTTG 58.575 43.478 0.00 0.00 37.19 2.93
2099 2830 4.720649 TCTCTAGCGAGCAGTTATGTTT 57.279 40.909 0.00 0.00 37.19 2.83
2100 2831 4.582656 AGATCTCTAGCGAGCAGTTATGTT 59.417 41.667 0.22 0.00 37.19 2.71
2101 2832 4.141287 AGATCTCTAGCGAGCAGTTATGT 58.859 43.478 0.22 0.00 37.19 2.29
2102 2833 4.764679 AGATCTCTAGCGAGCAGTTATG 57.235 45.455 0.22 0.00 37.19 1.90
2103 2834 8.568676 TTAATAGATCTCTAGCGAGCAGTTAT 57.431 34.615 0.00 0.00 37.19 1.89
2104 2835 7.981102 TTAATAGATCTCTAGCGAGCAGTTA 57.019 36.000 0.00 0.00 37.19 2.24
2105 2836 6.885952 TTAATAGATCTCTAGCGAGCAGTT 57.114 37.500 0.00 0.00 37.19 3.16
2106 2837 6.884295 AGATTAATAGATCTCTAGCGAGCAGT 59.116 38.462 0.00 0.00 37.19 4.40
2107 2838 7.320443 AGATTAATAGATCTCTAGCGAGCAG 57.680 40.000 0.00 0.00 37.19 4.24
2108 2839 8.972458 ATAGATTAATAGATCTCTAGCGAGCA 57.028 34.615 0.00 0.00 37.54 4.26
2116 2847 9.600432 GGCCCATCTATAGATTAATAGATCTCT 57.400 37.037 12.75 0.00 43.98 3.10
2117 2848 9.373450 TGGCCCATCTATAGATTAATAGATCTC 57.627 37.037 12.75 0.00 43.98 2.75
2118 2849 9.735362 TTGGCCCATCTATAGATTAATAGATCT 57.265 33.333 12.75 0.00 43.98 2.75
2121 2852 9.506042 TGATTGGCCCATCTATAGATTAATAGA 57.494 33.333 17.19 0.00 41.50 1.98
2124 2855 8.618385 ACTTGATTGGCCCATCTATAGATTAAT 58.382 33.333 17.19 8.54 31.21 1.40
2125 2856 7.988937 ACTTGATTGGCCCATCTATAGATTAA 58.011 34.615 17.19 4.50 31.21 1.40
2126 2857 7.574021 ACTTGATTGGCCCATCTATAGATTA 57.426 36.000 17.19 0.00 31.21 1.75
2127 2858 6.460103 ACTTGATTGGCCCATCTATAGATT 57.540 37.500 17.19 0.00 31.21 2.40
2128 2859 7.574021 TTACTTGATTGGCCCATCTATAGAT 57.426 36.000 17.19 9.57 34.56 1.98
2129 2860 6.520742 GCTTACTTGATTGGCCCATCTATAGA 60.521 42.308 17.19 4.57 0.00 1.98
2130 2861 5.645497 GCTTACTTGATTGGCCCATCTATAG 59.355 44.000 17.19 13.32 0.00 1.31
2131 2862 5.514834 GGCTTACTTGATTGGCCCATCTATA 60.515 44.000 17.19 5.08 37.12 1.31
2132 2863 4.401925 GCTTACTTGATTGGCCCATCTAT 58.598 43.478 17.19 5.95 0.00 1.98
2133 2864 3.435026 GGCTTACTTGATTGGCCCATCTA 60.435 47.826 17.19 9.33 37.12 1.98
2134 2865 2.659428 GCTTACTTGATTGGCCCATCT 58.341 47.619 17.19 0.69 0.00 2.90
2135 2866 1.683385 GGCTTACTTGATTGGCCCATC 59.317 52.381 9.92 9.92 37.12 3.51
2136 2867 1.780503 GGCTTACTTGATTGGCCCAT 58.219 50.000 0.00 0.00 37.12 4.00
2137 2868 3.281332 GGCTTACTTGATTGGCCCA 57.719 52.632 0.00 0.00 37.12 5.36
2139 2870 1.555967 TTGGGCTTACTTGATTGGCC 58.444 50.000 0.00 0.00 44.16 5.36
2140 2871 5.337578 TTTATTGGGCTTACTTGATTGGC 57.662 39.130 0.00 0.00 0.00 4.52
2141 2872 8.791327 AATTTTTATTGGGCTTACTTGATTGG 57.209 30.769 0.00 0.00 0.00 3.16
2148 2879 8.633561 GCTCATCTAATTTTTATTGGGCTTACT 58.366 33.333 0.00 0.00 0.00 2.24
2149 2880 7.867909 GGCTCATCTAATTTTTATTGGGCTTAC 59.132 37.037 0.00 0.00 31.34 2.34
2150 2881 7.015195 GGGCTCATCTAATTTTTATTGGGCTTA 59.985 37.037 0.00 0.00 31.34 3.09
2151 2882 6.183361 GGGCTCATCTAATTTTTATTGGGCTT 60.183 38.462 0.00 0.00 31.34 4.35
2152 2883 5.305386 GGGCTCATCTAATTTTTATTGGGCT 59.695 40.000 0.00 0.00 31.34 5.19
2153 2884 5.070313 TGGGCTCATCTAATTTTTATTGGGC 59.930 40.000 0.00 0.00 0.00 5.36
2154 2885 6.729690 TGGGCTCATCTAATTTTTATTGGG 57.270 37.500 0.00 0.00 0.00 4.12
2155 2886 9.918630 CTAATGGGCTCATCTAATTTTTATTGG 57.081 33.333 0.00 0.00 32.24 3.16
2159 2890 9.268268 CGTACTAATGGGCTCATCTAATTTTTA 57.732 33.333 0.00 0.00 32.24 1.52
2160 2891 7.255139 GCGTACTAATGGGCTCATCTAATTTTT 60.255 37.037 0.00 0.00 32.24 1.94
2161 2892 6.204882 GCGTACTAATGGGCTCATCTAATTTT 59.795 38.462 0.00 0.00 32.24 1.82
2162 2893 5.701290 GCGTACTAATGGGCTCATCTAATTT 59.299 40.000 0.00 0.00 32.24 1.82
2163 2894 5.221641 TGCGTACTAATGGGCTCATCTAATT 60.222 40.000 0.00 0.00 32.24 1.40
2164 2895 4.283467 TGCGTACTAATGGGCTCATCTAAT 59.717 41.667 0.00 0.00 32.24 1.73
2165 2896 3.639561 TGCGTACTAATGGGCTCATCTAA 59.360 43.478 0.00 0.00 32.24 2.10
2166 2897 3.227614 TGCGTACTAATGGGCTCATCTA 58.772 45.455 0.00 0.00 32.24 1.98
2167 2898 2.036475 CTGCGTACTAATGGGCTCATCT 59.964 50.000 0.00 0.00 32.24 2.90
2168 2899 2.408050 CTGCGTACTAATGGGCTCATC 58.592 52.381 0.00 0.00 32.24 2.92
2169 2900 1.541233 GCTGCGTACTAATGGGCTCAT 60.541 52.381 0.00 0.00 34.56 2.90
2170 2901 0.179084 GCTGCGTACTAATGGGCTCA 60.179 55.000 0.00 0.00 0.00 4.26
2171 2902 0.880718 GGCTGCGTACTAATGGGCTC 60.881 60.000 0.00 0.00 0.00 4.70
2172 2903 1.146263 GGCTGCGTACTAATGGGCT 59.854 57.895 0.00 0.00 0.00 5.19
2173 2904 1.146263 AGGCTGCGTACTAATGGGC 59.854 57.895 0.00 0.00 0.00 5.36
2174 2905 0.464036 TCAGGCTGCGTACTAATGGG 59.536 55.000 10.34 0.00 0.00 4.00
2175 2906 2.533266 ATCAGGCTGCGTACTAATGG 57.467 50.000 10.34 0.00 0.00 3.16
2176 2907 4.882671 AAAATCAGGCTGCGTACTAATG 57.117 40.909 10.34 0.00 0.00 1.90
2177 2908 5.006358 CGTAAAAATCAGGCTGCGTACTAAT 59.994 40.000 10.34 0.00 0.00 1.73
2178 2909 4.327898 CGTAAAAATCAGGCTGCGTACTAA 59.672 41.667 10.34 0.00 0.00 2.24
2179 2910 3.861113 CGTAAAAATCAGGCTGCGTACTA 59.139 43.478 10.34 0.00 0.00 1.82
2180 2911 2.671396 CGTAAAAATCAGGCTGCGTACT 59.329 45.455 10.34 0.00 0.00 2.73
2181 2912 2.414138 ACGTAAAAATCAGGCTGCGTAC 59.586 45.455 10.34 6.27 0.00 3.67
2182 2913 2.690786 ACGTAAAAATCAGGCTGCGTA 58.309 42.857 10.34 0.00 0.00 4.42
2183 2914 1.519408 ACGTAAAAATCAGGCTGCGT 58.481 45.000 10.34 8.96 0.00 5.24
2184 2915 2.095969 TGAACGTAAAAATCAGGCTGCG 60.096 45.455 10.34 8.26 0.00 5.18
2185 2916 3.234386 GTGAACGTAAAAATCAGGCTGC 58.766 45.455 10.34 0.00 0.00 5.25
2186 2917 4.481930 TGTGAACGTAAAAATCAGGCTG 57.518 40.909 8.58 8.58 0.00 4.85
2187 2918 4.578928 ACTTGTGAACGTAAAAATCAGGCT 59.421 37.500 0.00 0.00 0.00 4.58
2188 2919 4.855531 ACTTGTGAACGTAAAAATCAGGC 58.144 39.130 0.00 0.00 0.00 4.85
2189 2920 5.449304 GGACTTGTGAACGTAAAAATCAGG 58.551 41.667 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.